Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1241450 | XP_003628014.1 | 97.569 | 288 | 7 | 0 | 1 | 288 | 18 | 305 | 0.0 | 580 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1241450 | sp|Q2YDP3|NC2A_BOVIN | 41.176 | 119 | 67 | 1 | 1 | 119 | 21 | 136 | 2.22e-22 | 95.1 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa1241450 | TF | NF-YC |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1241440 | Msa1241450 | 0.932368 | 9.452818e-95 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1241450 | MtrunA17_Chr8g0354151 | 97.569 | 288 | 7 | 0 | 1 | 288 | 18 | 305 | 0.0 | 580 |
| Msa1241450 | MtrunA17_Chr3g0081161 | 67.626 | 278 | 74 | 6 | 1 | 277 | 18 | 280 | 6.50e-114 | 330 |
| Msa1241450 | MtrunA17_Chr5g0441241 | 44.444 | 288 | 133 | 8 | 1 | 276 | 1 | 273 | 2.74e-52 | 172 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1241450 | AT3G12480.1 | 45.017 | 291 | 120 | 8 | 1 | 277 | 18 | 282 | 1.30e-57 | 187 |
| Msa1241450 | AT5G19490.1 | 58.678 | 121 | 41 | 3 | 1 | 120 | 18 | 130 | 2.09e-39 | 139 |
Find 107 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCACCGTTAATACCAATTT+TGG | 0.109858 | 8_2:+25026013 | Msa1241450:five_prime_UTR |
| CATTTGTATCTGTAGTATTT+TGG | 0.175216 | 8_2:-25027970 | None:intergenic |
| CTGACACATGTTGGATTCTT+TGG | 0.222703 | 8_2:+25025971 | None:intergenic |
| TGAACTTCCATCTTTGAAAA+AGG | 0.232386 | 8_2:-25028692 | None:intergenic |
| TGGCATTCAGATCAATATTA+AGG | 0.272737 | 8_2:-25028075 | None:intergenic |
| GGCTTCAGGATTAGCGGCTT+TGG | 0.273888 | 8_2:-25028158 | None:intergenic |
| AATGTCCCATTTGTTTAATC+TGG | 0.276795 | 8_2:+25028490 | Msa1241450:three_prime_UTR |
| AGAACAGCAACATTATTCTT+TGG | 0.296672 | 8_2:-25028028 | None:intergenic |
| CAGTCATCATGAAGAAATTC+CGG | 0.308338 | 8_2:+25028219 | Msa1241450:CDS |
| TCACAAATGCAATGAATTCA+TGG | 0.326874 | 8_2:-25026337 | None:intergenic |
| GAACGAAAATGATGACAAAA+AGG | 0.328849 | 8_2:+25028102 | Msa1241450:CDS |
| AAAATAAAATTTACTACATA+TGG | 0.332756 | 8_2:-25028594 | None:intergenic |
| GCTTCAGGATTAGCGGCTTT+GGG | 0.341876 | 8_2:-25028157 | None:intergenic |
| TGTTGGAAACATAAATTTGC+AGG | 0.353248 | 8_2:+25026078 | Msa1241450:five_prime_UTR |
| AATTCAAAGAAATCCAAAAT+TGG | 0.357177 | 8_2:-25026026 | None:intergenic |
| CACGAACCAGATTAAACAAA+TGG | 0.367554 | 8_2:-25028496 | None:intergenic |
| CCTTCTATTCCAGCTTGAGT+TGG | 0.372989 | 8_2:+25027808 | Msa1241450:intron |
| AAATCCAAAATTGGTATTAA+CGG | 0.382840 | 8_2:-25026017 | None:intergenic |
| ATTCATTACAGCTAAAGCTT+TGG | 0.394482 | 8_2:+25026251 | Msa1241450:intron |
| AAGGGTAAATTGTAGTCTTC+GGG | 0.401128 | 8_2:+25028341 | Msa1241450:exon |
| AGAAACACTATTTGATGTGT+TGG | 0.404204 | 8_2:+25026061 | Msa1241450:five_prime_UTR |
| CTTCTATTCCAGCTTGAGTT+GGG | 0.411737 | 8_2:+25027809 | Msa1241450:intron |
| AGGGGAAGAGGCCGAGGTAG+AGG | 0.414973 | 8_2:+25027851 | Msa1241450:CDS |
| AGCAACTCACAAACTAAAAC+AGG | 0.424990 | 8_2:-25026160 | None:intergenic |
| CCATGACCATGGCCGTAGTC+AGG | 0.439112 | 8_2:-25027144 | None:intergenic |
| GAAGGGTAAATTGTAGTCTT+CGG | 0.439457 | 8_2:+25028340 | Msa1241450:exon |
| TCATGATGACTGCTGTCTGT+TGG | 0.443464 | 8_2:-25028208 | None:intergenic |
| CAGCACCACCAGCATCAGTA+TGG | 0.445315 | 8_2:-25027167 | None:intergenic |
| AGAGGCCGAGGTAGAGGAAG+AGG | 0.445372 | 8_2:+25027857 | Msa1241450:CDS |
| TCAAAGAGAGGGACATCATC+AGG | 0.446129 | 8_2:+25027907 | Msa1241450:CDS |
| GTTGGAGGAGGTTCAGAGAC+AGG | 0.449170 | 8_2:-25028190 | None:intergenic |
| CATCCATTCGCGTACCAAGC+TGG | 0.451375 | 8_2:-25028294 | None:intergenic |
| AGTCATCATGAAGAAATTCC+GGG | 0.458892 | 8_2:+25028220 | Msa1241450:CDS |
| AGTGAGTCAGAGTTATCAAC+AGG | 0.460372 | 8_2:-25028052 | None:intergenic |
| CGAGGTAGAGGAAGAGGAAG+AGG | 0.463525 | 8_2:+25027863 | Msa1241450:CDS |
| ACAAATGTGGCTATACTTGA+TGG | 0.465433 | 8_2:+25027986 | Msa1241450:CDS |
| ATCCATTCGCGTACCAAGCT+GGG | 0.471142 | 8_2:-25028293 | None:intergenic |
| CGGCCTCTTCCCCTACCAGT+AGG | 0.471290 | 8_2:-25027842 | None:intergenic |
| AGAGGAAGAGGACGAGGTCG+AGG | 0.473350 | 8_2:+25027875 | Msa1241450:CDS |
| TAAATTGTAGTCTTCGGGAG+GGG | 0.475260 | 8_2:+25028346 | Msa1241450:exon |
| ATAACATGTCTTATGTTGAC+TGG | 0.479084 | 8_2:+25028451 | Msa1241450:three_prime_UTR |
| TGATGACTGCTGTCTGTTGG+AGG | 0.488755 | 8_2:-25028205 | None:intergenic |
| ATGAAATAACTCTTCAAAGA+GGG | 0.491656 | 8_2:+25026307 | Msa1241450:CDS |
| GGCAAGCTGCATCGAATCAA+TGG | 0.495075 | 8_2:-25028272 | None:intergenic |
| GAAACATAAATTTGCAGGCT+CGG | 0.504929 | 8_2:+25026083 | Msa1241450:five_prime_UTR |
| CCTGACTACGGCCATGGTCA+TGG | 0.507215 | 8_2:+25027144 | Msa1241450:CDS |
| GAAGAGTTATTTCATAAGTA+CGG | 0.508808 | 8_2:-25026299 | None:intergenic |
| TTGGGCCACACTAGCCCTAC+TGG | 0.513050 | 8_2:+25027827 | Msa1241450:CDS |
| CCTTTCTGAGGTGGACAAGA+TGG | 0.513246 | 8_2:+25028249 | Msa1241450:CDS |
| AGCCCTACTGGTAGGGGAAG+AGG | 0.516467 | 8_2:+25027839 | Msa1241450:CDS |
| CCACACTAGCCCTACTGGTA+GGG | 0.519565 | 8_2:+25027832 | Msa1241450:CDS |
| TCCGGGCTGGTCCCTTTCTG+AGG | 0.520532 | 8_2:+25028237 | Msa1241450:CDS |
| AAATTGTAGTCTTCGGGAGG+GGG | 0.520601 | 8_2:+25028347 | Msa1241450:exon |
| GATGAAGATTATGACGAGGA+AGG | 0.523023 | 8_2:+25028322 | Msa1241450:CDS |
| TAATGTATTTGACTTTCTGA+AGG | 0.523769 | 8_2:+25027104 | Msa1241450:CDS |
| GGGCTGGTCCCTTTCTGAGG+TGG | 0.523889 | 8_2:+25028240 | Msa1241450:CDS |
| GTCAGCAAGGTTCCTGACTA+CGG | 0.534254 | 8_2:+25027132 | Msa1241450:CDS |
| TGGCTAACTTGCTGAACAGA+AGG | 0.535919 | 8_2:-25027950 | None:intergenic |
| CCCTACCAGTAGGGCTAGTG+TGG | 0.536396 | 8_2:-25027832 | None:intergenic |
| CCATCTTGTCCACCTCAGAA+AGG | 0.536812 | 8_2:-25028249 | None:intergenic |
| ACGAACCAGATTAAACAAAT+GGG | 0.537114 | 8_2:-25028495 | None:intergenic |
| GTTAAGACTTGCAGTTCCAA+TGG | 0.542652 | 8_2:-25028628 | None:intergenic |
| ACTGGTAGGGGAAGAGGCCG+AGG | 0.543075 | 8_2:+25027845 | Msa1241450:CDS |
| ATGCAAGCTGATGAAGATGT+TGG | 0.543982 | 8_2:+25026118 | Msa1241450:CDS |
| CATCTTGTCCACCTCAGAAA+GGG | 0.544706 | 8_2:-25028248 | None:intergenic |
| CAGTGATGAAGAAGCTAAGA+GGG | 0.545305 | 8_2:+25027328 | Msa1241450:CDS |
| TTGGAGGAGGTTCAGAGACA+GGG | 0.547073 | 8_2:-25028189 | None:intergenic |
| TGCCCAGCTTGGTACGCGAA+TGG | 0.547995 | 8_2:+25028291 | Msa1241450:CDS |
| TGACTGCTGTCTGTTGGAGG+AGG | 0.548420 | 8_2:-25028202 | None:intergenic |
| GGTCATGGCCATACTGATGC+TGG | 0.551049 | 8_2:+25027159 | Msa1241450:CDS |
| CTCTTCCTCTTCCTCTACCT+CGG | 0.552926 | 8_2:-25027862 | None:intergenic |
| TCCAAAATTGGTATTAACGG+TGG | 0.553881 | 8_2:-25026014 | None:intergenic |
| CCAAAATTGGTATTAACGGT+GGG | 0.554337 | 8_2:-25026013 | None:intergenic |
| ATTAGCGGCTTCAGGATTAG+CGG | 0.555789 | 8_2:-25028164 | None:intergenic |
| CATGTTTGCAGGAAAGCTGC+AGG | 0.556670 | 8_2:+25027290 | Msa1241450:intron |
| ACAGTGATGAAGAAGCTAAG+AGG | 0.558884 | 8_2:+25027327 | Msa1241450:CDS |
| AGGAAAGCTGCAGGTGATGA+TGG | 0.561033 | 8_2:+25027299 | Msa1241450:intron |
| ATGAAGATTATGACGAGGAA+GGG | 0.569841 | 8_2:+25028323 | Msa1241450:CDS |
| GGCCTCTTCCCCTACCAGTA+GGG | 0.586705 | 8_2:-25027841 | None:intergenic |
| TAACATGTCTTATGTTGACT+GGG | 0.587051 | 8_2:+25028452 | Msa1241450:three_prime_UTR |
| AGAGGAAGAGGAAGAGGACG+AGG | 0.587613 | 8_2:+25027869 | Msa1241450:CDS |
| CACACTAGCCCTACTGGTAG+GGG | 0.591865 | 8_2:+25027833 | Msa1241450:CDS |
| ATCATGAAGAAATTCCGGGC+TGG | 0.593923 | 8_2:+25028224 | Msa1241450:CDS |
| ACCTCAGAAAGGGACCAGCC+CGG | 0.596293 | 8_2:-25028238 | None:intergenic |
| TATGAAATAACTCTTCAAAG+AGG | 0.600363 | 8_2:+25026306 | Msa1241450:CDS |
| AGAAGCTAAGAGGGGCAAGA+TGG | 0.603158 | 8_2:+25027337 | Msa1241450:CDS |
| TGAAATAACTCTTCAAAGAG+GGG | 0.609065 | 8_2:+25026308 | Msa1241450:CDS |
| AAGGTTCCTGACTACGGCCA+TGG | 0.610732 | 8_2:+25027138 | Msa1241450:CDS |
| GGACGAGCTATTCAAAGAGA+GGG | 0.624122 | 8_2:+25027896 | Msa1241450:CDS |
| AGAAGGACAAGGCTCAGACT+CGG | 0.625318 | 8_2:-25027933 | None:intergenic |
| AGGACGAGCTATTCAAAGAG+AGG | 0.625357 | 8_2:+25027895 | Msa1241450:CDS |
| TCTGAAGGATGTAGTCAGCA+AGG | 0.625572 | 8_2:+25027119 | Msa1241450:CDS |
| CAACATAAGACATGTTATGA+CGG | 0.629815 | 8_2:-25028446 | None:intergenic |
| GGTAAATTGTAGTCTTCGGG+AGG | 0.631997 | 8_2:+25028344 | Msa1241450:exon |
| GTAAATTGTAGTCTTCGGGA+GGG | 0.637584 | 8_2:+25028345 | Msa1241450:exon |
| TTTCATAAGTACGGTCACAA+AGG | 0.638025 | 8_2:-25026290 | None:intergenic |
| AACATTGATATACAATACAC+AGG | 0.639293 | 8_2:-25028571 | None:intergenic |
| CATCAGTATGGCCATGACCA+TGG | 0.644405 | 8_2:-25027155 | None:intergenic |
| GCCACACTAGCCCTACTGGT+AGG | 0.654203 | 8_2:+25027831 | Msa1241450:CDS |
| CATGGCCATACTGATGCTGG+TGG | 0.661901 | 8_2:+25027162 | Msa1241450:CDS |
| TGGAGGAGGTTCAGAGACAG+GGG | 0.663154 | 8_2:-25028188 | None:intergenic |
| AGATGTTGGAAAGATAGCAT+TGG | 0.667342 | 8_2:+25026132 | Msa1241450:CDS |
| AAATACTACAGATACAAATG+TGG | 0.667589 | 8_2:+25027973 | Msa1241450:CDS |
| AGATGATGAAGATTATGACG+AGG | 0.685761 | 8_2:+25028318 | Msa1241450:CDS |
| ACTTGCTGAACAGAAGGACA+AGG | 0.703007 | 8_2:-25027944 | None:intergenic |
| GGAGGAGGTTCAGAGACAGG+GGG | 0.712756 | 8_2:-25028187 | None:intergenic |
| AGTGATGAAGAAGCTAAGAG+GGG | 0.724764 | 8_2:+25027329 | Msa1241450:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATAAAATTTACTACATA+TGG | - | chr8_2:25028597-25028616 | None:intergenic | 10.0% |
| !! | AAAAAAAATAATAGACTACT+TGG | - | chr8_2:25026983-25027002 | None:intergenic | 15.0% |
| !! | AAATCCAAAATTGGTATTAA+CGG | - | chr8_2:25026020-25026039 | None:intergenic | 20.0% |
| !! | AATTCAAAGAAATCCAAAAT+TGG | - | chr8_2:25026029-25026048 | None:intergenic | 20.0% |
| !! | TCAAATCAAATTGTCTAAAA+AGG | - | chr8_2:25026686-25026705 | None:intergenic | 20.0% |
| !!! | TTTTATTGAACATGTGAAAA+TGG | + | chr8_2:25026710-25026729 | Msa1241450:intron | 20.0% |
| !! | TGTTTAAGAAATTAAAACAC+GGG | - | chr8_2:25027396-25027415 | None:intergenic | 20.0% |
| !! | GTGTTTAAGAAATTAAAACA+CGG | - | chr8_2:25027397-25027416 | None:intergenic | 20.0% |
| !!! | TTGTTTTTTATGGAGAAAAA+AGG | - | chr8_2:25027475-25027494 | None:intergenic | 20.0% |
| !!! | TTTTTTCTCCATAAAAAACA+AGG | + | chr8_2:25027474-25027493 | Msa1241450:intron | 20.0% |
| !!! | ATATACAACCTTGTTTTTTA+TGG | - | chr8_2:25027485-25027504 | None:intergenic | 20.0% |
| !!! | TGAAAGTATTGTTGTAATTT+GGG | - | chr8_2:25027526-25027545 | None:intergenic | 20.0% |
| !!! | ATTTTTCGAAATTTCATGTT+TGG | + | chr8_2:25027564-25027583 | Msa1241450:intron | 20.0% |
| !! | GAAGAGTTATTTCATAAGTA+CGG | - | chr8_2:25026302-25026321 | None:intergenic | 25.0% |
| ! | TATGAAATAACTCTTCAAAG+AGG | + | chr8_2:25026306-25026325 | Msa1241450:CDS | 25.0% |
| ! | ATGAAATAACTCTTCAAAGA+GGG | + | chr8_2:25026307-25026326 | Msa1241450:CDS | 25.0% |
| ! | AAGATTATCATCTACAACAA+TGG | + | chr8_2:25026621-25026640 | Msa1241450:intron | 25.0% |
| ! | TAAAAAGGAAAACATCTAGA+AGG | - | chr8_2:25026671-25026690 | None:intergenic | 25.0% |
| ! | TCAAACAATTCATAAGCATT+TGG | - | chr8_2:25026814-25026833 | None:intergenic | 25.0% |
| ! | TTCTAATATCTGTTCTTGTA+TGG | + | chr8_2:25026848-25026867 | Msa1241450:intron | 25.0% |
| ! | TAGTTACAATTAATCAGTTC+AGG | - | chr8_2:25026945-25026964 | None:intergenic | 25.0% |
| ! | TGTTGAAGATAAAATGAGTT+TGG | - | chr8_2:25027020-25027039 | None:intergenic | 25.0% |
| !! | TAATGTATTTGACTTTCTGA+AGG | + | chr8_2:25027104-25027123 | Msa1241450:CDS | 25.0% |
| ! | TAACTACATGTATATCAGAA+AGG | - | chr8_2:25027255-25027274 | None:intergenic | 25.0% |
| ! | GTTTAAGAAATTAAAACACG+GGG | - | chr8_2:25027395-25027414 | None:intergenic | 25.0% |
| !!! | GTGAAAGTATTGTTGTAATT+TGG | - | chr8_2:25027527-25027546 | None:intergenic | 25.0% |
| ! | ACATGAAATTTCGAAAAATG+AGG | - | chr8_2:25027563-25027582 | None:intergenic | 25.0% |
| !! | AATTTCATGTTTGGAATACT+TGG | + | chr8_2:25027573-25027592 | Msa1241450:intron | 25.0% |
| !!! | AATTGCTTTTTCCTAGAATA+AGG | - | chr8_2:25027757-25027776 | None:intergenic | 25.0% |
| !! | CATTTGTATCTGTAGTATTT+TGG | - | chr8_2:25027973-25027992 | None:intergenic | 25.0% |
| ! | AAATACTACAGATACAAATG+TGG | + | chr8_2:25027973-25027992 | Msa1241450:CDS | 25.0% |
| ! | AACATTGATATACAATACAC+AGG | - | chr8_2:25028574-25028593 | None:intergenic | 25.0% |
| !! | ATTTTATGCATTCAAACCAT+TGG | + | chr8_2:25028612-25028631 | Msa1241450:three_prime_UTR | 25.0% |
| !!! | AGTTAAACCTTTTTCAAAGA+TGG | + | chr8_2:25028685-25028704 | Msa1241450:three_prime_UTR | 25.0% |
| AGAAACACTATTTGATGTGT+TGG | + | chr8_2:25026061-25026080 | Msa1241450:five_prime_UTR | 30.0% | |
| TGTTGGAAACATAAATTTGC+AGG | + | chr8_2:25026078-25026097 | Msa1241450:five_prime_UTR | 30.0% | |
| ATTCATTACAGCTAAAGCTT+TGG | + | chr8_2:25026251-25026270 | Msa1241450:intron | 30.0% | |
| TGAAATAACTCTTCAAAGAG+GGG | + | chr8_2:25026308-25026327 | Msa1241450:CDS | 30.0% | |
| TCACAAATGCAATGAATTCA+TGG | - | chr8_2:25026340-25026359 | None:intergenic | 30.0% | |
| ! | GTTAGTTTGACCACTAAAAT+GGG | - | chr8_2:25026397-25026416 | None:intergenic | 30.0% |
| ! | AGTTAGTTTGACCACTAAAA+TGG | - | chr8_2:25026398-25026417 | None:intergenic | 30.0% |
| ! | ATTATTTGATCAAGCATTGC+AGG | - | chr8_2:25026905-25026924 | None:intergenic | 30.0% |
| ATGCTTGATCAAATAATGCA+CGG | + | chr8_2:25026908-25026927 | Msa1241450:intron | 30.0% | |
| AAATAATAGACTACTTGGAC+AGG | - | chr8_2:25026978-25026997 | None:intergenic | 30.0% | |
| ATAAAATGAGTTTGGAAGGA+AGG | - | chr8_2:25027012-25027031 | None:intergenic | 30.0% | |
| GAAGATAAAATGAGTTTGGA+AGG | - | chr8_2:25027016-25027035 | None:intergenic | 30.0% | |
| !! | TTCAAACCTTCTTTTTGGAA+TGG | - | chr8_2:25027202-25027221 | None:intergenic | 30.0% |
| ! | AAGACTTCAAACCTTCTTTT+TGG | - | chr8_2:25027207-25027226 | None:intergenic | 30.0% |
| ATTCATTCCTACAAGATTTC+AGG | - | chr8_2:25027694-25027713 | None:intergenic | 30.0% | |
| ! | CTTTTTCCTAGAATAAGGAA+TGG | - | chr8_2:25027752-25027771 | None:intergenic | 30.0% |
| AGAACAGCAACATTATTCTT+TGG | - | chr8_2:25028031-25028050 | None:intergenic | 30.0% | |
| TGGCATTCAGATCAATATTA+AGG | - | chr8_2:25028078-25028097 | None:intergenic | 30.0% | |
| ! | GTCATCATTTTCGTTCATAT+TGG | - | chr8_2:25028098-25028117 | None:intergenic | 30.0% |
| GAACGAAAATGATGACAAAA+AGG | + | chr8_2:25028102-25028121 | Msa1241450:CDS | 30.0% | |
| CAACATAAGACATGTTATGA+CGG | - | chr8_2:25028449-25028468 | None:intergenic | 30.0% | |
| ATAACATGTCTTATGTTGAC+TGG | + | chr8_2:25028451-25028470 | Msa1241450:three_prime_UTR | 30.0% | |
| ! | TAACATGTCTTATGTTGACT+GGG | + | chr8_2:25028452-25028471 | Msa1241450:three_prime_UTR | 30.0% |
| ! | TTATGTTGACTGGGAAAAAA+AGG | + | chr8_2:25028461-25028480 | Msa1241450:three_prime_UTR | 30.0% |
| ! | TATGTTGACTGGGAAAAAAA+GGG | + | chr8_2:25028462-25028481 | Msa1241450:three_prime_UTR | 30.0% |
| AATGTCCCATTTGTTTAATC+TGG | + | chr8_2:25028490-25028509 | Msa1241450:three_prime_UTR | 30.0% | |
| ACGAACCAGATTAAACAAAT+GGG | - | chr8_2:25028498-25028517 | None:intergenic | 30.0% | |
| !!! | TGTTAGCTTGTTGTACTTTT+AGG | + | chr8_2:25028548-25028567 | Msa1241450:three_prime_UTR | 30.0% |
| ! | TGAACTTCCATCTTTGAAAA+AGG | - | chr8_2:25028695-25028714 | None:intergenic | 30.0% |
| CCAAAATTGGTATTAACGGT+GGG | - | chr8_2:25026016-25026035 | None:intergenic | 35.0% | |
| TCCAAAATTGGTATTAACGG+TGG | - | chr8_2:25026017-25026036 | None:intergenic | 35.0% | |
| GAAACATAAATTTGCAGGCT+CGG | + | chr8_2:25026083-25026102 | Msa1241450:five_prime_UTR | 35.0% | |
| AGATGTTGGAAAGATAGCAT+TGG | + | chr8_2:25026132-25026151 | Msa1241450:CDS | 35.0% | |
| AGCAACTCACAAACTAAAAC+AGG | - | chr8_2:25026163-25026182 | None:intergenic | 35.0% | |
| TTTCATAAGTACGGTCACAA+AGG | - | chr8_2:25026293-25026312 | None:intergenic | 35.0% | |
| ! | TCTCTGATTTCCCATTTTAG+TGG | + | chr8_2:25026384-25026403 | Msa1241450:intron | 35.0% |
| ACTAACTCAAGAAATCAGAG+CGG | + | chr8_2:25026411-25026430 | Msa1241450:intron | 35.0% | |
| TGAACTCAATTTATCGTCAG+TGG | + | chr8_2:25026549-25026568 | Msa1241450:intron | 35.0% | |
| GTTTACATTTGACACTCGTT+AGG | - | chr8_2:25027058-25027077 | None:intergenic | 35.0% | |
| ATCAGACCATTCCAAAAAGA+AGG | + | chr8_2:25027193-25027212 | Msa1241450:CDS | 35.0% | |
| TGTGATTGATACTGACGAAA+TGG | - | chr8_2:25027429-25027448 | None:intergenic | 35.0% | |
| ! | TTGTCTTTTGCTTGCACAAA+TGG | - | chr8_2:25027670-25027689 | None:intergenic | 35.0% |
| AGACAATCCTGAAATCTTGT+AGG | + | chr8_2:25027684-25027703 | Msa1241450:intron | 35.0% | |
| TTCTAGCCATTCCTTATTCT+AGG | + | chr8_2:25027743-25027762 | Msa1241450:intron | 35.0% | |
| ACAAATGTGGCTATACTTGA+TGG | + | chr8_2:25027986-25028005 | Msa1241450:CDS | 35.0% | |
| CAGTCATCATGAAGAAATTC+CGG | + | chr8_2:25028219-25028238 | Msa1241450:CDS | 35.0% | |
| AGTCATCATGAAGAAATTCC+GGG | + | chr8_2:25028220-25028239 | Msa1241450:CDS | 35.0% | |
| AGATGATGAAGATTATGACG+AGG | + | chr8_2:25028318-25028337 | Msa1241450:CDS | 35.0% | |
| ATGAAGATTATGACGAGGAA+GGG | + | chr8_2:25028323-25028342 | Msa1241450:CDS | 35.0% | |
| GAAGGGTAAATTGTAGTCTT+CGG | + | chr8_2:25028340-25028359 | Msa1241450:exon | 35.0% | |
| AAGGGTAAATTGTAGTCTTC+GGG | + | chr8_2:25028341-25028360 | Msa1241450:exon | 35.0% | |
| CACGAACCAGATTAAACAAA+TGG | - | chr8_2:25028499-25028518 | None:intergenic | 35.0% | |
| ! | CCCACCGTTAATACCAATTT+TGG | + | chr8_2:25026013-25026032 | Msa1241450:five_prime_UTR | 40.0% |
| ATGCAAGCTGATGAAGATGT+TGG | + | chr8_2:25026118-25026137 | Msa1241450:CDS | 40.0% | |
| ! | AACTTTAAGCTGCTGTTTGC+TGG | + | chr8_2:25026207-25026226 | Msa1241450:intron | 40.0% |
| TTATCGTCAGTGGTCATTGT+TGG | + | chr8_2:25026559-25026578 | Msa1241450:intron | 40.0% | |
| TGATCAAATAATGCACGGCT+TGG | + | chr8_2:25026913-25026932 | Msa1241450:intron | 40.0% | |
| GATCAAATAATGCACGGCTT+GGG | + | chr8_2:25026914-25026933 | Msa1241450:intron | 40.0% | |
| CTTTCCTGCAAACATGGTTT+AGG | - | chr8_2:25027286-25027305 | None:intergenic | 40.0% | |
| ACAGTGATGAAGAAGCTAAG+AGG | + | chr8_2:25027327-25027346 | Msa1241450:CDS | 40.0% | |
| CAGTGATGAAGAAGCTAAGA+GGG | + | chr8_2:25027328-25027347 | Msa1241450:CDS | 40.0% | |
| AGTGATGAAGAAGCTAAGAG+GGG | + | chr8_2:25027329-25027348 | Msa1241450:CDS | 40.0% | |
| GGGGCTTTCACACTAATATA+AGG | - | chr8_2:25027376-25027395 | None:intergenic | 40.0% | |
| CTTCTATTCCAGCTTGAGTT+GGG | + | chr8_2:25027809-25027828 | Msa1241450:intron | 40.0% | |
| AGTGAGTCAGAGTTATCAAC+AGG | - | chr8_2:25028055-25028074 | None:intergenic | 40.0% | |
| GATGAAGATTATGACGAGGA+AGG | + | chr8_2:25028322-25028341 | Msa1241450:CDS | 40.0% | |
| GTAAATTGTAGTCTTCGGGA+GGG | + | chr8_2:25028345-25028364 | Msa1241450:exon | 40.0% | |
| TAAATTGTAGTCTTCGGGAG+GGG | + | chr8_2:25028346-25028365 | Msa1241450:exon | 40.0% | |
| GTTAAGACTTGCAGTTCCAA+TGG | - | chr8_2:25028631-25028650 | None:intergenic | 40.0% | |
| AGAGCGGTGTGTCTCTATAA+TGG | + | chr8_2:25026427-25026446 | Msa1241450:intron | 45.0% | |
| CAATATCTGCAGCCAATGAG+CGG | + | chr8_2:25026741-25026760 | Msa1241450:intron | 45.0% | |
| TCTGAAGGATGTAGTCAGCA+AGG | + | chr8_2:25027119-25027138 | Msa1241450:CDS | 45.0% | |
| TGCACCTAAACCATGTTTGC+AGG | + | chr8_2:25027279-25027298 | Msa1241450:intron | 45.0% | |
| CCAACTCAAGCTGGAATAGA+AGG | - | chr8_2:25027811-25027830 | None:intergenic | 45.0% | |
| CCTTCTATTCCAGCTTGAGT+TGG | + | chr8_2:25027808-25027827 | Msa1241450:intron | 45.0% | |
| AGGACGAGCTATTCAAAGAG+AGG | + | chr8_2:25027895-25027914 | Msa1241450:CDS | 45.0% | |
| GGACGAGCTATTCAAAGAGA+GGG | + | chr8_2:25027896-25027915 | Msa1241450:CDS | 45.0% | |
| TCAAAGAGAGGGACATCATC+AGG | + | chr8_2:25027907-25027926 | Msa1241450:CDS | 45.0% | |
| ! | ACTTGCTGAACAGAAGGACA+AGG | - | chr8_2:25027947-25027966 | None:intergenic | 45.0% |
| !! | TGGCTAACTTGCTGAACAGA+AGG | - | chr8_2:25027953-25027972 | None:intergenic | 45.0% |
| ATTAGCGGCTTCAGGATTAG+CGG | - | chr8_2:25028167-25028186 | None:intergenic | 45.0% | |
| TCATGATGACTGCTGTCTGT+TGG | - | chr8_2:25028211-25028230 | None:intergenic | 45.0% | |
| ATCATGAAGAAATTCCGGGC+TGG | + | chr8_2:25028224-25028243 | Msa1241450:CDS | 45.0% | |
| CATCTTGTCCACCTCAGAAA+GGG | - | chr8_2:25028251-25028270 | None:intergenic | 45.0% | |
| GGTAAATTGTAGTCTTCGGG+AGG | + | chr8_2:25028344-25028363 | Msa1241450:exon | 45.0% | |
| AAATTGTAGTCTTCGGGAGG+GGG | + | chr8_2:25028347-25028366 | Msa1241450:exon | 45.0% | |
| TGTCACATGAGACCGCTCAT+TGG | - | chr8_2:25026756-25026775 | None:intergenic | 50.0% | |
| GTCAGCAAGGTTCCTGACTA+CGG | + | chr8_2:25027132-25027151 | Msa1241450:CDS | 50.0% | |
| CATCAGTATGGCCATGACCA+TGG | - | chr8_2:25027158-25027177 | None:intergenic | 50.0% | |
| CTGCAGCTTTCCTGCAAACA+TGG | - | chr8_2:25027292-25027311 | None:intergenic | 50.0% | |
| CATGTTTGCAGGAAAGCTGC+AGG | + | chr8_2:25027290-25027309 | Msa1241450:intron | 50.0% | |
| AGGAAAGCTGCAGGTGATGA+TGG | + | chr8_2:25027299-25027318 | Msa1241450:intron | 50.0% | |
| AGAAGCTAAGAGGGGCAAGA+TGG | + | chr8_2:25027337-25027356 | Msa1241450:CDS | 50.0% | |
| CTCTTCCTCTTCCTCTACCT+CGG | - | chr8_2:25027865-25027884 | None:intergenic | 50.0% | |
| AGAAGGACAAGGCTCAGACT+CGG | - | chr8_2:25027936-25027955 | None:intergenic | 50.0% | |
| ! | GCTTCAGGATTAGCGGCTTT+GGG | - | chr8_2:25028160-25028179 | None:intergenic | 50.0% |
| TTCAGAGACAGGGGGATTAG+CGG | - | chr8_2:25028182-25028201 | None:intergenic | 50.0% | |
| TTGGAGGAGGTTCAGAGACA+GGG | - | chr8_2:25028192-25028211 | None:intergenic | 50.0% | |
| TGATGACTGCTGTCTGTTGG+AGG | - | chr8_2:25028208-25028227 | None:intergenic | 50.0% | |
| CCATCTTGTCCACCTCAGAA+AGG | - | chr8_2:25028252-25028271 | None:intergenic | 50.0% | |
| !! | CCTTTCTGAGGTGGACAAGA+TGG | + | chr8_2:25028249-25028268 | Msa1241450:CDS | 50.0% |
| GGCAAGCTGCATCGAATCAA+TGG | - | chr8_2:25028275-25028294 | None:intergenic | 50.0% | |
| ATCCATTCGCGTACCAAGCT+GGG | - | chr8_2:25028296-25028315 | None:intergenic | 50.0% | |
| AAGGTTCCTGACTACGGCCA+TGG | + | chr8_2:25027138-25027157 | Msa1241450:CDS | 55.0% | |
| GGTCATGGCCATACTGATGC+TGG | + | chr8_2:25027159-25027178 | Msa1241450:CDS | 55.0% | |
| CATGGCCATACTGATGCTGG+TGG | + | chr8_2:25027162-25027181 | Msa1241450:CDS | 55.0% | |
| CAGCACCACCAGCATCAGTA+TGG | - | chr8_2:25027170-25027189 | None:intergenic | 55.0% | |
| TAGTGTGGCCCAACTCAAGC+TGG | - | chr8_2:25027820-25027839 | None:intergenic | 55.0% | |
| CCACACTAGCCCTACTGGTA+GGG | + | chr8_2:25027832-25027851 | Msa1241450:CDS | 55.0% | |
| CACACTAGCCCTACTGGTAG+GGG | + | chr8_2:25027833-25027852 | Msa1241450:CDS | 55.0% | |
| CGAGGTAGAGGAAGAGGAAG+AGG | + | chr8_2:25027863-25027882 | Msa1241450:CDS | 55.0% | |
| AGAGGAAGAGGAAGAGGACG+AGG | + | chr8_2:25027869-25027888 | Msa1241450:CDS | 55.0% | |
| ! | GGCTTCAGGATTAGCGGCTT+TGG | - | chr8_2:25028161-25028180 | None:intergenic | 55.0% |
| TGGAGGAGGTTCAGAGACAG+GGG | - | chr8_2:25028191-25028210 | None:intergenic | 55.0% | |
| GTTGGAGGAGGTTCAGAGAC+AGG | - | chr8_2:25028193-25028212 | None:intergenic | 55.0% | |
| TGACTGCTGTCTGTTGGAGG+AGG | - | chr8_2:25028205-25028224 | None:intergenic | 55.0% | |
| CATCCATTCGCGTACCAAGC+TGG | - | chr8_2:25028297-25028316 | None:intergenic | 55.0% | |
| CCATGACCATGGCCGTAGTC+AGG | - | chr8_2:25027147-25027166 | None:intergenic | 60.0% | |
| CCTGACTACGGCCATGGTCA+TGG | + | chr8_2:25027144-25027163 | Msa1241450:CDS | 60.0% | |
| TTGGGCCACACTAGCCCTAC+TGG | + | chr8_2:25027827-25027846 | Msa1241450:CDS | 60.0% | |
| GCCACACTAGCCCTACTGGT+AGG | + | chr8_2:25027831-25027850 | Msa1241450:CDS | 60.0% | |
| ! | CCCTACCAGTAGGGCTAGTG+TGG | - | chr8_2:25027835-25027854 | None:intergenic | 60.0% |
| AGCCCTACTGGTAGGGGAAG+AGG | + | chr8_2:25027839-25027858 | Msa1241450:CDS | 60.0% | |
| GGCCTCTTCCCCTACCAGTA+GGG | - | chr8_2:25027844-25027863 | None:intergenic | 60.0% | |
| AGAGGCCGAGGTAGAGGAAG+AGG | + | chr8_2:25027857-25027876 | Msa1241450:CDS | 60.0% | |
| AGAGGAAGAGGACGAGGTCG+AGG | + | chr8_2:25027875-25027894 | Msa1241450:CDS | 60.0% | |
| ! | ACAGGGGGATTAGCGGCTTC+AGG | - | chr8_2:25028175-25028194 | None:intergenic | 60.0% |
| GGAGGAGGTTCAGAGACAGG+GGG | - | chr8_2:25028190-25028209 | None:intergenic | 60.0% | |
| ACCTCAGAAAGGGACCAGCC+CGG | - | chr8_2:25028241-25028260 | None:intergenic | 60.0% | |
| TCGATGCAGCTTGCCCAGCT+TGG | + | chr8_2:25028280-25028299 | Msa1241450:CDS | 60.0% | |
| TGCCCAGCTTGGTACGCGAA+TGG | + | chr8_2:25028291-25028310 | Msa1241450:CDS | 60.0% | |
| CGGCCTCTTCCCCTACCAGT+AGG | - | chr8_2:25027845-25027864 | None:intergenic | 65.0% | |
| ACTGGTAGGGGAAGAGGCCG+AGG | + | chr8_2:25027845-25027864 | Msa1241450:CDS | 65.0% | |
| AGGGGAAGAGGCCGAGGTAG+AGG | + | chr8_2:25027851-25027870 | Msa1241450:CDS | 65.0% | |
| !! | TCCGGGCTGGTCCCTTTCTG+AGG | + | chr8_2:25028237-25028256 | Msa1241450:CDS | 65.0% |
| !! | GGGCTGGTCCCTTTCTGAGG+TGG | + | chr8_2:25028240-25028259 | Msa1241450:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 25025985 | 25028715 | 25025985 | ID=Msa1241450;Name=Msa1241450 |
| chr8_2 | mRNA | 25025985 | 25028715 | 25025985 | ID=Msa1241450-mRNA-1;Parent=Msa1241450;Name=Msa1241450-mRNA-1;_AED=0.04;_eAED=0.04;_QI=133|1|1|1|1|1|5|367|288 |
| chr8_2 | exon | 25025985 | 25026172 | 25025985 | ID=Msa1241450-mRNA-1:exon:8829;Parent=Msa1241450-mRNA-1 |
| chr8_2 | exon | 25026262 | 25026355 | 25026262 | ID=Msa1241450-mRNA-1:exon:8830;Parent=Msa1241450-mRNA-1 |
| chr8_2 | exon | 25027083 | 25027214 | 25027083 | ID=Msa1241450-mRNA-1:exon:8831;Parent=Msa1241450-mRNA-1 |
| chr8_2 | exon | 25027301 | 25027358 | 25027301 | ID=Msa1241450-mRNA-1:exon:8832;Parent=Msa1241450-mRNA-1 |
| chr8_2 | exon | 25027821 | 25028715 | 25027821 | ID=Msa1241450-mRNA-1:exon:8833;Parent=Msa1241450-mRNA-1 |
| chr8_2 | five_prime_UTR | 25025985 | 25026117 | 25025985 | ID=Msa1241450-mRNA-1:five_prime_utr;Parent=Msa1241450-mRNA-1 |
| chr8_2 | CDS | 25026118 | 25026172 | 25026118 | ID=Msa1241450-mRNA-1:cds;Parent=Msa1241450-mRNA-1 |
| chr8_2 | CDS | 25026262 | 25026355 | 25026262 | ID=Msa1241450-mRNA-1:cds;Parent=Msa1241450-mRNA-1 |
| chr8_2 | CDS | 25027083 | 25027214 | 25027083 | ID=Msa1241450-mRNA-1:cds;Parent=Msa1241450-mRNA-1 |
| chr8_2 | CDS | 25027301 | 25027358 | 25027301 | ID=Msa1241450-mRNA-1:cds;Parent=Msa1241450-mRNA-1 |
| chr8_2 | CDS | 25027821 | 25028348 | 25027821 | ID=Msa1241450-mRNA-1:cds;Parent=Msa1241450-mRNA-1 |
| chr8_2 | three_prime_UTR | 25028349 | 25028715 | 25028349 | ID=Msa1241450-mRNA-1:three_prime_utr;Parent=Msa1241450-mRNA-1 |
| Gene Sequence |
| Protein sequence |
