Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1242320 | XP_003628237.1 | 98.343 | 181 | 3 | 0 | 14 | 194 | 1 | 181 | 1.95e-127 | 366 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1242320 | sp|P46287|RL11_MEDSA | 98.343 | 181 | 3 | 0 | 14 | 194 | 1 | 181 | 2.66e-130 | 366 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1242320 | G7L8I9 | 98.343 | 181 | 3 | 0 | 14 | 194 | 1 | 181 | 9.33e-128 | 366 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1188260 | Msa1242320 | 0.827929 | 1.192084e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1242320 | MtrunA17_Chr8g0355901 | 98.343 | 181 | 3 | 0 | 14 | 194 | 1 | 181 | 1.80e-131 | 366 |
| Msa1242320 | MtrunA17_Chr3g0078591 | 98.333 | 180 | 3 | 0 | 15 | 194 | 3 | 182 | 1.08e-130 | 364 |
| Msa1242320 | MtrunA17_Chr4g0041531 | 97.238 | 181 | 5 | 0 | 14 | 194 | 1 | 181 | 1.37e-130 | 363 |
| Msa1242320 | MtrunA17_Chr3g0078581 | 81.818 | 143 | 26 | 0 | 51 | 193 | 2 | 144 | 4.29e-84 | 245 |
| Msa1242320 | MtrunA17_Chr7g0264261 | 85.714 | 42 | 6 | 0 | 14 | 55 | 1 | 42 | 6.55e-17 | 72.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1242320 | AT2G42740.1 | 95.580 | 181 | 8 | 0 | 14 | 194 | 1 | 181 | 5.75e-128 | 357 |
| Msa1242320 | AT4G18730.1 | 95.028 | 181 | 9 | 0 | 14 | 194 | 1 | 181 | 2.67e-127 | 356 |
| Msa1242320 | AT3G58700.1 | 95.028 | 181 | 9 | 0 | 14 | 194 | 1 | 181 | 2.67e-127 | 356 |
| Msa1242320 | AT5G45775.2 | 95.028 | 181 | 9 | 0 | 14 | 194 | 1 | 181 | 2.67e-127 | 356 |
| Msa1242320 | AT5G45775.1 | 95.906 | 171 | 7 | 0 | 24 | 194 | 1 | 171 | 2.81e-121 | 340 |
Find 63 sgRNAs with CRISPR-Local
Find 207 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATCCTTCAACTGGTATTTA+TGG | 0.121344 | 8_2:-26552446 | Msa1242320:CDS |
| TTTCACCAACAGAGATATTA+AGG | 0.278034 | 8_2:+26555311 | None:intergenic |
| GCTTGCTATGTGACTGTTAG+AGG | 0.280983 | 8_2:-26553097 | Msa1242320:CDS |
| TTTAGTGATACCGGTTGTTT+TGG | 0.285925 | 8_2:-26553007 | Msa1242320:CDS |
| TAAAATTACCTTTGCAGCTC+TGG | 0.312435 | 8_2:+26555273 | None:intergenic |
| AGATACACCGTCCGTTCTTT+TGG | 0.314871 | 8_2:-26553142 | Msa1242320:CDS |
| TGACAAGGCAATGCAGCTTT+TGG | 0.318529 | 8_2:-26553074 | Msa1242320:CDS |
| ACGACGTCCCACACGGTAAC+CGG | 0.325434 | 8_2:+26552394 | None:intergenic |
| CTTTGGAAAACACTGGGGTT+TGG | 0.360701 | 8_2:+26555158 | None:intergenic |
| GAGGTTGTTGTTGTGCCATT+TGG | 0.362192 | 8_2:+26555501 | None:intergenic |
| AGGTTGTTGTTGTGCCATTT+GGG | 0.378956 | 8_2:+26555502 | None:intergenic |
| CGATGCCATGAAGTGGTTCC+AGG | 0.381480 | 8_2:-26552324 | Msa1242320:CDS |
| TTGTTGTCTCAACTATGAAT+TGG | 0.391817 | 8_2:-26552173 | Msa1242320:three_prime_UTR |
| TTTCACCTGGAACCACTTCA+TGG | 0.397811 | 8_2:+26552319 | None:intergenic |
| CTCAGGTATGATCCTTCAAC+TGG | 0.410746 | 8_2:-26552455 | Msa1242320:intron |
| CTTCCGTTTCCAACCTCAAA+TGG | 0.415309 | 8_2:-26555477 | Msa1242320:intron |
| TATTCAGGAGCATATTGATC+TGG | 0.422822 | 8_2:-26552978 | Msa1242320:CDS |
| TCATAGTTGAGACAACAAAA+AGG | 0.427589 | 8_2:+26552178 | None:intergenic |
| AGGCGATTGTTTAGTTACTT+AGG | 0.435845 | 8_2:-26552268 | Msa1242320:exon |
| AAAAGAAAGCGTACCATTTG+AGG | 0.439221 | 8_2:+26555464 | None:intergenic |
| TTCGTTGTTCTGGAGCGTCC+CGG | 0.445136 | 8_2:-26552413 | Msa1242320:CDS |
| GTTGTTGTGCCATTTGGGAT+TGG | 0.453869 | 8_2:+26555507 | None:intergenic |
| CGTCGGTGCAAGGCTCGTGT+TGG | 0.455767 | 8_2:-26552371 | Msa1242320:CDS |
| CTTCCGTTTCCAATCCCAAA+TGG | 0.466448 | 8_2:-26555516 | Msa1242320:exon |
| CGTCCTTTGTTACGCGATGT+TGG | 0.468785 | 8_2:+26552345 | None:intergenic |
| GTCGGTGCAAGGCTCGTGTT+GGG | 0.471084 | 8_2:-26552370 | Msa1242320:CDS |
| TTCAACTGGTATTTATGGAA+TGG | 0.482662 | 8_2:-26552441 | Msa1242320:CDS |
| AATATCTCTGTTGGTGAAAG+TGG | 0.486029 | 8_2:-26555307 | Msa1242320:CDS |
| ATTCCATAAATACCAGTTGA+AGG | 0.490800 | 8_2:+26552443 | None:intergenic |
| GGAGAGTGGTTTGAAGGTGA+AGG | 0.491764 | 8_2:-26553053 | Msa1242320:CDS |
| CTGAACCTTGATATCCCTCA+TGG | 0.500440 | 8_2:+26555342 | None:intergenic |
| AATAAACCTTTGGAAAACAC+TGG | 0.500470 | 8_2:+26555151 | None:intergenic |
| GTACCATTTGAGGTTGGAAA+CGG | 0.514068 | 8_2:+26555474 | None:intergenic |
| GGGACGTCGTCGTCGGTGCA+AGG | 0.515936 | 8_2:-26552381 | Msa1242320:CDS |
| CGACGTCCCACACGGTAACC+GGG | 0.517440 | 8_2:+26552395 | None:intergenic |
| CTCGTCCTTAATATCTCTGT+TGG | 0.521941 | 8_2:-26555316 | Msa1242320:CDS |
| ATAAACCTTTGGAAAACACT+GGG | 0.526168 | 8_2:+26555152 | None:intergenic |
| CAATCGCCTGTGACTTGTTG+AGG | 0.534551 | 8_2:+26552282 | None:intergenic |
| AATACCGAATCCAAAACAAC+CGG | 0.535665 | 8_2:+26552997 | None:intergenic |
| GAAAGCGTACCATTTGAGGT+TGG | 0.546416 | 8_2:+26555468 | None:intergenic |
| GAACACCATGAGGGATATCA+AGG | 0.552248 | 8_2:-26555347 | Msa1242320:CDS |
| ATTCAGGAGCATATTGATCT+GGG | 0.553824 | 8_2:-26552977 | Msa1242320:CDS |
| TGGTTCCAGGTGAAATATGA+AGG | 0.565205 | 8_2:-26552311 | Msa1242320:CDS |
| TTCTTCTAATACCAAAAGAA+CGG | 0.565907 | 8_2:+26553131 | None:intergenic |
| ACCGTGTGGGACGTCGTCGT+CGG | 0.567737 | 8_2:-26552388 | Msa1242320:CDS |
| TCGTCTCACCAGAGCTGCAA+AGG | 0.570040 | 8_2:-26555281 | Msa1242320:intron |
| GTGCCATTTGGGATTGGAAA+CGG | 0.570169 | 8_2:+26555513 | None:intergenic |
| GAGCGTCCCGGTTACCGTGT+GGG | 0.573313 | 8_2:-26552401 | Msa1242320:CDS |
| GATTGGAAACGGAAGAAGAG+AGG | 0.576166 | 8_2:+26555524 | None:intergenic |
| TAACACCTTCATATTTCACC+TGG | 0.578904 | 8_2:+26552306 | None:intergenic |
| TGTTATCCTCAACAAGTCAC+AGG | 0.598472 | 8_2:-26552288 | Msa1242320:CDS |
| GATCCAACATCGCGTAACAA+AGG | 0.602047 | 8_2:-26552348 | Msa1242320:CDS |
| GGAGCGTCCCGGTTACCGTG+TGG | 0.619085 | 8_2:-26552402 | Msa1242320:CDS |
| TGAGGTTGGAAACGGAAGAG+AGG | 0.621017 | 8_2:+26555482 | None:intergenic |
| TCTAATACCAAAAGAACGGA+CGG | 0.628670 | 8_2:+26553135 | None:intergenic |
| CAAAGGACGATGCCATGAAG+TGG | 0.630614 | 8_2:-26552331 | Msa1242320:CDS |
| AGAAACTCTCGAACACCATG+AGG | 0.653183 | 8_2:-26555357 | Msa1242320:CDS |
| ACCGACGACGACGTCCCACA+CGG | 0.654712 | 8_2:+26552387 | None:intergenic |
| TGTGACTGTTAGAGGTGACA+AGG | 0.658203 | 8_2:-26553089 | Msa1242320:CDS |
| TGATGTGATGTGATGTGATG+CGG | 0.668917 | 8_2:+26555550 | None:intergenic |
| TAAACCTTTGGAAAACACTG+GGG | 0.679293 | 8_2:+26555153 | None:intergenic |
| GAAACTCTCGAACACCATGA+GGG | 0.686507 | 8_2:-26555356 | Msa1242320:CDS |
| CAGGTGTTGGAACAACTCAG+TGG | 0.734121 | 8_2:-26555181 | Msa1242320:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTCTTTTTTACTAAA+AGG | - | chr8_2:26553465-26553484 | Msa1242320:intron | 10.0% |
| !! | GCAAAATAATAAAAATAAAT+TGG | + | chr8_2:26554272-26554291 | None:intergenic | 10.0% |
| !!! | TTTCATTTTTTGTATATATC+AGG | - | chr8_2:26552437-26552456 | Msa1242320:CDS | 15.0% |
| !! | CAAAATTAAAAATAAACCTT+TGG | + | chr8_2:26552499-26552518 | None:intergenic | 15.0% |
| !!! | TAGATGATTTTAATAGTTTA+GGG | - | chr8_2:26552823-26552842 | Msa1242320:intron | 15.0% |
| !! | AACTATTAAAATCAAAATCA+AGG | + | chr8_2:26552929-26552948 | None:intergenic | 15.0% |
| !!! | ATTTTGATTTTAATAGTTGA+GGG | - | chr8_2:26552931-26552950 | Msa1242320:intron | 15.0% |
| !! | TATTCTTGTATATTTGAATA+AGG | - | chr8_2:26553002-26553021 | Msa1242320:CDS | 15.0% |
| !!! | TATGATTGTTTATAAGTTTT+AGG | - | chr8_2:26554002-26554021 | Msa1242320:intron | 15.0% |
| !! | TTTAATGAGAATTAATCTTA+AGG | - | chr8_2:26554044-26554063 | Msa1242320:intron | 15.0% |
| !! | TTAATGAGAATTAATCTTAA+GGG | - | chr8_2:26554045-26554064 | Msa1242320:intron | 15.0% |
| !!! | ATTTTCGTTTTTTTTCTTTT+TGG | - | chr8_2:26554467-26554486 | Msa1242320:intron | 15.0% |
| !!! | AAAAAGTTTTACATAATTCT+AGG | - | chr8_2:26554958-26554977 | Msa1242320:intron | 15.0% |
| !!! | CAAAAATAAATACTTTAAGA+CGG | + | chr8_2:26555437-26555456 | None:intergenic | 15.0% |
| !! | TAGAAAAAATCATAATGATT+CGG | - | chr8_2:26555531-26555550 | Msa1242320:five_prime_UTR | 15.0% |
| !! | AATCAATATCCTAAAGTTTA+GGG | - | chr8_2:26552627-26552646 | Msa1242320:intron | 20.0% |
| !! | AACTATTAAAATCACCTAAA+AGG | - | chr8_2:26552718-26552737 | Msa1242320:intron | 20.0% |
| !!! | CTAGATGATTTTAATAGTTT+AGG | - | chr8_2:26552822-26552841 | Msa1242320:intron | 20.0% |
| !! | TAAATTGACTGTTAATTCTA+GGG | - | chr8_2:26552877-26552896 | Msa1242320:intron | 20.0% |
| !!! | GATTTTGATTTTAATAGTTG+AGG | - | chr8_2:26552930-26552949 | Msa1242320:intron | 20.0% |
| !!! | TTTTGATTTTAATAGTTGAG+GGG | - | chr8_2:26552932-26552951 | Msa1242320:intron | 20.0% |
| !! | TTGAATGGTAATAAAAATTG+AGG | - | chr8_2:26553074-26553093 | Msa1242320:CDS | 20.0% |
| !! | TGAATGGTAATAAAAATTGA+GGG | - | chr8_2:26553075-26553094 | Msa1242320:CDS | 20.0% |
| !! | TGATTTGAATGAGAATAAAA+TGG | - | chr8_2:26553558-26553577 | Msa1242320:intron | 20.0% |
| !! | CATTTAGAAAACAAATGTTA+AGG | + | chr8_2:26553727-26553746 | None:intergenic | 20.0% |
| !! | CTTAAATTAAAATGCCTAAA+TGG | - | chr8_2:26553791-26553810 | Msa1242320:intron | 20.0% |
| !! | ATTACTATTCTATTTGATAC+TGG | - | chr8_2:26553887-26553906 | Msa1242320:intron | 20.0% |
| !! | TTACTATTCTATTTGATACT+GGG | - | chr8_2:26553888-26553907 | Msa1242320:intron | 20.0% |
| !! | AAGAGGAAAAAAAAAAAACA+AGG | + | chr8_2:26553932-26553951 | None:intergenic | 20.0% |
| !!! | TATTATTTTGCCTTGAAAAT+TGG | - | chr8_2:26554281-26554300 | Msa1242320:intron | 20.0% |
| !!! | TTTTCATATCTATTAAATGC+TGG | - | chr8_2:26554432-26554451 | Msa1242320:intron | 20.0% |
| !! | TTTCATATCTATTAAATGCT+GGG | - | chr8_2:26554433-26554452 | Msa1242320:intron | 20.0% |
| !!! | AAAATTTGAAATTCAGTCTT+TGG | - | chr8_2:26555061-26555080 | Msa1242320:intron | 20.0% |
| !! | AACATAAATCATAACAAACT+TGG | + | chr8_2:26555147-26555166 | None:intergenic | 20.0% |
| !!! | TGCAAGTTTTGTTAATTATA+TGG | - | chr8_2:26555410-26555429 | Msa1242320:intron | 20.0% |
| !! | TTTTTGTATATATCAGGTGT+TGG | - | chr8_2:26552443-26552462 | Msa1242320:CDS | 25.0% |
| ! | GAATCAATATCCTAAAGTTT+AGG | - | chr8_2:26552626-26552645 | Msa1242320:intron | 25.0% |
| ! | CTAAATTGACTGTTAATTCT+AGG | - | chr8_2:26552876-26552895 | Msa1242320:intron | 25.0% |
| !!! | GATCTAGTTTAAGTTTTGAA+TGG | - | chr8_2:26553059-26553078 | Msa1242320:CDS | 25.0% |
| !! | TTCTTCTGGTATTTTCATTT+AGG | + | chr8_2:26553165-26553184 | None:intergenic | 25.0% |
| ! | AAAACAACCAAAAACTTTCA+AGG | + | chr8_2:26553191-26553210 | None:intergenic | 25.0% |
| ! | GTGTAATTCATGTTTAATAG+TGG | - | chr8_2:26553282-26553301 | Msa1242320:intron | 25.0% |
| ! | ATCAATGTAGTGAAAAACAT+TGG | + | chr8_2:26553351-26553370 | None:intergenic | 25.0% |
| ! | TGAATGAGAATAAAATGGAA+AGG | - | chr8_2:26553563-26553582 | Msa1242320:intron | 25.0% |
| ! | GAATGAGAATAAAATGGAAA+GGG | - | chr8_2:26553564-26553583 | Msa1242320:intron | 25.0% |
| !!! | CTGTTGACTCAATTATAAAA+TGG | + | chr8_2:26553592-26553611 | None:intergenic | 25.0% |
| !!! | TTCGTCTGGTATTTTAATTT+AGG | + | chr8_2:26553654-26553673 | None:intergenic | 25.0% |
| ! | AAAACAACCAAAAACTTTCA+AGG | + | chr8_2:26553191-26553210 | None:intergenic | 25.0% |
| ! | TACTATTCTATTTGATACTG+GGG | - | chr8_2:26553889-26553908 | Msa1242320:intron | 25.0% |
| ! | ACACTGTACATGAATATTAT+AGG | - | chr8_2:26553971-26553990 | Msa1242320:intron | 25.0% |
| !! | AAAACAACCAAAAGTTTTCA+TGG | + | chr8_2:26554158-26554177 | None:intergenic | 25.0% |
| !!! | TTTTCAAGTCACAATAATCT+GGG | - | chr8_2:26554174-26554193 | Msa1242320:intron | 25.0% |
| ! | AAAAACGAAAATCAGTTAAC+TGG | + | chr8_2:26554459-26554478 | None:intergenic | 25.0% |
| ! | TTCTTCTAATACCAAAAGAA+CGG | + | chr8_2:26554509-26554528 | None:intergenic | 25.0% |
| !!! | AGAAGAAATTTTAGTGATAC+CGG | - | chr8_2:26554621-26554640 | Msa1242320:intron | 25.0% |
| !! | TTGTTTAAAACAGTTTCACA+TGG | + | chr8_2:26554794-26554813 | None:intergenic | 25.0% |
| ! | ATAAATCATAACAAACTTGG+TGG | + | chr8_2:26555144-26555163 | None:intergenic | 25.0% |
| !! | TTTAACATTGTTTCTTTCTC+AGG | - | chr8_2:26555165-26555184 | Msa1242320:CDS | 25.0% |
| GGAATGAAAATCAGAAAGAA+TGG | + | chr8_2:26552199-26552218 | None:intergenic | 30.0% | |
| ! | CGAAAAATGCATTTTCTTAC+AGG | - | chr8_2:26552248-26552267 | Msa1242320:three_prime_UTR | 30.0% |
| ! | ATGCATTTTCTTACAGGTTT+CGG | - | chr8_2:26552254-26552273 | Msa1242320:three_prime_UTR | 30.0% |
| TTTCACCAACAGAGATATTA+AGG | + | chr8_2:26552329-26552348 | None:intergenic | 30.0% | |
| ! | ATAAACCTTTGGAAAACACT+GGG | + | chr8_2:26552488-26552507 | None:intergenic | 30.0% |
| ! | AATAAACCTTTGGAAAACAC+TGG | + | chr8_2:26552489-26552508 | None:intergenic | 30.0% |
| !! | TTGATAGTGTTTGAGTCTTA+AGG | - | chr8_2:26552598-26552617 | Msa1242320:intron | 30.0% |
| TACAATCAACCCTAAACTTT+AGG | + | chr8_2:26552639-26552658 | None:intergenic | 30.0% | |
| ! | GTACATTTTATGGACCTTTT+AGG | + | chr8_2:26552735-26552754 | None:intergenic | 30.0% |
| !! | AGGATGAGAAGTACATTTTA+TGG | + | chr8_2:26552745-26552764 | None:intergenic | 30.0% |
| TATGACTGTTCTTAGTGTTA+TGG | - | chr8_2:26553032-26553051 | Msa1242320:CDS | 30.0% | |
| TATTATAATGAGTCAACAGC+AGG | - | chr8_2:26553104-26553123 | Msa1242320:CDS | 30.0% | |
| ATTATAATGAGTCAACAGCA+GGG | - | chr8_2:26553105-26553124 | Msa1242320:CDS | 30.0% | |
| ! | AGAAGATCCTTGAAAGTTTT+TGG | - | chr8_2:26553181-26553200 | Msa1242320:intron | 30.0% |
| !! | GTTTTCAAGACACAATTATC+TGG | - | chr8_2:26553206-26553225 | Msa1242320:intron | 30.0% |
| !!! | AGTATTTTTTTGCTGCACAA+AGG | - | chr8_2:26553397-26553416 | Msa1242320:intron | 30.0% |
| !!! | TGATAGTTTTGTGTATGGAT+AGG | - | chr8_2:26553490-26553509 | Msa1242320:intron | 30.0% |
| TTTATAATTGAGTCAACAGC+AGG | - | chr8_2:26553593-26553612 | Msa1242320:intron | 30.0% | |
| TTATAATTGAGTCAACAGCA+GGG | - | chr8_2:26553594-26553613 | Msa1242320:intron | 30.0% | |
| !!! | ATTTTAATTTAGGCTCCAAG+CGG | + | chr8_2:26553644-26553663 | None:intergenic | 30.0% |
| !! | GTTTTCAAGACACAATTATC+TGG | - | chr8_2:26553206-26553225 | Msa1242320:intron | 30.0% |
| ACAGTTTCAACTCAAAACAT+GGG | + | chr8_2:26553817-26553836 | None:intergenic | 30.0% | |
| AACAGTTTCAACTCAAAACA+TGG | + | chr8_2:26553818-26553837 | None:intergenic | 30.0% | |
| AAAACTTGATTTAGCATGCA+GGG | + | chr8_2:26553858-26553877 | None:intergenic | 30.0% | |
| ACTATTCTATTTGATACTGG+GGG | - | chr8_2:26553890-26553909 | Msa1242320:intron | 30.0% | |
| TATTATATTTGAGTCACAGC+AGG | - | chr8_2:26554071-26554090 | Msa1242320:intron | 30.0% | |
| ATTATATTTGAGTCACAGCA+GGG | - | chr8_2:26554072-26554091 | Msa1242320:intron | 30.0% | |
| ! | TTCTTCTGGTATTTTCGTTT+AGG | + | chr8_2:26554132-26554151 | None:intergenic | 30.0% |
| ! | AGAAGATCCATGAAAACTTT+TGG | - | chr8_2:26554148-26554167 | Msa1242320:intron | 30.0% |
| !!! | GTTTTCAAGTCACAATAATC+TGG | - | chr8_2:26554173-26554192 | Msa1242320:intron | 30.0% |
| ! | TTTCAAGTCACAATAATCTG+GGG | - | chr8_2:26554175-26554194 | Msa1242320:intron | 30.0% |
| ! | ATATCGTCAACCAATTTTCA+AGG | + | chr8_2:26554294-26554313 | None:intergenic | 30.0% |
| TTGAAAATTGGTTGACGATA+TGG | - | chr8_2:26554293-26554312 | Msa1242320:intron | 30.0% | |
| AGATATGAAAACTTGACGAT+CGG | + | chr8_2:26554423-26554442 | None:intergenic | 30.0% | |
| TTGTTTATACCAGTTTCACA+TGG | + | chr8_2:26554755-26554774 | None:intergenic | 30.0% | |
| TAATGATTCAGTTCTTCAAG+AGG | - | chr8_2:26554854-26554873 | Msa1242320:intron | 30.0% | |
| AGTTCTTCAAGAGGAAATTA+TGG | - | chr8_2:26554863-26554882 | Msa1242320:intron | 30.0% | |
| AAATTATGGCTAAAGCTATC+AGG | - | chr8_2:26554877-26554896 | Msa1242320:intron | 30.0% | |
| TTGTTTATCACAATGCATGT+TGG | - | chr8_2:26554985-26555004 | Msa1242320:intron | 30.0% | |
| ACGTAAAAATCGGATTAACT+CGG | + | chr8_2:26555023-26555042 | None:intergenic | 30.0% | |
| GCTTAAAGAGACGTAAAAAT+CGG | + | chr8_2:26555033-26555052 | None:intergenic | 30.0% | |
| GCTTAAAGACTGAAATGATA+AGG | + | chr8_2:26555090-26555109 | None:intergenic | 30.0% | |
| GATGGAATATCATCAGAAAT+CGG | + | chr8_2:26555120-26555139 | None:intergenic | 30.0% | |
| ATTCCATAAATACCAGTTGA+AGG | + | chr8_2:26555197-26555216 | None:intergenic | 30.0% | |
| TTCAACTGGTATTTATGGAA+TGG | - | chr8_2:26555196-26555215 | Msa1242320:intron | 30.0% | |
| TCATAGTTGAGACAACAAAA+AGG | + | chr8_2:26555462-26555481 | None:intergenic | 30.0% | |
| TTGTTGTCTCAACTATGAAT+TGG | - | chr8_2:26555464-26555483 | Msa1242320:intron | 30.0% | |
| ! | AAAAGAAAGCGTACCATTTG+AGG | + | chr8_2:26552176-26552195 | None:intergenic | 35.0% |
| GACAACAACAACAACAACAA+AGG | + | chr8_2:26552220-26552239 | None:intergenic | 35.0% | |
| ! | AATATCTCTGTTGGTGAAAG+TGG | - | chr8_2:26552330-26552349 | Msa1242320:CDS | 35.0% |
| TAAAATTACCTTTGCAGCTC+TGG | + | chr8_2:26552367-26552386 | None:intergenic | 35.0% | |
| ! | TAAACCTTTGGAAAACACTG+GGG | + | chr8_2:26552487-26552506 | None:intergenic | 35.0% |
| GTACTTCTCATCCTTCAATT+TGG | - | chr8_2:26552751-26552770 | Msa1242320:intron | 35.0% | |
| ! | TCCTTCAATTTGGTTTCCTA+CGG | - | chr8_2:26552761-26552780 | Msa1242320:intron | 35.0% |
| ATGGGTGGATGTACATTTAA+GGG | - | chr8_2:26552795-26552814 | Msa1242320:intron | 35.0% | |
| TAATAGTTTAGGGACGAAAC+TGG | - | chr8_2:26552833-26552852 | Msa1242320:intron | 35.0% | |
| TAATAGTTGAGGGGTCAAAT+TGG | - | chr8_2:26552941-26552960 | Msa1242320:intron | 35.0% | |
| TGATAGAGAGCGATAGTTTA+GGG | - | chr8_2:26552964-26552983 | Msa1242320:intron | 35.0% | |
| TTATAATGAGTCAACAGCAG+GGG | - | chr8_2:26553106-26553125 | Msa1242320:CDS | 35.0% | |
| ! | ATTTTCATTTAGGCTCCAAG+CGG | + | chr8_2:26553155-26553174 | None:intergenic | 35.0% |
| AACTTTCAAGGATCTTCTTC+TGG | + | chr8_2:26553179-26553198 | None:intergenic | 35.0% | |
| !!! | AGGAGTGATAGTTTTGTGTA+TGG | - | chr8_2:26553485-26553504 | Msa1242320:intron | 35.0% |
| TATAATTGAGTCAACAGCAG+GGG | - | chr8_2:26553595-26553614 | Msa1242320:intron | 35.0% | |
| ! | CGAAGATCCTTGAAAGTTTT+TGG | - | chr8_2:26553670-26553689 | Msa1242320:intron | 35.0% |
| GAAAACTTGATTTAGCATGC+AGG | + | chr8_2:26553859-26553878 | None:intergenic | 35.0% | |
| ! | CTTGCTGTCAATAAGAAAAG+AGG | + | chr8_2:26553949-26553968 | None:intergenic | 35.0% |
| TTATATTTGAGTCACAGCAG+GGG | - | chr8_2:26554073-26554092 | Msa1242320:intron | 35.0% | |
| ! | AGTTTTCATGGATCTTCTTC+TGG | + | chr8_2:26554146-26554165 | None:intergenic | 35.0% |
| TCTAATACCAAAAGAACGGA+CGG | + | chr8_2:26554505-26554524 | None:intergenic | 35.0% | |
| !! | TTTAGTGATACCGGTTGTTT+TGG | - | chr8_2:26554630-26554649 | Msa1242320:intron | 35.0% |
| AATACCGAATCCAAAACAAC+CGG | + | chr8_2:26554643-26554662 | None:intergenic | 35.0% | |
| !!! | TTGTTTTGGATTCGGTATTC+AGG | - | chr8_2:26554644-26554663 | Msa1242320:intron | 35.0% |
| ! | TATTCAGGAGCATATTGATC+TGG | - | chr8_2:26554659-26554678 | Msa1242320:intron | 35.0% |
| ! | ATTCAGGAGCATATTGATCT+GGG | - | chr8_2:26554660-26554679 | Msa1242320:intron | 35.0% |
| TATTATGTGCCATGTGAAAC+TGG | - | chr8_2:26554743-26554762 | Msa1242320:intron | 35.0% | |
| GATCCTTCAACTGGTATTTA+TGG | - | chr8_2:26555191-26555210 | Msa1242320:intron | 35.0% | |
| !!! | AATGGACTTTTTCGTTGTTC+TGG | - | chr8_2:26555214-26555233 | Msa1242320:intron | 35.0% |
| TAACACCTTCATATTTCACC+TGG | + | chr8_2:26555334-26555353 | None:intergenic | 35.0% | |
| AGGCGATTGTTTAGTTACTT+AGG | - | chr8_2:26555369-26555388 | Msa1242320:CDS | 35.0% | |
| TGATGTGATGTGATGTGATG+CGG | + | chr8_2:26552090-26552109 | None:intergenic | 40.0% | |
| !! | AGGTTGTTGTTGTGCCATTT+GGG | + | chr8_2:26552138-26552157 | None:intergenic | 40.0% |
| ! | GTACCATTTGAGGTTGGAAA+CGG | + | chr8_2:26552166-26552185 | None:intergenic | 40.0% |
| CTCGTCCTTAATATCTCTGT+TGG | - | chr8_2:26552321-26552340 | Msa1242320:CDS | 40.0% | |
| TCCGTAGGAAACCAAATTGA+AGG | + | chr8_2:26552765-26552784 | None:intergenic | 40.0% | |
| TCCTACGGAGACTAAATTGA+TGG | - | chr8_2:26552776-26552795 | Msa1242320:intron | 40.0% | |
| CCTACGGAGACTAAATTGAT+GGG | - | chr8_2:26552777-26552796 | Msa1242320:intron | 40.0% | |
| GATGGGTGGATGTACATTTA+AGG | - | chr8_2:26552794-26552813 | Msa1242320:intron | 40.0% | |
| ! | ACTGGTGAGAGTGATAGTTT+TGG | - | chr8_2:26552851-26552870 | Msa1242320:intron | 40.0% |
| ! | CTGGTGAGAGTGATAGTTTT+GGG | - | chr8_2:26552852-26552871 | Msa1242320:intron | 40.0% |
| GTGATAGAGAGCGATAGTTT+AGG | - | chr8_2:26552963-26552982 | Msa1242320:intron | 40.0% | |
| GATAGAGAGCGATAGTTTAG+GGG | - | chr8_2:26552965-26552984 | Msa1242320:intron | 40.0% | |
| AACTTTCAAGGATCTTCGTC+TGG | + | chr8_2:26553668-26553687 | None:intergenic | 40.0% | |
| ACTCAAAACATGGGCCATTT+AGG | + | chr8_2:26553808-26553827 | None:intergenic | 40.0% | |
| ! | ATTTTCGTTTAGGCTCCAAG+CGG | + | chr8_2:26554122-26554141 | None:intergenic | 40.0% |
| !!! | GATACCGGTTGTTTTGGATT+CGG | - | chr8_2:26554636-26554655 | Msa1242320:intron | 40.0% |
| !! | CATAACAAACTTGGTGGTGA+TGG | + | chr8_2:26555138-26555157 | None:intergenic | 40.0% |
| TGGTTCCAGGTGAAATATGA+AGG | - | chr8_2:26555326-26555345 | Msa1242320:CDS | 40.0% | |
| TGTTATCCTCAACAAGTCAC+AGG | - | chr8_2:26555349-26555368 | Msa1242320:CDS | 40.0% | |
| GATTGGAAACGGAAGAAGAG+AGG | + | chr8_2:26552116-26552135 | None:intergenic | 45.0% | |
| CTTCCGTTTCCAATCCCAAA+TGG | - | chr8_2:26552121-26552140 | Msa1242320:three_prime_UTR | 45.0% | |
| !! | GTGCCATTTGGGATTGGAAA+CGG | + | chr8_2:26552127-26552146 | None:intergenic | 45.0% |
| !! | GTTGTTGTGCCATTTGGGAT+TGG | + | chr8_2:26552133-26552152 | None:intergenic | 45.0% |
| ! | GAGGTTGTTGTTGTGCCATT+TGG | + | chr8_2:26552139-26552158 | None:intergenic | 45.0% |
| CTTCCGTTTCCAACCTCAAA+TGG | - | chr8_2:26552160-26552179 | Msa1242320:three_prime_UTR | 45.0% | |
| ! | GAAAGCGTACCATTTGAGGT+TGG | + | chr8_2:26552172-26552191 | None:intergenic | 45.0% |
| AGAAACTCTCGAACACCATG+AGG | - | chr8_2:26552280-26552299 | Msa1242320:CDS | 45.0% | |
| GAAACTCTCGAACACCATGA+GGG | - | chr8_2:26552281-26552300 | Msa1242320:CDS | 45.0% | |
| GAACACCATGAGGGATATCA+AGG | - | chr8_2:26552290-26552309 | Msa1242320:CDS | 45.0% | |
| CTGAACCTTGATATCCCTCA+TGG | + | chr8_2:26552298-26552317 | None:intergenic | 45.0% | |
| ! | CTTTGGAAAACACTGGGGTT+TGG | + | chr8_2:26552482-26552501 | None:intergenic | 45.0% |
| ! | CAAACCCCAGTGTTTTCCAA+AGG | - | chr8_2:26552480-26552499 | Msa1242320:intron | 45.0% |
| CCCATCAATTTAGTCTCCGT+AGG | + | chr8_2:26552780-26552799 | None:intergenic | 45.0% | |
| ACGGAGACTAAATTGATGGG+TGG | - | chr8_2:26552780-26552799 | Msa1242320:intron | 45.0% | |
| ! | AGATACACCGTCCGTTCTTT+TGG | - | chr8_2:26554495-26554514 | Msa1242320:intron | 45.0% |
| !! | GCTTGCTATGTGACTGTTAG+AGG | - | chr8_2:26554540-26554559 | Msa1242320:intron | 45.0% |
| TGTGACTGTTAGAGGTGACA+AGG | - | chr8_2:26554548-26554567 | Msa1242320:intron | 45.0% | |
| ! | TGACAAGGCAATGCAGCTTT+TGG | - | chr8_2:26554563-26554582 | Msa1242320:intron | 45.0% |
| !! | GCTTTTGGAGAGTGGTTTGA+AGG | - | chr8_2:26554578-26554597 | Msa1242320:intron | 45.0% |
| ATCCCTAATTGAGCTGCACA+TGG | - | chr8_2:26554932-26554951 | Msa1242320:intron | 45.0% | |
| TCCCTAATTGAGCTGCACAT+GGG | - | chr8_2:26554933-26554952 | Msa1242320:intron | 45.0% | |
| TCCCATGTGCAGCTCAATTA+GGG | + | chr8_2:26554937-26554956 | None:intergenic | 45.0% | |
| CTCAGGTATGATCCTTCAAC+TGG | - | chr8_2:26555182-26555201 | Msa1242320:intron | 45.0% | |
| GATCCAACATCGCGTAACAA+AGG | - | chr8_2:26555289-26555308 | Msa1242320:CDS | 45.0% | |
| TTTCACCTGGAACCACTTCA+TGG | + | chr8_2:26555321-26555340 | None:intergenic | 45.0% | |
| TGAGGTTGGAAACGGAAGAG+AGG | + | chr8_2:26552158-26552177 | None:intergenic | 50.0% | |
| !! | CAGGTGTTGGAACAACTCAG+TGG | - | chr8_2:26552456-26552475 | Msa1242320:intron | 50.0% |
| ATGACTACTTGACTGCCGCT+TGG | - | chr8_2:26553626-26553645 | Msa1242320:intron | 50.0% | |
| !! | GCAATGCAGCTTTTGGAGAG+TGG | - | chr8_2:26554570-26554589 | Msa1242320:intron | 50.0% |
| GGAGAGTGGTTTGAAGGTGA+AGG | - | chr8_2:26554584-26554603 | Msa1242320:intron | 50.0% | |
| CTCCCATGTGCAGCTCAATT+AGG | + | chr8_2:26554938-26554957 | None:intergenic | 50.0% | |
| CGTCCTTTGTTACGCGATGT+TGG | + | chr8_2:26555295-26555314 | None:intergenic | 50.0% | |
| CAAAGGACGATGCCATGAAG+TGG | - | chr8_2:26555306-26555325 | Msa1242320:CDS | 50.0% | |
| !! | CAATCGCCTGTGACTTGTTG+AGG | + | chr8_2:26555358-26555377 | None:intergenic | 50.0% |
| TCGTCTCACCAGAGCTGCAA+AGG | - | chr8_2:26552356-26552375 | Msa1242320:CDS | 55.0% | |
| ATGACTACCTGACTGCCGCT+TGG | - | chr8_2:26553137-26553156 | Msa1242320:CDS | 55.0% | |
| !! | TTCGTTGTTCTGGAGCGTCC+CGG | - | chr8_2:26555224-26555243 | Msa1242320:intron | 55.0% |
| CGATGCCATGAAGTGGTTCC+AGG | - | chr8_2:26555313-26555332 | Msa1242320:CDS | 55.0% | |
| TTAGGCTCCAAGCGGCAGTC+AGG | + | chr8_2:26553147-26553166 | None:intergenic | 60.0% | |
| ATGACTGCCTGACTGCCGCT+TGG | - | chr8_2:26554104-26554123 | Msa1242320:intron | 60.0% | |
| TTAGGCTCCAAGCGGCAGTC+AGG | + | chr8_2:26553147-26553166 | None:intergenic | 60.0% | |
| ACGACGTCCCACACGGTAAC+CGG | + | chr8_2:26555246-26555265 | None:intergenic | 60.0% | |
| GTCGGTGCAAGGCTCGTGTT+GGG | - | chr8_2:26555267-26555286 | Msa1242320:intron | 60.0% | |
| GAGCGTCCCGGTTACCGTGT+GGG | - | chr8_2:26555236-26555255 | Msa1242320:intron | 65.0% | |
| CGACGTCCCACACGGTAACC+GGG | + | chr8_2:26555245-26555264 | None:intergenic | 65.0% | |
| ACCGTGTGGGACGTCGTCGT+CGG | - | chr8_2:26555249-26555268 | Msa1242320:intron | 65.0% | |
| ACCGACGACGACGTCCCACA+CGG | + | chr8_2:26555253-26555272 | None:intergenic | 65.0% | |
| CGTCGGTGCAAGGCTCGTGT+TGG | - | chr8_2:26555266-26555285 | Msa1242320:intron | 65.0% | |
| ! | GGAGCGTCCCGGTTACCGTG+TGG | - | chr8_2:26555235-26555254 | Msa1242320:intron | 70.0% |
| GGGACGTCGTCGTCGGTGCA+AGG | - | chr8_2:26555256-26555275 | Msa1242320:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 26552073 | 26555586 | 26552073 | ID=Msa1242320;Name=Msa1242320 |
| chr8_2 | mRNA | 26552073 | 26555586 | 26552073 | ID=Msa1242320-mRNA-1;Parent=Msa1242320;Name=Msa1242320-mRNA-1;_AED=0.06;_eAED=0.06;_QI=67|1|1|1|1|1|5|204|194 |
| chr8_2 | exon | 26552073 | 26552472 | 26552073 | ID=Msa1242320-mRNA-1:exon:9316;Parent=Msa1242320-mRNA-1 |
| chr8_2 | exon | 26552971 | 26553166 | 26552971 | ID=Msa1242320-mRNA-1:exon:9315;Parent=Msa1242320-mRNA-1 |
| chr8_2 | exon | 26555158 | 26555200 | 26555158 | ID=Msa1242320-mRNA-1:exon:9314;Parent=Msa1242320-mRNA-1 |
| chr8_2 | exon | 26555282 | 26555389 | 26555282 | ID=Msa1242320-mRNA-1:exon:9313;Parent=Msa1242320-mRNA-1 |
| chr8_2 | exon | 26555478 | 26555586 | 26555478 | ID=Msa1242320-mRNA-1:exon:9312;Parent=Msa1242320-mRNA-1 |
| chr8_2 | five_prime_UTR | 26555520 | 26555586 | 26555520 | ID=Msa1242320-mRNA-1:five_prime_utr;Parent=Msa1242320-mRNA-1 |
| chr8_2 | CDS | 26555478 | 26555519 | 26555478 | ID=Msa1242320-mRNA-1:cds;Parent=Msa1242320-mRNA-1 |
| chr8_2 | CDS | 26555282 | 26555389 | 26555282 | ID=Msa1242320-mRNA-1:cds;Parent=Msa1242320-mRNA-1 |
| chr8_2 | CDS | 26555158 | 26555200 | 26555158 | ID=Msa1242320-mRNA-1:cds;Parent=Msa1242320-mRNA-1 |
| chr8_2 | CDS | 26552971 | 26553166 | 26552971 | ID=Msa1242320-mRNA-1:cds;Parent=Msa1242320-mRNA-1 |
| chr8_2 | CDS | 26552277 | 26552472 | 26552277 | ID=Msa1242320-mRNA-1:cds;Parent=Msa1242320-mRNA-1 |
| chr8_2 | three_prime_UTR | 26552073 | 26552276 | 26552073 | ID=Msa1242320-mRNA-1:three_prime_utr;Parent=Msa1242320-mRNA-1 |
| Gene Sequence |
| Protein sequence |
