Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1188260 | XP_003628237.1 | 98.343 | 181 | 3 | 0 | 14 | 194 | 1 | 181 | 1.95e-127 | 366 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1188260 | sp|P46287|RL11_MEDSA | 98.343 | 181 | 3 | 0 | 14 | 194 | 1 | 181 | 2.66e-130 | 366 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002790 | Msa1188260 | 0.815562 | 8.677123e-52 | -8.615850e-47 |
| Msa0116670 | Msa1188260 | 0.800315 | 1.527049e-48 | -8.615850e-47 |
| Msa0173530 | Msa1188260 | 0.803845 | 2.870160e-49 | -8.615850e-47 |
| Msa0210360 | Msa1188260 | 0.837241 | 5.839218e-57 | -8.615850e-47 |
| Msa0327300 | Msa1188260 | 0.803221 | 3.865243e-49 | -8.615850e-47 |
| Msa1167540 | Msa1188260 | 0.823144 | 1.622222e-53 | -8.615850e-47 |
| Msa1188260 | Msa1242320 | 0.827929 | 1.192084e-54 | -8.615850e-47 |
| Msa1188260 | Msa1426490 | 0.841091 | 5.863712e-58 | -8.615850e-47 |
| Msa0584030 | Msa1188260 | 0.801856 | 7.390159e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1188260 | MtrunA17_Chr8g0355901 | 98.343 | 181 | 3 | 0 | 14 | 194 | 1 | 181 | 1.80e-131 | 366 |
| Msa1188260 | MtrunA17_Chr3g0078591 | 98.333 | 180 | 3 | 0 | 15 | 194 | 3 | 182 | 1.08e-130 | 364 |
| Msa1188260 | MtrunA17_Chr4g0041531 | 97.238 | 181 | 5 | 0 | 14 | 194 | 1 | 181 | 1.37e-130 | 363 |
| Msa1188260 | MtrunA17_Chr3g0078581 | 81.818 | 143 | 26 | 0 | 51 | 193 | 2 | 144 | 4.29e-84 | 245 |
| Msa1188260 | MtrunA17_Chr7g0264261 | 85.714 | 42 | 6 | 0 | 14 | 55 | 1 | 42 | 6.55e-17 | 72.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1188260 | AT2G42740.1 | 95.580 | 181 | 8 | 0 | 14 | 194 | 1 | 181 | 5.75e-128 | 357 |
| Msa1188260 | AT4G18730.1 | 95.028 | 181 | 9 | 0 | 14 | 194 | 1 | 181 | 2.67e-127 | 356 |
| Msa1188260 | AT3G58700.1 | 95.028 | 181 | 9 | 0 | 14 | 194 | 1 | 181 | 2.67e-127 | 356 |
| Msa1188260 | AT5G45775.2 | 95.028 | 181 | 9 | 0 | 14 | 194 | 1 | 181 | 2.67e-127 | 356 |
| Msa1188260 | AT5G45775.1 | 95.906 | 171 | 7 | 0 | 24 | 194 | 1 | 171 | 2.81e-121 | 340 |
Find 62 sgRNAs with CRISPR-Local
Find 206 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATCCTTCAACTGGTATTTA+TGG | 0.121344 | 8_1:-28391930 | Msa1188260:CDS |
| GCTTGCTATGTGACTGTTAG+AGG | 0.280983 | 8_1:-28392581 | Msa1188260:CDS |
| TTTAGTGATACCGGTTGTTT+TGG | 0.285925 | 8_1:-28392491 | Msa1188260:CDS |
| TAAAATTACCTTTGCGGCTC+TGG | 0.297988 | 8_1:+28394753 | None:intergenic |
| AGATACACCGTCCGTTCTTT+TGG | 0.314871 | 8_1:-28392626 | Msa1188260:CDS |
| TGACAAGGCAATGCAGCTTT+TGG | 0.318529 | 8_1:-28392558 | Msa1188260:CDS |
| ACGACGTCCCACACGGTAAC+CGG | 0.325434 | 8_1:+28391878 | None:intergenic |
| CTTTGGAAAACACTGGGGTT+TGG | 0.360701 | 8_1:+28394640 | None:intergenic |
| GAGGTTGTTGTTGTGCCATT+TGG | 0.362192 | 8_1:+28394981 | None:intergenic |
| AGGTTGTTGTTGTGCCATTT+GGG | 0.378956 | 8_1:+28394982 | None:intergenic |
| CGATGCCATGAAGTGGTTCC+AGG | 0.381480 | 8_1:-28391808 | Msa1188260:CDS |
| TTGTTGTCTCAACTATGAAT+TGG | 0.391817 | 8_1:-28391657 | Msa1188260:three_prime_UTR |
| TTTCACCTGGAACCACTTCA+TGG | 0.397811 | 8_1:+28391803 | None:intergenic |
| CTCAGGTATGATCCTTCAAC+TGG | 0.410746 | 8_1:-28391939 | Msa1188260:intron |
| CTTCCGTTTCCAACCTCAAA+TGG | 0.415309 | 8_1:-28394957 | Msa1188260:intron |
| TATTCAGGAGCATATTGATC+TGG | 0.422822 | 8_1:-28392462 | Msa1188260:CDS |
| TCATAGTTGAGACAACAAAA+AGG | 0.427589 | 8_1:+28391662 | None:intergenic |
| AGGCGATTGTTTAGTTACTT+AGG | 0.435845 | 8_1:-28391752 | Msa1188260:exon |
| AAAAGAAAGCGTACCATTTG+AGG | 0.439221 | 8_1:+28394944 | None:intergenic |
| TTCGTTGTTCTGGAGCGTCC+CGG | 0.445136 | 8_1:-28391897 | Msa1188260:CDS |
| GTTGTTGTGCCATTTGGGAT+TGG | 0.453869 | 8_1:+28394987 | None:intergenic |
| CGTCGGTGCAAGGCTCGTGT+TGG | 0.455767 | 8_1:-28391855 | Msa1188260:CDS |
| CTCGTTCTTAATATCTCTGT+TGG | 0.461901 | 8_1:-28394796 | Msa1188260:CDS |
| CTTCCGTTTCCAATCCCAAA+TGG | 0.466448 | 8_1:-28394996 | Msa1188260:exon |
| CGTCCTTTGTTACGCGATGT+TGG | 0.468785 | 8_1:+28391829 | None:intergenic |
| GTCGGTGCAAGGCTCGTGTT+GGG | 0.471084 | 8_1:-28391854 | Msa1188260:CDS |
| TTCAACTGGTATTTATGGAA+TGG | 0.482662 | 8_1:-28391925 | Msa1188260:CDS |
| AATATCTCTGTTGGTGAAAG+TGG | 0.486734 | 8_1:-28394787 | Msa1188260:CDS |
| ATTCCATAAATACCAGTTGA+AGG | 0.490800 | 8_1:+28391927 | None:intergenic |
| GGAGAGTGGTTTGAAGGTGA+AGG | 0.491764 | 8_1:-28392537 | Msa1188260:CDS |
| CTGAACCTTGATATCCCTCA+TGG | 0.500440 | 8_1:+28394822 | None:intergenic |
| AATAAACCTTTGGAAAACAC+TGG | 0.500470 | 8_1:+28394633 | None:intergenic |
| GTACCATTTGAGGTTGGAAA+CGG | 0.514068 | 8_1:+28394954 | None:intergenic |
| GGGACGTCGTCGTCGGTGCA+AGG | 0.515936 | 8_1:-28391865 | Msa1188260:CDS |
| CGACGTCCCACACGGTAACC+GGG | 0.517440 | 8_1:+28391879 | None:intergenic |
| ATAAACCTTTGGAAAACACT+GGG | 0.526168 | 8_1:+28394634 | None:intergenic |
| CAATCGCCTGTGACTTGTTG+AGG | 0.534551 | 8_1:+28391766 | None:intergenic |
| AATACCGAATCCAAAACAAC+CGG | 0.535665 | 8_1:+28392481 | None:intergenic |
| GAAAGCGTACCATTTGAGGT+TGG | 0.546416 | 8_1:+28394948 | None:intergenic |
| GAACACCATGAGGGATATCA+AGG | 0.552248 | 8_1:-28394827 | Msa1188260:CDS |
| ATTCAGGAGCATATTGATCT+GGG | 0.553824 | 8_1:-28392461 | Msa1188260:CDS |
| TGGTTCCAGGTGAAATATGA+AGG | 0.565205 | 8_1:-28391795 | Msa1188260:CDS |
| TTCTTCTAATACCAAAAGAA+CGG | 0.565907 | 8_1:+28392615 | None:intergenic |
| ACCGTGTGGGACGTCGTCGT+CGG | 0.567737 | 8_1:-28391872 | Msa1188260:CDS |
| GTGCCATTTGGGATTGGAAA+CGG | 0.570169 | 8_1:+28394993 | None:intergenic |
| GAGCGTCCCGGTTACCGTGT+GGG | 0.573313 | 8_1:-28391885 | Msa1188260:CDS |
| GATTGGAAACGGAAGAAGAG+AGG | 0.576166 | 8_1:+28395004 | None:intergenic |
| TAACACCTTCATATTTCACC+TGG | 0.578904 | 8_1:+28391790 | None:intergenic |
| TCGTCTCACCAGAGCCGCAA+AGG | 0.579619 | 8_1:-28394761 | Msa1188260:intron |
| TGTTATCCTCAACAAGTCAC+AGG | 0.598472 | 8_1:-28391772 | Msa1188260:CDS |
| GATCCAACATCGCGTAACAA+AGG | 0.602047 | 8_1:-28391832 | Msa1188260:CDS |
| GGAGCGTCCCGGTTACCGTG+TGG | 0.619085 | 8_1:-28391886 | Msa1188260:CDS |
| TGAGGTTGGAAACGGAAGAG+AGG | 0.621017 | 8_1:+28394962 | None:intergenic |
| TCTAATACCAAAAGAACGGA+CGG | 0.628670 | 8_1:+28392619 | None:intergenic |
| CAAAGGACGATGCCATGAAG+TGG | 0.630614 | 8_1:-28391815 | Msa1188260:CDS |
| AGAAACTCTCGAACACCATG+AGG | 0.653183 | 8_1:-28394837 | Msa1188260:CDS |
| ACCGACGACGACGTCCCACA+CGG | 0.654712 | 8_1:+28391871 | None:intergenic |
| TGTGACTGTTAGAGGTGACA+AGG | 0.658203 | 8_1:-28392573 | Msa1188260:CDS |
| GGTTGTGATGTGATGTGATG+CGG | 0.677610 | 8_1:+28395025 | None:intergenic |
| TAAACCTTTGGAAAACACTG+GGG | 0.679293 | 8_1:+28394635 | None:intergenic |
| GAAACTCTCGAACACCATGA+GGG | 0.686507 | 8_1:-28394836 | Msa1188260:CDS |
| CAGGTGTTGGAACAACTCAG+TGG | 0.734121 | 8_1:-28394663 | Msa1188260:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTCTTTTTTACTAAA+AGG | - | chr8_1:28392943-28392962 | Msa1188260:intron | 10.0% |
| !! | GCAAAATAATAAAAATAAAT+TGG | + | chr8_1:28393743-28393762 | None:intergenic | 10.0% |
| !! | AAAAATTAAAATTACCTTTG+CGG | + | chr8_1:28391848-28391867 | None:intergenic | 15.0% |
| !! | CAAAATTAAAAATAAACCTT+TGG | + | chr8_1:28391972-28391991 | None:intergenic | 15.0% |
| !!! | TAGATGATTTTAATAGTTTA+GGG | - | chr8_1:28392307-28392326 | Msa1188260:intron | 15.0% |
| !! | AACTATTAAAATCAAAATCA+AGG | + | chr8_1:28392413-28392432 | None:intergenic | 15.0% |
| !!! | ATTTTGATTTTAATAGTTGA+GGG | - | chr8_1:28392415-28392434 | Msa1188260:intron | 15.0% |
| !! | TATTCTTGTATATTTGAATA+AGG | - | chr8_1:28392486-28392505 | Msa1188260:CDS | 15.0% |
| !!! | TATGATTGTTTATAAGTTTT+AGG | - | chr8_1:28393473-28393492 | Msa1188260:intron | 15.0% |
| !! | TTTAATGAGAATTAATCTTA+AGG | - | chr8_1:28393515-28393534 | Msa1188260:intron | 15.0% |
| !! | TTAATGAGAATTAATCTTAA+GGG | - | chr8_1:28393516-28393535 | Msa1188260:intron | 15.0% |
| !!! | ATTTTCGTTTTTTTTCTTTT+TGG | - | chr8_1:28393938-28393957 | Msa1188260:intron | 15.0% |
| !!! | AAAAAGTTTTACATAATTCT+AGG | - | chr8_1:28394429-28394448 | Msa1188260:intron | 15.0% |
| !!! | CAAAAATAAATACTTTAAGA+CGG | + | chr8_1:28394908-28394927 | None:intergenic | 15.0% |
| !! | TAGAAAAAATCATAATGATT+CGG | - | chr8_1:28395002-28395021 | Msa1188260:five_prime_UTR | 15.0% |
| !!! | GTTCATTTTTTGTATTTATC+AGG | - | chr8_1:28391910-28391929 | Msa1188260:CDS | 20.0% |
| !! | AATCAATATCCTAAAGTTTA+GGG | - | chr8_1:28392112-28392131 | Msa1188260:intron | 20.0% |
| !! | AACTATTAAAATCACCTAAA+AGG | - | chr8_1:28392203-28392222 | Msa1188260:intron | 20.0% |
| !!! | CTAGATGATTTTAATAGTTT+AGG | - | chr8_1:28392306-28392325 | Msa1188260:intron | 20.0% |
| !! | TAAATTGACTGTTAATTCTA+GGG | - | chr8_1:28392361-28392380 | Msa1188260:intron | 20.0% |
| !!! | GATTTTGATTTTAATAGTTG+AGG | - | chr8_1:28392414-28392433 | Msa1188260:intron | 20.0% |
| !!! | TTTTGATTTTAATAGTTGAG+GGG | - | chr8_1:28392416-28392435 | Msa1188260:intron | 20.0% |
| !! | TTGAATGGCAATAAAAATTA+AGG | - | chr8_1:28392552-28392571 | Msa1188260:CDS | 20.0% |
| !! | TGAATGGCAATAAAAATTAA+GGG | - | chr8_1:28392553-28392572 | Msa1188260:CDS | 20.0% |
| !! | TGATTTGAATGAGAATAAAA+TGG | - | chr8_1:28393036-28393055 | Msa1188260:intron | 20.0% |
| !!! | TTCTTCTGGTATTTTAATTT+AGG | + | chr8_1:28393132-28393151 | None:intergenic | 20.0% |
| !! | CATTTAGAAAACAAATGTTA+AGG | + | chr8_1:28393205-28393224 | None:intergenic | 20.0% |
| !! | CTTAAATTAAAATGCCTAAA+TGG | - | chr8_1:28393269-28393288 | Msa1188260:intron | 20.0% |
| !! | ATTACTATTCTATTTGATAC+TGG | - | chr8_1:28393356-28393375 | Msa1188260:intron | 20.0% |
| !! | TTACTATTCTATTTGATACT+GGG | - | chr8_1:28393357-28393376 | Msa1188260:intron | 20.0% |
| !! | GAGGAAAAAAAAAAAAAACA+AGG | + | chr8_1:28393401-28393420 | None:intergenic | 20.0% |
| !!! | TATTATTTTGCCTTGAAAAT+TGG | - | chr8_1:28393752-28393771 | Msa1188260:intron | 20.0% |
| !!! | TTTTCATATCTATTAAATGC+TGG | - | chr8_1:28393903-28393922 | Msa1188260:intron | 20.0% |
| !! | TTTCATATCTATTAAATGCT+GGG | - | chr8_1:28393904-28393923 | Msa1188260:intron | 20.0% |
| !!! | AAAATTTGAAATTCAGTCTT+TGG | - | chr8_1:28394532-28394551 | Msa1188260:intron | 20.0% |
| !! | AACATAAATCATAACAAACT+TGG | + | chr8_1:28394618-28394637 | None:intergenic | 20.0% |
| !!! | TGCAAGTTTTGTTAATTATA+TGG | - | chr8_1:28394881-28394900 | Msa1188260:intron | 20.0% |
| !! | TTTTTGTATTTATCAGGTGT+TGG | - | chr8_1:28391916-28391935 | Msa1188260:CDS | 25.0% |
| ! | GAATCAATATCCTAAAGTTT+AGG | - | chr8_1:28392111-28392130 | Msa1188260:intron | 25.0% |
| ! | CTAAATTGACTGTTAATTCT+AGG | - | chr8_1:28392360-28392379 | Msa1188260:intron | 25.0% |
| !!! | GATCTAGTTTAAGTTTTGAA+TGG | - | chr8_1:28392537-28392556 | Msa1188260:CDS | 25.0% |
| !! | TTCTTCTGGTATTTTCATTT+AGG | + | chr8_1:28392643-28392662 | None:intergenic | 25.0% |
| ! | AAAACAACCAAAAACTTTCA+AGG | + | chr8_1:28392669-28392688 | None:intergenic | 25.0% |
| ! | GTGTAATTCATGTTTAATAG+TGG | - | chr8_1:28392760-28392779 | Msa1188260:intron | 25.0% |
| ! | ATCAATGTAGTGAAAAACAT+TGG | + | chr8_1:28392829-28392848 | None:intergenic | 25.0% |
| ! | TGAATGAGAATAAAATGGAA+AGG | - | chr8_1:28393041-28393060 | Msa1188260:intron | 25.0% |
| ! | GAATGAGAATAAAATGGAAA+GGG | - | chr8_1:28393042-28393061 | Msa1188260:intron | 25.0% |
| !!! | CTGTTGACTCAATTATAAAA+TGG | + | chr8_1:28393070-28393089 | None:intergenic | 25.0% |
| ! | AAAACAACCAAAAACTTTCA+AGG | + | chr8_1:28392669-28392688 | None:intergenic | 25.0% |
| ! | TACTATTCTATTTGATACTG+GGG | - | chr8_1:28393358-28393377 | Msa1188260:intron | 25.0% |
| ! | ACACTGTACATGAATATTAT+AGG | - | chr8_1:28393442-28393461 | Msa1188260:intron | 25.0% |
| !! | AAAACAACCAAAAGTTTTCA+TGG | + | chr8_1:28393629-28393648 | None:intergenic | 25.0% |
| !!! | TTTTCAAGTCACAATAATCT+GGG | - | chr8_1:28393645-28393664 | Msa1188260:intron | 25.0% |
| ! | AAAAACGAAAATCAGTTAAC+TGG | + | chr8_1:28393930-28393949 | None:intergenic | 25.0% |
| ! | TTCTTCTAATACCAAAAGAA+CGG | + | chr8_1:28393980-28393999 | None:intergenic | 25.0% |
| !!! | AGAAGAAATTTTAGTGATAC+CGG | - | chr8_1:28394092-28394111 | Msa1188260:intron | 25.0% |
| !! | TTGTTTAAAACAGTTTCACA+TGG | + | chr8_1:28394265-28394284 | None:intergenic | 25.0% |
| ! | ATAAATCATAACAAACTTGG+TGG | + | chr8_1:28394615-28394634 | None:intergenic | 25.0% |
| !! | TTTAACATTGTTTCTTTCTC+AGG | - | chr8_1:28394636-28394655 | Msa1188260:intron | 25.0% |
| GGAATGAAAATCAGAAAGAA+TGG | + | chr8_1:28391674-28391693 | None:intergenic | 30.0% | |
| ! | CGAAAAATGCATTTTCTTAC+AGG | - | chr8_1:28391723-28391742 | Msa1188260:three_prime_UTR | 30.0% |
| ! | ATGCATTTTCTTACAGGTTT+CGG | - | chr8_1:28391729-28391748 | Msa1188260:three_prime_UTR | 30.0% |
| ! | ATAAACCTTTGGAAAACACT+GGG | + | chr8_1:28391961-28391980 | None:intergenic | 30.0% |
| ! | AATAAACCTTTGGAAAACAC+TGG | + | chr8_1:28391962-28391981 | None:intergenic | 30.0% |
| !!! | CGTAATTGATAGTGTTTTTG+TGG | - | chr8_1:28392066-28392085 | Msa1188260:intron | 30.0% |
| !! | GATAGTGTTTTTGTGGTTAA+TGG | - | chr8_1:28392073-28392092 | Msa1188260:intron | 30.0% |
| ! | TTGTGGTTAATGGAGTTTTA+AGG | - | chr8_1:28392083-28392102 | Msa1188260:intron | 30.0% |
| TACAATCAACCCTAAACTTT+AGG | + | chr8_1:28392124-28392143 | None:intergenic | 30.0% | |
| ! | GTACATTTTATGGACCTTTT+AGG | + | chr8_1:28392220-28392239 | None:intergenic | 30.0% |
| !! | AGGATGAGAAGTACATTTTA+TGG | + | chr8_1:28392230-28392249 | None:intergenic | 30.0% |
| TAATAGTTTAGGGACTAAAC+TGG | - | chr8_1:28392317-28392336 | Msa1188260:intron | 30.0% | |
| TATTATAATGAGTCAACAGC+AGG | - | chr8_1:28392582-28392601 | Msa1188260:CDS | 30.0% | |
| ATTATAATGAGTCAACAGCA+GGG | - | chr8_1:28392583-28392602 | Msa1188260:CDS | 30.0% | |
| ! | AGAAGATCCTTGAAAGTTTT+TGG | - | chr8_1:28392659-28392678 | Msa1188260:intron | 30.0% |
| !! | GTTTTCAAGACACAATTATC+TGG | - | chr8_1:28392684-28392703 | Msa1188260:intron | 30.0% |
| !!! | AGTATTTTTTTGCTGCACAA+AGG | - | chr8_1:28392875-28392894 | Msa1188260:intron | 30.0% |
| !!! | TGATAGTTTTGTGTATGGAT+AGG | - | chr8_1:28392968-28392987 | Msa1188260:intron | 30.0% |
| TTTATAATTGAGTCAACAGC+AGG | - | chr8_1:28393071-28393090 | Msa1188260:intron | 30.0% | |
| TTATAATTGAGTCAACAGCA+GGG | - | chr8_1:28393072-28393091 | Msa1188260:intron | 30.0% | |
| !!! | ATTTTAATTTAGGCTCCAAG+CGG | + | chr8_1:28393122-28393141 | None:intergenic | 30.0% |
| ! | AGAAGATCCTTGAAAGTTTT+TGG | - | chr8_1:28392659-28392678 | Msa1188260:intron | 30.0% |
| !! | GTTTTCAAGACACAATTATC+TGG | - | chr8_1:28392684-28392703 | Msa1188260:intron | 30.0% |
| AAAACTTGATTTAGCATGCA+GGG | + | chr8_1:28393327-28393346 | None:intergenic | 30.0% | |
| ACTATTCTATTTGATACTGG+GGG | - | chr8_1:28393359-28393378 | Msa1188260:intron | 30.0% | |
| TATTATATTTGAGTCACAGC+AGG | - | chr8_1:28393542-28393561 | Msa1188260:intron | 30.0% | |
| ATTATATTTGAGTCACAGCA+GGG | - | chr8_1:28393543-28393562 | Msa1188260:intron | 30.0% | |
| ! | TTCTTCTGGTATTTTCGTTT+AGG | + | chr8_1:28393603-28393622 | None:intergenic | 30.0% |
| ! | AGAAGATCCATGAAAACTTT+TGG | - | chr8_1:28393619-28393638 | Msa1188260:intron | 30.0% |
| !!! | GTTTTCAAGTCACAATAATC+TGG | - | chr8_1:28393644-28393663 | Msa1188260:intron | 30.0% |
| ! | TTTCAAGTCACAATAATCTG+GGG | - | chr8_1:28393646-28393665 | Msa1188260:intron | 30.0% |
| ! | ATATCGTCAACCAATTTTCA+AGG | + | chr8_1:28393765-28393784 | None:intergenic | 30.0% |
| TTGAAAATTGGTTGACGATA+TGG | - | chr8_1:28393764-28393783 | Msa1188260:intron | 30.0% | |
| AGATATGAAAACTTGACGAT+CGG | + | chr8_1:28393894-28393913 | None:intergenic | 30.0% | |
| TTGTTTATACCAGTTTCACA+TGG | + | chr8_1:28394226-28394245 | None:intergenic | 30.0% | |
| TAATGATTCAGTTCTTCAAG+AGG | - | chr8_1:28394325-28394344 | Msa1188260:intron | 30.0% | |
| AGTTCTTCAAGAGGAAATTA+TGG | - | chr8_1:28394334-28394353 | Msa1188260:intron | 30.0% | |
| AAATTATGGCTAAAGCTATC+AGG | - | chr8_1:28394348-28394367 | Msa1188260:intron | 30.0% | |
| TTGTTTATCACAATGCATGT+TGG | - | chr8_1:28394456-28394475 | Msa1188260:intron | 30.0% | |
| ACGTAAAAATCGGATTAACT+CGG | + | chr8_1:28394494-28394513 | None:intergenic | 30.0% | |
| GCTTAAAGAGACGTAAAAAT+CGG | + | chr8_1:28394504-28394523 | None:intergenic | 30.0% | |
| GCTTAAAGACTGAAATGATA+AGG | + | chr8_1:28394561-28394580 | None:intergenic | 30.0% | |
| GATGGAATATCATCAGAAAT+CGG | + | chr8_1:28394591-28394610 | None:intergenic | 30.0% | |
| ATTCCATAAATACCAGTTGA+AGG | + | chr8_1:28394668-28394687 | None:intergenic | 30.0% | |
| TTCAACTGGTATTTATGGAA+TGG | - | chr8_1:28394667-28394686 | Msa1188260:intron | 30.0% | |
| TCATAGTTGAGACAACAAAA+AGG | + | chr8_1:28394933-28394952 | None:intergenic | 30.0% | |
| TTGTTGTCTCAACTATGAAT+TGG | - | chr8_1:28394935-28394954 | Msa1188260:intron | 30.0% | |
| ! | AAAAGAAAGCGTACCATTTG+AGG | + | chr8_1:28391651-28391670 | None:intergenic | 35.0% |
| GACAACAACAACAACAACAA+AGG | + | chr8_1:28391695-28391714 | None:intergenic | 35.0% | |
| CTCGTTCTTAATATCTCTGT+TGG | - | chr8_1:28391796-28391815 | Msa1188260:CDS | 35.0% | |
| ! | AATATCTCTGTTGGTGAAAG+TGG | - | chr8_1:28391805-28391824 | Msa1188260:CDS | 35.0% |
| ! | TAAACCTTTGGAAAACACTG+GGG | + | chr8_1:28391960-28391979 | None:intergenic | 35.0% |
| GTACTTCTCATCCTTCAATT+TGG | - | chr8_1:28392236-28392255 | Msa1188260:intron | 35.0% | |
| ! | TCCTTCAATTTGGTTTCCTA+CGG | - | chr8_1:28392246-28392265 | Msa1188260:intron | 35.0% |
| !! | TGATGGGTGGATTACATTTA+AGG | - | chr8_1:28392278-28392297 | Msa1188260:intron | 35.0% |
| !! | GATGGGTGGATTACATTTAA+GGG | - | chr8_1:28392279-28392298 | Msa1188260:intron | 35.0% |
| TAATAGTTGAGGGGTCAAAT+TGG | - | chr8_1:28392425-28392444 | Msa1188260:intron | 35.0% | |
| TGATAGAGAGCGATAGTTTA+GGG | - | chr8_1:28392448-28392467 | Msa1188260:intron | 35.0% | |
| TTATAATGAGTCAACAGCAG+GGG | - | chr8_1:28392584-28392603 | Msa1188260:CDS | 35.0% | |
| ! | ATTTTCATTTAGGCTCCAAG+CGG | + | chr8_1:28392633-28392652 | None:intergenic | 35.0% |
| AACTTTCAAGGATCTTCTTC+TGG | + | chr8_1:28392657-28392676 | None:intergenic | 35.0% | |
| !!! | AGGAGTGATAGTTTTGTGTA+TGG | - | chr8_1:28392963-28392982 | Msa1188260:intron | 35.0% |
| TATAATTGAGTCAACAGCAG+GGG | - | chr8_1:28393073-28393092 | Msa1188260:intron | 35.0% | |
| AACTTTCAAGGATCTTCTTC+TGG | + | chr8_1:28392657-28392676 | None:intergenic | 35.0% | |
| ACAGTTTCAACTCACCATTT+AGG | + | chr8_1:28393286-28393305 | None:intergenic | 35.0% | |
| GAAAACTTGATTTAGCATGC+AGG | + | chr8_1:28393328-28393347 | None:intergenic | 35.0% | |
| ! | CTTGCTGTCAATAAGAAAAG+AGG | + | chr8_1:28393420-28393439 | None:intergenic | 35.0% |
| TTATATTTGAGTCACAGCAG+GGG | - | chr8_1:28393544-28393563 | Msa1188260:intron | 35.0% | |
| ! | AGTTTTCATGGATCTTCTTC+TGG | + | chr8_1:28393617-28393636 | None:intergenic | 35.0% |
| TCTAATACCAAAAGAACGGA+CGG | + | chr8_1:28393976-28393995 | None:intergenic | 35.0% | |
| !! | TTTAGTGATACCGGTTGTTT+TGG | - | chr8_1:28394101-28394120 | Msa1188260:intron | 35.0% |
| AATACCGAATCCAAAACAAC+CGG | + | chr8_1:28394114-28394133 | None:intergenic | 35.0% | |
| !!! | TTGTTTTGGATTCGGTATTC+AGG | - | chr8_1:28394115-28394134 | Msa1188260:intron | 35.0% |
| ! | TATTCAGGAGCATATTGATC+TGG | - | chr8_1:28394130-28394149 | Msa1188260:intron | 35.0% |
| ! | ATTCAGGAGCATATTGATCT+GGG | - | chr8_1:28394131-28394150 | Msa1188260:intron | 35.0% |
| TATTATGTGCCATGTGAAAC+TGG | - | chr8_1:28394214-28394233 | Msa1188260:intron | 35.0% | |
| GATCCTTCAACTGGTATTTA+TGG | - | chr8_1:28394662-28394681 | Msa1188260:CDS | 35.0% | |
| !!! | AATGGACTTTTTCGTTGTTC+TGG | - | chr8_1:28394685-28394704 | Msa1188260:intron | 35.0% |
| TAACACCTTCATATTTCACC+TGG | + | chr8_1:28394805-28394824 | None:intergenic | 35.0% | |
| AGGCGATTGTTTAGTTACTT+AGG | - | chr8_1:28394840-28394859 | Msa1188260:CDS | 35.0% | |
| !! | AGGTTGTTGTTGTGCCATTT+GGG | + | chr8_1:28391613-28391632 | None:intergenic | 40.0% |
| ! | GTACCATTTGAGGTTGGAAA+CGG | + | chr8_1:28391641-28391660 | None:intergenic | 40.0% |
| TAAAATTACCTTTGCGGCTC+TGG | + | chr8_1:28391842-28391861 | None:intergenic | 40.0% | |
| TCCGTAGGAAACCAAATTGA+AGG | + | chr8_1:28392250-28392269 | None:intergenic | 40.0% | |
| TCCTACGGAGACTAAATTGA+TGG | - | chr8_1:28392261-28392280 | Msa1188260:intron | 40.0% | |
| CCTACGGAGACTAAATTGAT+GGG | - | chr8_1:28392262-28392281 | Msa1188260:intron | 40.0% | |
| ACTGGTGAGAGTGATAGTTT+AGG | - | chr8_1:28392335-28392354 | Msa1188260:intron | 40.0% | |
| CTGGTGAGAGTGATAGTTTA+GGG | - | chr8_1:28392336-28392355 | Msa1188260:intron | 40.0% | |
| GTGATAGAGAGCGATAGTTT+AGG | - | chr8_1:28392447-28392466 | Msa1188260:intron | 40.0% | |
| GATAGAGAGCGATAGTTTAG+GGG | - | chr8_1:28392449-28392468 | Msa1188260:intron | 40.0% | |
| ! | ATTTTCGTTTAGGCTCCAAG+CGG | + | chr8_1:28393593-28393612 | None:intergenic | 40.0% |
| !!! | GATACCGGTTGTTTTGGATT+CGG | - | chr8_1:28394107-28394126 | Msa1188260:intron | 40.0% |
| !! | CATAACAAACTTGGTGGTGA+TGG | + | chr8_1:28394609-28394628 | None:intergenic | 40.0% |
| TGGTTCCAGGTGAAATATGA+AGG | - | chr8_1:28394797-28394816 | Msa1188260:CDS | 40.0% | |
| TGTTATCCTCAACAAGTCAC+AGG | - | chr8_1:28394820-28394839 | Msa1188260:CDS | 40.0% | |
| GGTTGTGATGTGATGTGATG+CGG | + | chr8_1:28391570-28391589 | None:intergenic | 45.0% | |
| GATTGGAAACGGAAGAAGAG+AGG | + | chr8_1:28391591-28391610 | None:intergenic | 45.0% | |
| CTTCCGTTTCCAATCCCAAA+TGG | - | chr8_1:28391596-28391615 | Msa1188260:three_prime_UTR | 45.0% | |
| !! | GTGCCATTTGGGATTGGAAA+CGG | + | chr8_1:28391602-28391621 | None:intergenic | 45.0% |
| !! | GTTGTTGTGCCATTTGGGAT+TGG | + | chr8_1:28391608-28391627 | None:intergenic | 45.0% |
| ! | GAGGTTGTTGTTGTGCCATT+TGG | + | chr8_1:28391614-28391633 | None:intergenic | 45.0% |
| CTTCCGTTTCCAACCTCAAA+TGG | - | chr8_1:28391635-28391654 | Msa1188260:three_prime_UTR | 45.0% | |
| ! | GAAAGCGTACCATTTGAGGT+TGG | + | chr8_1:28391647-28391666 | None:intergenic | 45.0% |
| AGAAACTCTCGAACACCATG+AGG | - | chr8_1:28391755-28391774 | Msa1188260:exon | 45.0% | |
| GAAACTCTCGAACACCATGA+GGG | - | chr8_1:28391756-28391775 | Msa1188260:exon | 45.0% | |
| GAACACCATGAGGGATATCA+AGG | - | chr8_1:28391765-28391784 | Msa1188260:CDS | 45.0% | |
| CTGAACCTTGATATCCCTCA+TGG | + | chr8_1:28391773-28391792 | None:intergenic | 45.0% | |
| ! | CTTTGGAAAACACTGGGGTT+TGG | + | chr8_1:28391955-28391974 | None:intergenic | 45.0% |
| ! | CAAACCCCAGTGTTTTCCAA+AGG | - | chr8_1:28391953-28391972 | Msa1188260:intron | 45.0% |
| CCCATCAATTTAGTCTCCGT+AGG | + | chr8_1:28392265-28392284 | None:intergenic | 45.0% | |
| ACGGAGACTAAATTGATGGG+TGG | - | chr8_1:28392265-28392284 | Msa1188260:intron | 45.0% | |
| ! | AGATACACCGTCCGTTCTTT+TGG | - | chr8_1:28393966-28393985 | Msa1188260:intron | 45.0% |
| !! | GCTTGCTATGTGACTGTTAG+AGG | - | chr8_1:28394011-28394030 | Msa1188260:intron | 45.0% |
| TGTGACTGTTAGAGGTGACA+AGG | - | chr8_1:28394019-28394038 | Msa1188260:intron | 45.0% | |
| ! | TGACAAGGCAATGCAGCTTT+TGG | - | chr8_1:28394034-28394053 | Msa1188260:intron | 45.0% |
| !! | GCTTTTGGAGAGTGGTTTGA+AGG | - | chr8_1:28394049-28394068 | Msa1188260:intron | 45.0% |
| ATCCCTAATTGAGCTGCACA+TGG | - | chr8_1:28394403-28394422 | Msa1188260:intron | 45.0% | |
| TCCCTAATTGAGCTGCACAT+GGG | - | chr8_1:28394404-28394423 | Msa1188260:intron | 45.0% | |
| TCCCATGTGCAGCTCAATTA+GGG | + | chr8_1:28394408-28394427 | None:intergenic | 45.0% | |
| CTCAGGTATGATCCTTCAAC+TGG | - | chr8_1:28394653-28394672 | Msa1188260:CDS | 45.0% | |
| GATCCAACATCGCGTAACAA+AGG | - | chr8_1:28394760-28394779 | Msa1188260:intron | 45.0% | |
| TTTCACCTGGAACCACTTCA+TGG | + | chr8_1:28394792-28394811 | None:intergenic | 45.0% | |
| TGAGGTTGGAAACGGAAGAG+AGG | + | chr8_1:28391633-28391652 | None:intergenic | 50.0% | |
| !! | CAGGTGTTGGAACAACTCAG+TGG | - | chr8_1:28391929-28391948 | Msa1188260:CDS | 50.0% |
| ATGACTACTTGACTGCCGCT+TGG | - | chr8_1:28393104-28393123 | Msa1188260:intron | 50.0% | |
| !! | GCAATGCAGCTTTTGGAGAG+TGG | - | chr8_1:28394041-28394060 | Msa1188260:intron | 50.0% |
| GGAGAGTGGTTTGAAGGTGA+AGG | - | chr8_1:28394055-28394074 | Msa1188260:intron | 50.0% | |
| CTCCCATGTGCAGCTCAATT+AGG | + | chr8_1:28394409-28394428 | None:intergenic | 50.0% | |
| CGTCCTTTGTTACGCGATGT+TGG | + | chr8_1:28394766-28394785 | None:intergenic | 50.0% | |
| CAAAGGACGATGCCATGAAG+TGG | - | chr8_1:28394777-28394796 | Msa1188260:CDS | 50.0% | |
| !! | CAATCGCCTGTGACTTGTTG+AGG | + | chr8_1:28394829-28394848 | None:intergenic | 50.0% |
| ATGACTACCTGACTGCCGCT+TGG | - | chr8_1:28392615-28392634 | Msa1188260:CDS | 55.0% | |
| !! | TTCGTTGTTCTGGAGCGTCC+CGG | - | chr8_1:28394695-28394714 | Msa1188260:intron | 55.0% |
| CGATGCCATGAAGTGGTTCC+AGG | - | chr8_1:28394784-28394803 | Msa1188260:CDS | 55.0% | |
| TCGTCTCACCAGAGCCGCAA+AGG | - | chr8_1:28391831-28391850 | Msa1188260:CDS | 60.0% | |
| TTAGGCTCCAAGCGGCAGTC+AGG | + | chr8_1:28392625-28392644 | None:intergenic | 60.0% | |
| ATGACTGCCTGACTGCCGCT+TGG | - | chr8_1:28393575-28393594 | Msa1188260:intron | 60.0% | |
| TTAGGCTCCAAGCGGCAGTC+AGG | + | chr8_1:28392625-28392644 | None:intergenic | 60.0% | |
| ACGACGTCCCACACGGTAAC+CGG | + | chr8_1:28394717-28394736 | None:intergenic | 60.0% | |
| GTCGGTGCAAGGCTCGTGTT+GGG | - | chr8_1:28394738-28394757 | Msa1188260:intron | 60.0% | |
| GAGCGTCCCGGTTACCGTGT+GGG | - | chr8_1:28394707-28394726 | Msa1188260:intron | 65.0% | |
| CGACGTCCCACACGGTAACC+GGG | + | chr8_1:28394716-28394735 | None:intergenic | 65.0% | |
| ACCGTGTGGGACGTCGTCGT+CGG | - | chr8_1:28394720-28394739 | Msa1188260:intron | 65.0% | |
| ACCGACGACGACGTCCCACA+CGG | + | chr8_1:28394724-28394743 | None:intergenic | 65.0% | |
| CGTCGGTGCAAGGCTCGTGT+TGG | - | chr8_1:28394737-28394756 | Msa1188260:intron | 65.0% | |
| ! | GGAGCGTCCCGGTTACCGTG+TGG | - | chr8_1:28394706-28394725 | Msa1188260:intron | 70.0% |
| GGGACGTCGTCGTCGGTGCA+AGG | - | chr8_1:28394727-28394746 | Msa1188260:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 28391557 | 28395057 | 28391557 | ID=Msa1188260;Name=Msa1188260 |
| chr8_1 | mRNA | 28391557 | 28395057 | 28391557 | ID=Msa1188260-mRNA-1;Parent=Msa1188260;Name=Msa1188260-mRNA-1;_AED=0.03;_eAED=0.03;_QI=58|1|1|1|1|1|5|204|194 |
| chr8_1 | exon | 28391557 | 28391956 | 28391557 | ID=Msa1188260-mRNA-1:exon:10019;Parent=Msa1188260-mRNA-1 |
| chr8_1 | exon | 28392455 | 28392650 | 28392455 | ID=Msa1188260-mRNA-1:exon:10018;Parent=Msa1188260-mRNA-1 |
| chr8_1 | exon | 28394640 | 28394682 | 28394640 | ID=Msa1188260-mRNA-1:exon:10017;Parent=Msa1188260-mRNA-1 |
| chr8_1 | exon | 28394762 | 28394869 | 28394762 | ID=Msa1188260-mRNA-1:exon:10016;Parent=Msa1188260-mRNA-1 |
| chr8_1 | exon | 28394958 | 28395057 | 28394958 | ID=Msa1188260-mRNA-1:exon:10015;Parent=Msa1188260-mRNA-1 |
| chr8_1 | five_prime_UTR | 28395000 | 28395057 | 28395000 | ID=Msa1188260-mRNA-1:five_prime_utr;Parent=Msa1188260-mRNA-1 |
| chr8_1 | CDS | 28394958 | 28394999 | 28394958 | ID=Msa1188260-mRNA-1:cds;Parent=Msa1188260-mRNA-1 |
| chr8_1 | CDS | 28394762 | 28394869 | 28394762 | ID=Msa1188260-mRNA-1:cds;Parent=Msa1188260-mRNA-1 |
| chr8_1 | CDS | 28394640 | 28394682 | 28394640 | ID=Msa1188260-mRNA-1:cds;Parent=Msa1188260-mRNA-1 |
| chr8_1 | CDS | 28392455 | 28392650 | 28392455 | ID=Msa1188260-mRNA-1:cds;Parent=Msa1188260-mRNA-1 |
| chr8_1 | CDS | 28391761 | 28391956 | 28391761 | ID=Msa1188260-mRNA-1:cds;Parent=Msa1188260-mRNA-1 |
| chr8_1 | three_prime_UTR | 28391557 | 28391760 | 28391557 | ID=Msa1188260-mRNA-1:three_prime_utr;Parent=Msa1188260-mRNA-1 |
| Gene Sequence |
| Protein sequence |
