AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1245790

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1245790 MtrunA17_Chr8g0347121 97.452 314 8 0 9 322 35 348 0.0 642
Msa1245790 MtrunA17_Chr8g0347091 94.715 246 13 0 324 569 48 293 3.13e-174 494
Msa1245790 MtrunA17_Chr7g0275581 66.246 317 103 2 8 322 55 369 2.33e-147 441
Msa1245790 MtrunA17_Chr3g0126541 60.135 296 109 4 29 322 76 364 2.81e-114 355
Msa1245790 MtrunA17_Chr1g0158861 58.446 296 114 4 29 322 78 366 8.16e-112 349
Msa1245790 MtrunA17_Chr4g0073941 44.932 296 156 4 30 322 95 386 1.83e-79 265
Msa1245790 MtrunA17_Chr2g0326871 43.564 303 162 4 22 322 65 360 1.16e-78 261
Msa1245790 MtrunA17_Chr2g0305771 40.979 327 176 7 7 322 14 334 4.22e-76 254
Msa1245790 MtrunA17_Chr4g0028861 40.810 321 171 7 9 322 99 407 9.35e-76 253
Msa1245790 MtrunA17_Chr7g0228181 40.432 324 171 7 12 322 20 334 7.00e-74 248
Msa1245790 MtrunA17_Chr3g0139071 40.066 302 158 5 34 322 73 364 1.82e-69 238
Msa1245790 MtrunA17_Chr1g0181121 40.895 313 170 6 18 322 22 327 5.88e-69 235
Msa1245790 MtrunA17_Chr4g0001481 41.358 324 178 5 5 322 74 391 1.21e-67 233
Msa1245790 MtrunA17_Chr3g0125651 39.465 299 163 5 34 322 36 326 2.09e-64 223
Msa1245790 MtrunA17_Chr6g0481021 34.343 297 183 6 33 322 122 413 2.38e-51 187
Msa1245790 MtrunA17_Chr6g0480671 32.890 301 175 7 34 322 193 478 8.59e-49 181
Msa1245790 MtrunA17_Chr6g0480851 32.313 294 186 6 33 322 183 467 9.56e-48 177
Msa1245790 MtrunA17_Chr6g0480781 32.323 297 180 8 34 322 169 452 2.00e-41 159
Msa1245790 MtrunA17_Chr2g0326861 41.837 196 108 2 109 302 14 205 1.28e-40 147
Msa1245790 MtrunA17_Chr5g0395411 35.648 216 121 5 33 244 171 372 3.44e-38 144
Msa1245790 MtrunA17_Chr6g0480741 30.872 298 180 7 34 322 115 395 3.51e-37 146
Msa1245790 MtrunA17_Chr6g0480681 27.077 325 185 9 34 322 115 423 2.11e-30 126
Msa1245790 MtrunA17_Chr8g0360821 30.032 313 179 11 33 322 61 356 2.70e-30 125
Msa1245790 MtrunA17_Chr7g0218341 28.739 341 205 13 18 332 91 419 3.18e-24 107
Msa1245790 MtrunA17_Chr6g0480791 35.484 124 79 1 34 156 172 295 2.08e-21 94.7
Msa1245790 MtrunA17_Chr6g0480751 35.878 131 79 1 26 151 85 215 2.21e-21 93.2
Msa1245790 MtrunA17_Chr2g0318551 32.353 136 78 3 27 153 48 178 3.39e-15 75.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1245790 AT4G01010.1 58.413 315 115 4 9 322 55 354 1.32e-116 361
Msa1245790 AT4G01010.2 58.413 315 115 4 9 322 55 354 1.32e-116 361
Msa1245790 AT5G53130.1 60.678 295 108 4 29 322 79 366 8.74e-116 360
Msa1245790 AT1G01340.1 57.006 314 130 3 9 322 40 348 1.33e-115 359
Msa1245790 AT1G01340.2 57.006 314 130 3 9 322 45 353 1.50e-115 359
Msa1245790 AT3G61730.1 61.382 246 95 0 324 569 88 333 1.62e-111 337
Msa1245790 AT5G36000.1 57.724 246 104 0 324 569 84 329 4.93e-105 320
Msa1245790 AT2G46430.1 54.671 289 128 2 34 322 72 357 1.23e-99 317
Msa1245790 AT2G46430.2 54.671 289 128 2 34 322 72 357 1.23e-99 317
Msa1245790 AT2G23980.6 43.631 314 166 4 15 322 59 367 3.41e-84 277
Msa1245790 AT2G23980.9 43.631 314 166 4 15 322 86 394 7.10e-84 277
Msa1245790 AT2G23980.10 43.631 314 166 4 15 322 86 394 7.10e-84 277
Msa1245790 AT2G23980.1 43.631 314 166 4 15 322 86 394 7.10e-84 277
Msa1245790 AT2G23980.4 43.631 314 166 4 15 322 86 394 7.10e-84 277
Msa1245790 AT2G23980.5 43.631 314 166 4 15 322 86 394 7.10e-84 277
Msa1245790 AT5G57940.3 46.309 298 152 3 30 322 77 371 9.00e-82 270
Msa1245790 AT5G57940.1 46.309 298 152 3 30 322 84 378 1.09e-81 270
Msa1245790 AT5G57940.2 46.309 298 152 3 30 322 84 378 1.09e-81 270
Msa1245790 AT2G23980.3 40.950 337 165 5 15 322 86 417 4.86e-79 265
Msa1245790 AT2G23980.2 40.950 337 165 5 15 322 86 417 4.86e-79 265
Msa1245790 AT2G23980.8 40.950 337 165 5 15 322 86 417 4.86e-79 265
Msa1245790 AT2G23980.7 40.950 337 165 5 15 322 86 417 4.86e-79 265
Msa1245790 AT4G30560.5 44.333 300 155 5 30 322 73 367 6.84e-79 263
Msa1245790 AT4G30560.2 44.333 300 155 5 30 322 73 367 6.84e-79 263
Msa1245790 AT4G30560.3 44.333 300 155 5 30 322 73 367 6.84e-79 263
Msa1245790 AT4G30560.1 44.333 300 155 5 30 322 99 393 8.66e-79 263
Msa1245790 AT4G30560.4 44.333 300 155 5 30 322 99 393 8.66e-79 263
Msa1245790 AT1G19780.1 43.046 302 157 4 30 322 93 388 1.52e-76 258
Msa1245790 AT1G15990.1 43.522 301 150 6 34 322 90 382 1.99e-76 257
Msa1245790 AT2G28260.1 41.718 326 171 7 3 322 39 351 4.95e-75 252
Msa1245790 AT2G28260.2 41.975 324 169 7 5 322 1 311 7.87e-75 250
Msa1245790 AT2G46450.4 45.775 284 146 4 42 322 37 315 1.44e-74 250
Msa1245790 AT2G46450.1 45.775 284 146 4 42 322 37 315 1.44e-74 250
Msa1245790 AT2G46440.1 40.938 320 181 4 6 322 1 315 8.27e-72 242
Msa1245790 AT2G24610.1 39.521 334 168 7 13 322 38 361 3.04e-67 232
Msa1245790 AT2G24610.2 39.521 334 168 7 13 322 53 376 5.14e-67 231
Msa1245790 AT5G14870.1 40.404 297 168 4 31 322 37 329 1.19e-66 230
Msa1245790 AT3G48010.1 39.145 304 166 6 31 322 41 337 2.95e-66 229
Msa1245790 AT4G30360.1 40.000 305 155 7 33 322 70 361 6.78e-65 225
Msa1245790 AT2G46450.3 42.254 284 133 5 42 322 24 279 7.64e-63 218
Msa1245790 AT2G46450.2 42.254 284 133 5 42 322 37 292 9.13e-63 218
Msa1245790 AT3G17700.2 30.241 291 195 4 33 322 191 474 1.60e-42 162
Msa1245790 AT3G17700.1 30.345 290 194 4 34 322 192 474 2.32e-42 162
Msa1245790 AT3G62500.1 49.390 164 62 3 405 568 178 320 2.90e-40 150
Msa1245790 AT3G17690.3 29.530 298 195 6 31 322 153 441 3.38e-40 153
Msa1245790 AT3G62500.2 49.390 164 62 3 405 568 178 320 4.56e-40 150
Msa1245790 AT3G17690.2 29.530 298 195 6 31 322 153 441 4.97e-40 155
Msa1245790 AT3G17690.1 29.530 298 195 6 31 322 153 441 6.75e-40 155
Msa1245790 AT2G46440.2 47.482 139 68 3 187 322 1 137 5.51e-29 120
Msa1245790 AT5G15410.1 29.429 350 216 13 5 332 87 427 8.09e-29 122
Msa1245790 AT5G15410.2 29.429 350 216 13 5 332 86 426 9.00e-29 122
Msa1245790 AT5G54250.3 30.000 230 154 3 34 256 79 308 8.07e-27 115
Msa1245790 AT5G54250.2 30.000 230 154 3 34 256 79 308 1.05e-26 115
Msa1245790 AT5G54250.1 30.000 230 154 3 34 256 79 308 1.05e-26 115
Msa1245790 AT5G54250.4 30.000 230 154 3 34 256 79 308 1.05e-26 115
Msa1245790 AT1G19780.2 36.813 182 100 4 150 322 2 177 6.75e-26 112

Find 125 sgRNAs with CRISPR-Local

Find 300 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GACTCACGGTTGTTGCTTTC+TGG 0.121172 8_2:+36004874 Msa1245790:CDS
AACCAATCCTTTGTTATATA+TGG 0.163608 8_2:-36002076 None:intergenic
AAAGATCCTGATGATATTAT+TGG 0.173184 8_2:+36002525 Msa1245790:CDS
GACTGAAATTGCGAAGTTTC+TGG 0.175285 8_2:+36003963 Msa1245790:CDS
CCTGTTGACTCATGATTTAT+AGG 0.181831 8_2:-36000710 None:intergenic
TTGTTAAGAAAGAGTGTTTA+AGG 0.183623 8_2:-36000143 None:intergenic
GGTGGGGTTTGCGCAATTTA+AGG 0.199611 8_2:+36002646 Msa1245790:CDS
TCAATGTTCCATTCAAATTA+AGG 0.206765 8_2:-36001475 None:intergenic
CTCTGTGAAGACTACGAAAA+TGG 0.226003 8_2:+36005270 Msa1245790:CDS
CGATCATGGATGATGCTATT+TGG 0.236034 8_2:+36004037 Msa1245790:CDS
ATAAATTCTTCTACTGCTTT+TGG 0.244483 8_2:+36002625 Msa1245790:CDS
ATTAGGTTGTTGGAGCATTT+TGG 0.256130 8_2:+36002358 Msa1245790:intron
AAGCTCTACACTTCAGCTTT+TGG 0.288606 8_2:+36004123 Msa1245790:CDS
CAATATGATTCTTCAATTGA+TGG 0.309646 8_2:+36001247 Msa1245790:exon
TTCTGTCCAGATTTGAAGAT+TGG 0.337475 8_2:+36001194 Msa1245790:intron
GGAACTGAGCCTTGTGGAAT+TGG 0.348268 8_2:-36002055 None:intergenic
AGTACCAGCAATCCAGATTC+CGG 0.359409 8_2:-36004909 None:intergenic
ACAGGGATGTAAAAGAATAA+TGG 0.368359 8_2:-36001431 None:intergenic
ATGTGTGATGGCAGTATCTA+TGG 0.374144 8_2:+36001406 Msa1245790:CDS
ATCGTCTTTCAGTTTCGAAC+CGG 0.379722 8_2:+36001551 Msa1245790:CDS
AAACGAGCTGTTGGGGCTGC+TGG 0.382828 8_2:+36005333 Msa1245790:CDS
TAGAATCAGAGTTGCGTTGT+TGG 0.383396 8_2:+36002394 Msa1245790:CDS
GGAAAATGCCTTAATTTGAA+TGG 0.384868 8_2:+36001467 Msa1245790:CDS
ATGAAAAGCAATCATGGCCT+TGG 0.389771 8_2:-36005828 None:intergenic
GAAGGTTCGACGATGACATT+TGG 0.390337 8_2:+36003941 Msa1245790:intron
ACAACATTAAACCCGGAATC+TGG 0.391705 8_2:+36004897 Msa1245790:CDS
CTCTCTACTTTGGTTCCTAT+AGG 0.399678 8_2:+36000214 Msa1245790:five_prime_UTR
ATCAATTCTTCCACTTCCTC+AGG 0.406342 8_2:+36001679 Msa1245790:CDS
TTTGATTACAAGTCTTGGAT+TGG 0.411304 8_2:+36005785 Msa1245790:CDS
CATCCCTGTGATTGATGACC+AGG 0.414426 8_2:+36001445 Msa1245790:CDS
AACTCTTCTTCTCTCTACTT+TGG 0.416661 8_2:+36000204 Msa1245790:five_prime_UTR
GTACCAGCAATCCAGATTCC+GGG 0.416662 8_2:-36004908 None:intergenic
TATTTGTGATATTAGGTTGT+TGG 0.424525 8_2:+36002348 Msa1245790:intron
AAGGTCCACTACTTCAGAAA+TGG 0.424933 8_2:+36001363 Msa1245790:CDS
AAGACTACGAAAATGGGAAC+TGG 0.425872 8_2:+36005277 Msa1245790:CDS
CCTATAAATCATGAGTCAAC+AGG 0.429084 8_2:+36000710 Msa1245790:five_prime_UTR
ATATCAAGAAACGAGCTGTT+GGG 0.432818 8_2:+36005325 Msa1245790:CDS
ATTCCAAAATTGAAAACTGT+TGG 0.436075 8_2:-36002549 None:intergenic
TTCCAAAATTGAAAACTGTT+GGG 0.439910 8_2:-36002548 None:intergenic
AATGAAGTAACAAGCACTTC+TGG 0.448752 8_2:+36002157 Msa1245790:CDS
TCTTCTTTCTTTAACTCCCC+CGG 0.450373 8_2:-36004830 None:intergenic
GACAGATAGACTGAATTTCC+CGG 0.450514 8_2:+36004811 Msa1245790:CDS
TATCTCATTGCTATAGCAAA+AGG 0.451371 8_2:-36001626 None:intergenic
CGGTATTTGATTACAAGTCT+TGG 0.460729 8_2:+36005780 Msa1245790:CDS
CACTTGAATGCCACAGGTGG+AGG 0.462347 8_2:-36004096 None:intergenic
AAACCCGGAATCTGGATTGC+TGG 0.464365 8_2:+36004905 Msa1245790:CDS
TTGATTACAAGTCTTGGATT+GGG 0.468371 8_2:+36005786 Msa1245790:CDS
TCTGTGAAGACTACGAAAAT+GGG 0.468614 8_2:+36005271 Msa1245790:CDS
GTATAGATTCGCATGAGTCT+TGG 0.472590 8_2:-36002127 None:intergenic
CTGGCGAGTTCTTCTACATC+TGG 0.472677 8_2:+36005378 Msa1245790:CDS
TCTGCAGCTTGTGCGATGCC+CGG 0.478509 8_2:+36005033 Msa1245790:CDS
GTTAAAGAAAGAAGAAAGCA+TGG 0.485219 8_2:+36004838 Msa1245790:CDS
CTCCTACAAGTTCCGTCAGC+AGG 0.492280 8_2:+36004243 Msa1245790:CDS
TTGTTCCATTTCTGAAGTAG+TGG 0.494112 8_2:-36001368 None:intergenic
TGAAAAGCAATCATGGCCTT+GGG 0.500619 8_2:-36005827 None:intergenic
AAATGGGAACTGGGATTATG+AGG 0.502026 8_2:+36005287 Msa1245790:CDS
TTCCATATATAACAAAGGAT+TGG 0.506157 8_2:+36002074 Msa1245790:CDS
TGATCGTGCGGCGGAACCAT+CGG 0.507016 8_2:-36004020 None:intergenic
TCGTCTTTCAGTTTCGAACC+GGG 0.507612 8_2:+36001552 Msa1245790:CDS
AATGCCACAGGTGGAGGAGA+TGG 0.508135 8_2:-36004090 None:intergenic
TACTCCATGAAAAGCAATCA+TGG 0.509173 8_2:-36005834 None:intergenic
GATATCAAGAAACGAGCTGT+TGG 0.510075 8_2:+36005324 Msa1245790:CDS
GTTGGGCCAATAATATCATC+AGG 0.511144 8_2:-36002531 None:intergenic
TGGAAAATCTCTGATAATGC+TGG 0.513921 8_2:+36003987 Msa1245790:CDS
ATAGCAAAAGGATCATCAAC+CGG 0.516589 8_2:-36001614 None:intergenic
TATTCTGATACCTGAGGAAG+TGG 0.517630 8_2:-36001689 None:intergenic
GAGTCGTCCGCAGCTCAGAT+AGG 0.517792 8_2:-36002454 None:intergenic
CTCCACCTGTGGCATTCAAG+TGG 0.519260 8_2:+36004097 Msa1245790:CDS
TTTCCCTGGTCATCAATCAC+AGG 0.520770 8_2:-36001449 None:intergenic
GGAAATTCAGTCTATCTGTC+AGG 0.522965 8_2:-36004808 None:intergenic
TTAACTGAGACAGCATGGGC+TGG 0.523523 8_2:+36002184 Msa1245790:CDS
AACTGGGATTATGAGGTTGT+AGG 0.530268 8_2:+36005294 Msa1245790:CDS
ATATCATCAGGATCTTTGTA+AGG 0.531313 8_2:-36002519 None:intergenic
TTGCTCCACTTGAATGCCAC+AGG 0.532015 8_2:-36004102 None:intergenic
TGCTCTAACGTCTCGTGTGG+TGG 0.535752 8_2:+36002581 Msa1245790:CDS
ATCCTGCTGACGGAACTTGT+AGG 0.535841 8_2:-36004245 None:intergenic
ACTAATTTACAAGAAAATGA+AGG 0.538039 8_2:+36005866 Msa1245790:CDS
AATTACCATCACAAGTATTG+AGG 0.538205 8_2:-36005063 None:intergenic
TATAGGAACAATGCAGACAT+TGG 0.539902 8_2:+36005224 Msa1245790:intron
ACAGATAGACTGAATTTCCC+GGG 0.542816 8_2:+36004812 Msa1245790:CDS
TTCTGAAGTAGTGGACCTTG+TGG 0.543372 8_2:-36001359 None:intergenic
AGATAGGAATCATCAAAGAA+TGG 0.547757 8_2:-36002438 None:intergenic
CAATGCAGACATTGGATGCA+AGG 0.559581 8_2:+36005232 Msa1245790:CDS
GAGGGCTACTGAAGATTCAA+AGG 0.565838 8_2:-36004786 None:intergenic
CTCCACTTGAATGCCACAGG+TGG 0.571927 8_2:-36004099 None:intergenic
GAAATTGCGAAGTTTCTGGA+TGG 0.572344 8_2:+36003967 Msa1245790:CDS
TTACAAGTCTTGGATTGGGA+AGG 0.572360 8_2:+36005790 Msa1245790:CDS
AGTTCCATCTCCTCCACCTG+TGG 0.576848 8_2:+36004086 Msa1245790:CDS
CAGATGTAGAAGAACTCGCC+AGG 0.584311 8_2:-36005377 None:intergenic
TTAAACACTCTTTCTTAACA+AGG 0.586255 8_2:+36000145 Msa1245790:five_prime_UTR
CTATCAGATTGGATGCGCAT+CGG 0.586986 8_2:+36004755 Msa1245790:intron
CAAGTATTGAGGTCACAGAC+CGG 0.590572 8_2:-36005052 None:intergenic
CTCAGTTCCATATATAACAA+AGG 0.591567 8_2:+36002069 Msa1245790:CDS
AAGTATTGAGGTCACAGACC+GGG 0.591619 8_2:-36005051 None:intergenic
AGAACACTACACCTAGAAGC+TGG 0.593927 8_2:-36001332 None:intergenic
GGATTGGGAAGGATAATGAC+TGG 0.599131 8_2:+36005801 Msa1245790:CDS
CTTCTAATACTCACACCACA+TGG 0.600109 8_2:+36000098 None:intergenic
GTATATTAACTGAGACAGCA+TGG 0.602058 8_2:+36002179 Msa1245790:CDS
AACAGGAAAAGAAATTTGTG+AGG 0.603171 8_2:+36000727 Msa1245790:five_prime_UTR
CGAAGAAGGTGCAATAAACC+CGG 0.603746 8_2:-36001570 None:intergenic
TGTGACCTCAATACTTGTGA+TGG 0.607149 8_2:+36005058 Msa1245790:CDS
CAATGTGCTTATCCTGCTGA+CGG 0.608616 8_2:-36004255 None:intergenic
TATCAAGAAACGAGCTGTTG+GGG 0.611230 8_2:+36005326 Msa1245790:CDS
TTCCCTGGTCATCAATCACA+GGG 0.611426 8_2:-36001448 None:intergenic
GATGATTCCTATCTGAGCTG+CGG 0.614958 8_2:+36002447 Msa1245790:CDS
TTTCTGGACAACATTAAACC+CGG 0.617091 8_2:+36004890 Msa1245790:CDS
GAAACTATGTTGAAGACTCA+CGG 0.621215 8_2:+36004860 Msa1245790:CDS
TATATTAACTGAGACAGCAT+GGG 0.622764 8_2:+36002180 Msa1245790:CDS
GGATAATGACTGGCAACCCA+AGG 0.622772 8_2:+36005811 Msa1245790:CDS
TGCTGGCTGAAACGAACCGA+TGG 0.630232 8_2:+36004004 Msa1245790:CDS
AATTCAGTCTATCTGTCAGG+AGG 0.632675 8_2:-36004805 None:intergenic
CTTTGTTATAACATGTGTGA+TGG 0.634441 8_2:+36001394 Msa1245790:CDS
CGTCAGCAGGATAAGCACAT+TGG 0.644469 8_2:+36004256 Msa1245790:CDS
AGACTACGAAAATGGGAACT+GGG 0.645326 8_2:+36005278 Msa1245790:CDS
CAGATAGACTGAATTTCCCG+GGG 0.672636 8_2:+36004813 Msa1245790:CDS
GCAATGATTCCAATTCCACA+AGG 0.673079 8_2:+36002046 Msa1245790:CDS
TAGCATCATCCATGATCGTG+CGG 0.676733 8_2:-36004032 None:intergenic
TGATGCTCTAACGTCTCGTG+TGG 0.679720 8_2:+36002578 Msa1245790:CDS
ATTCAGTCTATCTGTCAGGA+GGG 0.680996 8_2:-36004804 None:intergenic
ATCCCTGTGATTGATGACCA+GGG 0.686356 8_2:+36001446 Msa1245790:CDS
CATCATCCATGATCGTGCGG+CGG 0.704868 8_2:-36004029 None:intergenic
TGTAGTGTTCTTGATCCACA+AGG 0.708088 8_2:+36001344 Msa1245790:CDS
ATATATGGAACTGAGCCTTG+TGG 0.739194 8_2:-36002061 None:intergenic
GTTCACACATCACAACCATG+TGG 0.746904 8_2:-36000113 None:intergenic
AGATAGACTGAATTTCCCGG+GGG 0.789122 8_2:+36004814 Msa1245790:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATTAGTTAAAAAATATGT+AGG - chr8_2:36000342-36000361 None:intergenic 10.0%
!! TACAAAATAAATAATGAAAT+TGG + chr8_2:36000537-36000556 Msa1245790:intron 10.0%
!! TTATTTAATTAAACTGAAAT+TGG - chr8_2:36001964-36001983 None:intergenic 10.0%
!! TTATTAATTATTAATTCGAA+TGG + chr8_2:36003913-36003932 Msa1245790:intron 10.0%
!! TAAGTTACCAATATATTAAA+AGG + chr8_2:36001806-36001825 Msa1245790:intron 15.0%
!!! TTTTCTATAGTTTTTATATG+TGG + chr8_2:36003738-36003757 Msa1245790:intron 15.0%
!! CTAATTAATATTTCCTCTTA+TGG + chr8_2:36000355-36000374 Msa1245790:intron 20.0%
!!! GATTGACTTATTATTGTTAT+TGG + chr8_2:36000416-36000435 Msa1245790:intron 20.0%
!!! CTCAACATTTTAGATTTAAA+AGG - chr8_2:36000935-36000954 None:intergenic 20.0%
!! AAATTGAAAAATAACCAACT+AGG - chr8_2:36001119-36001138 None:intergenic 20.0%
!!! AATGTTTCATTATTTTTTGC+TGG - chr8_2:36001305-36001324 None:intergenic 20.0%
!! AGCAAAAAATAATGAAACAT+TGG + chr8_2:36001304-36001323 Msa1245790:CDS 20.0%
!!! AAGTTCACCTTTTAATATAT+TGG - chr8_2:36001816-36001835 None:intergenic 20.0%
!! TCCAAATTATTTGTGATATT+AGG + chr8_2:36002341-36002360 Msa1245790:intron 20.0%
!! ACCTAATATCACAAATAATT+TGG - chr8_2:36002345-36002364 None:intergenic 20.0%
!! TAAGAACTTATACAAATGTT+TGG - chr8_2:36002817-36002836 None:intergenic 20.0%
!!! ATATCTTGTTTACTTAAGTA+AGG - chr8_2:36003294-36003313 None:intergenic 20.0%
!!! TTTGAAATTGAATTTTCAGA+TGG + chr8_2:36004214-36004233 Msa1245790:intron 20.0%
!!! TTGAAATTGAATTTTCAGAT+GGG + chr8_2:36004215-36004234 Msa1245790:intron 20.0%
!!! TTAATGCTTTTTTATCATTG+AGG + chr8_2:36004393-36004412 Msa1245790:intron 20.0%
!! TATAATATGTTCTATCAGAT+TGG + chr8_2:36004744-36004763 Msa1245790:intron 20.0%
!! CTTAAAGAAATACATTAACA+AGG - chr8_2:36005445-36005464 None:intergenic 20.0%
!!! TTTTGAAATTAATTTGTTCC+TGG - chr8_2:36005594-36005613 None:intergenic 20.0%
!!! ATTTTTAAATTAAATGGCAG+CGG + chr8_2:36005760-36005779 Msa1245790:intron 20.0%
!! ACTAATTTACAAGAAAATGA+AGG + chr8_2:36005866-36005885 Msa1245790:CDS 20.0%
!!! TTGTTAAGAAAGAGTGTTTA+AGG - chr8_2:36000146-36000165 None:intergenic 25.0%
! TTAAACACTCTTTCTTAACA+AGG + chr8_2:36000145-36000164 Msa1245790:five_prime_UTR 25.0%
! TCACACATAACTAGAAAAAA+AGG - chr8_2:36000614-36000633 None:intergenic 25.0%
!! CAAAAATTCTGATTTGAAGA+TGG + chr8_2:36000637-36000656 Msa1245790:intron 25.0%
! TCAAAATCTGCACTAAAATA+TGG - chr8_2:36000910-36000929 None:intergenic 25.0%
! CAATATGATTCTTCAATTGA+TGG + chr8_2:36001247-36001266 Msa1245790:exon 25.0%
! TCAATGTTCCATTCAAATTA+AGG - chr8_2:36001478-36001497 None:intergenic 25.0%
! CTTTATTCAAGCATATTCTA+AGG + chr8_2:36001721-36001740 Msa1245790:intron 25.0%
! TTCCATATATAACAAAGGAT+TGG + chr8_2:36002074-36002093 Msa1245790:CDS 25.0%
!! AACCAATCCTTTGTTATATA+TGG - chr8_2:36002079-36002098 None:intergenic 25.0%
! AAAACTTAGCTTAGTAAACA+AGG - chr8_2:36002301-36002320 None:intergenic 25.0%
!! TATTTGTGATATTAGGTTGT+TGG + chr8_2:36002348-36002367 Msa1245790:intron 25.0%
! AAAGATCCTGATGATATTAT+TGG + chr8_2:36002525-36002544 Msa1245790:CDS 25.0%
! TTCCAAAATTGAAAACTGTT+GGG - chr8_2:36002551-36002570 None:intergenic 25.0%
! ATTCCAAAATTGAAAACTGT+TGG - chr8_2:36002552-36002571 None:intergenic 25.0%
!! ATAAATTCTTCTACTGCTTT+TGG + chr8_2:36002625-36002644 Msa1245790:CDS 25.0%
! AAACACTGCAAATAAAGTTA+AGG - chr8_2:36002864-36002883 None:intergenic 25.0%
! ATAAGATGTCACAAAAATAG+TGG - chr8_2:36002898-36002917 None:intergenic 25.0%
!! ATTTTTGTGACATCTTATCA+AGG + chr8_2:36002900-36002919 Msa1245790:intron 25.0%
! TAAAGACAAGCACTTATATT+GGG + chr8_2:36002992-36003011 Msa1245790:intron 25.0%
! GTTCTATTTGCATTACTTAT+AGG + chr8_2:36003054-36003073 Msa1245790:intron 25.0%
!!! ATAAGCTTTGAAAAAAGTCT+TGG - chr8_2:36003214-36003233 None:intergenic 25.0%
!! TCGCTATCAAAAAACATTTT+AGG + chr8_2:36003256-36003275 Msa1245790:intron 25.0%
! ATCATGAATCATTTATCTGT+TGG + chr8_2:36003385-36003404 Msa1245790:intron 25.0%
! TCTGATGAAGTAAAGATTAT+AGG + chr8_2:36003424-36003443 Msa1245790:intron 25.0%
! TTAATTCGAATGGTTTATGA+AGG + chr8_2:36003923-36003942 Msa1245790:intron 25.0%
! TGTGAATCTCACAATATATT+AGG - chr8_2:36004308-36004327 None:intergenic 25.0%
! TTATGGAAATGAATTTGATG+TGG + chr8_2:36004355-36004374 Msa1245790:intron 25.0%
!!! ATAAAAAAGCATTAACTGTG+CGG - chr8_2:36004388-36004407 None:intergenic 25.0%
! CTGACAATTATATATGTACA+TGG + chr8_2:36004499-36004518 Msa1245790:intron 25.0%
!! AGAATTTTGCATAAGCAATA+AGG - chr8_2:36004529-36004548 None:intergenic 25.0%
! TATAAGAATGAATCAGTCAA+TGG - chr8_2:36004636-36004655 None:intergenic 25.0%
!! TGAATTATTCATGGTGTTAA+GGG - chr8_2:36005117-36005136 None:intergenic 25.0%
!! ATGAATTATTCATGGTGTTA+AGG - chr8_2:36005118-36005137 None:intergenic 25.0%
! AGAATAGAAACGTATATACA+CGG + chr8_2:36005528-36005547 Msa1245790:intron 25.0%
! TTTTCTGTTACCTTACCTAT+AGG - chr8_2:36000232-36000251 None:intergenic 30.0%
ATAGGTAAGGTAACAGAAAA+AGG + chr8_2:36000232-36000251 Msa1245790:intron 30.0%
TTTATCAAAACCAACCTTGA+TGG + chr8_2:36000262-36000281 Msa1245790:intron 30.0%
GAAAAACAGTAAAACCATCA+AGG - chr8_2:36000279-36000298 None:intergenic 30.0%
GATAAGTGTGAAATAGTAGA+GGG - chr8_2:36000307-36000326 None:intergenic 30.0%
AGATAAGTGTGAAATAGTAG+AGG - chr8_2:36000308-36000327 None:intergenic 30.0%
!! ATTTGAAGATGGATTTTGCA+GGG + chr8_2:36000648-36000667 Msa1245790:intron 30.0%
AACAGGAAAAGAAATTTGTG+AGG + chr8_2:36000727-36000746 Msa1245790:five_prime_UTR 30.0%
GTGAAATCCGAATTTGTATA+GGG - chr8_2:36000820-36000839 None:intergenic 30.0%
AGAGACTAAGCATAAATCTT+TGG + chr8_2:36001089-36001108 Msa1245790:intron 30.0%
!!! AAATCTTTGGTTTTCCTAGT+TGG + chr8_2:36001102-36001121 Msa1245790:intron 30.0%
! CTTTGTTATAACATGTGTGA+TGG + chr8_2:36001394-36001413 Msa1245790:CDS 30.0%
ACAGGGATGTAAAAGAATAA+TGG - chr8_2:36001434-36001453 None:intergenic 30.0%
! GGAAAATGCCTTAATTTGAA+TGG + chr8_2:36001467-36001486 Msa1245790:CDS 30.0%
TATCTCATTGCTATAGCAAA+AGG - chr8_2:36001629-36001648 None:intergenic 30.0%
! ATATTCTAAGGAGTTCACTA+AGG + chr8_2:36001733-36001752 Msa1245790:intron 30.0%
TTAACTAATGCTCTTAAGCA+TGG + chr8_2:36001892-36001911 Msa1245790:intron 30.0%
CTCAGTTCCATATATAACAA+AGG + chr8_2:36002069-36002088 Msa1245790:CDS 30.0%
TATATTAACTGAGACAGCAT+GGG + chr8_2:36002180-36002199 Msa1245790:CDS 30.0%
AGATAGGAATCATCAAAGAA+TGG - chr8_2:36002441-36002460 None:intergenic 30.0%
ATATCATCAGGATCTTTGTA+AGG - chr8_2:36002522-36002541 None:intergenic 30.0%
GTTAACTCTATAAGAACACA+AGG - chr8_2:36002709-36002728 None:intergenic 30.0%
GAACTTATACAAATGTTTGG+AGG - chr8_2:36002814-36002833 None:intergenic 30.0%
!! CTTTATTTGCAGTGTTTTGA+TGG + chr8_2:36002867-36002886 Msa1245790:intron 30.0%
!!! TTGTTTTTTGCAGTTCTGTT+GGG + chr8_2:36002962-36002981 Msa1245790:intron 30.0%
CAATATAAGTGCTTGTCTTT+AGG - chr8_2:36002993-36003012 None:intergenic 30.0%
CTAAAGACAAGCACTTATAT+TGG + chr8_2:36002991-36003010 Msa1245790:intron 30.0%
AAAGACAAGCACTTATATTG+GGG + chr8_2:36002993-36003012 Msa1245790:intron 30.0%
ATTACTTATAGGAAACATGC+AGG + chr8_2:36003065-36003084 Msa1245790:intron 30.0%
AGTACACTATATATGTGACT+AGG - chr8_2:36003363-36003382 None:intergenic 30.0%
TTGAAGAGATGAGAATCAAA+AGG + chr8_2:36003499-36003518 Msa1245790:intron 30.0%
AATCAATGTTAATCAGACAG+TGG - chr8_2:36004195-36004214 None:intergenic 30.0%
CAATAACTCTTGTCAATCTA+AGG - chr8_2:36004461-36004480 None:intergenic 30.0%
AATTGTCAGATCTAGATTCA+GGG - chr8_2:36004488-36004507 None:intergenic 30.0%
TAATTGTCAGATCTAGATTC+AGG - chr8_2:36004489-36004508 None:intergenic 30.0%
TCAATGGTTGGATAAATTCT+AGG - chr8_2:36004620-36004639 None:intergenic 30.0%
GTTAAAGAAAGAAGAAAGCA+TGG + chr8_2:36004838-36004857 Msa1245790:CDS 30.0%
AGTGATAGCTATATAGTCAA+AGG - chr8_2:36004944-36004963 None:intergenic 30.0%
! AATTACCATCACAAGTATTG+AGG - chr8_2:36005066-36005085 None:intergenic 30.0%
AACCACTGATGAATTATTCA+TGG - chr8_2:36005126-36005145 None:intergenic 30.0%
GTAATGACATGACATTAGAT+TGG - chr8_2:36005483-36005502 None:intergenic 30.0%
TCTATACATTCATTCTTCAC+TGG - chr8_2:36005567-36005586 None:intergenic 30.0%
AATGAATGTATAGATAGTCC+AGG + chr8_2:36005573-36005592 Msa1245790:intron 30.0%
!! TTCCGAATGATTATTGGTTT+GGG + chr8_2:36005626-36005645 Msa1245790:intron 30.0%
TAGTAACTATCTTCTTGGAA+GGG - chr8_2:36005704-36005723 None:intergenic 30.0%
TTAGTAACTATCTTCTTGGA+AGG - chr8_2:36005705-36005724 None:intergenic 30.0%
GAACTTAGTAACTATCTTCT+TGG - chr8_2:36005709-36005728 None:intergenic 30.0%
TTTGATTACAAGTCTTGGAT+TGG + chr8_2:36005785-36005804 Msa1245790:CDS 30.0%
TTGATTACAAGTCTTGGATT+GGG + chr8_2:36005786-36005805 Msa1245790:CDS 30.0%
AACTCTTCTTCTCTCTACTT+TGG + chr8_2:36000204-36000223 Msa1245790:five_prime_UTR 35.0%
! TACTTTGGTTCCTATAGGTA+AGG + chr8_2:36000219-36000238 Msa1245790:intron 35.0%
AACAGTAAAACCATCAAGGT+TGG - chr8_2:36000275-36000294 None:intergenic 35.0%
TCCTCTTATGGTTCATATGA+AGG + chr8_2:36000367-36000386 Msa1245790:intron 35.0%
!! GATTTGAAGATGGATTTTGC+AGG + chr8_2:36000647-36000666 Msa1245790:intron 35.0%
!! CCTGTTGACTCATGATTTAT+AGG - chr8_2:36000713-36000732 None:intergenic 35.0%
CCTATAAATCATGAGTCAAC+AGG + chr8_2:36000710-36000729 Msa1245790:five_prime_UTR 35.0%
TATAGGGCAACTGAAACAAT+AGG - chr8_2:36000804-36000823 None:intergenic 35.0%
TCAGTTGCCCTATACAAATT+CGG + chr8_2:36000810-36000829 Msa1245790:intron 35.0%
CGTGAAATCCGAATTTGTAT+AGG - chr8_2:36000821-36000840 None:intergenic 35.0%
ACTACGTGAATTAGTGCAAT+CGG - chr8_2:36000850-36000869 None:intergenic 35.0%
TTGTGAATTTGGATTCCTTG+CGG - chr8_2:36001036-36001055 None:intergenic 35.0%
! GTACTGCTAACTTGTGAATT+TGG - chr8_2:36001047-36001066 None:intergenic 35.0%
TTCTGTCCAGATTTGAAGAT+TGG + chr8_2:36001194-36001213 Msa1245790:intron 35.0%
TGACTTCCAATCTTCAAATC+TGG - chr8_2:36001203-36001222 None:intergenic 35.0%
!!! TTTTTTGCTGGAGTAACACT+TGG - chr8_2:36001293-36001312 None:intergenic 35.0%
!! TTGTTCCATTTCTGAAGTAG+TGG - chr8_2:36001371-36001390 None:intergenic 35.0%
!! TCAAATTAAGGCATTTTCCC+TGG - chr8_2:36001466-36001485 None:intergenic 35.0%
ATAGCAAAAGGATCATCAAC+CGG - chr8_2:36001617-36001636 None:intergenic 35.0%
! CGTAATGATGTGTTGATAGA+TGG + chr8_2:36002015-36002034 Msa1245790:intron 35.0%
AATGAAGTAACAAGCACTTC+TGG + chr8_2:36002157-36002176 Msa1245790:CDS 35.0%
GTATATTAACTGAGACAGCA+TGG + chr8_2:36002179-36002198 Msa1245790:CDS 35.0%
!! ATTAGGTTGTTGGAGCATTT+TGG + chr8_2:36002358-36002377 Msa1245790:intron 35.0%
!! AATTCTTCTACTGCTTTTGG+TGG + chr8_2:36002628-36002647 Msa1245790:CDS 35.0%
!! ATTCTTCTACTGCTTTTGGT+GGG + chr8_2:36002629-36002648 Msa1245790:CDS 35.0%
!!! GTTGTTTTTTGCAGTTCTGT+TGG + chr8_2:36002961-36002980 Msa1245790:intron 35.0%
! ATAAGTCAGACTGACTTACA+AGG + chr8_2:36003127-36003146 Msa1245790:intron 35.0%
! TAAGTCAGACTGACTTACAA+GGG + chr8_2:36003128-36003147 Msa1245790:intron 35.0%
ACATGTGTCTGATATAGACT+AGG - chr8_2:36003161-36003180 None:intergenic 35.0%
! CTTTGAAAAAAGTCTTGGCT+TGG - chr8_2:36003209-36003228 None:intergenic 35.0%
CTTAAGTAAGGTGACTTGAT+AGG - chr8_2:36003282-36003301 None:intergenic 35.0%
AAGAGATGAGAATCAAAAGG+AGG + chr8_2:36003502-36003521 Msa1245790:intron 35.0%
AGAGATGAGAATCAAAAGGA+GGG + chr8_2:36003503-36003522 Msa1245790:intron 35.0%
ATTCTTTGCTTCAAGTGATC+CGG - chr8_2:36003561-36003580 None:intergenic 35.0%
ACTTGAAGCAAAGAATTCGA+CGG + chr8_2:36003565-36003584 Msa1245790:intron 35.0%
! TGGAAAATCTCTGATAATGC+TGG + chr8_2:36003987-36004006 Msa1245790:CDS 35.0%
! ATGAACATTGATGAAGGTGT+AGG - chr8_2:36004161-36004180 None:intergenic 35.0%
CCATTCATGAACATTGATGA+AGG - chr8_2:36004167-36004186 None:intergenic 35.0%
CCTTCATCAATGTTCATGAA+TGG + chr8_2:36004164-36004183 Msa1245790:intron 35.0%
ATAGATTCCACACACAGTTA+TGG + chr8_2:36004338-36004357 Msa1245790:intron 35.0%
TTCATTTCCATAACTGTGTG+TGG - chr8_2:36004348-36004367 None:intergenic 35.0%
AGAATGAATCAGTCAATGGT+TGG - chr8_2:36004632-36004651 None:intergenic 35.0%
GAAACTATGTTGAAGACTCA+CGG + chr8_2:36004860-36004879 Msa1245790:CDS 35.0%
TTTCTGGACAACATTAAACC+CGG + chr8_2:36004890-36004909 Msa1245790:CDS 35.0%
GCTATATAGTCAAAGGTAAC+CGG - chr8_2:36004937-36004956 None:intergenic 35.0%
CACCATGAATAATTCATCAG+TGG + chr8_2:36005121-36005140 Msa1245790:intron 35.0%
TATTCTAATGCAAACCCTTG+CGG - chr8_2:36005160-36005179 None:intergenic 35.0%
CAAGGGTTTGCATTAGAATA+AGG + chr8_2:36005160-36005179 Msa1245790:intron 35.0%
TGCATTGTTCCTATATAAGC+AGG - chr8_2:36005219-36005238 None:intergenic 35.0%
TATAGGAACAATGCAGACAT+TGG + chr8_2:36005224-36005243 Msa1245790:intron 35.0%
TCTGTGAAGACTACGAAAAT+GGG + chr8_2:36005271-36005290 Msa1245790:CDS 35.0%
ATATCAAGAAACGAGCTGTT+GGG + chr8_2:36005325-36005344 Msa1245790:CDS 35.0%
CAGGTGTTTGACATCAAAAA+TGG - chr8_2:36005361-36005380 None:intergenic 35.0%
! CATTTTTGATGTCAAACACC+TGG + chr8_2:36005359-36005378 Msa1245790:CDS 35.0%
ATGACATGACATTAGATTGG+TGG - chr8_2:36005480-36005499 None:intergenic 35.0%
TGAAGCTTCCGAATGATTAT+TGG + chr8_2:36005620-36005639 Msa1245790:intron 35.0%
! CTTCCGAATGATTATTGGTT+TGG + chr8_2:36005625-36005644 Msa1245790:intron 35.0%
!! TCCGAATGATTATTGGTTTG+GGG + chr8_2:36005627-36005646 Msa1245790:intron 35.0%
TCCCCAAACCAATAATCATT+CGG - chr8_2:36005631-36005650 None:intergenic 35.0%
CGGTATTTGATTACAAGTCT+TGG + chr8_2:36005780-36005799 Msa1245790:CDS 35.0%
TACTCCATGAAAAGCAATCA+TGG - chr8_2:36005837-36005856 None:intergenic 35.0%
! CTCTCTACTTTGGTTCCTAT+AGG + chr8_2:36000214-36000233 Msa1245790:five_prime_UTR 40.0%
GCCTTCATATGAACCATAAG+AGG - chr8_2:36000371-36000390 None:intergenic 40.0%
!! ATCCTTCTCTCAGGTTGATA+TGG + chr8_2:36000392-36000411 Msa1245790:intron 40.0%
GTATGACTATTAGTGCTGCA+TGG - chr8_2:36000578-36000597 None:intergenic 40.0%
AATTCACGTAGTCAGCACAT+CGG + chr8_2:36000858-36000877 Msa1245790:intron 40.0%
ACCAACTGATCTCTATCCAA+AGG + chr8_2:36000967-36000986 Msa1245790:intron 40.0%
ACCTTTGGATAGAGATCAGT+TGG - chr8_2:36000971-36000990 None:intergenic 40.0%
CATTGGAAAAACCAGCTTCT+AGG + chr8_2:36001321-36001340 Msa1245790:CDS 40.0%
TGTAGTGTTCTTGATCCACA+AGG + chr8_2:36001344-36001363 Msa1245790:CDS 40.0%
AAGGTCCACTACTTCAGAAA+TGG + chr8_2:36001363-36001382 Msa1245790:CDS 40.0%
ATGTGTGATGGCAGTATCTA+TGG + chr8_2:36001406-36001425 Msa1245790:CDS 40.0%
ATCGTCTTTCAGTTTCGAAC+CGG + chr8_2:36001551-36001570 Msa1245790:CDS 40.0%
!! TTCTTCGCGCATTTTTGGAA+GGG + chr8_2:36001586-36001605 Msa1245790:CDS 40.0%
ATCAATTCTTCCACTTCCTC+AGG + chr8_2:36001679-36001698 Msa1245790:CDS 40.0%
TATTCTGATACCTGAGGAAG+TGG - chr8_2:36001692-36001711 None:intergenic 40.0%
GTACTGTATTCTGATACCTG+AGG - chr8_2:36001698-36001717 None:intergenic 40.0%
AGCATGGTTAACAGTATCGT+AGG + chr8_2:36001908-36001927 Msa1245790:intron 40.0%
GCAATGATTCCAATTCCACA+AGG + chr8_2:36002046-36002065 Msa1245790:CDS 40.0%
ATATATGGAACTGAGCCTTG+TGG - chr8_2:36002064-36002083 None:intergenic 40.0%
GTATAGATTCGCATGAGTCT+TGG - chr8_2:36002130-36002149 None:intergenic 40.0%
TAGAATCAGAGTTGCGTTGT+TGG + chr8_2:36002394-36002413 Msa1245790:CDS 40.0%
GTTGGGCCAATAATATCATC+AGG - chr8_2:36002534-36002553 None:intergenic 40.0%
! GGCCCAACAGTTTTCAATTT+TGG + chr8_2:36002546-36002565 Msa1245790:CDS 40.0%
!! TTCTTCTACTGCTTTTGGTG+GGG + chr8_2:36002630-36002649 Msa1245790:CDS 40.0%
TCCAAAGACAGCAATGAAGA+TGG - chr8_2:36003031-36003050 None:intergenic 40.0%
CTTCATTGCTGTCTTTGGAT+TGG + chr8_2:36003032-36003051 Msa1245790:intron 40.0%
CATGCAGGTAATCCTTAGTA+AGG + chr8_2:36003080-36003099 Msa1245790:intron 40.0%
CAGGTAATCCTTAGTAAGGA+AGG + chr8_2:36003084-36003103 Msa1245790:intron 40.0%
TCTGATATAGACTAGGTCGT+AGG - chr8_2:36003154-36003173 None:intergenic 40.0%
GACTGAAATTGCGAAGTTTC+TGG + chr8_2:36003963-36003982 Msa1245790:CDS 40.0%
! GAAATTGCGAAGTTTCTGGA+TGG + chr8_2:36003967-36003986 Msa1245790:CDS 40.0%
CGATCATGGATGATGCTATT+TGG + chr8_2:36004037-36004056 Msa1245790:CDS 40.0%
! AAGCTCTACACTTCAGCTTT+TGG + chr8_2:36004123-36004142 Msa1245790:CDS 40.0%
ATTCAGTCTATCTGTCAGGA+GGG - chr8_2:36004807-36004826 None:intergenic 40.0%
AATTCAGTCTATCTGTCAGG+AGG - chr8_2:36004808-36004827 None:intergenic 40.0%
GGAAATTCAGTCTATCTGTC+AGG - chr8_2:36004811-36004830 None:intergenic 40.0%
GACAGATAGACTGAATTTCC+CGG + chr8_2:36004811-36004830 Msa1245790:CDS 40.0%
ACAGATAGACTGAATTTCCC+GGG + chr8_2:36004812-36004831 Msa1245790:CDS 40.0%
TCTTCTTTCTTTAACTCCCC+CGG - chr8_2:36004833-36004852 None:intergenic 40.0%
ACAACATTAAACCCGGAATC+TGG + chr8_2:36004897-36004916 Msa1245790:CDS 40.0%
TGTGACCTCAATACTTGTGA+TGG + chr8_2:36005058-36005077 Msa1245790:CDS 40.0%
! GTTACTGTTTTGTACCGCAA+GGG + chr8_2:36005143-36005162 Msa1245790:intron 40.0%
CACGTTTCTCCTGCTTATAT+AGG + chr8_2:36005207-36005226 Msa1245790:intron 40.0%
! CATTTTCGTAGTCTTCACAG+AGG - chr8_2:36005272-36005291 None:intergenic 40.0%
CTCTGTGAAGACTACGAAAA+TGG + chr8_2:36005270-36005289 Msa1245790:CDS 40.0%
AAGACTACGAAAATGGGAAC+TGG + chr8_2:36005277-36005296 Msa1245790:CDS 40.0%
AGACTACGAAAATGGGAACT+GGG + chr8_2:36005278-36005297 Msa1245790:CDS 40.0%
AAATGGGAACTGGGATTATG+AGG + chr8_2:36005287-36005306 Msa1245790:CDS 40.0%
AACTGGGATTATGAGGTTGT+AGG + chr8_2:36005294-36005313 Msa1245790:CDS 40.0%
GATATCAAGAAACGAGCTGT+TGG + chr8_2:36005324-36005343 Msa1245790:CDS 40.0%
TATCAAGAAACGAGCTGTTG+GGG + chr8_2:36005326-36005345 Msa1245790:CDS 40.0%
! TTACAAGTCTTGGATTGGGA+AGG + chr8_2:36005790-36005809 Msa1245790:CDS 40.0%
TGAAAAGCAATCATGGCCTT+GGG - chr8_2:36005830-36005849 None:intergenic 40.0%
ATGAAAAGCAATCATGGCCT+TGG - chr8_2:36005831-36005850 None:intergenic 40.0%
!! AAGGCCATGATTGCTTTTCA+TGG + chr8_2:36005830-36005849 Msa1245790:CDS 40.0%
GTTCACACATCACAACCATG+TGG - chr8_2:36000116-36000135 None:intergenic 45.0%
ATGAAGGCAATCCTTCTCTC+AGG + chr8_2:36000383-36000402 Msa1245790:intron 45.0%
CTCCATATCAACCTGAGAGA+AGG - chr8_2:36000397-36000416 None:intergenic 45.0%
GTCGTTTGATCGAGATCGAA+CGG + chr8_2:36000883-36000902 Msa1245790:intron 45.0%
TAACACAGTCAGCAGCACAT+CGG - chr8_2:36000996-36001015 None:intergenic 45.0%
GTTAACAATCGATGACCGCA+AGG + chr8_2:36001018-36001037 Msa1245790:intron 45.0%
AGAACACTACACCTAGAAGC+TGG - chr8_2:36001335-36001354 None:intergenic 45.0%
!! TTCTGAAGTAGTGGACCTTG+TGG - chr8_2:36001362-36001381 None:intergenic 45.0%
! ATCCCTGTGATTGATGACCA+GGG + chr8_2:36001446-36001465 Msa1245790:CDS 45.0%
TTCCCTGGTCATCAATCACA+GGG - chr8_2:36001451-36001470 None:intergenic 45.0%
TTTCCCTGGTCATCAATCAC+AGG - chr8_2:36001452-36001471 None:intergenic 45.0%
TCGTCTTTCAGTTTCGAACC+GGG + chr8_2:36001552-36001571 Msa1245790:CDS 45.0%
! CGAAGAAGGTGCAATAAACC+CGG - chr8_2:36001573-36001592 None:intergenic 45.0%
CTTCCAAAAATGCGCGAAGA+AGG - chr8_2:36001587-36001606 None:intergenic 45.0%
!! CTTCTTCGCGCATTTTTGGA+AGG + chr8_2:36001585-36001604 Msa1245790:CDS 45.0%
!! TCTTCGCGCATTTTTGGAAG+GGG + chr8_2:36001587-36001606 Msa1245790:CDS 45.0%
GATGATTCCTATCTGAGCTG+CGG + chr8_2:36002447-36002466 Msa1245790:CDS 45.0%
! GGGTTTGCGCAATTTAAGGT+TGG + chr8_2:36002650-36002669 Msa1245790:intron 45.0%
GTTCTTGATCTTCTCTGCGT+AGG + chr8_2:36002672-36002691 Msa1245790:intron 45.0%
GCCATCTTCATTGCTGTCTT+TGG + chr8_2:36003027-36003046 Msa1245790:intron 45.0%
CTCAGAGTCCTTCCTTACTA+AGG - chr8_2:36003095-36003114 None:intergenic 45.0%
AAAGGAGGGATGCAGAACAA+TGG + chr8_2:36003517-36003536 Msa1245790:intron 45.0%
TCAAGTGATCCGGTAGCATA+CGG - chr8_2:36003551-36003570 None:intergenic 45.0%
GAAGGTTCGACGATGACATT+TGG + chr8_2:36003941-36003960 Msa1245790:intron 45.0%
TAGCATCATCCATGATCGTG+CGG - chr8_2:36004035-36004054 None:intergenic 45.0%
CAATGTGCTTATCCTGCTGA+CGG - chr8_2:36004258-36004277 None:intergenic 45.0%
CTATCAGATTGGATGCGCAT+CGG + chr8_2:36004755-36004774 Msa1245790:intron 45.0%
GAGGGCTACTGAAGATTCAA+AGG - chr8_2:36004789-36004808 None:intergenic 45.0%
CAGATAGACTGAATTTCCCG+GGG + chr8_2:36004813-36004832 Msa1245790:CDS 45.0%
AGATAGACTGAATTTCCCGG+GGG + chr8_2:36004814-36004833 Msa1245790:CDS 45.0%
CTTCTTTCTTTAACTCCCCC+GGG - chr8_2:36004832-36004851 None:intergenic 45.0%
AGTACCAGCAATCCAGATTC+CGG - chr8_2:36004912-36004931 None:intergenic 45.0%
!! AAGTATTGAGGTCACAGACC+GGG - chr8_2:36005054-36005073 None:intergenic 45.0%
!! CAAGTATTGAGGTCACAGAC+CGG - chr8_2:36005055-36005074 None:intergenic 45.0%
! GGTTACTGTTTTGTACCGCA+AGG + chr8_2:36005142-36005161 Msa1245790:intron 45.0%
CAATGCAGACATTGGATGCA+AGG + chr8_2:36005232-36005251 Msa1245790:CDS 45.0%
! TTAACAAGGCCACTGACTGT+TGG - chr8_2:36005431-36005450 None:intergenic 45.0%
GGATTGGGAAGGATAATGAC+TGG + chr8_2:36005801-36005820 Msa1245790:CDS 45.0%
!!! GTTTTAATTTTTAAATTAAA+TGG + chr8_2:36005754-36005773 Msa1245790:intron 5.0%
! CATCCCTGTGATTGATGACC+AGG + chr8_2:36001445-36001464 Msa1245790:CDS 50.0%
! GCACCTTCTTCGCGCATTTT+TGG + chr8_2:36001581-36001600 Msa1245790:CDS 50.0%
!! CATTTTTGGAAGGGGAGAGC+CGG + chr8_2:36001595-36001614 Msa1245790:CDS 50.0%
! GGAACTGAGCCTTGTGGAAT+TGG - chr8_2:36002058-36002077 None:intergenic 50.0%
TTAACTGAGACAGCATGGGC+TGG + chr8_2:36002184-36002203 Msa1245790:CDS 50.0%
TGATGCTCTAACGTCTCGTG+TGG + chr8_2:36002578-36002597 Msa1245790:CDS 50.0%
GGTGGGGTTTGCGCAATTTA+AGG + chr8_2:36002646-36002665 Msa1245790:CDS 50.0%
TTGCTCCACTTGAATGCCAC+AGG - chr8_2:36004105-36004124 None:intergenic 50.0%
ATCCTGCTGACGGAACTTGT+AGG - chr8_2:36004248-36004267 None:intergenic 50.0%
CGTCAGCAGGATAAGCACAT+TGG + chr8_2:36004256-36004275 Msa1245790:CDS 50.0%
!! GACTCACGGTTGTTGCTTTC+TGG + chr8_2:36004874-36004893 Msa1245790:CDS 50.0%
AAACCCGGAATCTGGATTGC+TGG + chr8_2:36004905-36004924 Msa1245790:CDS 50.0%
GTACCAGCAATCCAGATTCC+GGG - chr8_2:36004911-36004930 None:intergenic 50.0%
TCTGGATTGCTGGTACTCTC+CGG + chr8_2:36004915-36004934 Msa1245790:intron 50.0%
CAGATGTAGAAGAACTCGCC+AGG - chr8_2:36005380-36005399 None:intergenic 50.0%
CTGGCGAGTTCTTCTACATC+TGG + chr8_2:36005378-36005397 Msa1245790:CDS 50.0%
! GTCGACTTACCAACAGTCAG+TGG + chr8_2:36005419-36005438 Msa1245790:intron 50.0%
GGATAATGACTGGCAACCCA+AGG + chr8_2:36005811-36005830 Msa1245790:CDS 50.0%
TCACGTAGTCAGCACATCGG+TGG + chr8_2:36000861-36000880 Msa1245790:intron 55.0%
AGCAGCACATCGGTGACCTT+TGG - chr8_2:36000986-36001005 None:intergenic 55.0%
TGCTCTAACGTCTCGTGTGG+TGG + chr8_2:36002581-36002600 Msa1245790:CDS 55.0%
GATGTGCCACCGTATGCTAC+CGG + chr8_2:36003539-36003558 Msa1245790:intron 55.0%
AGTGATCCGGTAGCATACGG+TGG - chr8_2:36003548-36003567 None:intergenic 55.0%
! TGCTGGCTGAAACGAACCGA+TGG + chr8_2:36004004-36004023 Msa1245790:CDS 55.0%
CATCATCCATGATCGTGCGG+CGG - chr8_2:36004032-36004051 None:intergenic 55.0%
AGTTCCATCTCCTCCACCTG+TGG + chr8_2:36004086-36004105 Msa1245790:CDS 55.0%
AATGCCACAGGTGGAGGAGA+TGG - chr8_2:36004093-36004112 None:intergenic 55.0%
CACTTGAATGCCACAGGTGG+AGG - chr8_2:36004099-36004118 None:intergenic 55.0%
CTCCACCTGTGGCATTCAAG+TGG + chr8_2:36004097-36004116 Msa1245790:CDS 55.0%
CTCCACTTGAATGCCACAGG+TGG - chr8_2:36004102-36004121 None:intergenic 55.0%
CTCCTACAAGTTCCGTCAGC+AGG + chr8_2:36004243-36004262 Msa1245790:CDS 55.0%
GAGTCGTCCGCAGCTCAGAT+AGG - chr8_2:36002457-36002476 None:intergenic 60.0%
TGATCGTGCGGCGGAACCAT+CGG - chr8_2:36004023-36004042 None:intergenic 60.0%
ATGGTTCCGCCGCACGATCA+TGG + chr8_2:36004023-36004042 Msa1245790:CDS 60.0%
TCTGCAGCTTGTGCGATGCC+CGG + chr8_2:36005033-36005052 Msa1245790:CDS 60.0%
AAACGAGCTGTTGGGGCTGC+TGG + chr8_2:36005333-36005352 Msa1245790:CDS 60.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 36000113 36005892 36000113 ID=Msa1245790;Name=Msa1245790
chr8_2 mRNA 36000113 36005892 36000113 ID=Msa1245790-mRNA-1;Parent=Msa1245790;Name=Msa1245790-mRNA-1;_AED=0.14;_eAED=0.14;_QI=260|0.4|0.45|1|0.8|0.81|11|0|569
chr8_2 exon 36000113 36000235 36000113 ID=Msa1245790-mRNA-1:exon:11435;Parent=Msa1245790-mRNA-1
chr8_2 exon 36000659 36000748 36000659 ID=Msa1245790-mRNA-1:exon:11436;Parent=Msa1245790-mRNA-1
chr8_2 exon 36001204 36001700 36001204 ID=Msa1245790-mRNA-1:exon:11437;Parent=Msa1245790-mRNA-1
chr8_2 exon 36002034 36002246 36002034 ID=Msa1245790-mRNA-1:exon:11438;Parent=Msa1245790-mRNA-1
chr8_2 exon 36002363 36002667 36002363 ID=Msa1245790-mRNA-1:exon:11439;Parent=Msa1245790-mRNA-1
chr8_2 exon 36003945 36004144 36003945 ID=Msa1245790-mRNA-1:exon:11440;Parent=Msa1245790-mRNA-1
chr8_2 exon 36004233 36004277 36004233 ID=Msa1245790-mRNA-1:exon:11441;Parent=Msa1245790-mRNA-1
chr8_2 exon 36004762 36004926 36004762 ID=Msa1245790-mRNA-1:exon:11442;Parent=Msa1245790-mRNA-1
chr8_2 exon 36005032 36005079 36005032 ID=Msa1245790-mRNA-1:exon:11443;Parent=Msa1245790-mRNA-1
chr8_2 exon 36005229 36005399 36005229 ID=Msa1245790-mRNA-1:exon:11444;Parent=Msa1245790-mRNA-1
chr8_2 exon 36005780 36005892 36005780 ID=Msa1245790-mRNA-1:exon:11445;Parent=Msa1245790-mRNA-1
chr8_2 five_prime_UTR 36000113 36000235 36000113 ID=Msa1245790-mRNA-1:five_prime_utr;Parent=Msa1245790-mRNA-1
chr8_2 five_prime_UTR 36000659 36000748 36000659 ID=Msa1245790-mRNA-1:five_prime_utr;Parent=Msa1245790-mRNA-1
chr8_2 five_prime_UTR 36001204 36001250 36001204 ID=Msa1245790-mRNA-1:five_prime_utr;Parent=Msa1245790-mRNA-1
chr8_2 CDS 36001251 36001700 36001251 ID=Msa1245790-mRNA-1:cds;Parent=Msa1245790-mRNA-1
chr8_2 CDS 36002034 36002246 36002034 ID=Msa1245790-mRNA-1:cds;Parent=Msa1245790-mRNA-1
chr8_2 CDS 36002363 36002667 36002363 ID=Msa1245790-mRNA-1:cds;Parent=Msa1245790-mRNA-1
chr8_2 CDS 36003945 36004144 36003945 ID=Msa1245790-mRNA-1:cds;Parent=Msa1245790-mRNA-1
chr8_2 CDS 36004233 36004277 36004233 ID=Msa1245790-mRNA-1:cds;Parent=Msa1245790-mRNA-1
chr8_2 CDS 36004762 36004926 36004762 ID=Msa1245790-mRNA-1:cds;Parent=Msa1245790-mRNA-1
chr8_2 CDS 36005032 36005079 36005032 ID=Msa1245790-mRNA-1:cds;Parent=Msa1245790-mRNA-1
chr8_2 CDS 36005229 36005399 36005229 ID=Msa1245790-mRNA-1:cds;Parent=Msa1245790-mRNA-1
chr8_2 CDS 36005780 36005892 36005780 ID=Msa1245790-mRNA-1:cds;Parent=Msa1245790-mRNA-1
Gene Sequence

>Msa1245790

ATGATTCTTCAATTGATGGATTTGAAAAAAAAATCTAAACCAAGTGTTACTCCAGCAAAAAATAATGAAACATTGGAAAAACCAGCTTCTAGGTGTAGTGTTCTTGATCCACAAGGTCCACTACTTCAGAAATGGAACAAGATCTTTGTTATAACATGTGTGATGGCAGTATCTATGGATCCATTATTCTTTTACATCCCTGTGATTGATGACCAGGGAAAATGCCTTAATTTGAATGGAACATTGAAGATTACTGCTAGTGTTCTTCGCACGTTTTTCGATCTTTTCTACATTATTCGCATCGTCTTTCAGTTTCGAACCGGGTTTATTGCACCTTCTTCGCGCATTTTTGGAAGGGGAGAGCCGGTTGATGATCCTTTTGCTATAGCAATGAGATACTTAAGTTCTCACTTCATCATTGACATTCTATCAATTCTTCCACTTCCTCAGATGGTGATTTTAGCAATGATTCCAATTCCACAAGGCTCAGTTCCATATATAACAAAGGATTGGTTGAAGTATACGATAATAACACAGTACGCGCCAAGACTCATGCGAATCTATACGTTGTTCAATGAAGTAACAAGCACTTCTGGTATATTAACTGAGACAGCATGGGCTGGAGCTGCTTATAATCTATTTCTTTATATGCTAGCAAGTCATGTTGTTGGAGCATTTTGGTATTTGTTTTCGATAGAATCAGAGTTGCGTTGTTGGCGTAGACGATTGAAGAATACTCCATTCTTTGATGATTCCTATCTGAGCTGCGGACGACTCAATTCGACGCTTTTTTCAATTCTCAACAATTCTACAACTTGTCCTTACAAAGATCCTGATGATATTATTGGCCCAACAGTTTTCAATTTTGGAATATTTATTGATGCTCTAACGTCTCGTGTGGTGGAGTTGAATACAAACTTTCATCATAAATTCTTCTACTGCTTTTGGTGGGGTTTGCGCAATTTAAGGTTCGACGATGACATTTGGACTGAAATTGCGAAGTTTCTGGATGGAAAATCTCTGATAATGCTGGCTGAAACGAACCGATGGTTCCGCCGCACGATCATGGATGATGCTATTTGGAAGTTCGTTTGCTTGCGTGATCTTCAAGTTCCATCTCCTCCACCTGTGGCATTCAAGTGGAGCAAGCTCTACACTTCAGCTTTTGATGGGAGTCACTCCTACAAGTTCCGTCAGCAGGATAAGCACATTGATTGGATGCGCATCGGTGCTTTTTCCTTTGAATCTTCAGTAGCCCTCCTGACAGATAGACTGAATTTCCCGGGGGAGTTAAAGAAAGAAGAAAGCATGGAAACTATGTTGAAGACTCACGGTTGTTGCTTTCTGGACAACATTAAACCCGGAATCTGGATTGCTGATCTGCAGCTTGTGCGATGCCCGGTCTGTGACCTCAATACTTGTGATGGAACAATGCAGACATTGGATGCAAGGCATATAGAGCTGTTCCTCTGTGAAGACTACGAAAATGGGAACTGGGATTATGAGGTTGTAGGATCTCATGATATCAAGAAACGAGCTGTTGGGGCTGCTGGCTCCATTTTTGATGTCAAACACCTGGCGAGTTCTTCTACATCTGCGGTATTTGATTACAAGTCTTGGATTGGGAAGGATAATGACTGGCAACCCAAGGCCATGATTGCTTTTCATGGAGTAGCTGTGAACACTAATTTACAAGAAAATGAAGGTTAG
Protein sequence

>Msa1245790

MILQLMDLKKKSKPSVTPAKNNETLEKPASRCSVLDPQGPLLQKWNKIFVITCVMAVSMDPLFFYIPVIDDQGKCLNLNGTLKITASVLRTFFDLFYIIRIVFQFRTGFIAPSSRIFGRGEPVDDPFAIAMRYLSSHFIIDILSILPLPQMVILAMIPIPQGSVPYITKDWLKYTIITQYAPRLMRIYTLFNEVTSTSGILTETAWAGAAYNLFLYMLASHVVGAFWYLFSIESELRCWRRRLKNTPFFDDSYLSCGRLNSTLFSILNNSTTCPYKDPDDIIGPTVFNFGIFIDALTSRVVELNTNFHHKFFYCFWWGLRNLRFDDDIWTEIAKFLDGKSLIMLAETNRWFRRTIMDDAIWKFVCLRDLQVPSPPPVAFKWSKLYTSAFDGSHSYKFRQQDKHIDWMRIGAFSFESSVALLTDRLNFPGELKKEESMETMLKTHGCCFLDNIKPGIWIADLQLVRCPVCDLNTCDGTMQTLDARHIELFLCEDYENGNWDYEVVGSHDIKKRAVGAAGSIFDVKHLASSSTSAVFDYKSWIGKDNDWQPKAMIAFHGVAVNTNLQENEG*