AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0792350

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0792350 MtrunA17_Chr8g0347121 94.376 729 29 2 1 718 1 728 0.0 1388
Msa0792350 MtrunA17_Chr7g0275581 61.265 759 212 9 1 718 1 718 0.0 904
Msa0792350 MtrunA17_Chr3g0126541 56.539 757 246 12 1 718 1 713 0.0 816
Msa0792350 MtrunA17_Chr1g0158861 55.348 748 255 12 4 713 5 711 0.0 790
Msa0792350 MtrunA17_Chr4g0073941 48.353 668 290 9 60 713 99 725 0.0 632
Msa0792350 MtrunA17_Chr2g0326871 46.696 681 303 9 48 713 65 700 0.0 606
Msa0792350 MtrunA17_Chr2g0305771 46.552 696 292 14 57 718 40 689 0.0 603
Msa0792350 MtrunA17_Chr4g0001481 45.655 725 323 13 15 713 57 736 0.0 593
Msa0792350 MtrunA17_Chr4g0028861 46.235 664 292 12 1 645 66 683 0.0 591
Msa0792350 MtrunA17_Chr7g0228181 43.521 710 325 13 33 713 15 677 0.0 577
Msa0792350 MtrunA17_Chr3g0139071 43.579 693 306 10 60 713 73 719 0.0 573
Msa0792350 MtrunA17_Chr3g0125651 43.966 696 307 13 60 715 36 688 0.0 565
Msa0792350 MtrunA17_Chr1g0181121 43.018 709 334 14 34 713 11 678 0.0 563
Msa0792350 MtrunA17_Chr6g0481021 35.897 624 326 16 59 654 122 699 1.12e-113 358
Msa0792350 MtrunA17_Chr6g0480671 34.628 618 316 13 60 644 193 755 3.01e-107 343
Msa0792350 MtrunA17_Chr6g0480851 32.132 638 348 14 59 669 183 762 3.41e-103 333
Msa0792350 MtrunA17_Chr8g0360821 32.795 619 330 15 59 643 61 627 1.51e-100 323
Msa0792350 MtrunA17_Chr6g0480781 33.014 627 361 18 59 647 168 773 1.61e-96 315
Msa0792350 MtrunA17_Chr7g0218341 31.854 631 353 14 44 643 91 675 5.90e-89 293
Msa0792350 MtrunA17_Chr6g0480741 31.250 592 350 13 60 618 115 682 4.11e-85 283
Msa0792350 MtrunA17_Chr6g0480681 28.179 692 371 18 59 689 114 740 1.73e-73 253
Msa0792350 MtrunA17_Chr2g0318561 32.383 491 267 13 176 643 2 450 2.51e-70 238
Msa0792350 MtrunA17_Chr5g0395421 34.483 319 174 7 294 587 45 353 2.20e-47 172
Msa0792350 MtrunA17_Chr2g0326861 42.289 201 96 4 135 326 14 203 1.55e-40 148
Msa0792350 MtrunA17_Chr5g0395411 35.648 216 121 5 59 270 171 372 3.59e-38 146
Msa0792350 MtrunA17_Chr6g0480771 29.496 278 142 7 377 642 18 253 5.80e-26 108
Msa0792350 MtrunA17_Chr6g0480841 37.714 175 90 4 425 587 2 169 6.84e-26 106
Msa0792350 MtrunA17_Chr6g0480751 36.220 127 76 1 56 177 89 215 6.05e-22 95.5
Msa0792350 MtrunA17_Chr6g0480791 35.115 131 82 2 55 182 165 295 1.44e-21 95.9
Msa0792350 MtrunA17_Chr2g0326851 34.568 162 66 4 554 713 7 130 4.92e-18 81.3
Msa0792350 MtrunA17_Chr4g0063141 20.513 429 254 10 113 528 87 441 3.16e-16 83.2
Msa0792350 MtrunA17_Chr2g0318551 29.747 158 97 3 31 179 26 178 1.07e-15 77.0
Msa0792350 MtrunA17_Chr2g0277651 23.810 315 191 10 242 528 169 462 6.49e-12 69.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0792350 AT4G01010.1 57.123 737 230 11 9 713 9 691 0.0 816
Msa0792350 AT4G01010.2 57.123 737 230 11 9 713 9 691 0.0 816
Msa0792350 AT1G01340.2 58.000 700 238 8 32 713 42 703 0.0 804
Msa0792350 AT1G01340.1 58.000 700 238 8 32 713 37 698 0.0 804
Msa0792350 AT5G53130.1 56.649 752 247 12 1 713 1 712 0.0 804
Msa0792350 AT2G46430.1 50.996 753 276 13 1 713 2 701 0.0 719
Msa0792350 AT2G46430.2 50.996 753 276 13 1 713 2 701 0.0 719
Msa0792350 AT2G23980.9 48.148 702 300 11 41 718 86 747 0.0 664
Msa0792350 AT2G23980.10 48.148 702 300 11 41 718 86 747 0.0 664
Msa0792350 AT2G23980.1 48.148 702 300 11 41 718 86 747 0.0 664
Msa0792350 AT2G23980.4 48.148 702 300 11 41 718 86 747 0.0 664
Msa0792350 AT2G23980.5 48.148 702 300 11 41 718 86 747 0.0 664
Msa0792350 AT2G23980.6 48.148 702 300 11 41 718 59 720 0.0 663
Msa0792350 AT4G30560.1 49.777 673 271 12 60 713 103 727 0.0 659
Msa0792350 AT4G30560.4 49.777 673 271 12 60 713 103 727 0.0 659
Msa0792350 AT4G30560.5 49.777 673 271 12 60 713 77 701 0.0 658
Msa0792350 AT4G30560.2 49.777 673 271 12 60 713 77 701 0.0 658
Msa0792350 AT4G30560.3 49.777 673 271 12 60 713 77 701 0.0 658
Msa0792350 AT2G23980.3 46.759 725 299 12 41 718 86 770 0.0 650
Msa0792350 AT2G23980.2 46.759 725 299 12 41 718 86 770 0.0 650
Msa0792350 AT2G23980.8 46.759 725 299 12 41 718 86 770 0.0 650
Msa0792350 AT2G23980.7 46.759 725 299 12 41 718 86 770 0.0 650
Msa0792350 AT5G57940.1 46.235 757 320 13 1 713 1 714 0.0 644
Msa0792350 AT5G57940.2 46.235 757 320 13 1 713 1 714 0.0 644
Msa0792350 AT5G57940.3 49.254 670 281 9 60 713 81 707 0.0 642
Msa0792350 AT1G15990.1 45.278 773 319 16 1 713 7 735 0.0 637
Msa0792350 AT1G19780.1 48.116 690 280 10 60 713 97 744 0.0 634
Msa0792350 AT2G28260.1 46.715 685 285 13 48 716 58 678 0.0 592
Msa0792350 AT2G28260.2 46.715 685 285 13 48 716 18 638 0.0 592
Msa0792350 AT2G24610.1 44.950 703 292 13 57 713 69 722 0.0 588
Msa0792350 AT2G24610.2 43.869 734 304 14 39 713 53 737 0.0 587
Msa0792350 AT4G30360.1 44.286 700 300 15 59 718 70 719 0.0 566
Msa0792350 AT5G14870.1 42.472 704 325 11 57 717 37 703 0.0 561
Msa0792350 AT3G48010.1 42.270 705 318 14 57 713 41 704 0.0 557
Msa0792350 AT2G46440.1 47.276 624 274 10 68 676 37 620 0.0 532
Msa0792350 AT2G46450.4 43.051 662 307 11 68 713 37 644 2.17e-175 516
Msa0792350 AT2G46450.1 43.051 662 307 11 68 713 37 644 2.17e-175 516
Msa0792350 AT1G19780.2 47.038 574 226 10 176 713 2 533 6.77e-165 486
Msa0792350 AT2G46450.3 41.541 662 294 12 68 713 24 608 3.95e-163 484
Msa0792350 AT2G46450.2 41.541 662 294 12 68 713 37 621 5.61e-163 484
Msa0792350 AT2G46440.2 48.750 480 194 9 213 677 1 443 1.68e-136 409
Msa0792350 AT3G17700.1 33.111 601 334 11 59 637 191 745 3.13e-101 328
Msa0792350 AT3G17690.1 32.739 617 341 14 57 648 153 720 3.29e-101 327
Msa0792350 AT3G17700.2 34.898 490 293 7 59 536 191 666 3.47e-95 310
Msa0792350 AT3G17690.2 34.274 496 293 9 57 535 153 632 4.96e-93 303
Msa0792350 AT5G15410.2 32.119 604 345 11 60 637 112 676 4.82e-91 300
Msa0792350 AT5G15410.1 32.119 604 345 11 60 637 113 677 5.14e-91 300
Msa0792350 AT5G54250.2 31.751 611 349 14 60 643 79 648 1.74e-90 298
Msa0792350 AT5G54250.1 31.751 611 349 14 60 643 79 648 1.74e-90 298
Msa0792350 AT5G54250.4 31.751 611 349 14 60 643 79 648 1.74e-90 298
Msa0792350 AT5G54250.3 31.260 611 347 15 60 643 79 643 1.35e-85 284
Msa0792350 AT3G17690.3 30.563 373 233 7 57 412 153 516 6.44e-56 200

Find 132 sgRNAs with CRISPR-Local

Find 264 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTAATAAGACGTCGAAAT+TGG 0.155059 5_3:+3472954 None:intergenic
AACCAATCCTTTGTTATATA+TGG 0.163608 5_3:+3475018 None:intergenic
ATGTCTCTTCTCAGATCTTT+AGG 0.165544 5_3:+3473443 None:intergenic
GCCATCTTCATTGCTGTCTT+TGG 0.168736 5_3:-3474067 Msa0792350:CDS
AAAGATCCTGATGATATTAT+TGG 0.173184 5_3:-3474569 Msa0792350:CDS
CCTGTTGACTCATGATTTAT+AGG 0.181831 5_3:+3476387 None:intergenic
TTGTTAAGAAAGAGTGTTTA+AGG 0.183623 5_3:+3476954 None:intergenic
GGTGGGGTTTGCGCAATTTA+AGG 0.199611 5_3:-3474448 Msa0792350:intron
TCAATGTTCCATTCAAATTA+AGG 0.206765 5_3:+3475619 None:intergenic
CAACATGGATAAACAGTTAT+TGG 0.216957 5_3:-3473290 Msa0792350:CDS
ATAAATTCTTCTACTGCTTT+TGG 0.244483 5_3:-3474469 Msa0792350:CDS
AAGACCTCCAACACACTTTC+AGG 0.252666 5_3:-3472928 Msa0792350:CDS
CAATATAAGTGCTTGTCTTT+AGG 0.254034 5_3:+3474104 None:intergenic
ATTAGGTTGTTGGAGCATTT+TGG 0.256130 5_3:-3474736 Msa0792350:intron
TGTCTCTTCTCAGATCTTTA+GGG 0.276896 5_3:+3473444 None:intergenic
CTAAAGACAAGCACTTATAT+TGG 0.307924 5_3:-3474103 Msa0792350:CDS
CAATATGATTCTTCAATTGA+TGG 0.309646 5_3:-3475849 Msa0792350:CDS
TAAAGACAAGCACTTATATT+GGG 0.329170 5_3:-3474102 Msa0792350:CDS
TTCTGTCCAGATTTGAAGAT+TGG 0.337475 5_3:-3475902 Msa0792350:intron
CGCGGTTCATACAAGTAATA+TGG 0.339598 5_3:-3472481 Msa0792350:CDS
CTTCATTGCTGTCTTTGGAT+TGG 0.340867 5_3:-3474062 Msa0792350:intron
GGAACTGAGCCTTGTGGAAT+TGG 0.348268 5_3:+3475039 None:intergenic
TCAACTGTACTAGTCGAAAT+AGG 0.351889 5_3:+3473037 None:intergenic
ACAGGGATGTAAAAGAATAA+TGG 0.368359 5_3:+3475663 None:intergenic
ATGTGTGATGGCAGTATCTA+TGG 0.374144 5_3:-3475688 Msa0792350:CDS
AAGTAATATGGCGTCGATAC+AGG 0.377837 5_3:-3472469 Msa0792350:CDS
ATCGTCTTTCAGTTTCGAAC+CGG 0.379722 5_3:-3475543 Msa0792350:CDS
TAGAATCAGAGTTGCGTTGT+TGG 0.383396 5_3:-3474700 Msa0792350:CDS
GGAAAATGCCTTAATTTGAA+TGG 0.384868 5_3:-3475627 Msa0792350:CDS
GGTAAGTTTGAAGAGGTTGT+AGG 0.390125 5_3:+3473058 None:intergenic
GTTAATAAGACGTCGAAATT+GGG 0.397762 5_3:+3472955 None:intergenic
CTCTCTACTTTGGTTCCTAT+AGG 0.399678 5_3:-3476883 Msa0792350:intron
ATCAATTCTTCCACTTCCTC+AGG 0.406342 5_3:-3475415 Msa0792350:intron
CATCCCTGTGATTGATGACC+AGG 0.414426 5_3:-3475649 Msa0792350:CDS
AACTCTTCTTCTCTCTACTT+TGG 0.416661 5_3:-3476893 Msa0792350:five_prime_UTR
TATTTGTGATATTAGGTTGT+TGG 0.424525 5_3:-3474746 Msa0792350:intron
AAGGTCCACTACTTCAGAAA+TGG 0.424933 5_3:-3475731 Msa0792350:CDS
ACAACAAATGGTGGAAGAAC+TGG 0.427072 5_3:-3473151 Msa0792350:CDS
CCTATAAATCATGAGTCAAC+AGG 0.429084 5_3:-3476387 Msa0792350:exon
GGAGCTTCTAACATGGGCCT+TGG 0.434189 5_3:-3473083 Msa0792350:CDS
ATTCCAAAATTGAAAACTGT+TGG 0.436075 5_3:+3474545 None:intergenic
CTTAAGACCGCCACAACAAA+TGG 0.436296 5_3:-3473163 Msa0792350:CDS
TTCCAAAATTGAAAACTGTT+GGG 0.439910 5_3:+3474546 None:intergenic
AATGAAGTAACAAGCACTTC+TGG 0.448752 5_3:-3474937 Msa0792350:CDS
TATCTCATTGCTATAGCAAA+AGG 0.451371 5_3:+3475468 None:intergenic
AAATTGGGAAGCATTATCTA+AGG 0.467662 5_3:+3472883 None:intergenic
TCAGAAATTGTTACGTGAAA+CGG 0.470319 5_3:-3472435 Msa0792350:CDS
GACGGTATGAACAATACAAA+TGG 0.472315 5_3:-3473511 Msa0792350:CDS
GTATAGATTCGCATGAGTCT+TGG 0.472590 5_3:+3474967 None:intergenic
TTGAAGAGATGAGAATCAAA+AGG 0.475729 5_3:-3473595 Msa0792350:CDS
ATTCTTTGCTTCAAGTGATC+CGG 0.484052 5_3:+3473536 None:intergenic
ATTCCTTGCAATGGAGGACA+TGG 0.488633 5_3:-3472508 Msa0792350:CDS
ATGAAGAGCATTTCGTCCAC+TGG 0.491546 5_3:+3473199 None:intergenic
TTGTTCCATTTCTGAAGTAG+TGG 0.494112 5_3:+3475726 None:intergenic
TTCCATATATAACAAAGGAT+TGG 0.506157 5_3:-3475020 Msa0792350:CDS
TCGTCTTTCAGTTTCGAACC+GGG 0.507612 5_3:-3475542 Msa0792350:CDS
ACAAAATGCTTCTGAAAATG+AGG 0.510501 5_3:-3472402 Msa0792350:CDS
GTTGGGCCAATAATATCATC+AGG 0.511144 5_3:+3474563 None:intergenic
AACTGGTTTCTTTAACTCGA+CGG 0.515613 5_3:-3473134 Msa0792350:CDS
ATAGCAAAAGGATCATCAAC+CGG 0.516589 5_3:+3475480 None:intergenic
CGAAATAGGTAAGTTTGAAG+AGG 0.517146 5_3:+3473051 None:intergenic
TATTCTGATACCTGAGGAAG+TGG 0.517630 5_3:+3475405 None:intergenic
GAGTCGTCCGCAGCTCAGAT+AGG 0.517792 5_3:+3474640 None:intergenic
TTTCCCTGGTCATCAATCAC+AGG 0.520770 5_3:+3475645 None:intergenic
TTAACTGAGACAGCATGGGC+TGG 0.523523 5_3:-3474910 Msa0792350:CDS
CTTGCCTGAAAGTGTGTTGG+AGG 0.524951 5_3:+3472924 None:intergenic
TCCAAAGACAGCAATGAAGA+TGG 0.529263 5_3:+3474066 None:intergenic
ATATCATCAGGATCTTTGTA+AGG 0.531313 5_3:+3474575 None:intergenic
AAAAGTTTCGTTGTTTGTGA+AGG 0.533061 5_3:-3473226 Msa0792350:CDS
GTAATGAAATCTGGCTCAGT+TGG 0.533564 5_3:+3472248 None:intergenic
AGTAATATGGCGTCGATACA+GGG 0.535014 5_3:-3472468 Msa0792350:CDS
TGCTCTAACGTCTCGTGTGG+TGG 0.535752 5_3:-3474513 Msa0792350:CDS
CTCTTCTCAGATCTTTAGGG+AGG 0.541922 5_3:+3473447 None:intergenic
TTCTGAAGTAGTGGACCTTG+TGG 0.543372 5_3:+3475735 None:intergenic
CTCTCATGCATGATGACTTG+AGG 0.543393 5_3:-3472988 Msa0792350:CDS
CTTTAACTCGACGGAACTCA+AGG 0.546626 5_3:-3473125 Msa0792350:CDS
GTTGGTTTCTGAGGTAAAAG+TGG 0.547114 5_3:+3472266 None:intergenic
AGATAGGAATCATCAAAGAA+TGG 0.547757 5_3:+3474656 None:intergenic
AAGAGATGAGAATCAAAAGG+AGG 0.548051 5_3:-3473592 Msa0792350:CDS
AGTTCTTCCACCATTTGTTG+TGG 0.548081 5_3:+3473153 None:intergenic
GGAAGAATGTCTAGTGATTG+TGG 0.549101 5_3:-3472021 Msa0792350:three_prime_UTR
GATGTGCCACCGTATGCTAC+CGG 0.552256 5_3:-3473555 Msa0792350:CDS
GAGTCTTCTTCACCAAGCAT+TGG 0.553818 5_3:-3472377 Msa0792350:CDS
GCATTAAAGCACTTGAGAAG+TGG 0.554111 5_3:-3472320 Msa0792350:CDS
CTCCAACACACTTTCAGGCA+AGG 0.557764 5_3:-3472923 Msa0792350:CDS
TCCTTGCAATGGAGGACATG+GGG 0.558163 5_3:-3472506 Msa0792350:CDS
TTTAACTATAGTAGTTGTGT+AGG 0.560518 5_3:-3472124 Msa0792350:three_prime_UTR
AGAGATGAGAATCAAAAGGA+GGG 0.561003 5_3:-3473591 Msa0792350:CDS
TGAAGAGGTTGTAGGATCCA+AGG 0.563224 5_3:+3473066 None:intergenic
TCTGGCTCAGTTGGTTTCTG+AGG 0.563292 5_3:+3472257 None:intergenic
TCAAGTGATCCGGTAGCATA+CGG 0.569335 5_3:+3473546 None:intergenic
AACTCGACGGAACTCAAGGC+TGG 0.573776 5_3:-3473121 Msa0792350:CDS
TTCCTTGCAATGGAGGACAT+GGG 0.577231 5_3:-3472507 Msa0792350:CDS
TCCCCATGTCCTCCATTGCA+AGG 0.577850 5_3:+3472505 None:intergenic
TATACAGTGGAACCAATGCT+TGG 0.578069 5_3:+3472365 None:intergenic
GTGGAGAGGAGCTTCTAACA+TGG 0.578654 5_3:-3473090 Msa0792350:CDS
GTTCCACTGTATATGTACAA+AGG 0.580611 5_3:-3472355 Msa0792350:CDS
TTAAACACTCTTTCTTAACA+AGG 0.586255 5_3:-3476952 Msa0792350:five_prime_UTR
TCTTCCACCATTTGTTGTGG+CGG 0.589608 5_3:+3473156 None:intergenic
CTCAGTTCCATATATAACAA+AGG 0.591567 5_3:-3475025 Msa0792350:CDS
AGAACACTACACCTAGAAGC+TGG 0.593927 5_3:+3475762 None:intergenic
ATATGTAAATGCAGAAAGTG+TGG 0.596893 5_3:-3472042 Msa0792350:three_prime_UTR
TTTACATTATTACTACCAGA+AGG 0.599938 5_3:-3471993 Msa0792350:three_prime_UTR
CTTCTAATACTCACACCACA+TGG 0.600109 5_3:-3476999 None:intergenic
AAAGGAGGGATGCAGAACAA+TGG 0.601963 5_3:-3473577 Msa0792350:CDS
GTATATTAACTGAGACAGCA+TGG 0.602058 5_3:-3474915 Msa0792350:CDS
AACAGGAAAAGAAATTTGTG+AGG 0.603171 5_3:-3476370 Msa0792350:intron
CGAAGAAGGTGCAATAAACC+CGG 0.603746 5_3:+3475524 None:intergenic
AGCCTTGCCTGAAAGTGTGT+TGG 0.604868 5_3:+3472921 None:intergenic
TGGAGAGGAGCTTCTAACAT+GGG 0.608318 5_3:-3473089 Msa0792350:CDS
TTCCCTGGTCATCAATCACA+GGG 0.611426 5_3:+3475646 None:intergenic
GATGATTCCTATCTGAGCTG+CGG 0.614958 5_3:-3474647 Msa0792350:CDS
TATATTAACTGAGACAGCAT+GGG 0.622764 5_3:-3474914 Msa0792350:CDS
AATGGAGGACATGGGGAGCG+CGG 0.630933 5_3:-3472499 Msa0792350:CDS
CTTTGTTATAACATGTGTGA+TGG 0.634441 5_3:-3475700 Msa0792350:CDS
AAAGACAAGCACTTATATTG+GGG 0.638169 5_3:-3474101 Msa0792350:CDS
AATGTGTGATAAACTGAAGC+CGG 0.650306 5_3:-3473263 Msa0792350:CDS
AATTTACATTATAAGAAACA+AGG 0.651404 5_3:-3472845 Msa0792350:CDS
ACTTGAAGCAAAGAATTCGA+CGG 0.656032 5_3:-3473529 Msa0792350:CDS
AAGACCGCCACAACAAATGG+TGG 0.660390 5_3:-3473160 Msa0792350:CDS
GCAATGATTCCAATTCCACA+AGG 0.673079 5_3:-3475048 Msa0792350:CDS
AGGCACAAATAACTAGCTAG+TGG 0.678658 5_3:-3472104 Msa0792350:three_prime_UTR
TGATGCTCTAACGTCTCGTG+TGG 0.679720 5_3:-3474516 Msa0792350:CDS
TGTTTGTGAAGGTGATCCAG+TGG 0.682601 5_3:-3473215 Msa0792350:CDS
ATCCCTGTGATTGATGACCA+GGG 0.686356 5_3:-3475648 Msa0792350:CDS
TACAAATGGCAAGAAAATCG+AGG 0.692084 5_3:-3473497 Msa0792350:CDS
GAAATGCTCTTCATCATGCG+CGG 0.701329 5_3:-3473190 Msa0792350:CDS
TGTAGTGTTCTTGATCCACA+AGG 0.708088 5_3:-3475750 Msa0792350:CDS
AAACCTTTGTACATATACAG+TGG 0.715371 5_3:+3472352 None:intergenic
ATATATGGAACTGAGCCTTG+TGG 0.739194 5_3:+3475033 None:intergenic
AGTGATCCGGTAGCATACGG+TGG 0.739209 5_3:+3473549 None:intergenic
GTTCACACATCACAACCATG+TGG 0.746904 5_3:+3476984 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATTAGTTAAAAAATATGT+AGG + chr5_3:3472151-3472170 None:intergenic 10.0%
!! TACAAAATAAATAATGAAAT+TGG - chr5_3:3472346-3472365 Msa0792350:CDS 10.0%
!! TTATTTAATTAAACTGAAAT+TGG + chr5_3:3473776-3473795 None:intergenic 10.0%
!!! TCAACATTTTAGATTTTAAA+AGG + chr5_3:3472744-3472763 None:intergenic 15.0%
!! TAAGTTACCAATATATTAAA+AGG - chr5_3:3473618-3473637 Msa0792350:CDS 15.0%
!! AATTTACATTATAAGAAACA+AGG - chr5_3:3476061-3476080 Msa0792350:intron 15.0%
!!! AGTATTTTTATTACTATATG+AGG - chr5_3:3476282-3476301 Msa0792350:intron 15.0%
!! CTAATTAATATTTCCTCTTA+TGG - chr5_3:3472164-3472183 Msa0792350:three_prime_UTR 20.0%
!!! GATTGACTTATTATTGTTAT+TGG - chr5_3:3472225-3472244 Msa0792350:exon 20.0%
!! AAATTGAAAAATAACCAACT+AGG + chr5_3:3472929-3472948 None:intergenic 20.0%
!!! AATGTTTCATTATTTTTTGC+TGG + chr5_3:3473117-3473136 None:intergenic 20.0%
!! AGCAAAAAATAATGAAACAT+TGG - chr5_3:3473116-3473135 Msa0792350:CDS 20.0%
!!! AAGTTCACCTTTTAATATAT+TGG + chr5_3:3473628-3473647 None:intergenic 20.0%
!! TCCAAATTATTTGTGATATT+AGG - chr5_3:3474153-3474172 Msa0792350:intron 20.0%
!! ACCTAATATCACAAATAATT+TGG + chr5_3:3474157-3474176 None:intergenic 20.0%
!! TAAGAACTTATACAAATGTT+TGG + chr5_3:3474629-3474648 None:intergenic 20.0%
!!! ATATCTTGTTTACTTAAGTA+AGG + chr5_3:3475106-3475125 None:intergenic 20.0%
!!! TTTTCTACAAAAACGAAATT+GGG + chr5_3:3476041-3476060 None:intergenic 20.0%
!!! TTTTTCTACAAAAACGAAAT+TGG + chr5_3:3476042-3476061 None:intergenic 20.0%
!!! TTCATACTTTTCTATGTTAT+CGG + chr5_3:3476184-3476203 None:intergenic 20.0%
!! AAAATAGAAGAAAGACAATA+TGG - chr5_3:3476337-3476356 Msa0792350:intron 20.0%
!!! TTTTTTTGAGTAATGAAATC+TGG + chr5_3:3476670-3476689 None:intergenic 20.0%
!!! TTGTTAAGAAAGAGTGTTTA+AGG + chr5_3:3471955-3471974 None:intergenic 25.0%
! TTAAACACTCTTTCTTAACA+AGG - chr5_3:3471954-3471973 Msa0792350:three_prime_UTR 25.0%
! TCACACATAACTAGAAAAAA+AGG + chr5_3:3472423-3472442 None:intergenic 25.0%
!! CAAAAATTCTGATTTGAAGA+TGG - chr5_3:3472446-3472465 Msa0792350:CDS 25.0%
! TCAAAATCTGCACTAAAATA+TGG + chr5_3:3472719-3472738 None:intergenic 25.0%
! CAATATGATTCTTCAATTGA+TGG - chr5_3:3473057-3473076 Msa0792350:CDS 25.0%
! TCAATGTTCCATTCAAATTA+AGG + chr5_3:3473290-3473309 None:intergenic 25.0%
! CTTTATTCAAGCATATTCTA+AGG - chr5_3:3473533-3473552 Msa0792350:CDS 25.0%
! TTCCATATATAACAAAGGAT+TGG - chr5_3:3473886-3473905 Msa0792350:intron 25.0%
!! AACCAATCCTTTGTTATATA+TGG + chr5_3:3473891-3473910 None:intergenic 25.0%
! AAAACTTAGCTTAGTAAACA+AGG + chr5_3:3474113-3474132 None:intergenic 25.0%
!! TATTTGTGATATTAGGTTGT+TGG - chr5_3:3474160-3474179 Msa0792350:intron 25.0%
! AAAGATCCTGATGATATTAT+TGG - chr5_3:3474337-3474356 Msa0792350:intron 25.0%
! TTCCAAAATTGAAAACTGTT+GGG + chr5_3:3474363-3474382 None:intergenic 25.0%
! ATTCCAAAATTGAAAACTGT+TGG + chr5_3:3474364-3474383 None:intergenic 25.0%
!! ATAAATTCTTCTACTGCTTT+TGG - chr5_3:3474437-3474456 Msa0792350:intron 25.0%
! AAACACTGCAAATAAAGTTA+AGG + chr5_3:3474676-3474695 None:intergenic 25.0%
! ATAAGATGTCACAAAAATAG+TGG + chr5_3:3474710-3474729 None:intergenic 25.0%
!! ATTTTTGTGACATCTTATCA+AGG - chr5_3:3474712-3474731 Msa0792350:CDS 25.0%
! TAAAGACAAGCACTTATATT+GGG - chr5_3:3474804-3474823 Msa0792350:intron 25.0%
! GTTCTATTTGCATTACTTAT+AGG - chr5_3:3474866-3474885 Msa0792350:intron 25.0%
!!! ATAAGCTTTGAAAAAAGTCT+TGG + chr5_3:3475026-3475045 None:intergenic 25.0%
!! TCGCTATCAAAAAACATTTT+AGG - chr5_3:3475068-3475087 Msa0792350:intron 25.0%
! ATCATGAATCATTTATCTGT+TGG - chr5_3:3475197-3475216 Msa0792350:intron 25.0%
! TCTGATGAAGTAAAGATTAT+AGG - chr5_3:3475236-3475255 Msa0792350:intron 25.0%
!! TAGTACTTTCATCTTTTACT+TGG - chr5_3:3475533-3475552 Msa0792350:CDS 25.0%
! TGTAAACAAGTATAGTTAAG+TGG + chr5_3:3475571-3475590 None:intergenic 25.0%
! TTATCCATGTTGCTAAAAAT+TGG + chr5_3:3475608-3475627 None:intergenic 25.0%
! TCATCTAAAAATTTCACCTT+TGG - chr5_3:3476097-3476116 Msa0792350:intron 25.0%
! TAAAAATTTCACCTTTGGAT+TGG - chr5_3:3476102-3476121 Msa0792350:intron 25.0%
!! ACAATAGTAATTTTCGAAAC+TGG + chr5_3:3476250-3476269 None:intergenic 25.0%
! CGAAAATTACTATTGTATTG+TGG - chr5_3:3476254-3476273 Msa0792350:intron 25.0%
! TTTAACTATAGTAGTTGTGT+AGG - chr5_3:3476782-3476801 Msa0792350:intron 25.0%
! TTTACATTATTACTACCAGA+AGG - chr5_3:3476913-3476932 Msa0792350:five_prime_UTR 25.0%
! TTTTCTGTTACCTTACCTAT+AGG + chr5_3:3472041-3472060 None:intergenic 30.0%
ATAGGTAAGGTAACAGAAAA+AGG - chr5_3:3472041-3472060 Msa0792350:three_prime_UTR 30.0%
TTTATCAAAACCAACCTTGA+TGG - chr5_3:3472071-3472090 Msa0792350:three_prime_UTR 30.0%
GAAAAACAGTAAAACCATCA+AGG + chr5_3:3472088-3472107 None:intergenic 30.0%
GATAAGTGTGAAATAGTAGA+GGG + chr5_3:3472116-3472135 None:intergenic 30.0%
AGATAAGTGTGAAATAGTAG+AGG + chr5_3:3472117-3472136 None:intergenic 30.0%
!! ATTTGAAGATGGATTTTGCA+GGG - chr5_3:3472457-3472476 Msa0792350:CDS 30.0%
AACAGGAAAAGAAATTTGTG+AGG - chr5_3:3472536-3472555 Msa0792350:intron 30.0%
GTGAAATCCGAATTTGTATA+GGG + chr5_3:3472629-3472648 None:intergenic 30.0%
AGAGACTAAGCATAAATCTT+TGG - chr5_3:3472899-3472918 Msa0792350:CDS 30.0%
!!! AAATCTTTGGTTTTCCTAGT+TGG - chr5_3:3472912-3472931 Msa0792350:CDS 30.0%
! CTTTGTTATAACATGTGTGA+TGG - chr5_3:3473206-3473225 Msa0792350:CDS 30.0%
ACAGGGATGTAAAAGAATAA+TGG + chr5_3:3473246-3473265 None:intergenic 30.0%
! GGAAAATGCCTTAATTTGAA+TGG - chr5_3:3473279-3473298 Msa0792350:CDS 30.0%
TATCTCATTGCTATAGCAAA+AGG + chr5_3:3473441-3473460 None:intergenic 30.0%
! ATATTCTAAGGAGTTCACTA+AGG - chr5_3:3473545-3473564 Msa0792350:CDS 30.0%
TTAACTAATGCTCTTAAGCA+TGG - chr5_3:3473704-3473723 Msa0792350:intron 30.0%
CTCAGTTCCATATATAACAA+AGG - chr5_3:3473881-3473900 Msa0792350:intron 30.0%
TATATTAACTGAGACAGCAT+GGG - chr5_3:3473992-3474011 Msa0792350:intron 30.0%
AGATAGGAATCATCAAAGAA+TGG + chr5_3:3474253-3474272 None:intergenic 30.0%
ATATCATCAGGATCTTTGTA+AGG + chr5_3:3474334-3474353 None:intergenic 30.0%
GTTAACTCTATAAGAACACA+AGG + chr5_3:3474521-3474540 None:intergenic 30.0%
GAACTTATACAAATGTTTGG+AGG + chr5_3:3474626-3474645 None:intergenic 30.0%
!! CTTTATTTGCAGTGTTTTGA+TGG - chr5_3:3474679-3474698 Msa0792350:CDS 30.0%
!!! TTGTTTTTTGCAGTTCTGTT+GGG - chr5_3:3474774-3474793 Msa0792350:intron 30.0%
CAATATAAGTGCTTGTCTTT+AGG + chr5_3:3474805-3474824 None:intergenic 30.0%
CTAAAGACAAGCACTTATAT+TGG - chr5_3:3474803-3474822 Msa0792350:intron 30.0%
AAAGACAAGCACTTATATTG+GGG - chr5_3:3474805-3474824 Msa0792350:intron 30.0%
ATTACTTATAGGAAACATGC+AGG - chr5_3:3474877-3474896 Msa0792350:CDS 30.0%
AGTACACTATATATGTGACT+AGG + chr5_3:3475175-3475194 None:intergenic 30.0%
TTGAAGAGATGAGAATCAAA+AGG - chr5_3:3475311-3475330 Msa0792350:intron 30.0%
ACTTGTTTACATGTGATGAT+AGG - chr5_3:3475580-3475599 Msa0792350:CDS 30.0%
CAACATGGATAAACAGTTAT+TGG - chr5_3:3475616-3475635 Msa0792350:CDS 30.0%
! ACAAACAACGAAACTTTTCT+CGG + chr5_3:3475678-3475697 None:intergenic 30.0%
AAAAGTTTCGTTGTTTGTGA+AGG - chr5_3:3475680-3475699 Msa0792350:CDS 30.0%
GTTAATAAGACGTCGAAATT+GGG + chr5_3:3475954-3475973 None:intergenic 30.0%
TGTTAATAAGACGTCGAAAT+TGG + chr5_3:3475955-3475974 None:intergenic 30.0%
!! AAATTGGGAAGCATTATCTA+AGG + chr5_3:3476026-3476045 None:intergenic 30.0%
! TTCGAAACTGGTTTATATTG+CGG + chr5_3:3476238-3476257 None:intergenic 30.0%
TCATCCTAATATCTTTACCA+TGG + chr5_3:3476318-3476337 None:intergenic 30.0%
TCAGAAATTGTTACGTGAAA+CGG - chr5_3:3476471-3476490 Msa0792350:intron 30.0%
! ACAAAATGCTTCTGAAAATG+AGG - chr5_3:3476504-3476523 Msa0792350:intron 30.0%
AAACCTTTGTACATATACAG+TGG + chr5_3:3476557-3476576 None:intergenic 30.0%
ATATGTAAATGCAGAAAGTG+TGG - chr5_3:3476864-3476883 Msa0792350:intron 30.0%
TCAATGAGTGCACAAAAAAT+TGG + chr5_3:3476939-3476958 None:intergenic 30.0%
!!! ATTTTTTGTGCACTCATTGA+TGG - chr5_3:3476939-3476958 Msa0792350:five_prime_UTR 30.0%
AACTCTTCTTCTCTCTACTT+TGG - chr5_3:3472013-3472032 Msa0792350:three_prime_UTR 35.0%
! TACTTTGGTTCCTATAGGTA+AGG - chr5_3:3472028-3472047 Msa0792350:three_prime_UTR 35.0%
AACAGTAAAACCATCAAGGT+TGG + chr5_3:3472084-3472103 None:intergenic 35.0%
TCCTCTTATGGTTCATATGA+AGG - chr5_3:3472176-3472195 Msa0792350:three_prime_UTR 35.0%
!! GATTTGAAGATGGATTTTGC+AGG - chr5_3:3472456-3472475 Msa0792350:CDS 35.0%
!! CCTGTTGACTCATGATTTAT+AGG + chr5_3:3472522-3472541 None:intergenic 35.0%
CCTATAAATCATGAGTCAAC+AGG - chr5_3:3472519-3472538 Msa0792350:intron 35.0%
TATAGGGCAACTGAAACAAT+AGG + chr5_3:3472613-3472632 None:intergenic 35.0%
TCAGTTGCCCTATACAAATT+CGG - chr5_3:3472619-3472638 Msa0792350:intron 35.0%
CGTGAAATCCGAATTTGTAT+AGG + chr5_3:3472630-3472649 None:intergenic 35.0%
ACTACGTGAATTAGTGCAAT+CGG + chr5_3:3472659-3472678 None:intergenic 35.0%
TTGTGAATTTGGATTCCTTG+CGG + chr5_3:3472846-3472865 None:intergenic 35.0%
! GTACTGCTAACTTGTGAATT+TGG + chr5_3:3472857-3472876 None:intergenic 35.0%
TTCTGTCCAGATTTGAAGAT+TGG - chr5_3:3473004-3473023 Msa0792350:CDS 35.0%
TGACTTCCAATCTTCAAATC+TGG + chr5_3:3473013-3473032 None:intergenic 35.0%
!!! TTTTTTGCTGGAGTAACACT+TGG + chr5_3:3473105-3473124 None:intergenic 35.0%
!! TTGTTCCATTTCTGAAGTAG+TGG + chr5_3:3473183-3473202 None:intergenic 35.0%
!! TCAAATTAAGGCATTTTCCC+TGG + chr5_3:3473278-3473297 None:intergenic 35.0%
ATAGCAAAAGGATCATCAAC+CGG + chr5_3:3473429-3473448 None:intergenic 35.0%
! CGTAATGATGTGTTGATAGA+TGG - chr5_3:3473827-3473846 Msa0792350:intron 35.0%
AATGAAGTAACAAGCACTTC+TGG - chr5_3:3473969-3473988 Msa0792350:intron 35.0%
GTATATTAACTGAGACAGCA+TGG - chr5_3:3473991-3474010 Msa0792350:intron 35.0%
!! ATTAGGTTGTTGGAGCATTT+TGG - chr5_3:3474170-3474189 Msa0792350:intron 35.0%
!! AATTCTTCTACTGCTTTTGG+TGG - chr5_3:3474440-3474459 Msa0792350:intron 35.0%
!! ATTCTTCTACTGCTTTTGGT+GGG - chr5_3:3474441-3474460 Msa0792350:intron 35.0%
!!! GTTGTTTTTTGCAGTTCTGT+TGG - chr5_3:3474773-3474792 Msa0792350:intron 35.0%
! ATAAGTCAGACTGACTTACA+AGG - chr5_3:3474939-3474958 Msa0792350:CDS 35.0%
! TAAGTCAGACTGACTTACAA+GGG - chr5_3:3474940-3474959 Msa0792350:CDS 35.0%
ACATGTGTCTGATATAGACT+AGG + chr5_3:3474973-3474992 None:intergenic 35.0%
! CTTTGAAAAAAGTCTTGGCT+TGG + chr5_3:3475021-3475040 None:intergenic 35.0%
CTTAAGTAAGGTGACTTGAT+AGG + chr5_3:3475094-3475113 None:intergenic 35.0%
AAGAGATGAGAATCAAAAGG+AGG - chr5_3:3475314-3475333 Msa0792350:intron 35.0%
AGAGATGAGAATCAAAAGGA+GGG - chr5_3:3475315-3475334 Msa0792350:intron 35.0%
ATTCTTTGCTTCAAGTGATC+CGG + chr5_3:3475373-3475392 None:intergenic 35.0%
ACTTGAAGCAAAGAATTCGA+CGG - chr5_3:3475377-3475396 Msa0792350:intron 35.0%
GACGGTATGAACAATACAAA+TGG - chr5_3:3475395-3475414 Msa0792350:intron 35.0%
TACAAATGGCAAGAAAATCG+AGG - chr5_3:3475409-3475428 Msa0792350:intron 35.0%
TGTCTCTTCTCAGATCTTTA+GGG + chr5_3:3475465-3475484 None:intergenic 35.0%
ATGTCTCTTCTCAGATCTTT+AGG + chr5_3:3475466-3475485 None:intergenic 35.0%
AATGTGTGATAAACTGAAGC+CGG - chr5_3:3475643-3475662 Msa0792350:CDS 35.0%
! CGAAACTTTTCTCGGTATAA+AGG + chr5_3:3475670-3475689 None:intergenic 35.0%
! AACTGGTTTCTTTAACTCGA+CGG - chr5_3:3475772-3475791 Msa0792350:CDS 35.0%
CGAAATAGGTAAGTTTGAAG+AGG + chr5_3:3475858-3475877 None:intergenic 35.0%
TCAACTGTACTAGTCGAAAT+AGG + chr5_3:3475872-3475891 None:intergenic 35.0%
!! GTTTTAATCAGTTATGCCTC+CGG + chr5_3:3476130-3476149 None:intergenic 35.0%
GAGACCATGGTAAAGATATT+AGG - chr5_3:3476311-3476330 Msa0792350:intron 35.0%
CTCAAACATTGTCATCAATG+AGG + chr5_3:3476370-3476389 None:intergenic 35.0%
! ATTGATGACAATGTTTGAGC+AGG - chr5_3:3476371-3476390 Msa0792350:CDS 35.0%
TGTTACGTGAAACGGAAAAA+AGG - chr5_3:3476479-3476498 Msa0792350:intron 35.0%
GTTCCACTGTATATGTACAA+AGG - chr5_3:3476551-3476570 Msa0792350:intron 35.0%
! CTCTCTACTTTGGTTCCTAT+AGG - chr5_3:3472023-3472042 Msa0792350:three_prime_UTR 40.0%
GCCTTCATATGAACCATAAG+AGG + chr5_3:3472180-3472199 None:intergenic 40.0%
!! ATCCTTCTCTCAGGTTGATA+TGG - chr5_3:3472201-3472220 Msa0792350:three_prime_UTR 40.0%
GTATGACTATTAGTGCTGCA+TGG + chr5_3:3472387-3472406 None:intergenic 40.0%
AATTCACGTAGTCAGCACAT+CGG - chr5_3:3472667-3472686 Msa0792350:intron 40.0%
ACCAACTGATCTCTATCCAA+AGG - chr5_3:3472777-3472796 Msa0792350:intron 40.0%
ACCTTTGGATAGAGATCAGT+TGG + chr5_3:3472781-3472800 None:intergenic 40.0%
CATTGGAAAAACCAGCTTCT+AGG - chr5_3:3473133-3473152 Msa0792350:CDS 40.0%
TGTAGTGTTCTTGATCCACA+AGG - chr5_3:3473156-3473175 Msa0792350:CDS 40.0%
AAGGTCCACTACTTCAGAAA+TGG - chr5_3:3473175-3473194 Msa0792350:CDS 40.0%
ATGTGTGATGGCAGTATCTA+TGG - chr5_3:3473218-3473237 Msa0792350:CDS 40.0%
ATCGTCTTTCAGTTTCGAAC+CGG - chr5_3:3473363-3473382 Msa0792350:intron 40.0%
!! TTCTTCGCGCATTTTTGGAA+GGG - chr5_3:3473398-3473417 Msa0792350:intron 40.0%
ATCAATTCTTCCACTTCCTC+AGG - chr5_3:3473491-3473510 Msa0792350:CDS 40.0%
TATTCTGATACCTGAGGAAG+TGG + chr5_3:3473504-3473523 None:intergenic 40.0%
GTACTGTATTCTGATACCTG+AGG + chr5_3:3473510-3473529 None:intergenic 40.0%
AGCATGGTTAACAGTATCGT+AGG - chr5_3:3473720-3473739 Msa0792350:intron 40.0%
GCAATGATTCCAATTCCACA+AGG - chr5_3:3473858-3473877 Msa0792350:intron 40.0%
ATATATGGAACTGAGCCTTG+TGG + chr5_3:3473876-3473895 None:intergenic 40.0%
GTATAGATTCGCATGAGTCT+TGG + chr5_3:3473942-3473961 None:intergenic 40.0%
TAGAATCAGAGTTGCGTTGT+TGG - chr5_3:3474206-3474225 Msa0792350:intron 40.0%
GTTGGGCCAATAATATCATC+AGG + chr5_3:3474346-3474365 None:intergenic 40.0%
! GGCCCAACAGTTTTCAATTT+TGG - chr5_3:3474358-3474377 Msa0792350:intron 40.0%
!! TTCTTCTACTGCTTTTGGTG+GGG - chr5_3:3474442-3474461 Msa0792350:intron 40.0%
TCCAAAGACAGCAATGAAGA+TGG + chr5_3:3474843-3474862 None:intergenic 40.0%
CTTCATTGCTGTCTTTGGAT+TGG - chr5_3:3474844-3474863 Msa0792350:intron 40.0%
CATGCAGGTAATCCTTAGTA+AGG - chr5_3:3474892-3474911 Msa0792350:CDS 40.0%
CAGGTAATCCTTAGTAAGGA+AGG - chr5_3:3474896-3474915 Msa0792350:CDS 40.0%
TCTGATATAGACTAGGTCGT+AGG + chr5_3:3474966-3474985 None:intergenic 40.0%
!!! GGTGCCAATTTTTAGCAACA+TGG - chr5_3:3475601-3475620 Msa0792350:CDS 40.0%
! CTTTTCTCGGTATAAAGGAC+CGG + chr5_3:3475665-3475684 None:intergenic 40.0%
! AGTTCTTCCACCATTTGTTG+TGG + chr5_3:3475756-3475775 None:intergenic 40.0%
! ACAACAAATGGTGGAAGAAC+TGG - chr5_3:3475755-3475774 Msa0792350:CDS 40.0%
GGTAAGTTTGAAGAGGTTGT+AGG + chr5_3:3475851-3475870 None:intergenic 40.0%
TATGAGGAAATGTGAGACCA+TGG - chr5_3:3476298-3476317 Msa0792350:intron 40.0%
!!! GCAGGTTTTATTCCTTGCAA+TGG - chr5_3:3476389-3476408 Msa0792350:exon 40.0%
!!! GGTTTTATTCCTTGCAATGG+AGG - chr5_3:3476392-3476411 Msa0792350:exon 40.0%
CGCGGTTCATACAAGTAATA+TGG - chr5_3:3476425-3476444 Msa0792350:five_prime_UTR 40.0%
!! AAGTAATATGGCGTCGATAC+AGG - chr5_3:3476437-3476456 Msa0792350:five_prime_UTR 40.0%
!! AGTAATATGGCGTCGATACA+GGG - chr5_3:3476438-3476457 Msa0792350:five_prime_UTR 40.0%
TATACAGTGGAACCAATGCT+TGG + chr5_3:3476544-3476563 None:intergenic 40.0%
! GCATTAAAGCACTTGAGAAG+TGG - chr5_3:3476586-3476605 Msa0792350:intron 40.0%
!! GTTGGTTTCTGAGGTAAAAG+TGG + chr5_3:3476643-3476662 None:intergenic 40.0%
! GTAATGAAATCTGGCTCAGT+TGG + chr5_3:3476661-3476680 None:intergenic 40.0%
AGGCACAAATAACTAGCTAG+TGG - chr5_3:3476802-3476821 Msa0792350:intron 40.0%
GGAAGAATGTCTAGTGATTG+TGG - chr5_3:3476885-3476904 Msa0792350:five_prime_UTR 40.0%
!! TGCACAAAAAATTGGCCTTC+TGG + chr5_3:3476931-3476950 None:intergenic 40.0%
GTTCACACATCACAACCATG+TGG + chr5_3:3471925-3471944 None:intergenic 45.0%
ATGAAGGCAATCCTTCTCTC+AGG - chr5_3:3472192-3472211 Msa0792350:three_prime_UTR 45.0%
CTCCATATCAACCTGAGAGA+AGG + chr5_3:3472206-3472225 None:intergenic 45.0%
GTCGTTTGATCGAGATCGAA+CGG - chr5_3:3472692-3472711 Msa0792350:intron 45.0%
TAACACAGTCAGCAGCACAT+CGG + chr5_3:3472806-3472825 None:intergenic 45.0%
GTTAACAATCGATGACCGCA+AGG - chr5_3:3472828-3472847 Msa0792350:intron 45.0%
AGAACACTACACCTAGAAGC+TGG + chr5_3:3473147-3473166 None:intergenic 45.0%
!! TTCTGAAGTAGTGGACCTTG+TGG + chr5_3:3473174-3473193 None:intergenic 45.0%
! ATCCCTGTGATTGATGACCA+GGG - chr5_3:3473258-3473277 Msa0792350:CDS 45.0%
TTCCCTGGTCATCAATCACA+GGG + chr5_3:3473263-3473282 None:intergenic 45.0%
TTTCCCTGGTCATCAATCAC+AGG + chr5_3:3473264-3473283 None:intergenic 45.0%
TCGTCTTTCAGTTTCGAACC+GGG - chr5_3:3473364-3473383 Msa0792350:intron 45.0%
! CGAAGAAGGTGCAATAAACC+CGG + chr5_3:3473385-3473404 None:intergenic 45.0%
CTTCCAAAAATGCGCGAAGA+AGG + chr5_3:3473399-3473418 None:intergenic 45.0%
!! CTTCTTCGCGCATTTTTGGA+AGG - chr5_3:3473397-3473416 Msa0792350:intron 45.0%
!! TCTTCGCGCATTTTTGGAAG+GGG - chr5_3:3473399-3473418 Msa0792350:intron 45.0%
GATGATTCCTATCTGAGCTG+CGG - chr5_3:3474259-3474278 Msa0792350:intron 45.0%
! GGGTTTGCGCAATTTAAGGT+TGG - chr5_3:3474462-3474481 Msa0792350:CDS 45.0%
GTTCTTGATCTTCTCTGCGT+AGG - chr5_3:3474484-3474503 Msa0792350:CDS 45.0%
GCCATCTTCATTGCTGTCTT+TGG - chr5_3:3474839-3474858 Msa0792350:intron 45.0%
CTCAGAGTCCTTCCTTACTA+AGG + chr5_3:3474907-3474926 None:intergenic 45.0%
AAAGGAGGGATGCAGAACAA+TGG - chr5_3:3475329-3475348 Msa0792350:intron 45.0%
TCAAGTGATCCGGTAGCATA+CGG + chr5_3:3475363-3475382 None:intergenic 45.0%
! CTCTTCTCAGATCTTTAGGG+AGG + chr5_3:3475462-3475481 None:intergenic 45.0%
TGTTTGTGAAGGTGATCCAG+TGG - chr5_3:3475691-3475710 Msa0792350:CDS 45.0%
!! ATGAAGAGCATTTCGTCCAC+TGG + chr5_3:3475710-3475729 None:intergenic 45.0%
GAAATGCTCTTCATCATGCG+CGG - chr5_3:3475716-3475735 Msa0792350:CDS 45.0%
CTTAAGACCGCCACAACAAA+TGG - chr5_3:3475743-3475762 Msa0792350:CDS 45.0%
!! TCTTCCACCATTTGTTGTGG+CGG + chr5_3:3475753-3475772 None:intergenic 45.0%
CTTTAACTCGACGGAACTCA+AGG - chr5_3:3475781-3475800 Msa0792350:CDS 45.0%
! CTCAAGGCTGGTGATTTTTG+TGG - chr5_3:3475797-3475816 Msa0792350:CDS 45.0%
TGGAGAGGAGCTTCTAACAT+GGG - chr5_3:3475817-3475836 Msa0792350:CDS 45.0%
TGAAGAGGTTGTAGGATCCA+AGG + chr5_3:3475843-3475862 None:intergenic 45.0%
CTCTCATGCATGATGACTTG+AGG - chr5_3:3475918-3475937 Msa0792350:intron 45.0%
AAGACCTCCAACACACTTTC+AGG - chr5_3:3475978-3475997 Msa0792350:intron 45.0%
! TTTCACCTTTGGATTGGAGC+CGG - chr5_3:3476108-3476127 Msa0792350:intron 45.0%
ATTCCTTGCAATGGAGGACA+TGG - chr5_3:3476398-3476417 Msa0792350:exon 45.0%
! GCGTCGATACAGGGAAAAAA+GGG - chr5_3:3476447-3476466 Msa0792350:intron 45.0%
GAGTCTTCTTCACCAAGCAT+TGG - chr5_3:3476529-3476548 Msa0792350:intron 45.0%
!! AAAATGATAAAATATATAAT+TGG + chr5_3:3476214-3476233 None:intergenic 5.0%
! CATCCCTGTGATTGATGACC+AGG - chr5_3:3473257-3473276 Msa0792350:CDS 50.0%
! GCACCTTCTTCGCGCATTTT+TGG - chr5_3:3473393-3473412 Msa0792350:intron 50.0%
!! CATTTTTGGAAGGGGAGAGC+CGG - chr5_3:3473407-3473426 Msa0792350:intron 50.0%
! GGAACTGAGCCTTGTGGAAT+TGG + chr5_3:3473870-3473889 None:intergenic 50.0%
TTAACTGAGACAGCATGGGC+TGG - chr5_3:3473996-3474015 Msa0792350:intron 50.0%
TGATGCTCTAACGTCTCGTG+TGG - chr5_3:3474390-3474409 Msa0792350:intron 50.0%
GGTGGGGTTTGCGCAATTTA+AGG - chr5_3:3474458-3474477 Msa0792350:CDS 50.0%
AAGACCGCCACAACAAATGG+TGG - chr5_3:3475746-3475765 Msa0792350:CDS 50.0%
! GGCTGGTGATTTTTGTGGAG+AGG - chr5_3:3475802-3475821 Msa0792350:CDS 50.0%
GTGGAGAGGAGCTTCTAACA+TGG - chr5_3:3475816-3475835 Msa0792350:CDS 50.0%
! CTTGCCTGAAAGTGTGTTGG+AGG + chr5_3:3475985-3476004 None:intergenic 50.0%
CTCCAACACACTTTCAGGCA+AGG - chr5_3:3475983-3476002 Msa0792350:intron 50.0%
! AGCCTTGCCTGAAAGTGTGT+TGG + chr5_3:3475988-3476007 None:intergenic 50.0%
!! GGCGTCGATACAGGGAAAAA+AGG - chr5_3:3476446-3476465 Msa0792350:intron 50.0%
! TCTGGCTCAGTTGGTTTCTG+AGG + chr5_3:3476652-3476671 None:intergenic 50.0%
TCACGTAGTCAGCACATCGG+TGG - chr5_3:3472670-3472689 Msa0792350:intron 55.0%
AGCAGCACATCGGTGACCTT+TGG + chr5_3:3472796-3472815 None:intergenic 55.0%
TGCTCTAACGTCTCGTGTGG+TGG - chr5_3:3474393-3474412 Msa0792350:intron 55.0%
GATGTGCCACCGTATGCTAC+CGG - chr5_3:3475351-3475370 Msa0792350:intron 55.0%
AGTGATCCGGTAGCATACGG+TGG + chr5_3:3475360-3475379 None:intergenic 55.0%
AACTCGACGGAACTCAAGGC+TGG - chr5_3:3475785-3475804 Msa0792350:CDS 55.0%
GGAGCTTCTAACATGGGCCT+TGG - chr5_3:3475823-3475842 Msa0792350:CDS 55.0%
GAGTCGTCCGCAGCTCAGAT+AGG + chr5_3:3474269-3474288 None:intergenic 60.0%
! CACCTTTGGATTGGAGCCGG+AGG - chr5_3:3476111-3476130 Msa0792350:intron 60.0%
TGCCTCCGGCTCCAATCCAA+AGG + chr5_3:3476116-3476135 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 3471922 3477006 3471922 ID=Msa0792350;Name=Msa0792350
chr5_3 mRNA 3471922 3477006 3471922 ID=Msa0792350-mRNA-1;Parent=Msa0792350;Name=Msa0792350-mRNA-1;_AED=0.11;_eAED=0.11;_QI=184|0.75|0.77|1|0.87|0.77|9|313|718
chr5_3 exon 3471922 3472535 3471922 ID=Msa0792350-mRNA-1:exon:1563;Parent=Msa0792350-mRNA-1
chr5_3 exon 3472833 3473326 3472833 ID=Msa0792350-mRNA-1:exon:1562;Parent=Msa0792350-mRNA-1
chr5_3 exon 3473409 3473645 3473409 ID=Msa0792350-mRNA-1:exon:1561;Parent=Msa0792350-mRNA-1
chr5_3 exon 3474063 3474141 3474063 ID=Msa0792350-mRNA-1:exon:1560;Parent=Msa0792350-mRNA-1
chr5_3 exon 3474449 3474753 3474449 ID=Msa0792350-mRNA-1:exon:1559;Parent=Msa0792350-mRNA-1
chr5_3 exon 3474870 3475082 3474870 ID=Msa0792350-mRNA-1:exon:1558;Parent=Msa0792350-mRNA-1
chr5_3 exon 3475416 3475914 3475416 ID=Msa0792350-mRNA-1:exon:1557;Parent=Msa0792350-mRNA-1
chr5_3 exon 3476371 3476460 3476371 ID=Msa0792350-mRNA-1:exon:1556;Parent=Msa0792350-mRNA-1
chr5_3 exon 3476884 3477006 3476884 ID=Msa0792350-mRNA-1:exon:1555;Parent=Msa0792350-mRNA-1
chr5_3 five_prime_UTR 3476884 3477006 3476884 ID=Msa0792350-mRNA-1:five_prime_utr;Parent=Msa0792350-mRNA-1
chr5_3 five_prime_UTR 3476400 3476460 3476400 ID=Msa0792350-mRNA-1:five_prime_utr;Parent=Msa0792350-mRNA-1
chr5_3 CDS 3476371 3476399 3476371 ID=Msa0792350-mRNA-1:cds;Parent=Msa0792350-mRNA-1
chr5_3 CDS 3475416 3475914 3475416 ID=Msa0792350-mRNA-1:cds;Parent=Msa0792350-mRNA-1
chr5_3 CDS 3474870 3475082 3474870 ID=Msa0792350-mRNA-1:cds;Parent=Msa0792350-mRNA-1
chr5_3 CDS 3474449 3474753 3474449 ID=Msa0792350-mRNA-1:cds;Parent=Msa0792350-mRNA-1
chr5_3 CDS 3474063 3474141 3474063 ID=Msa0792350-mRNA-1:cds;Parent=Msa0792350-mRNA-1
chr5_3 CDS 3473409 3473645 3473409 ID=Msa0792350-mRNA-1:cds;Parent=Msa0792350-mRNA-1
chr5_3 CDS 3472833 3473326 3472833 ID=Msa0792350-mRNA-1:cds;Parent=Msa0792350-mRNA-1
chr5_3 CDS 3472235 3472535 3472235 ID=Msa0792350-mRNA-1:cds;Parent=Msa0792350-mRNA-1
chr5_3 three_prime_UTR 3471922 3472234 3471922 ID=Msa0792350-mRNA-1:three_prime_utr;Parent=Msa0792350-mRNA-1
Gene Sequence

>Msa0792350

ATGAGTCAACAGGAAAAGAAATTTGTGAGATTTGAAGATTGGAAGTCAGAATCATCATCTTTTAATTTTTCACAATATGATTCTTCAATTGATGGATTTGAAAAAAGAAAATCTAAACCAAGTGTTACTCCAGCAAAAAATAATGAAACATTGGAAAAACCAGCTTCTAGGTGTAGTGTTCTTGATCCACAAGGTCCACTACTTCAGAAATGGAACAAGATCTTTGTTATAACATGTGTGATGGCAGTATCTATGGATCCATTATTCTTTTACATCCCTGTGATTGATGACCAGGGAAAATGCCTTAATTTGAATGGAACATTGAAGATTACTGCTAGTGTTCTTCGCACGTTTTTCGATCTTTTCTACATTATTCGCATCGTCTTTCAGTTTCGAACCGGGTTTATTGCACCTTCTTCGCGCATTTTTGGAAGGGGAGAGCCGGTTGATGATCCTTTTGCTATAGCAATGAGATACTTAAGTTCTCACTTCATCATTGACATTCTATCAATTCTTCCACTTCCTCAGATGGTGATTTTAGCAATGATTCCAATTCCACAAGGCTCAGTTCCATATATAACAAAGGATTGGTTGAAGTATACGATAATAACACAGTACGCGCCAAGACTCATGCGAATCTATACGTTGTTCAATGAAGTAACAAGCACTTCTGGTATATTAACTGAGACAGCATGGGCTGGAGCTGCTTATAATCTATTTCTTTATATGCTAGCAAGTCATGTTGTTGGAGCATTTTGGTATTTGTTTTCGATAGAATCAGAGTTGCGTTGTTGGCGTAGACGATTGAAGAATACTCCATTCTTTGATGATTCCTATCTGAGCTGCGGACGACTCAATTCGACGCTTTTTTCAATTCTCAACAATTCTACAACTTGTCCTTACAAAGATCCTGATGATATTATTGGCCCAACAGTTTTCAATTTTGGAATATTTATTGATGCTCTAACGTCTCGTGTGGTGGAGTTGAATACAAACTTTCATCATAAATTCTTCTACTGCTTTTGGTGGGGTTTGCGCAATTTAAGTTCTGTTGGGCAGAACCTAAAGACAAGCACTTATATTGGGGAGATAATCTTTGCCATCTTCATTGCTGTCTTTGGATTGAAATATCTACAATCTACAACTGTTAGAGTTGAAGAGATGAGAATCAAAAGGAGGGATGCAGAACAATGGATGTGCCACCGTATGCTACCGGATCACTTGAAGCAAAGAATTCGACGGTATGAACAATACAAATGGCAAGAAAATCGAGGCGTCGAAGAAGAGAAACTAATTTACAACCTCCCTAAAGATCTGAGAAGAGACATAAAGAGACATCTTTGCTTAGATTTACTTAAAAAAGTGCCAATTTTTAGCAACATGGATAAACAGTTATTGGATGCAATGTGTGATAAACTGAAGCCGGTCCTTTATACCGAGAAAAGTTTCGTTGTTTGTGAAGGTGATCCAGTGGACGAAATGCTCTTCATCATGCGCGGAAAACTTAAGACCGCCACAACAAATGGTGGAAGAACTGGTTTCTTTAACTCGACGGAACTCAAGGCTGGTGATTTTTGTGGAGAGGAGCTTCTAACATGGGCCTTGGATCCTACAACCTCTTCAAACTTACCTATTTCGACTAGTACAGTTGAAACTATTACAGAAGTTGAAGCTTTTGCTCTCATGCATGATGACTTGAGGATCGTTGCTTCCCAATTTCGACGTCTTATTAACAGAAAAGACCTCCAACACACTTTCAGGCAAGGCTTGATATATTTTTTCACCTTAGATAATGCTTCCCAATTTCGTTTTTGTAGAAAAAATTTACATTATAAGAAACAAGGTGCATTGCAGAAGTTTTATTCCTTGCAATGGAGGACATGGGGAGCGCGGTTCATACAAGTAATATGGCGTCGATACAGGGAAAAAAGGGCTCAGAAATTGTTACGTGAAACGGAAAAAAGGCAACAAAATGCTTCTGAAAATGAGGAAGAGTCTTCTTCACCAAGCATTGGTTCCACTGTATATGTACAAAGGTTTGCATCAAATGCATTAAAGCACTTGAGAAGTGGCAAAAGAGTGACACAGACAAAGAAATTTCTACCACTTTTACCTCAGAAACCAACTGAGCCAGATTTCATTACTCAAAAAAACTAA
Protein sequence

>Msa0792350

MSQQEKKFVRFEDWKSESSSFNFSQYDSSIDGFEKRKSKPSVTPAKNNETLEKPASRCSVLDPQGPLLQKWNKIFVITCVMAVSMDPLFFYIPVIDDQGKCLNLNGTLKITASVLRTFFDLFYIIRIVFQFRTGFIAPSSRIFGRGEPVDDPFAIAMRYLSSHFIIDILSILPLPQMVILAMIPIPQGSVPYITKDWLKYTIITQYAPRLMRIYTLFNEVTSTSGILTETAWAGAAYNLFLYMLASHVVGAFWYLFSIESELRCWRRRLKNTPFFDDSYLSCGRLNSTLFSILNNSTTCPYKDPDDIIGPTVFNFGIFIDALTSRVVELNTNFHHKFFYCFWWGLRNLSSVGQNLKTSTYIGEIIFAIFIAVFGLKYLQSTTVRVEEMRIKRRDAEQWMCHRMLPDHLKQRIRRYEQYKWQENRGVEEEKLIYNLPKDLRRDIKRHLCLDLLKKVPIFSNMDKQLLDAMCDKLKPVLYTEKSFVVCEGDPVDEMLFIMRGKLKTATTNGGRTGFFNSTELKAGDFCGEELLTWALDPTTSSNLPISTSTVETITEVEAFALMHDDLRIVASQFRRLINRKDLQHTFRQGLIYFFTLDNASQFRFCRKNLHYKKQGALQKFYSLQWRTWGARFIQVIWRRYREKRAQKLLRETEKRQQNASENEEESSSPSIGSTVYVQRFASNALKHLRSGKRVTQTKKFLPLLPQKPTEPDFITQKN*