AlfalfaGEDB | Msa1246670

M. sativa cultivar zhongmu-4 / Msa1246670

KEGG: -
GO: -
PFAM: PF01453.27

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1246670	XP_039685273.1	90.698	817	63	1	1	804	1	817	0.0	1532

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1246670	sp\|O81832\|Y4729_ARATH	48.692	803	353	9	15	804	27	783	0.0	763

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1246670	A0A396GLE7	90.698	817	63	1	1	804	1	817	0.0	1532

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa1246660	Msa1246670	0.882221	1.248953e-70	-8.615850e-47
Msa1246670	Msa1285890	0.825567	4.368084e-54	-8.615850e-47
Msa1246670	Msa1287650	0.892870	1.065498e-74	-8.615850e-47
Msa1246670	Msa1287670	0.891898	2.608744e-74	-8.615850e-47
Msa1246670	Msa1287680	0.830895	2.270195e-55	-8.615850e-47
Msa1246670	Msa1437720	0.857584	1.477909e-62	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa1246670	MtrunA17_Chr8g0361301	90.698	817	63	1	1	804	1	817	1532
Msa1246670	MtrunA17_Chr8g0361261	90.820	817	62	1	1	804	32	848	1532
Msa1246670	MtrunA17_Chr8g0361251	74.566	806	195	2	9	804	12	817	1261
Msa1246670	MtrunA17_Chr3g0084411	54.172	803	344	9	15	804	29	820	851
Msa1246670	MtrunA17_Chr3g0084681	53.729	791	314	7	18	804	35	777	842
Msa1246670	MtrunA17_Chr3g0084491	54.271	796	335	12	18	804	48	823	832
Msa1246670	MtrunA17_Chr3g0084441	52.441	799	358	8	18	804	35	823	830
Msa1246670	MtrunA17_Chr3g0084451	53.990	802	341	13	18	804	35	823	823
Msa1246670	MtrunA17_Chr3g0084431	53.567	799	336	10	18	804	35	810	822
Msa1246670	MtrunA17_Chr3g0084421	53.836	782	338	8	36	804	12	783	822

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa1246670	AT4G27290.2	49.815	811	378	13	15	804	27	829	785
Msa1246670	AT4G27290.1	48.692	803	353	9	15	804	27	783	763
Msa1246670	AT4G27300.1	47.015	804	384	16	21	804	34	815	674
Msa1246670	AT4G21380.1	42.579	822	425	12	20	804	39	850	664
Msa1246670	AT1G11340.1	43.893	786	413	13	19	783	26	804	659
Msa1246670	AT1G65790.1	41.892	814	437	10	20	804	37	843	648
Msa1246670	AT1G65800.1	44.091	787	411	13	20	783	37	817	642
Msa1246670	AT1G11410.1	43.528	788	420	12	18	783	28	812	632
Msa1246670	AT1G11410.4	43.528	788	420	12	18	783	35	819	632
Msa1246670	AT1G11410.3	43.473	789	421	12	17	783	3	788	630

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Find 157 sgRNAs with CRISPR-Local

Find 229 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATAAGTTCTATTCGTCG+TGG	0.609658	8_2:+38339379	Msa1246670:CDS
AAACCAAAGTCTGGCCATCA+TGG	0.493923	8_2:-38338978	None:intergenic
AAACTAAATATTGGTAGATC+AGG	0.415406	8_2:-38340854	None:intergenic
AAACTGCATCACAGGGATAA+AGG	0.392925	8_2:-38342320	None:intergenic
AAACTTGGGGAAGGTGGATT+TGG	0.277862	8_2:+38340920	Msa1246670:CDS
AAAGCATTCAAACTTCCCAA+AGG	0.640053	8_2:-38339654	None:intergenic
AAAGTCCCTTCTTCGGAATT+GGG	0.379192	8_2:+38340134	Msa1246670:CDS
AAATCAGATGTGTTTAGTTT+CGG	0.367177	8_2:+38341711	Msa1246670:CDS
AACAACCACTTCCTCCATTT+CGG	0.340352	8_2:-38340046	None:intergenic
AACAGTGGAATATATCATCT+TGG	0.492165	8_2:+38339835	Msa1246670:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACACCAGTGCAAAATAATTT+AGG	+	chr8_2:38339120-38339139	Msa1246670:CDS	30.0%
GTCTTAAAGCTCAATGAAAA+TGG	+	chr8_2:38339144-38339163	Msa1246670:CDS	30.0%
GCAGTTATTGAATTTATCAC+TGG	-	chr8_2:38339231-38339250	None:intergenic	30.0%
AAAATAAGTTCTATTCGTCG+TGG	+	chr8_2:38339379-38339398	Msa1246670:CDS	30.0%
TCGGTAATTATTGACATTAG+AGG	+	chr8_2:38339435-38339454	Msa1246670:CDS	30.0%
TCCTCAAATAGTTGTTATGA+AGG	+	chr8_2:38339461-38339480	Msa1246670:CDS	30.0%
CCTCAAATAGTTGTTATGAA+GGG	+	chr8_2:38339462-38339481	Msa1246670:CDS	30.0%
TAAGATTGAGAATAGGATCA+TGG	+	chr8_2:38339493-38339512	Msa1246670:CDS	30.0%
TAATGGTTGTATTGGATATC+CGG	-	chr8_2:38339535-38339554	None:intergenic	30.0%
TGCTAATTCAGTATGCAATA+TGG	+	chr8_2:38339758-38339777	Msa1246670:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_2	gene	38338916	38342403	38338916	ID=Msa1246670;Name=Msa1246670
chr8_2	mRNA	38338916	38342403	38338916	ID=Msa1246670-mRNA-1;Parent=Msa1246670;Name=Msa1246670-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0\|1\|0.85\|1\|1\|1\|7\|211\|804
chr8_2	exon	38338916	38340155	38338916	ID=Msa1246670-mRNA-1:exon:11955;Parent=Msa1246670-mRNA-1
chr8_2	exon	38340442	38340558	38340442	ID=Msa1246670-mRNA-1:exon:11956;Parent=Msa1246670-mRNA-1
chr8_2	exon	38340783	38340955	38340783	ID=Msa1246670-mRNA-1:exon:11957;Parent=Msa1246670-mRNA-1
chr8_2	exon	38341036	38341246	38341036	ID=Msa1246670-mRNA-1:exon:11958;Parent=Msa1246670-mRNA-1
chr8_2	exon	38341347	38341584	38341347	ID=Msa1246670-mRNA-1:exon:11959;Parent=Msa1246670-mRNA-1
chr8_2	exon	38341665	38341815	38341665	ID=Msa1246670-mRNA-1:exon:11960;Parent=Msa1246670-mRNA-1
chr8_2	exon	38341908	38342403	38341908	ID=Msa1246670-mRNA-1:exon:11961;Parent=Msa1246670-mRNA-1
chr8_2	CDS	38338916	38340155	38338916	ID=Msa1246670-mRNA-1:cds;Parent=Msa1246670-mRNA-1
chr8_2	CDS	38340442	38340558	38340442	ID=Msa1246670-mRNA-1:cds;Parent=Msa1246670-mRNA-1
chr8_2	CDS	38340783	38340955	38340783	ID=Msa1246670-mRNA-1:cds;Parent=Msa1246670-mRNA-1
chr8_2	CDS	38341036	38341246	38341036	ID=Msa1246670-mRNA-1:cds;Parent=Msa1246670-mRNA-1
chr8_2	CDS	38341347	38341584	38341347	ID=Msa1246670-mRNA-1:cds;Parent=Msa1246670-mRNA-1
chr8_2	CDS	38341665	38341815	38341665	ID=Msa1246670-mRNA-1:cds;Parent=Msa1246670-mRNA-1
chr8_2	CDS	38341908	38342192	38341908	ID=Msa1246670-mRNA-1:cds;Parent=Msa1246670-mRNA-1
chr8_2	three_prime_UTR	38342193	38342403	38342193	ID=Msa1246670-mRNA-1:three_prime_utr;Parent=Msa1246670-mRNA-1

Gene Sequence

>Msa1246670

ATGGTTGATATTAGAATCACAGAGTTCATAATTTTGTTCTTTTTATCTCTGAATCAATCTATCCATGATGGCCAGACTTTGGTTTCAGCACGTGGAACTTTTGAAGTCGGTTTCTTCAGTCCAGGAAATTCAAGAGGAAGATATTTAGGTATGTGGTATAAAAATTTAACTCCTTTGACTATTGTGTGGGTGGCCAACAGAGAAACACCAGTGCAAAATAATTTAGGAGTCTTAAAGCTCAATGAAAATGGTGTTCTTATGATTCTCAATGGCACAAACAACACCATTTGGTCCTCGAATGCCTCAAGCAAACCAGTGATAAATTCAATAACTGCACAGCTCATGGACACAGGAAATCTTGTGTTGAAAAATTCGGCAAACAATATTTTGTGGCAGAGTTTTGACTATCCATGTGATACATTTTTGCCAGGAATGAAGCTTGGATGGAACTTAGTAACCGGTCAAAATAAGTTCTATTCGTCGTGGAAAAGTTCAAATGATCCAGCTAAGGGAGATCATTCGGTAATTATTGACATTAGAGGATATCCTCAAATAGTTGTTATGAAGGGATCAGTTATAAGATTGAGAATAGGATCATGGAATGGTCACACTTTTACCGGATATCCAATACAACCATTAAAACGAACGCAAAGATATGAATTTGTCATGACGGACAAAGAAGTGTATCTTTGGTATGAACTCATTGATAGCTCTGTTGTGTCAATTTTTGCAGTCTGCCCTTTGGGAAGTTTGAATGCTTTAGCCTGGACAAGTGAAACAAGCGATAGGATAGTCATCCAAACTGGAATGGAAGATTCGTGTGATAGTTATGCATTGTGTGGTGCTAATTCAGTATGCAATATGGACGGAAACGTTCCTAAATGTGAATGCTTAAAAGGTTATGTTCCTAAGTTTCCCGAACAGTGGAATATATCATCTTGGTCTAGTGGTTGTGTTCCGAAAATTAAGTCTTTTTGTGATAACAATTCCACAATTGGCTTCTTGAAGTACGGAGAAATGAAATTGCCGGACACATCTTCATCAAGGTACAATAAAACCATGAGCCTGCTGGAATGTCAAAAAGCGTGTATGAAAAATTGTTCGTGTACGGCTTATACAAATGCGGATATCCGAAATGGAGGAAGTGGTTGTTTGCTTTGGTTTGATGATCTGGTTGACATGAGAATATTCTCTCAGTGGGGACAAGATCTCTATATCAAAGTCCCTTCTTCGGAATTGGATGTTGTTAGTGTTAATAGCAACAAAAACCAGAAGCCACAGTTGATACGGATCACAGTTGTCGTGATAATTTCAGGATTCCTTACATGTGCTTGCATAATAATATCTATAAAGAGAGTGGCGCCGAGAGTATATCATCTTGCACCATTTCAATTGCGGAAAAAATATTTTAGGTTGAAGAAAGAAGAGCCTGATCTACCAATATTTAGTTTTCCAATCATTGTTAAAGCAACTGGTAATTTTTCTGGCAGAAATAAACTTGGGGAAGGTGGATTTGGACCAGTTTATAAGGGTACGCTGATAGGTGGAAAAGAGGTAGCCATAAAACGGAACTCAAAAATATCTGATCAAGGGTTGGAGGAATTTAAAAATGAAGTTCTGTTGATTGCAAAGCTTCAGCACCGTAATCTTGTGAAGCTTCTTGGTTGTTGTATTCACAGAGAGGAAAAATTGTTGATCTATGAATACATGCCCAATAGGAGCTTAGACTACTTCATCTTTGATGAAACTAGAAGCAAACTCTTGGACTGGTCGAAGCGTTCCCATATTATTGCTGGCGTTGCTAGAGGACTTCTTTATCTTCACCAAGACTCCAGACTTAGAATAATTCACAGAGATTTAAAGCTAAGCAATATCTTACTAGACGCCCTTATGAATCCAAAAATCTCAGACTTTGGCCTGGCTCGGACATTTTGTGGAGATCAAGTTGAAGCCAAAACAAGGAAATTGGTTGGAACATATGGCTACATGCCTCCAGAGTATGCTGTGCATGGTCGTTACTCCATGAAATCAGATGTGTTTAGTTTCGGAGTAATAGTATTGGAGATAATAAGCGGGAAAAAGATTAAGGTGTTTTATGATCCAGAACACTCTCTCAACCTTCTTGGCCATGCATGGAGACTCTGGATTGATAACATGGCAATGGAACTAGTTGATATCCACTTACTTGAAACAATCAATTATTCTGAAATCTTACGATATATACATGTTGGGTTGTTGTGCGTACAAGAAAAACCGGGAGATAGACCAGACATGTCATTTGTAATTCTTATGTTGAATGGTGAGAAATTATTGTCTCAGCCGAAAGCTCCGGGATTTTATACTGGAAGGGGATTACCTAAAACAATATCGCCAACTTCAAATGAGATGTCAATTACAACTTTTGAGGCAAGATAA

Protein sequence

>Msa1246670

MVDIRITEFIILFFLSLNQSIHDGQTLVSARGTFEVGFFSPGNSRGRYLGMWYKNLTPLTIVWVANRETPVQNNLGVLKLNENGVLMILNGTNNTIWSSNASSKPVINSITAQLMDTGNLVLKNSANNILWQSFDYPCDTFLPGMKLGWNLVTGQNKFYSSWKSSNDPAKGDHSVIIDIRGYPQIVVMKGSVIRLRIGSWNGHTFTGYPIQPLKRTQRYEFVMTDKEVYLWYELIDSSVVSIFAVCPLGSLNALAWTSETSDRIVIQTGMEDSCDSYALCGANSVCNMDGNVPKCECLKGYVPKFPEQWNISSWSSGCVPKIKSFCDNNSTIGFLKYGEMKLPDTSSSRYNKTMSLLECQKACMKNCSCTAYTNADIRNGGSGCLLWFDDLVDMRIFSQWGQDLYIKVPSSELDVVSVNSNKNQKPQLIRITVVVIISGFLTCACIIISIKRVAPRVYHLAPFQLRKKYFRLKKEEPDLPIFSFPIIVKATGNFSGRNKLGEGGFGPVYKGTLIGGKEVAIKRNSKISDQGLEEFKNEVLLIAKLQHRNLVKLLGCCIHREEKLLIYEYMPNRSLDYFIFDETRSKLLDWSKRSHIIAGVARGLLYLHQDSRLRIIHRDLKLSNILLDALMNPKISDFGLARTFCGDQVEAKTRKLVGTYGYMPPEYAVHGRYSMKSDVFSFGVIVLEIISGKKIKVFYDPEHSLNLLGHAWRLWIDNMAMELVDIHLLETINYSEILRYIHVGLLCVQEKPGDRPDMSFVILMLNGEKLLSQPKAPGFYTGRGLPKTISPTSNEMSITTFEAR*