Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1246820 | GAU48218.1 | 97.368 | 152 | 4 | 0 | 1 | 152 | 1 | 152 | 9.83e-104 | 303 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1246820 | sp|Q6NQE2|FQRL1_ARATH | 88.591 | 149 | 17 | 0 | 1 | 149 | 52 | 200 | 1.07e-94 | 275 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1246820 | A0A2Z6NVK5 | 97.368 | 152 | 4 | 0 | 1 | 152 | 1 | 152 | 4.70e-104 | 303 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1131770 | Msa1246820 | 0.861189 | 1.222086e-63 | -8.615850e-47 |
| Msa1192340 | Msa1246820 | 0.846247 | 2.448279e-59 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1246820 | MtrunA17_Chr8g0361451 | 98.684 | 152 | 2 | 0 | 1 | 152 | 52 | 203 | 3.41e-107 | 303 |
| Msa1246820 | MtrunA17_Chr2g0318961 | 90.132 | 152 | 15 | 0 | 1 | 152 | 52 | 203 | 4.73e-100 | 285 |
| Msa1246820 | MtrunA17_Chr4g0048841 | 81.879 | 149 | 27 | 0 | 1 | 149 | 87 | 235 | 1.88e-86 | 252 |
| Msa1246820 | MtrunA17_Chr8g0361461 | 93.333 | 120 | 8 | 0 | 33 | 152 | 1 | 120 | 3.41e-77 | 224 |
| Msa1246820 | MtrunA17_Chr5g0429671 | 70.667 | 150 | 43 | 1 | 1 | 149 | 53 | 202 | 9.62e-75 | 221 |
| Msa1246820 | MtrunA17_Chr2g0280641 | 70.470 | 149 | 44 | 0 | 1 | 149 | 52 | 200 | 1.64e-74 | 221 |
| Msa1246820 | MtrunA17_Chr4g0034601 | 69.128 | 149 | 45 | 1 | 1 | 148 | 100 | 248 | 3.58e-70 | 212 |
| Msa1246820 | MtrunA17_Chr5g0403681 | 63.158 | 152 | 55 | 1 | 1 | 151 | 101 | 252 | 1.68e-65 | 200 |
| Msa1246820 | MtrunA17_Chr4g0048831 | 82.051 | 117 | 17 | 1 | 33 | 149 | 1 | 113 | 2.17e-64 | 192 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1246820 | AT4G27270.4 | 88.591 | 149 | 17 | 0 | 1 | 149 | 1 | 149 | 6.69e-96 | 273 |
| Msa1246820 | AT4G27270.3 | 88.591 | 149 | 17 | 0 | 1 | 149 | 41 | 189 | 1.02e-95 | 275 |
| Msa1246820 | AT4G27270.2 | 88.591 | 149 | 17 | 0 | 1 | 149 | 41 | 189 | 1.02e-95 | 275 |
| Msa1246820 | AT4G27270.1 | 88.591 | 149 | 17 | 0 | 1 | 149 | 52 | 200 | 1.09e-95 | 275 |
| Msa1246820 | AT5G54500.1 | 88.591 | 149 | 17 | 0 | 1 | 149 | 52 | 200 | 1.71e-95 | 275 |
| Msa1246820 | AT4G36750.1 | 68.212 | 151 | 47 | 1 | 1 | 150 | 122 | 272 | 6.04e-70 | 212 |
| Msa1246820 | AT5G58800.1 | 65.333 | 150 | 52 | 0 | 3 | 152 | 56 | 205 | 1.32e-68 | 206 |
| Msa1246820 | AT5G58800.2 | 65.333 | 150 | 52 | 0 | 3 | 152 | 56 | 205 | 1.32e-68 | 206 |
| Msa1246820 | AT5G54500.2 | 71.918 | 146 | 33 | 2 | 1 | 146 | 52 | 189 | 6.45e-68 | 206 |
Find 48 sgRNAs with CRISPR-Local
Find 136 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATGATTGGTACATCACTTT+TGG | 0.233841 | 8_2:-38789396 | None:intergenic |
| TTTGGATTTCCAACAAGATT+TGG | 0.260288 | 8_2:+38789455 | Msa1246820:CDS |
| TTGGCCACCGCCTTGGGAAC+TGG | 0.307650 | 8_2:-38789576 | None:intergenic |
| GGAATGCTATTTGTTCCAAT+TGG | 0.311832 | 8_2:+38790028 | Msa1246820:CDS |
| CACCTTCAGTTAGTTCATTC+GGG | 0.339232 | 8_2:-38789421 | None:intergenic |
| GTTCCAATTGGGTATACATT+TGG | 0.346928 | 8_2:+38790040 | Msa1246820:CDS |
| TCACCTTCAGTTAGTTCATT+CGG | 0.361037 | 8_2:-38789422 | None:intergenic |
| CTTGAGTTTCTTTGTGATTG+TGG | 0.375549 | 8_2:-38790194 | None:intergenic |
| AGTCTCTTGGCCACCGCCTT+GGG | 0.379897 | 8_2:-38789582 | None:intergenic |
| TGGAAAACACAACAGCTTGC+AGG | 0.385865 | 8_2:+38789527 | Msa1246820:CDS |
| GAATGCTATTTGTTCCAATT+GGG | 0.403516 | 8_2:+38790029 | Msa1246820:CDS |
| TGTTCCAACTCAAGCTTAGT+TGG | 0.407575 | 8_2:-38790145 | None:intergenic |
| TCGATGCAACTGGAGGTCTA+TGG | 0.419239 | 8_2:+38789507 | Msa1246820:CDS |
| TAGTCTCTTGGCCACCGCCT+TGG | 0.422756 | 8_2:-38789583 | None:intergenic |
| ACTGGTGCTGTAGAAGATTC+CGG | 0.424333 | 8_2:-38789558 | None:intergenic |
| AGTTCATTCGGGATAATGAT+TGG | 0.424986 | 8_2:-38789410 | None:intergenic |
| GGTGGAAGTCCATATGGTTC+AGG | 0.428735 | 8_2:+38790094 | Msa1246820:CDS |
| GCCATCATTCCAAATCTTGT+TGG | 0.428775 | 8_2:-38789464 | None:intergenic |
| TCCAACAAGATTTGGAATGA+TGG | 0.429962 | 8_2:+38789463 | Msa1246820:CDS |
| AAAGCCTTTCTCGATGCAAC+TGG | 0.431984 | 8_2:+38789497 | Msa1246820:CDS |
| GCTCACTGCTATTACTCAAT+TGG | 0.453952 | 8_2:+38789997 | Msa1246820:CDS |
| GTGAAAGGTGGAAGTCCATA+TGG | 0.471477 | 8_2:+38790088 | Msa1246820:CDS |
| GCACCAAATGTATACCCAAT+TGG | 0.472027 | 8_2:-38790043 | None:intergenic |
| GCATATGTTCCTGAACCATA+TGG | 0.493129 | 8_2:-38790103 | None:intergenic |
| ATTGGGTATACATTTGGTGC+TGG | 0.497066 | 8_2:+38790046 | Msa1246820:CDS |
| GCTCTTACGCTGTAGTCTCT+TGG | 0.513071 | 8_2:-38789595 | None:intergenic |
| ACCTCCAGTTGCATCGAGAA+AGG | 0.515380 | 8_2:-38789501 | None:intergenic |
| ATTACTCAATTGGTGCATCA+TGG | 0.518479 | 8_2:+38790007 | Msa1246820:CDS |
| CAGCTTGCAGGGAAGCCTGC+CGG | 0.531216 | 8_2:+38789539 | Msa1246820:CDS |
| GGAAAACACAACAGCTTGCA+GGG | 0.531609 | 8_2:+38789528 | Msa1246820:CDS |
| TATGGTTCAGGAACATATGC+TGG | 0.562306 | 8_2:+38790106 | Msa1246820:CDS |
| TTCTACAGCACCAGTTCCCA+AGG | 0.562862 | 8_2:+38789566 | Msa1246820:CDS |
| AGCACCAGTTCCCAAGGCGG+TGG | 0.563694 | 8_2:+38789572 | Msa1246820:CDS |
| TGGCAATATACATCCCTTGG+TGG | 0.572606 | 8_2:-38790174 | None:intergenic |
| ACAGCCAACTAAGCTTGAGT+TGG | 0.584176 | 8_2:+38790141 | Msa1246820:CDS |
| GAGATGGAAGAAGTGAAAGG+TGG | 0.588670 | 8_2:+38790076 | Msa1246820:CDS |
| TCAGGAACATATGCTGGTGA+TGG | 0.599049 | 8_2:+38790112 | Msa1246820:CDS |
| TGGAACAAGCATTCCACCAA+GGG | 0.605202 | 8_2:+38790161 | Msa1246820:CDS |
| ATCCCGAATGAACTAACTGA+AGG | 0.610161 | 8_2:+38789419 | Msa1246820:CDS |
| GTGCTGTAGAAGATTCCGGC+AGG | 0.618731 | 8_2:-38789554 | None:intergenic |
| GCCTTTCTCGATGCAACTGG+AGG | 0.622678 | 8_2:+38789500 | Msa1246820:CDS |
| TGGTGCTGGAATGTTTGAGA+TGG | 0.623605 | 8_2:+38790060 | Msa1246820:CDS |
| CACAATCACAAAGAAACTCA+AGG | 0.627466 | 8_2:+38790195 | Msa1246820:CDS |
| TTGTGGCAATATACATCCCT+TGG | 0.635784 | 8_2:-38790177 | None:intergenic |
| AATGAACTAACTGAAGGTGA+TGG | 0.639063 | 8_2:+38789425 | Msa1246820:CDS |
| TTGGAACAAGCATTCCACCA+AGG | 0.678388 | 8_2:+38790160 | Msa1246820:CDS |
| TTTGAGATGGAAGAAGTGAA+AGG | 0.685250 | 8_2:+38790073 | Msa1246820:CDS |
| TACAGCACCAGTTCCCAAGG+CGG | 0.707283 | 8_2:+38789569 | Msa1246820:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTTTATAACAAAATTTACAA+TGG | - | chr8_2:38789690-38789709 | None:intergenic | 15.0% |
| !! | TTATAAATTTGTAACATGTT+CGG | - | chr8_2:38789842-38789861 | None:intergenic | 15.0% |
| !!! | ATATTTATGTTGAGAAATTT+TGG | + | chr8_2:38789958-38789977 | Msa1246820:intron | 15.0% |
| !! | GTTTATAACAAAATTTACAA+TGG | - | chr8_2:38789690-38789709 | None:intergenic | 15.0% |
| !! | TTATAAATTTGTAACATGTT+CGG | - | chr8_2:38789842-38789861 | None:intergenic | 15.0% |
| !!! | ATATTTATGTTGAGAAATTT+TGG | + | chr8_2:38789958-38789977 | Msa1246820:intron | 15.0% |
| !!! | GTGTGATTTAGTATATTTTT+TGG | - | chr8_2:38789773-38789792 | None:intergenic | 20.0% |
| !! | CATGTTACAAATTTATAAAC+TGG | + | chr8_2:38789844-38789863 | Msa1246820:intron | 20.0% |
| !!! | TCTTATTTTGATTTGATAGT+TGG | + | chr8_2:38789898-38789917 | Msa1246820:intron | 20.0% |
| !! | GAAATCTAAATCTATTAGAT+CGG | + | chr8_2:38789926-38789945 | Msa1246820:intron | 20.0% |
| !!! | GTGTGATTTAGTATATTTTT+TGG | - | chr8_2:38789773-38789792 | None:intergenic | 20.0% |
| !! | CATGTTACAAATTTATAAAC+TGG | + | chr8_2:38789844-38789863 | Msa1246820:intron | 20.0% |
| !!! | TCTTATTTTGATTTGATAGT+TGG | + | chr8_2:38789898-38789917 | Msa1246820:intron | 20.0% |
| !! | GAAATCTAAATCTATTAGAT+CGG | + | chr8_2:38789926-38789945 | Msa1246820:intron | 20.0% |
| !! | ATGATTGGTACATCACTTTT+GGG | - | chr8_2:38789398-38789417 | None:intergenic | 30.0% |
| ! | AATGATTGGTACATCACTTT+TGG | - | chr8_2:38789399-38789418 | None:intergenic | 30.0% |
| TTTGGATTTCCAACAAGATT+TGG | + | chr8_2:38789455-38789474 | Msa1246820:CDS | 30.0% | |
| TAGAGAATATGATCGAGTAA+AGG | - | chr8_2:38789620-38789639 | None:intergenic | 30.0% | |
| ATATTCTCTAGTGCTTTGTA+TGG | + | chr8_2:38789630-38789649 | Msa1246820:intron | 30.0% | |
| !! | TTACAGTGTCATTGTGATTT+TGG | + | chr8_2:38789732-38789751 | Msa1246820:intron | 30.0% |
| ! | TTTTGGATTTAATCTATGCC+AGG | + | chr8_2:38789975-38789994 | Msa1246820:intron | 30.0% |
| ! | GAATGCTATTTGTTCCAATT+GGG | + | chr8_2:38790029-38790048 | Msa1246820:CDS | 30.0% |
| !! | ATGATTGGTACATCACTTTT+GGG | - | chr8_2:38789398-38789417 | None:intergenic | 30.0% |
| ! | AATGATTGGTACATCACTTT+TGG | - | chr8_2:38789399-38789418 | None:intergenic | 30.0% |
| TTTGGATTTCCAACAAGATT+TGG | + | chr8_2:38789455-38789474 | Msa1246820:CDS | 30.0% | |
| TAGAGAATATGATCGAGTAA+AGG | - | chr8_2:38789620-38789639 | None:intergenic | 30.0% | |
| ATATTCTCTAGTGCTTTGTA+TGG | + | chr8_2:38789630-38789649 | Msa1246820:intron | 30.0% | |
| !! | TTACAGTGTCATTGTGATTT+TGG | + | chr8_2:38789732-38789751 | Msa1246820:intron | 30.0% |
| ! | TTTTGGATTTAATCTATGCC+AGG | + | chr8_2:38789975-38789994 | Msa1246820:intron | 30.0% |
| ! | GAATGCTATTTGTTCCAATT+GGG | + | chr8_2:38790029-38790048 | Msa1246820:CDS | 30.0% |
| AGTTCATTCGGGATAATGAT+TGG | - | chr8_2:38789413-38789432 | None:intergenic | 35.0% | |
| TCACCTTCAGTTAGTTCATT+CGG | - | chr8_2:38789425-38789444 | None:intergenic | 35.0% | |
| AATGAACTAACTGAAGGTGA+TGG | + | chr8_2:38789425-38789444 | Msa1246820:CDS | 35.0% | |
| ! | TCCAACAAGATTTGGAATGA+TGG | + | chr8_2:38789463-38789482 | Msa1246820:CDS | 35.0% |
| GTGAGAATTACATAACCACA+CGG | + | chr8_2:38789660-38789679 | Msa1246820:intron | 35.0% | |
| ATTACTCAATTGGTGCATCA+TGG | + | chr8_2:38790007-38790026 | Msa1246820:CDS | 35.0% | |
| ! | GGAATGCTATTTGTTCCAAT+TGG | + | chr8_2:38790028-38790047 | Msa1246820:CDS | 35.0% |
| GTTCCAATTGGGTATACATT+TGG | + | chr8_2:38790040-38790059 | Msa1246820:CDS | 35.0% | |
| ! | TTTGAGATGGAAGAAGTGAA+AGG | + | chr8_2:38790073-38790092 | Msa1246820:CDS | 35.0% |
| CTTGAGTTTCTTTGTGATTG+TGG | - | chr8_2:38790197-38790216 | None:intergenic | 35.0% | |
| CACAATCACAAAGAAACTCA+AGG | + | chr8_2:38790195-38790214 | Msa1246820:CDS | 35.0% | |
| AGTTCATTCGGGATAATGAT+TGG | - | chr8_2:38789413-38789432 | None:intergenic | 35.0% | |
| TCACCTTCAGTTAGTTCATT+CGG | - | chr8_2:38789425-38789444 | None:intergenic | 35.0% | |
| AATGAACTAACTGAAGGTGA+TGG | + | chr8_2:38789425-38789444 | Msa1246820:CDS | 35.0% | |
| ! | TCCAACAAGATTTGGAATGA+TGG | + | chr8_2:38789463-38789482 | Msa1246820:CDS | 35.0% |
| GTGAGAATTACATAACCACA+CGG | + | chr8_2:38789660-38789679 | Msa1246820:intron | 35.0% | |
| ATTACTCAATTGGTGCATCA+TGG | + | chr8_2:38790007-38790026 | Msa1246820:CDS | 35.0% | |
| ! | GGAATGCTATTTGTTCCAAT+TGG | + | chr8_2:38790028-38790047 | Msa1246820:CDS | 35.0% |
| GTTCCAATTGGGTATACATT+TGG | + | chr8_2:38790040-38790059 | Msa1246820:CDS | 35.0% | |
| ! | TTTGAGATGGAAGAAGTGAA+AGG | + | chr8_2:38790073-38790092 | Msa1246820:CDS | 35.0% |
| CTTGAGTTTCTTTGTGATTG+TGG | - | chr8_2:38790197-38790216 | None:intergenic | 35.0% | |
| CACAATCACAAAGAAACTCA+AGG | + | chr8_2:38790195-38790214 | Msa1246820:CDS | 35.0% | |
| !! | ATTGGTACATCACTTTTGGG+TGG | - | chr8_2:38789395-38789414 | None:intergenic | 40.0% |
| ATCCCGAATGAACTAACTGA+AGG | + | chr8_2:38789419-38789438 | Msa1246820:CDS | 40.0% | |
| CACCTTCAGTTAGTTCATTC+GGG | - | chr8_2:38789424-38789443 | None:intergenic | 40.0% | |
| !!! | GAAGGTGATGGTTTTGTCTT+TGG | + | chr8_2:38789437-38789456 | Msa1246820:CDS | 40.0% |
| GCCATCATTCCAAATCTTGT+TGG | - | chr8_2:38789467-38789486 | None:intergenic | 40.0% | |
| ! | ATTTACAATGGTTAGCCGTG+TGG | - | chr8_2:38789678-38789697 | None:intergenic | 40.0% |
| ! | GGTCTAATCTTTTGACCAGA+TGG | - | chr8_2:38789821-38789840 | None:intergenic | 40.0% |
| GCTCACTGCTATTACTCAAT+TGG | + | chr8_2:38789997-38790016 | Msa1246820:CDS | 40.0% | |
| GCACCAAATGTATACCCAAT+TGG | - | chr8_2:38790046-38790065 | None:intergenic | 40.0% | |
| !! | ATTGGGTATACATTTGGTGC+TGG | + | chr8_2:38790046-38790065 | Msa1246820:CDS | 40.0% |
| GCATATGTTCCTGAACCATA+TGG | - | chr8_2:38790106-38790125 | None:intergenic | 40.0% | |
| TATGGTTCAGGAACATATGC+TGG | + | chr8_2:38790106-38790125 | Msa1246820:CDS | 40.0% | |
| TGTTCCAACTCAAGCTTAGT+TGG | - | chr8_2:38790148-38790167 | None:intergenic | 40.0% | |
| TTGTGGCAATATACATCCCT+TGG | - | chr8_2:38790180-38790199 | None:intergenic | 40.0% | |
| !! | ATTGGTACATCACTTTTGGG+TGG | - | chr8_2:38789395-38789414 | None:intergenic | 40.0% |
| ATCCCGAATGAACTAACTGA+AGG | + | chr8_2:38789419-38789438 | Msa1246820:CDS | 40.0% | |
| CACCTTCAGTTAGTTCATTC+GGG | - | chr8_2:38789424-38789443 | None:intergenic | 40.0% | |
| !!! | GAAGGTGATGGTTTTGTCTT+TGG | + | chr8_2:38789437-38789456 | Msa1246820:CDS | 40.0% |
| GCCATCATTCCAAATCTTGT+TGG | - | chr8_2:38789467-38789486 | None:intergenic | 40.0% | |
| ! | ATTTACAATGGTTAGCCGTG+TGG | - | chr8_2:38789678-38789697 | None:intergenic | 40.0% |
| ! | GGTCTAATCTTTTGACCAGA+TGG | - | chr8_2:38789821-38789840 | None:intergenic | 40.0% |
| GCTCACTGCTATTACTCAAT+TGG | + | chr8_2:38789997-38790016 | Msa1246820:CDS | 40.0% | |
| GCACCAAATGTATACCCAAT+TGG | - | chr8_2:38790046-38790065 | None:intergenic | 40.0% | |
| !! | ATTGGGTATACATTTGGTGC+TGG | + | chr8_2:38790046-38790065 | Msa1246820:CDS | 40.0% |
| GCATATGTTCCTGAACCATA+TGG | - | chr8_2:38790106-38790125 | None:intergenic | 40.0% | |
| TATGGTTCAGGAACATATGC+TGG | + | chr8_2:38790106-38790125 | Msa1246820:CDS | 40.0% | |
| TGTTCCAACTCAAGCTTAGT+TGG | - | chr8_2:38790148-38790167 | None:intergenic | 40.0% | |
| TTGTGGCAATATACATCCCT+TGG | - | chr8_2:38790180-38790199 | None:intergenic | 40.0% | |
| AAAGCCTTTCTCGATGCAAC+TGG | + | chr8_2:38789497-38789516 | Msa1246820:CDS | 45.0% | |
| TGGAAAACACAACAGCTTGC+AGG | + | chr8_2:38789527-38789546 | Msa1246820:CDS | 45.0% | |
| GGAAAACACAACAGCTTGCA+GGG | + | chr8_2:38789528-38789547 | Msa1246820:CDS | 45.0% | |
| !! | ACTGGTGCTGTAGAAGATTC+CGG | - | chr8_2:38789561-38789580 | None:intergenic | 45.0% |
| ! | ACACATTTGACGCATCGACA+CGG | + | chr8_2:38789789-38789808 | Msa1246820:intron | 45.0% |
| TTGAGTAATAGCAGTGAGCC+TGG | - | chr8_2:38789996-38790015 | None:intergenic | 45.0% | |
| ! | TGGTGCTGGAATGTTTGAGA+TGG | + | chr8_2:38790060-38790079 | Msa1246820:CDS | 45.0% |
| GAGATGGAAGAAGTGAAAGG+TGG | + | chr8_2:38790076-38790095 | Msa1246820:CDS | 45.0% | |
| GTGAAAGGTGGAAGTCCATA+TGG | + | chr8_2:38790088-38790107 | Msa1246820:CDS | 45.0% | |
| TCAGGAACATATGCTGGTGA+TGG | + | chr8_2:38790112-38790131 | Msa1246820:CDS | 45.0% | |
| ACAGCCAACTAAGCTTGAGT+TGG | + | chr8_2:38790141-38790160 | Msa1246820:CDS | 45.0% | |
| TTGGAACAAGCATTCCACCA+AGG | + | chr8_2:38790160-38790179 | Msa1246820:CDS | 45.0% | |
| TGGAACAAGCATTCCACCAA+GGG | + | chr8_2:38790161-38790180 | Msa1246820:CDS | 45.0% | |
| TGGCAATATACATCCCTTGG+TGG | - | chr8_2:38790177-38790196 | None:intergenic | 45.0% | |
| AAAGCCTTTCTCGATGCAAC+TGG | + | chr8_2:38789497-38789516 | Msa1246820:CDS | 45.0% | |
| TGGAAAACACAACAGCTTGC+AGG | + | chr8_2:38789527-38789546 | Msa1246820:CDS | 45.0% | |
| GGAAAACACAACAGCTTGCA+GGG | + | chr8_2:38789528-38789547 | Msa1246820:CDS | 45.0% | |
| !! | ACTGGTGCTGTAGAAGATTC+CGG | - | chr8_2:38789561-38789580 | None:intergenic | 45.0% |
| ! | ACACATTTGACGCATCGACA+CGG | + | chr8_2:38789789-38789808 | Msa1246820:intron | 45.0% |
| TTGAGTAATAGCAGTGAGCC+TGG | - | chr8_2:38789996-38790015 | None:intergenic | 45.0% | |
| ! | TGGTGCTGGAATGTTTGAGA+TGG | + | chr8_2:38790060-38790079 | Msa1246820:CDS | 45.0% |
| GAGATGGAAGAAGTGAAAGG+TGG | + | chr8_2:38790076-38790095 | Msa1246820:CDS | 45.0% | |
| GTGAAAGGTGGAAGTCCATA+TGG | + | chr8_2:38790088-38790107 | Msa1246820:CDS | 45.0% | |
| TCAGGAACATATGCTGGTGA+TGG | + | chr8_2:38790112-38790131 | Msa1246820:CDS | 45.0% | |
| ACAGCCAACTAAGCTTGAGT+TGG | + | chr8_2:38790141-38790160 | Msa1246820:CDS | 45.0% | |
| TTGGAACAAGCATTCCACCA+AGG | + | chr8_2:38790160-38790179 | Msa1246820:CDS | 45.0% | |
| TGGAACAAGCATTCCACCAA+GGG | + | chr8_2:38790161-38790180 | Msa1246820:CDS | 45.0% | |
| TGGCAATATACATCCCTTGG+TGG | - | chr8_2:38790177-38790196 | None:intergenic | 45.0% | |
| ACCTCCAGTTGCATCGAGAA+AGG | - | chr8_2:38789504-38789523 | None:intergenic | 50.0% | |
| TCGATGCAACTGGAGGTCTA+TGG | + | chr8_2:38789507-38789526 | Msa1246820:CDS | 50.0% | |
| TTCTACAGCACCAGTTCCCA+AGG | + | chr8_2:38789566-38789585 | Msa1246820:CDS | 50.0% | |
| GCTCTTACGCTGTAGTCTCT+TGG | - | chr8_2:38789598-38789617 | None:intergenic | 50.0% | |
| TCGACACGGTCTTTACCATC+TGG | + | chr8_2:38789803-38789822 | Msa1246820:intron | 50.0% | |
| GGTGGAAGTCCATATGGTTC+AGG | + | chr8_2:38790094-38790113 | Msa1246820:CDS | 50.0% | |
| ACCTCCAGTTGCATCGAGAA+AGG | - | chr8_2:38789504-38789523 | None:intergenic | 50.0% | |
| TCGATGCAACTGGAGGTCTA+TGG | + | chr8_2:38789507-38789526 | Msa1246820:CDS | 50.0% | |
| TTCTACAGCACCAGTTCCCA+AGG | + | chr8_2:38789566-38789585 | Msa1246820:CDS | 50.0% | |
| GCTCTTACGCTGTAGTCTCT+TGG | - | chr8_2:38789598-38789617 | None:intergenic | 50.0% | |
| TCGACACGGTCTTTACCATC+TGG | + | chr8_2:38789803-38789822 | Msa1246820:intron | 50.0% | |
| GGTGGAAGTCCATATGGTTC+AGG | + | chr8_2:38790094-38790113 | Msa1246820:CDS | 50.0% | |
| GCCTTTCTCGATGCAACTGG+AGG | + | chr8_2:38789500-38789519 | Msa1246820:CDS | 55.0% | |
| GTGCTGTAGAAGATTCCGGC+AGG | - | chr8_2:38789557-38789576 | None:intergenic | 55.0% | |
| TACAGCACCAGTTCCCAAGG+CGG | + | chr8_2:38789569-38789588 | Msa1246820:CDS | 55.0% | |
| GCCTTTCTCGATGCAACTGG+AGG | + | chr8_2:38789500-38789519 | Msa1246820:CDS | 55.0% | |
| GTGCTGTAGAAGATTCCGGC+AGG | - | chr8_2:38789557-38789576 | None:intergenic | 55.0% | |
| TACAGCACCAGTTCCCAAGG+CGG | + | chr8_2:38789569-38789588 | Msa1246820:CDS | 55.0% | |
| AGTCTCTTGGCCACCGCCTT+GGG | - | chr8_2:38789585-38789604 | None:intergenic | 60.0% | |
| TAGTCTCTTGGCCACCGCCT+TGG | - | chr8_2:38789586-38789605 | None:intergenic | 60.0% | |
| AGTCTCTTGGCCACCGCCTT+GGG | - | chr8_2:38789585-38789604 | None:intergenic | 60.0% | |
| TAGTCTCTTGGCCACCGCCT+TGG | - | chr8_2:38789586-38789605 | None:intergenic | 60.0% | |
| CAGCTTGCAGGGAAGCCTGC+CGG | + | chr8_2:38789539-38789558 | Msa1246820:CDS | 65.0% | |
| AGCACCAGTTCCCAAGGCGG+TGG | + | chr8_2:38789572-38789591 | Msa1246820:CDS | 65.0% | |
| TTGGCCACCGCCTTGGGAAC+TGG | - | chr8_2:38789579-38789598 | None:intergenic | 65.0% | |
| CAGCTTGCAGGGAAGCCTGC+CGG | + | chr8_2:38789539-38789558 | Msa1246820:CDS | 65.0% | |
| AGCACCAGTTCCCAAGGCGG+TGG | + | chr8_2:38789572-38789591 | Msa1246820:CDS | 65.0% | |
| TTGGCCACCGCCTTGGGAAC+TGG | - | chr8_2:38789579-38789598 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 38789383 | 38790228 | 38789383 | ID=Msa1246820;Name=Msa1246820 |
| chr8_2 | mRNA | 38789383 | 38790228 | 38789383 | ID=Msa1246820-mRNA-1;Parent=Msa1246820;Name=Msa1246820-mRNA-1;_AED=0.16;_eAED=0.16;_QI=0|0|0|1|1|1|2|0|152 |
| chr8_2 | exon | 38789383 | 38789609 | 38789383 | ID=Msa1246820-mRNA-1:exon:12046;Parent=Msa1246820-mRNA-1 |
| chr8_2 | exon | 38789997 | 38790228 | 38789997 | ID=Msa1246820-mRNA-1:exon:12047;Parent=Msa1246820-mRNA-1 |
| chr8_2 | CDS | 38789383 | 38789609 | 38789383 | ID=Msa1246820-mRNA-1:cds;Parent=Msa1246820-mRNA-1 |
| chr8_2 | CDS | 38789997 | 38790228 | 38789997 | ID=Msa1246820-mRNA-1:cds;Parent=Msa1246820-mRNA-1 |
| Gene Sequence |
| Protein sequence |
