Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1131770 | XP_013445638.1 | 90.306 | 196 | 10 | 2 | 3 | 198 | 17 | 203 | 4.09e-118 | 343 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1131770 | sp|Q9LSQ5|FQR1_ARATH | 79.275 | 193 | 31 | 2 | 3 | 195 | 17 | 200 | 1.13e-104 | 302 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1131770 | A0A072TQ77 | 90.306 | 196 | 10 | 2 | 3 | 198 | 17 | 203 | 1.95e-118 | 343 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0024650 | Msa1131770 | 0.804174 | 2.451234e-49 | -8.615850e-47 |
| Msa0038180 | Msa1131770 | 0.804108 | 2.530168e-49 | -8.615850e-47 |
| Msa0040360 | Msa1131770 | 0.805996 | 1.019410e-49 | -8.615850e-47 |
| Msa0046430 | Msa1131770 | 0.815518 | 8.871743e-52 | -8.615850e-47 |
| Msa0064990 | Msa1131770 | 0.809386 | 1.941173e-50 | -8.615850e-47 |
| Msa0073110 | Msa1131770 | 0.802955 | 4.387777e-49 | -8.615850e-47 |
| Msa0085670 | Msa1131770 | 0.815445 | 9.213403e-52 | -8.615850e-47 |
| Msa0090190 | Msa1131770 | 0.803145 | 4.008106e-49 | -8.615850e-47 |
| Msa0614960 | Msa1131770 | 0.810314 | 1.226010e-50 | -8.615850e-47 |
| Msa0647300 | Msa1131770 | 0.806386 | 8.434965e-50 | -8.615850e-47 |
| Msa0686830 | Msa1131770 | 0.808681 | 2.748432e-50 | -8.615850e-47 |
| Msa0699170 | Msa1131770 | 0.807558 | 4.765727e-50 | -8.615850e-47 |
| Msa0120860 | Msa1131770 | 0.810062 | 1.389184e-50 | -8.615850e-47 |
| Msa0121320 | Msa1131770 | 0.822037 | 2.934213e-53 | -8.615850e-47 |
| Msa0132110 | Msa1131770 | 0.808360 | 3.218477e-50 | -8.615850e-47 |
| Msa0137760 | Msa1131770 | 0.830719 | 2.507168e-55 | -8.615850e-47 |
| Msa0138870 | Msa1131770 | 0.803565 | 3.280397e-49 | -8.615850e-47 |
| Msa0166180 | Msa1131770 | 0.823184 | 1.588133e-53 | -8.615850e-47 |
| Msa0174990 | Msa1131770 | 0.807431 | 5.072347e-50 | -8.615850e-47 |
| Msa0182840 | Msa1131770 | 0.811212 | 7.837601e-51 | -8.615850e-47 |
| Msa0190890 | Msa1131770 | 0.800508 | 1.394753e-48 | -8.615850e-47 |
| Msa0233210 | Msa1131770 | 0.801449 | 8.957303e-49 | -8.615850e-47 |
| Msa0238110 | Msa1131770 | 0.809919 | 1.491086e-50 | -8.615850e-47 |
| Msa0238140 | Msa1131770 | 0.816933 | 4.283822e-52 | -8.615850e-47 |
| Msa0374470 | Msa1131770 | 0.801053 | 1.079533e-48 | -8.615850e-47 |
| Msa0374560 | Msa1131770 | 0.800818 | 1.205928e-48 | -8.615850e-47 |
| Msa0374600 | Msa1131770 | 0.803252 | 3.808642e-49 | -8.615850e-47 |
| Msa0463970 | Msa1131770 | 0.810445 | 1.148906e-50 | -8.615850e-47 |
| Msa0470420 | Msa1131770 | 0.806654 | 7.406268e-50 | -8.615850e-47 |
| Msa0472820 | Msa1131770 | 0.810276 | 1.249072e-50 | -8.615850e-47 |
| Msa0982560 | Msa1131770 | 0.803511 | 3.367094e-49 | -8.615850e-47 |
| Msa0242720 | Msa1131770 | 0.806307 | 8.766482e-50 | -8.615850e-47 |
| Msa0303650 | Msa1131770 | 0.801133 | 1.039553e-48 | -8.615850e-47 |
| Msa1108560 | Msa1131770 | 0.804092 | 2.550097e-49 | -8.615850e-47 |
| Msa1131770 | Msa1146980 | 0.805319 | 1.414085e-49 | -8.615850e-47 |
| Msa1131770 | Msa1184680 | 0.807530 | 4.832593e-50 | -8.615850e-47 |
| Msa1131770 | Msa1192340 | 0.863867 | 1.832230e-64 | -8.615850e-47 |
| Msa1131770 | Msa1218190 | 0.805911 | 1.062098e-49 | -8.615850e-47 |
| Msa1131770 | Msa1223960 | 0.811952 | 5.410578e-51 | -8.615850e-47 |
| Msa1131770 | Msa1246820 | 0.861189 | 1.222086e-63 | -8.615850e-47 |
| Msa1131770 | Msa1263110 | 0.815702 | 8.074476e-52 | -8.615850e-47 |
| Msa1131770 | Msa1386980 | 0.811156 | 8.060251e-51 | -8.615850e-47 |
| Msa1131770 | Msa1458270 | 0.804601 | 1.997750e-49 | -8.615850e-47 |
| Msa0484410 | Msa1131770 | 0.805621 | 1.222111e-49 | -8.615850e-47 |
| Msa0509520 | Msa1131770 | 0.802639 | 5.100117e-49 | -8.615850e-47 |
| Msa0538650 | Msa1131770 | 0.806111 | 9.642067e-50 | -8.615850e-47 |
| Msa0565700 | Msa1131770 | 0.800319 | 1.523735e-48 | -8.615850e-47 |
| Msa0869660 | Msa1131770 | 0.802439 | 5.607838e-49 | -8.615850e-47 |
| Msa0871420 | Msa1131770 | 0.800919 | 1.149827e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1131770 | MtrunA17_Chr8g0361451 | 90.306 | 196 | 10 | 2 | 3 | 198 | 17 | 203 | 3.76e-122 | 343 |
| Msa1131770 | MtrunA17_Chr2g0318961 | 82.143 | 196 | 26 | 2 | 3 | 198 | 17 | 203 | 6.14e-112 | 318 |
| Msa1131770 | MtrunA17_Chr4g0048841 | 75.130 | 193 | 39 | 2 | 3 | 195 | 52 | 235 | 7.21e-98 | 283 |
| Msa1131770 | MtrunA17_Chr2g0280641 | 67.876 | 193 | 53 | 2 | 3 | 195 | 17 | 200 | 3.53e-87 | 255 |
| Msa1131770 | MtrunA17_Chr5g0429671 | 63.542 | 192 | 60 | 3 | 5 | 195 | 20 | 202 | 1.07e-81 | 241 |
| Msa1131770 | MtrunA17_Chr4g0034601 | 60.104 | 193 | 67 | 3 | 3 | 194 | 65 | 248 | 2.52e-72 | 219 |
| Msa1131770 | MtrunA17_Chr8g0361461 | 86.066 | 122 | 15 | 1 | 77 | 198 | 1 | 120 | 2.25e-68 | 204 |
| Msa1131770 | MtrunA17_Chr5g0403681 | 54.592 | 196 | 79 | 3 | 3 | 197 | 66 | 252 | 1.81e-67 | 207 |
| Msa1131770 | MtrunA17_Chr4g0048831 | 75.630 | 119 | 23 | 2 | 77 | 195 | 1 | 113 | 6.47e-57 | 175 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1131770 | AT5G54500.1 | 79.275 | 193 | 31 | 2 | 3 | 195 | 17 | 200 | 1.15e-105 | 302 |
| Msa1131770 | AT4G27270.3 | 77.720 | 193 | 34 | 2 | 3 | 195 | 6 | 189 | 4.19e-104 | 298 |
| Msa1131770 | AT4G27270.2 | 77.720 | 193 | 34 | 2 | 3 | 195 | 6 | 189 | 4.19e-104 | 298 |
| Msa1131770 | AT4G27270.1 | 77.720 | 193 | 34 | 2 | 3 | 195 | 17 | 200 | 4.27e-104 | 298 |
| Msa1131770 | AT4G27270.4 | 81.818 | 154 | 26 | 1 | 45 | 198 | 1 | 152 | 6.86e-88 | 255 |
| Msa1131770 | AT5G54500.2 | 66.316 | 190 | 47 | 4 | 3 | 192 | 17 | 189 | 1.50e-77 | 232 |
| Msa1131770 | AT5G58800.1 | 58.462 | 195 | 71 | 3 | 3 | 196 | 18 | 203 | 9.76e-75 | 224 |
| Msa1131770 | AT5G58800.2 | 58.462 | 195 | 71 | 3 | 3 | 196 | 18 | 203 | 9.76e-75 | 224 |
| Msa1131770 | AT4G36750.1 | 60.000 | 195 | 68 | 3 | 3 | 196 | 87 | 272 | 1.73e-74 | 226 |
Find 62 sgRNAs with CRISPR-Local
Find 187 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATATTTATGTTGAGAAATTT+TGG | 0.130702 | 7_3:-84343138 | Msa1131770:intron |
| ACCTCTTCTGGCAATATTTC+TGG | 0.154554 | 7_3:+84343744 | None:intergenic |
| AATGATTGGTACATCACTTT+TGG | 0.233841 | 7_3:+84343698 | None:intergenic |
| TTTGGATTTCCAACAAGATT+TGG | 0.260288 | 7_3:-84343639 | Msa1131770:CDS |
| TTGGCCACCGCCTTGGGAAC+TGG | 0.307650 | 7_3:+84343518 | None:intergenic |
| GGAATGCTATTTGTTCCAAT+TGG | 0.311832 | 7_3:-84343068 | Msa1131770:CDS |
| CACCTTCAGTTAGTTCATTC+GGG | 0.339232 | 7_3:+84343673 | None:intergenic |
| GTTCCAATTGGGTATACATT+TGG | 0.346928 | 7_3:-84343056 | Msa1131770:CDS |
| TCACCTTCAGTTAGTTCATT+CGG | 0.361037 | 7_3:+84343672 | None:intergenic |
| CTTGAGTTTCTTTGTGATTG+TGG | 0.375549 | 7_3:+84342902 | None:intergenic |
| AGTCTCTTGGCCACCGCCTT+GGG | 0.379897 | 7_3:+84343512 | None:intergenic |
| TGGAAAACACAACAGCTTGC+AGG | 0.385865 | 7_3:-84343567 | Msa1131770:CDS |
| TATACATGCCTGCCATAGTT+TGG | 0.402235 | 7_3:+84345404 | None:intergenic |
| GAATGCTATTTGTTCCAATT+GGG | 0.403516 | 7_3:-84343067 | Msa1131770:CDS |
| TGTTCCAACTCAAGCTTAGT+TGG | 0.407575 | 7_3:+84342951 | None:intergenic |
| TCGATGCAACTGGAGGTCTA+TGG | 0.419239 | 7_3:-84343587 | Msa1131770:CDS |
| TAGTCTCTTGGCCACCGCCT+TGG | 0.422756 | 7_3:+84343511 | None:intergenic |
| ACTGGTGCTGTAGAAGATTC+CGG | 0.424333 | 7_3:+84343536 | None:intergenic |
| AGTTCATTCGGGATAATGAT+TGG | 0.424986 | 7_3:+84343684 | None:intergenic |
| GGTGGAAGTCCATATGGTTC+AGG | 0.428735 | 7_3:-84343002 | Msa1131770:CDS |
| GCCATCATTCCAAATCTTGT+TGG | 0.428775 | 7_3:+84343630 | None:intergenic |
| TCCAACAAGATTTGGAATGA+TGG | 0.429962 | 7_3:-84343631 | Msa1131770:CDS |
| AAAGCCTTTCTCGATGCAAC+TGG | 0.431984 | 7_3:-84343597 | Msa1131770:CDS |
| AAAGGGGCAGATTCAGTAGA+AGG | 0.443622 | 7_3:-84345435 | Msa1131770:CDS |
| GCTCACTGCTATTACTCAAT+TGG | 0.453952 | 7_3:-84343099 | Msa1131770:CDS |
| TAGCAGAAGAAATAAAGAAA+GGG | 0.463523 | 7_3:-84345452 | Msa1131770:CDS |
| GTGAAAGGTGGAAGTCCATA+TGG | 0.471477 | 7_3:-84343008 | Msa1131770:CDS |
| GCACCAAATGTATACCCAAT+TGG | 0.472027 | 7_3:+84343053 | None:intergenic |
| AATTTCAATATTATTATGGC+AGG | 0.476120 | 7_3:-84345506 | None:intergenic |
| GCATATGTTCCTGAACCATA+TGG | 0.493129 | 7_3:+84342993 | None:intergenic |
| ATCTTACCAAGTACCTCTTC+TGG | 0.494196 | 7_3:+84343732 | None:intergenic |
| TTGAGTAATAGCAGTGAGCC+TGG | 0.494427 | 7_3:+84343103 | None:intergenic |
| ATTGGGTATACATTTGGTGC+TGG | 0.497066 | 7_3:-84343050 | Msa1131770:CDS |
| CTAGCAGAAGAAATAAAGAA+AGG | 0.502855 | 7_3:-84345453 | Msa1131770:CDS |
| ACCTCCAGTTGCATCGAGAA+AGG | 0.515380 | 7_3:+84343593 | None:intergenic |
| ATTACTCAATTGGTGCATCA+TGG | 0.518479 | 7_3:-84343089 | Msa1131770:CDS |
| TGTTGAGGCCAAACTATGGC+AGG | 0.519496 | 7_3:-84345412 | Msa1131770:CDS |
| CAGCTTGCAGGGAAGCCTGC+CGG | 0.531216 | 7_3:-84343555 | Msa1131770:CDS |
| GGAAAACACAACAGCTTGCA+GGG | 0.531609 | 7_3:-84343566 | Msa1131770:CDS |
| ATGTCTTGCTGTAGTATACA+TGG | 0.545313 | 7_3:-84344930 | Msa1131770:intron |
| TATGGTTCAGGAACATATGC+TGG | 0.562306 | 7_3:-84342990 | Msa1131770:CDS |
| TTCTACAGCACCAGTTCCCA+AGG | 0.562862 | 7_3:-84343528 | Msa1131770:CDS |
| TGGCAATATACATCCCTTGG+TGG | 0.572606 | 7_3:+84342922 | None:intergenic |
| AAGGTGTTGAGGCCAAACTA+TGG | 0.581500 | 7_3:-84345416 | Msa1131770:CDS |
| ACAGCCAACTAAGCTTGAGT+TGG | 0.584176 | 7_3:-84342955 | Msa1131770:CDS |
| GAGATGGAAGAAGTGAAAGG+TGG | 0.588670 | 7_3:-84343020 | Msa1131770:CDS |
| TCAGGAACATATGCTGGTGA+TGG | 0.599049 | 7_3:-84342984 | Msa1131770:CDS |
| ACCAGAAATATTGCCAGAAG+AGG | 0.599177 | 7_3:-84343745 | Msa1131770:CDS |
| TGGAACAAGCATTCCACCAA+GGG | 0.605202 | 7_3:-84342935 | Msa1131770:CDS |
| AGCAGAAGAAATAAAGAAAG+GGG | 0.609931 | 7_3:-84345451 | Msa1131770:CDS |
| ATCCCGAATGAACTAACTGA+AGG | 0.610161 | 7_3:-84343675 | Msa1131770:CDS |
| GTGCTGTAGAAGATTCCGGC+AGG | 0.618731 | 7_3:+84343540 | None:intergenic |
| GCCTTTCTCGATGCAACTGG+AGG | 0.622678 | 7_3:-84343594 | Msa1131770:CDS |
| TGGTGCTGGAATGTTTGAGA+TGG | 0.623605 | 7_3:-84343036 | Msa1131770:CDS |
| CACAATCACAAAGAAACTCA+AGG | 0.627466 | 7_3:-84342901 | Msa1131770:CDS |
| TTGTGGCAATATACATCCCT+TGG | 0.635784 | 7_3:+84342919 | None:intergenic |
| AATGAACTAACTGAAGGTGA+TGG | 0.639063 | 7_3:-84343669 | Msa1131770:CDS |
| AGATTCAGTAGAAGGTGTTG+AGG | 0.642301 | 7_3:-84345427 | Msa1131770:CDS |
| ATATTGCCAGAAGAGGTACT+TGG | 0.657546 | 7_3:-84343738 | Msa1131770:CDS |
| TTGGAACAAGCATTCCACCA+AGG | 0.678388 | 7_3:-84342936 | Msa1131770:CDS |
| TTTGAGATGGAAGAAGTGAA+AGG | 0.685250 | 7_3:-84343023 | Msa1131770:CDS |
| TACAGCACCAGTTCCCAAGG+CGG | 0.707283 | 7_3:-84343525 | Msa1131770:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTTTATTATTTAAATTT+TGG | - | chr7_3:84344179-84344198 | Msa1131770:intron | 0.0% |
| !!! | AATTTTATTATTTAAATTTT+GGG | - | chr7_3:84344180-84344199 | Msa1131770:intron | 0.0% |
| !! | TAAAATTTATAAAAAGTTGA+AGG | + | chr7_3:84344167-84344186 | None:intergenic | 10.0% |
| !! | AGAAAATAATTACTAAATTT+AGG | - | chr7_3:84344312-84344331 | Msa1131770:intron | 10.0% |
| !! | ACTCTATTATTAATAATTTA+AGG | + | chr7_3:84344375-84344394 | None:intergenic | 10.0% |
| !!! | AAGTTTATTTACTGATTTTT+TGG | - | chr7_3:84343107-84343126 | Msa1131770:CDS | 15.0% |
| !!! | TTTTTTGGATTTTTCTTTTT+TGG | - | chr7_3:84343122-84343141 | Msa1131770:CDS | 15.0% |
| !!! | TTTTTGGATTTTTCTTTTTT+GGG | - | chr7_3:84343123-84343142 | Msa1131770:CDS | 15.0% |
| !!! | TGTCTTTTAATAAAATCTTA+GGG | + | chr7_3:84343166-84343185 | None:intergenic | 15.0% |
| !!! | ATGTCTTTTAATAAAATCTT+AGG | + | chr7_3:84343167-84343186 | None:intergenic | 15.0% |
| !! | CTCAATTATGAAATAATTAA+GGG | - | chr7_3:84344009-84344028 | Msa1131770:intron | 15.0% |
| !!! | TAAATTTTGGGAAATATTAA+CGG | - | chr7_3:84344192-84344211 | Msa1131770:intron | 15.0% |
| !! | ATTAGCAAAATAGAATTTAA+TGG | + | chr7_3:84344561-84344580 | None:intergenic | 15.0% |
| !! | GTTTATAACAAAATTTACAA+TGG | + | chr7_3:84344975-84344994 | None:intergenic | 15.0% |
| !! | TTATAAATTTGTAACATGTT+CGG | + | chr7_3:84345127-84345146 | None:intergenic | 15.0% |
| !!! | ATATTTATGTTGAGAAATTT+TGG | - | chr7_3:84345243-84345262 | Msa1131770:intron | 15.0% |
| !!! | GTCTTTTAATAAAATCTTAG+GGG | + | chr7_3:84343165-84343184 | None:intergenic | 20.0% |
| !! | AGGTATAAAATGTTAGTTAA+CGG | + | chr7_3:84343239-84343258 | None:intergenic | 20.0% |
| !!! | TTTTTCTCAATCAAACAAAA+AGG | + | chr7_3:84343395-84343414 | None:intergenic | 20.0% |
| !!! | AAGCTGTTTTTTTTAATCAA+TGG | + | chr7_3:84343640-84343659 | None:intergenic | 20.0% |
| !! | TTGATTAAAAAAAACAGCTT+CGG | - | chr7_3:84343640-84343659 | Msa1131770:CDS | 20.0% |
| !! | ACATTCTATGAAATTTAACT+CGG | + | chr7_3:84343753-84343772 | None:intergenic | 20.0% |
| !! | AAATCCATTAATTAAGATGA+AGG | - | chr7_3:84343904-84343923 | Msa1131770:intron | 20.0% |
| !! | CCTTAATTATTTCATAATTG+AGG | + | chr7_3:84344011-84344030 | None:intergenic | 20.0% |
| !! | CCTCAATTATGAAATAATTA+AGG | - | chr7_3:84344008-84344027 | Msa1131770:intron | 20.0% |
| !! | AATTATGAAATAATTAAGGG+AGG | - | chr7_3:84344012-84344031 | Msa1131770:intron | 20.0% |
| !!! | GTGTGATTTAGTATATTTTT+TGG | + | chr7_3:84345058-84345077 | None:intergenic | 20.0% |
| !! | CATGTTACAAATTTATAAAC+TGG | - | chr7_3:84345129-84345148 | Msa1131770:intron | 20.0% |
| !!! | TCTTATTTTGATTTGATAGT+TGG | - | chr7_3:84345183-84345202 | Msa1131770:intron | 20.0% |
| !! | GAAATCTAAATCTATTAGAT+CGG | - | chr7_3:84345211-84345230 | Msa1131770:intron | 20.0% |
| ! | TAGCAGAAGAAATAAAGAAA+GGG | - | chr7_3:84342929-84342948 | Msa1131770:CDS | 25.0% |
| !! | TTTTAATAAAATCTTAGGGG+AGG | + | chr7_3:84343162-84343181 | None:intergenic | 25.0% |
| !!! | AATGTTTTTTCCAAACTAGA+GGG | + | chr7_3:84344037-84344056 | None:intergenic | 25.0% |
| !!! | TAATGTTTTTTCCAAACTAG+AGG | + | chr7_3:84344036-84344055 | None:intergenic | 25.0% |
| ! | TTGATGTTAGAGATAAATAG+TGG | + | chr7_3:84343262-84343281 | None:intergenic | 25.0% |
| ! | TTAGCAGAAAAAGCAAATTA+GGG | + | chr7_3:84343293-84343312 | None:intergenic | 25.0% |
| ! | TTTAGCAGAAAAAGCAAATT+AGG | + | chr7_3:84343294-84343313 | None:intergenic | 25.0% |
| !!! | TGCTTTTTCTGCTAAAAATT+AGG | - | chr7_3:84343298-84343317 | Msa1131770:intron | 25.0% |
| !! | TACATACTCTTGATAATTGA+TGG | + | chr7_3:84343531-84343550 | None:intergenic | 25.0% |
| !! | ATGTTTCTACGATGTATAAA+AGG | + | chr7_3:84343568-84343587 | None:intergenic | 25.0% |
| !! | AACTTTAGATTGGTAATTGT+GGG | + | chr7_3:84343617-84343636 | None:intergenic | 25.0% |
| ! | TAATCAATGGAACTTTAGAT+TGG | + | chr7_3:84343627-84343646 | None:intergenic | 25.0% |
| ! | AAAACAAATAGATTTCACTC+AGG | - | chr7_3:84343689-84343708 | Msa1131770:CDS | 25.0% |
| ! | GATGAAGAAATAGTGAAAAT+TGG | - | chr7_3:84343828-84343847 | Msa1131770:intron | 25.0% |
| !!! | TAATGTTTTTTCCAAACTAG+AGG | - | chr7_3:84344036-84344055 | Msa1131770:intron | 25.0% |
| !!! | AATGTTTTTTCCAAACTAGA+GGG | - | chr7_3:84344037-84344056 | Msa1131770:intron | 25.0% |
| !!! | GCAATTTGTTCTTCTTTTTT+TGG | - | chr7_3:84344099-84344118 | Msa1131770:intron | 25.0% |
| ! | CTTTAAACACTTTAAATGCT+TGG | - | chr7_3:84344232-84344251 | Msa1131770:intron | 25.0% |
| ! | TACTTTAATCAATGTCTTGA+TGG | - | chr7_3:84344465-84344484 | Msa1131770:intron | 25.0% |
| !! | TCTATTTTGCTAATATGATC+AGG | - | chr7_3:84344567-84344586 | Msa1131770:intron | 25.0% |
| !! | CTATTTTGCTAATATGATCA+GGG | - | chr7_3:84344568-84344587 | Msa1131770:intron | 25.0% |
| CTAGCAGAAGAAATAAAGAA+AGG | - | chr7_3:84342928-84342947 | Msa1131770:CDS | 30.0% | |
| AGCAGAAGAAATAAAGAAAG+GGG | - | chr7_3:84342930-84342949 | Msa1131770:CDS | 30.0% | |
| ATGATTACTCATTTATCTGC+TGG | + | chr7_3:84343086-84343105 | None:intergenic | 30.0% | |
| !!! | ATGTTTTTTCCAAACTAGAG+GGG | + | chr7_3:84344038-84344057 | None:intergenic | 30.0% |
| ! | AGTTAACGGTGTTAATCTAA+GGG | + | chr7_3:84343225-84343244 | None:intergenic | 30.0% |
| ! | TAGTTAACGGTGTTAATCTA+AGG | + | chr7_3:84343226-84343245 | None:intergenic | 30.0% |
| ATGTTAGAGATAAATAGTGG+AGG | + | chr7_3:84343259-84343278 | None:intergenic | 30.0% | |
| AATGATACCAAATTCATCAC+AGG | - | chr7_3:84343478-84343497 | Msa1131770:intron | 30.0% | |
| ATGTATACCTGTGATGAATT+TGG | + | chr7_3:84343488-84343507 | None:intergenic | 30.0% | |
| GTATAAAAGGAGCTTGAATT+AGG | + | chr7_3:84343555-84343574 | None:intergenic | 30.0% | |
| ! | ACTTTAGATTGGTAATTGTG+GGG | + | chr7_3:84343616-84343635 | None:intergenic | 30.0% |
| ! | GAACTTTAGATTGGTAATTG+TGG | + | chr7_3:84343618-84343637 | None:intergenic | 30.0% |
| TGGAGAAAACATATAAACGA+CGG | - | chr7_3:84343848-84343867 | Msa1131770:intron | 30.0% | |
| CCATCCTTCATCTTAATTAA+TGG | + | chr7_3:84343911-84343930 | None:intergenic | 30.0% | |
| CCATTAATTAAGATGAAGGA+TGG | - | chr7_3:84343908-84343927 | Msa1131770:intron | 30.0% | |
| GTGTGCAGAGTTAAAATTAA+CGG | - | chr7_3:84343960-84343979 | Msa1131770:intron | 30.0% | |
| ! | TTAACGGATGTTAGTATCTA+AGG | - | chr7_3:84343976-84343995 | Msa1131770:intron | 30.0% |
| ! | TAACGGATGTTAGTATCTAA+GGG | - | chr7_3:84343977-84343996 | Msa1131770:intron | 30.0% |
| !!! | ATGTTTTTTCCAAACTAGAG+GGG | - | chr7_3:84344038-84344057 | Msa1131770:intron | 30.0% |
| ! | TGTCTTTTGATAAAACCTCA+GGG | - | chr7_3:84344067-84344086 | Msa1131770:intron | 30.0% |
| !! | AAAGTGTTTAAAGAGTGTTC+CGG | + | chr7_3:84344225-84344244 | None:intergenic | 30.0% |
| ! | TATTATTAAGTGGAGTGCTA+AGG | + | chr7_3:84344495-84344514 | None:intergenic | 30.0% |
| !! | ATGATTGGTACATCACTTTT+GGG | + | chr7_3:84344685-84344704 | None:intergenic | 30.0% |
| ! | AATGATTGGTACATCACTTT+TGG | + | chr7_3:84344686-84344705 | None:intergenic | 30.0% |
| TTTGGATTTCCAACAAGATT+TGG | - | chr7_3:84344742-84344761 | Msa1131770:intron | 30.0% | |
| TAGAGAATATGATCGAGTAA+AGG | + | chr7_3:84344907-84344926 | None:intergenic | 30.0% | |
| ATATTCTCTAGTGCTTTGTA+TGG | - | chr7_3:84344917-84344936 | Msa1131770:intron | 30.0% | |
| TAGTGAGAATTACATAACCA+CGG | - | chr7_3:84344945-84344964 | Msa1131770:intron | 30.0% | |
| !! | TTACAGTGTCATTGTGATTT+TGG | - | chr7_3:84345017-84345036 | Msa1131770:intron | 30.0% |
| ! | TTTTGGATTTAATCTATGCC+AGG | - | chr7_3:84345260-84345279 | Msa1131770:intron | 30.0% |
| ! | GAATGCTATTTGTTCCAATT+GGG | - | chr7_3:84345314-84345333 | Msa1131770:intron | 30.0% |
| TTTGGTGGAAAAGTGATGAA+AGG | + | chr7_3:84343345-84343364 | None:intergenic | 35.0% | |
| ! | TCACATCAGTAGTTGTGTTT+TGG | + | chr7_3:84343363-84343382 | None:intergenic | 35.0% |
| ATGTATACTACAGCAAGACA+TGG | + | chr7_3:84343452-84343471 | None:intergenic | 35.0% | |
| ! | ATGTCTTGCTGTAGTATACA+TGG | - | chr7_3:84343451-84343470 | Msa1131770:intron | 35.0% |
| ! | CTTTAGATTGGTAATTGTGG+GGG | + | chr7_3:84343615-84343634 | None:intergenic | 35.0% |
| TATCCAGTATCATCAAGCAA+TGG | + | chr7_3:84343668-84343687 | None:intergenic | 35.0% | |
| ! | GCATATGAATTTGGAGCATA+AGG | + | chr7_3:84343729-84343748 | None:intergenic | 35.0% |
| !! | TAACTCGGTGCATATGAATT+TGG | + | chr7_3:84343738-84343757 | None:intergenic | 35.0% |
| ! | TTTGCGATTTTCTTGCACAT+TGG | + | chr7_3:84343885-84343904 | None:intergenic | 35.0% |
| !!! | AGATGAAGGGAGAGTTTTTT+TGG | - | chr7_3:84343938-84343957 | Msa1131770:intron | 35.0% |
| AACGGATGTTAGTATCTAAG+GGG | - | chr7_3:84343978-84343997 | Msa1131770:intron | 35.0% | |
| !!! | TGTTTTTTCCAAACTAGAGG+GGG | - | chr7_3:84344039-84344058 | Msa1131770:intron | 35.0% |
| ! | GTGTCTTTTGATAAAACCTC+AGG | - | chr7_3:84344066-84344085 | Msa1131770:intron | 35.0% |
| ! | GTCTTTTGATAAAACCTCAG+GGG | - | chr7_3:84344068-84344087 | Msa1131770:intron | 35.0% |
| ! | AAATATTAACGGAGTGTCTC+CGG | - | chr7_3:84344203-84344222 | Msa1131770:intron | 35.0% |
| GTCTCGCACTTATTATTAAG+TGG | + | chr7_3:84344505-84344524 | None:intergenic | 35.0% | |
| TTTGCTAATATGATCAGGGA+AGG | - | chr7_3:84344572-84344591 | Msa1131770:intron | 35.0% | |
| TGTTGAACATGTATATGAGC+AGG | - | chr7_3:84344612-84344631 | Msa1131770:intron | 35.0% | |
| AGTTCATTCGGGATAATGAT+TGG | + | chr7_3:84344700-84344719 | None:intergenic | 35.0% | |
| TCACCTTCAGTTAGTTCATT+CGG | + | chr7_3:84344712-84344731 | None:intergenic | 35.0% | |
| AATGAACTAACTGAAGGTGA+TGG | - | chr7_3:84344712-84344731 | Msa1131770:intron | 35.0% | |
| ! | TCCAACAAGATTTGGAATGA+TGG | - | chr7_3:84344750-84344769 | Msa1131770:intron | 35.0% |
| ! | AAATTTACAATGGTTAGCCG+TGG | + | chr7_3:84344965-84344984 | None:intergenic | 35.0% |
| ATTACTCAATTGGTGCATCA+TGG | - | chr7_3:84345292-84345311 | Msa1131770:intron | 35.0% | |
| ! | GGAATGCTATTTGTTCCAAT+TGG | - | chr7_3:84345313-84345332 | Msa1131770:intron | 35.0% |
| GTTCCAATTGGGTATACATT+TGG | - | chr7_3:84345325-84345344 | Msa1131770:intron | 35.0% | |
| ! | TTTGAGATGGAAGAAGTGAA+AGG | - | chr7_3:84345358-84345377 | Msa1131770:intron | 35.0% |
| CTTGAGTTTCTTTGTGATTG+TGG | + | chr7_3:84345482-84345501 | None:intergenic | 35.0% | |
| CACAATCACAAAGAAACTCA+AGG | - | chr7_3:84345480-84345499 | Msa1131770:intron | 35.0% | |
| GGCAGGTACTATTCAATGTA+TGG | - | chr7_3:84342892-84342911 | Msa1131770:CDS | 40.0% | |
| !! | AGATTCAGTAGAAGGTGTTG+AGG | - | chr7_3:84342954-84342973 | Msa1131770:CDS | 40.0% |
| TATACATGCCTGCCATAGTT+TGG | + | chr7_3:84342980-84342999 | None:intergenic | 40.0% | |
| ! | GCTTTGGACTGAATTAGTCT+TGG | + | chr7_3:84343047-84343066 | None:intergenic | 40.0% |
| ACTAATTCAGTCCAAAGCAG+AGG | - | chr7_3:84343049-84343068 | Msa1131770:CDS | 40.0% | |
| ATTTATCTGCTGGAGAGGAA+TGG | + | chr7_3:84343076-84343095 | None:intergenic | 40.0% | |
| TACTCATTTATCTGCTGGAG+AGG | + | chr7_3:84343081-84343100 | None:intergenic | 40.0% | |
| ! | TAACGGTGTTAATCTAAGGG+TGG | + | chr7_3:84343222-84343241 | None:intergenic | 40.0% |
| TGGAAAAGTGATGAAAGGTC+GGG | + | chr7_3:84343340-84343359 | None:intergenic | 40.0% | |
| GTGGAAAAGTGATGAAAGGT+CGG | + | chr7_3:84343341-84343360 | None:intergenic | 40.0% | |
| !! | CATCAGTAGTTGTGTTTTGG+TGG | + | chr7_3:84343360-84343379 | None:intergenic | 40.0% |
| ! | GTACCATTGCTTGATGATAC+TGG | - | chr7_3:84343662-84343681 | Msa1131770:CDS | 40.0% |
| AGGATGGTGATTGAAGATGA+AGG | - | chr7_3:84343924-84343943 | Msa1131770:intron | 40.0% | |
| GGATGGTGATTGAAGATGAA+GGG | - | chr7_3:84343925-84343944 | Msa1131770:intron | 40.0% | |
| ACGGATGTTAGTATCTAAGG+GGG | - | chr7_3:84343979-84343998 | Msa1131770:intron | 40.0% | |
| !!! | GTTTTTTCCAAACTAGAGGG+GGG | - | chr7_3:84344040-84344059 | Msa1131770:intron | 40.0% |
| ! | TTTTGATAAAACCTCAGGGG+AGG | - | chr7_3:84344071-84344090 | Msa1131770:intron | 40.0% |
| TAAGCGCGAGAAAGAATTAG+CGG | - | chr7_3:84344128-84344147 | Msa1131770:intron | 40.0% | |
| !! | TAGGATGCTTAAAGAGTGCT+CGG | - | chr7_3:84344331-84344350 | Msa1131770:intron | 40.0% |
| ACCAGAAATATTGCCAGAAG+AGG | - | chr7_3:84344636-84344655 | Msa1131770:intron | 40.0% | |
| ACCTCTTCTGGCAATATTTC+TGG | + | chr7_3:84344640-84344659 | None:intergenic | 40.0% | |
| !! | ATATTGCCAGAAGAGGTACT+TGG | - | chr7_3:84344643-84344662 | Msa1131770:intron | 40.0% |
| ATCTTACCAAGTACCTCTTC+TGG | + | chr7_3:84344652-84344671 | None:intergenic | 40.0% | |
| !! | ATTGGTACATCACTTTTGGG+TGG | + | chr7_3:84344682-84344701 | None:intergenic | 40.0% |
| ATCCCGAATGAACTAACTGA+AGG | - | chr7_3:84344706-84344725 | Msa1131770:intron | 40.0% | |
| CACCTTCAGTTAGTTCATTC+GGG | + | chr7_3:84344711-84344730 | None:intergenic | 40.0% | |
| !!! | GAAGGTGATGGTTTTGTCTT+TGG | - | chr7_3:84344724-84344743 | Msa1131770:intron | 40.0% |
| GCCATCATTCCAAATCTTGT+TGG | + | chr7_3:84344754-84344773 | None:intergenic | 40.0% | |
| ! | GGTCTAATCTTTTGACCAGA+TGG | + | chr7_3:84345106-84345125 | None:intergenic | 40.0% |
| GCTCACTGCTATTACTCAAT+TGG | - | chr7_3:84345282-84345301 | Msa1131770:intron | 40.0% | |
| GCACCAAATGTATACCCAAT+TGG | + | chr7_3:84345331-84345350 | None:intergenic | 40.0% | |
| !! | ATTGGGTATACATTTGGTGC+TGG | - | chr7_3:84345331-84345350 | Msa1131770:intron | 40.0% |
| GCATATGTTCCTGAACCATA+TGG | + | chr7_3:84345391-84345410 | None:intergenic | 40.0% | |
| TATGGTTCAGGAACATATGC+TGG | - | chr7_3:84345391-84345410 | Msa1131770:intron | 40.0% | |
| TGTTCCAACTCAAGCTTAGT+TGG | + | chr7_3:84345433-84345452 | None:intergenic | 40.0% | |
| TTGTGGCAATATACATCCCT+TGG | + | chr7_3:84345465-84345484 | None:intergenic | 40.0% | |
| AAAGGGGCAGATTCAGTAGA+AGG | - | chr7_3:84342946-84342965 | Msa1131770:CDS | 45.0% | |
| !! | AAGGTGTTGAGGCCAAACTA+TGG | - | chr7_3:84342965-84342984 | Msa1131770:CDS | 45.0% |
| CATTCACATCCCCTCTAGTT+TGG | - | chr7_3:84343184-84343203 | Msa1131770:intron | 45.0% | |
| GGAAAAGTGATGAAAGGTCG+GGG | + | chr7_3:84343339-84343358 | None:intergenic | 45.0% | |
| !! | AGGATGCTTAAAGAGTGCTC+GGG | - | chr7_3:84344332-84344351 | Msa1131770:intron | 45.0% |
| AGACTCACACTCTACTAAGG+TGG | - | chr7_3:84344521-84344540 | Msa1131770:intron | 45.0% | |
| CACTCTACTAAGGTGGTGAA+AGG | - | chr7_3:84344528-84344547 | Msa1131770:intron | 45.0% | |
| AAAGCCTTTCTCGATGCAAC+TGG | - | chr7_3:84344784-84344803 | Msa1131770:intron | 45.0% | |
| TGGAAAACACAACAGCTTGC+AGG | - | chr7_3:84344814-84344833 | Msa1131770:intron | 45.0% | |
| GGAAAACACAACAGCTTGCA+GGG | - | chr7_3:84344815-84344834 | Msa1131770:intron | 45.0% | |
| !! | ACTGGTGCTGTAGAAGATTC+CGG | + | chr7_3:84344848-84344867 | None:intergenic | 45.0% |
| ! | ACACATTTGACGCATCGACA+CGG | - | chr7_3:84345074-84345093 | Msa1131770:intron | 45.0% |
| TTGAGTAATAGCAGTGAGCC+TGG | + | chr7_3:84345281-84345300 | None:intergenic | 45.0% | |
| ! | TGGTGCTGGAATGTTTGAGA+TGG | - | chr7_3:84345345-84345364 | Msa1131770:intron | 45.0% |
| GAGATGGAAGAAGTGAAAGG+TGG | - | chr7_3:84345361-84345380 | Msa1131770:intron | 45.0% | |
| GTGAAAGGTGGAAGTCCATA+TGG | - | chr7_3:84345373-84345392 | Msa1131770:intron | 45.0% | |
| TCAGGAACATATGCTGGTGA+TGG | - | chr7_3:84345397-84345416 | Msa1131770:intron | 45.0% | |
| ACAGCCAACTAAGCTTGAGT+TGG | - | chr7_3:84345426-84345445 | Msa1131770:CDS | 45.0% | |
| TTGGAACAAGCATTCCACCA+AGG | - | chr7_3:84345445-84345464 | Msa1131770:CDS | 45.0% | |
| TGGAACAAGCATTCCACCAA+GGG | - | chr7_3:84345446-84345465 | Msa1131770:CDS | 45.0% | |
| TGGCAATATACATCCCTTGG+TGG | + | chr7_3:84345462-84345481 | None:intergenic | 45.0% | |
| TGTTGAGGCCAAACTATGGC+AGG | - | chr7_3:84342969-84342988 | Msa1131770:CDS | 50.0% | |
| AGAGGAATGGACCTCTGCTT+TGG | + | chr7_3:84343063-84343082 | None:intergenic | 50.0% | |
| GCGAGACTCACACTCTACTA+AGG | - | chr7_3:84344518-84344537 | Msa1131770:intron | 50.0% | |
| ACCTCCAGTTGCATCGAGAA+AGG | + | chr7_3:84344791-84344810 | None:intergenic | 50.0% | |
| TCGATGCAACTGGAGGTCTA+TGG | - | chr7_3:84344794-84344813 | Msa1131770:intron | 50.0% | |
| TTCTACAGCACCAGTTCCCA+AGG | - | chr7_3:84344853-84344872 | Msa1131770:intron | 50.0% | |
| GCTCTTACGCTGTAGTCTCT+TGG | + | chr7_3:84344885-84344904 | None:intergenic | 50.0% | |
| TCGACACGGTCTTTACCATC+TGG | - | chr7_3:84345088-84345107 | Msa1131770:intron | 50.0% | |
| GGTGGAAGTCCATATGGTTC+AGG | - | chr7_3:84345379-84345398 | Msa1131770:intron | 50.0% | |
| ACACACACCCCCCTCTAGTT+TGG | + | chr7_3:84344050-84344069 | None:intergenic | 55.0% | |
| AATTGCACTCACCTCCCCTG+AGG | + | chr7_3:84344085-84344104 | None:intergenic | 55.0% | |
| GCCTTTCTCGATGCAACTGG+AGG | - | chr7_3:84344787-84344806 | Msa1131770:intron | 55.0% | |
| GTGCTGTAGAAGATTCCGGC+AGG | + | chr7_3:84344844-84344863 | None:intergenic | 55.0% | |
| TACAGCACCAGTTCCCAAGG+CGG | - | chr7_3:84344856-84344875 | Msa1131770:intron | 55.0% | |
| AGTCTCTTGGCCACCGCCTT+GGG | + | chr7_3:84344872-84344891 | None:intergenic | 60.0% | |
| TAGTCTCTTGGCCACCGCCT+TGG | + | chr7_3:84344873-84344892 | None:intergenic | 60.0% | |
| CAGCTTGCAGGGAAGCCTGC+CGG | - | chr7_3:84344826-84344845 | Msa1131770:intron | 65.0% | |
| AGCACCAGTTCCCAAGGCGG+TGG | - | chr7_3:84344859-84344878 | Msa1131770:intron | 65.0% | |
| TTGGCCACCGCCTTGGGAAC+TGG | + | chr7_3:84344866-84344885 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 84342890 | 84345513 | 84342890 | ID=Msa1131770;Name=Msa1131770 |
| chr7_3 | mRNA | 84342890 | 84345513 | 84342890 | ID=Msa1131770-mRNA-1;Parent=Msa1131770;Name=Msa1131770-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|0|0|0.66|1|1|6|0|198 |
| chr7_3 | exon | 84345507 | 84345513 | 84345507 | ID=Msa1131770-mRNA-1:exon:25141;Parent=Msa1131770-mRNA-1 |
| chr7_3 | exon | 84345409 | 84345480 | 84345409 | ID=Msa1131770-mRNA-1:exon:25140;Parent=Msa1131770-mRNA-1 |
| chr7_3 | exon | 84344931 | 84344938 | 84344931 | ID=Msa1131770-mRNA-1:exon:25139;Parent=Msa1131770-mRNA-1 |
| chr7_3 | exon | 84343806 | 84343814 | 84343806 | ID=Msa1131770-mRNA-1:exon:25138;Parent=Msa1131770-mRNA-1 |
| chr7_3 | exon | 84343526 | 84343769 | 84343526 | ID=Msa1131770-mRNA-1:exon:25137;Parent=Msa1131770-mRNA-1 |
| chr7_3 | exon | 84342890 | 84343146 | 84342890 | ID=Msa1131770-mRNA-1:exon:25136;Parent=Msa1131770-mRNA-1 |
| chr7_3 | CDS | 84345507 | 84345513 | 84345507 | ID=Msa1131770-mRNA-1:cds;Parent=Msa1131770-mRNA-1 |
| chr7_3 | CDS | 84345409 | 84345480 | 84345409 | ID=Msa1131770-mRNA-1:cds;Parent=Msa1131770-mRNA-1 |
| chr7_3 | CDS | 84344931 | 84344938 | 84344931 | ID=Msa1131770-mRNA-1:cds;Parent=Msa1131770-mRNA-1 |
| chr7_3 | CDS | 84343806 | 84343814 | 84343806 | ID=Msa1131770-mRNA-1:cds;Parent=Msa1131770-mRNA-1 |
| chr7_3 | CDS | 84343526 | 84343769 | 84343526 | ID=Msa1131770-mRNA-1:cds;Parent=Msa1131770-mRNA-1 |
| chr7_3 | CDS | 84342890 | 84343146 | 84342890 | ID=Msa1131770-mRNA-1:cds;Parent=Msa1131770-mRNA-1 |
| Gene Sequence |
| Protein sequence |
