Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
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Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
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Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
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Gene ID | Type | Classification |
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Gene ID | Type | Classification |
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Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa1197420 | Msa1250900 | 0.847165 | 1.374142e-59 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
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Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
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Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
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Find 20 sgRNAs with CRISPR-Local
Find 314 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TAGGGTGAAATGAAGCATTT+TGG | 0.270338 | 8_2:+46638330 | None:intergenic |
CTTCTTTGAGTATTGGGCTT+GGG | 0.368437 | 8_2:+46638353 | None:intergenic |
GCTTCTTTGAGTATTGGGCT+TGG | 0.396597 | 8_2:+46638352 | None:intergenic |
AGAGAGACTCTGAGTAGAAA+AGG | 0.398060 | 8_2:-46638600 | Msa1250900:CDS |
TTCCTTTGTAGTGGCTGCAT+GGG | 0.408759 | 8_2:-46638400 | Msa1250900:intron |
GAAAAGGGAATGCTAGGCTT+AGG | 0.432057 | 8_2:+46638311 | None:intergenic |
ATTCCTTTGTAGTGGCTGCA+TGG | 0.459322 | 8_2:-46638401 | Msa1250900:intron |
TGCTTCGAAAAGGGAATGCT+AGG | 0.499690 | 8_2:+46638305 | None:intergenic |
AAAAGGGAATGCTAGGCTTA+GGG | 0.501721 | 8_2:+46638312 | None:intergenic |
ATTTAGGCGAAATAGATTTG+TGG | 0.527706 | 8_2:+46638278 | None:intergenic |
ATACCTGTGGATAATTCTAC+AGG | 0.534208 | 8_2:-46640104 | Msa1250900:CDS |
TCTTGACAAAACTTCTATAC+CGG | 0.540282 | 8_2:-46638568 | Msa1250900:intron |
GAGAGACTCTGAGTAGAAAA+GGG | 0.545878 | 8_2:-46638599 | Msa1250900:CDS |
TTGAAGAGCTAGTACTAGCA+AGG | 0.602140 | 8_2:-46640148 | Msa1250900:CDS |
ACTGCAGATATGCTTGTCCA+TGG | 0.622489 | 8_2:-46638632 | Msa1250900:intron |
GTCTCTCTCTCTTTCCACCA+TGG | 0.623417 | 8_2:+46638615 | None:intergenic |
AGGTACTGATAACGCAGACA+TGG | 0.642353 | 8_2:-46640084 | Msa1250900:intron |
AATCTGTTTGAAAATACCTG+TGG | 0.649563 | 8_2:-46640117 | Msa1250900:CDS |
GTACCTGTAGAATTATCCAC+AGG | 0.658794 | 8_2:+46640101 | None:intergenic |
GCAGATATGCTTGTCCATGG+TGG | 0.687626 | 8_2:-46638629 | Msa1250900:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTCAATGTTAAAATTGTTTT+AGG | - | chr8_2:46639947-46639966 | Msa1250900:intron | 15.0% |
!!! | CTAATAAGTAATATCTTTTA+AGG | - | chr8_2:46639989-46640008 | Msa1250900:intron | 15.0% |
!!! | TTCAATGTTAAAATTGTTTT+AGG | - | chr8_2:46639947-46639966 | Msa1250900:intron | 15.0% |
!!! | CTAATAAGTAATATCTTTTA+AGG | - | chr8_2:46639989-46640008 | Msa1250900:intron | 15.0% |
!!! | TTCTATCATAAACCATATTT+TGG | - | chr8_2:46638856-46638875 | Msa1250900:intron | 20.0% |
!! | AGATTTAGAGATTAATAAGT+TGG | + | chr8_2:46638883-46638902 | None:intergenic | 20.0% |
!! | ATAATTTATGGTTGAACAAA+AGG | + | chr8_2:46639243-46639262 | None:intergenic | 20.0% |
!! | GATATCTATTTCATAGAAAA+TGG | + | chr8_2:46639373-46639392 | None:intergenic | 20.0% |
!!! | ATATTCATAGAAGTTACTTT+AGG | + | chr8_2:46639425-46639444 | None:intergenic | 20.0% |
!! | CTTCTATGAATATAGTTTAA+CGG | - | chr8_2:46639432-46639451 | Msa1250900:intron | 20.0% |
!!! | TAATCAGAGAAATTTGTTTT+GGG | + | chr8_2:46639625-46639644 | None:intergenic | 20.0% |
!!! | ATAATCAGAGAAATTTGTTT+TGG | + | chr8_2:46639626-46639645 | None:intergenic | 20.0% |
!! | AAGATATTACTTATTAGAAC+AGG | + | chr8_2:46639986-46640005 | None:intergenic | 20.0% |
!!! | TTCTATCATAAACCATATTT+TGG | - | chr8_2:46638856-46638875 | Msa1250900:intron | 20.0% |
!! | AGATTTAGAGATTAATAAGT+TGG | + | chr8_2:46638883-46638902 | None:intergenic | 20.0% |
!! | ATAATTTATGGTTGAACAAA+AGG | + | chr8_2:46639243-46639262 | None:intergenic | 20.0% |
!! | GATATCTATTTCATAGAAAA+TGG | + | chr8_2:46639373-46639392 | None:intergenic | 20.0% |
!!! | ATATTCATAGAAGTTACTTT+AGG | + | chr8_2:46639425-46639444 | None:intergenic | 20.0% |
!! | CTTCTATGAATATAGTTTAA+CGG | - | chr8_2:46639432-46639451 | Msa1250900:intron | 20.0% |
!!! | TAATCAGAGAAATTTGTTTT+GGG | + | chr8_2:46639625-46639644 | None:intergenic | 20.0% |
!!! | ATAATCAGAGAAATTTGTTT+TGG | + | chr8_2:46639626-46639645 | None:intergenic | 20.0% |
!! | AAGATATTACTTATTAGAAC+AGG | + | chr8_2:46639986-46640005 | None:intergenic | 20.0% |
!! | CGGATGTTATTTATAAGAAA+GGG | - | chr8_2:46638283-46638302 | Msa1250900:CDS | 25.0% |
! | TTTGATGTTAAAATGGTTTC+TGG | - | chr8_2:46638346-46638365 | Msa1250900:CDS | 25.0% |
! | TGGTTTATGATAGAAGATTA+TGG | + | chr8_2:46638851-46638870 | None:intergenic | 25.0% |
!! | TAATAAGTTGGACCAAAATA+TGG | + | chr8_2:46638871-46638890 | None:intergenic | 25.0% |
! | TTCAACCATAAATTATGTTG+TGG | - | chr8_2:46639247-46639266 | Msa1250900:intron | 25.0% |
! | TCAACCATAAATTATGTTGT+GGG | - | chr8_2:46639248-46639267 | Msa1250900:intron | 25.0% |
! | TGAAATAGATATCTACACTA+CGG | - | chr8_2:46639380-46639399 | Msa1250900:intron | 25.0% |
!! | TATTTAGATTTGCTTGTACA+TGG | - | chr8_2:46639682-46639701 | Msa1250900:intron | 25.0% |
! | TATAAGTATATAGTTTCCTC+AGG | + | chr8_2:46639748-46639767 | None:intergenic | 25.0% |
! | AAACTATATACTTATAGCCT+TGG | - | chr8_2:46639752-46639771 | Msa1250900:intron | 25.0% |
! | ATATTTGAATAGAGAACTAG+AGG | - | chr8_2:46639795-46639814 | Msa1250900:intron | 25.0% |
! | TATTTGAATAGAGAACTAGA+GGG | - | chr8_2:46639796-46639815 | Msa1250900:intron | 25.0% |
! | AAATTGATATACAAGACTAC+CGG | + | chr8_2:46640220-46640239 | None:intergenic | 25.0% |
! | TTGTATATCAATTTACTGCT+GGG | - | chr8_2:46640226-46640245 | Msa1250900:intron | 25.0% |
! | CCTATTCATAAAGTAGATTT+GGG | + | chr8_2:46640297-46640316 | None:intergenic | 25.0% |
! | ACCTATTCATAAAGTAGATT+TGG | + | chr8_2:46640298-46640317 | None:intergenic | 25.0% |
! | ACTTTATGAATAGGTTTAGA+AGG | - | chr8_2:46640303-46640322 | Msa1250900:intron | 25.0% |
!! | CGGATGTTATTTATAAGAAA+GGG | - | chr8_2:46638283-46638302 | Msa1250900:CDS | 25.0% |
! | TTTGATGTTAAAATGGTTTC+TGG | - | chr8_2:46638346-46638365 | Msa1250900:CDS | 25.0% |
! | TGGTTTATGATAGAAGATTA+TGG | + | chr8_2:46638851-46638870 | None:intergenic | 25.0% |
!! | TAATAAGTTGGACCAAAATA+TGG | + | chr8_2:46638871-46638890 | None:intergenic | 25.0% |
! | TTCAACCATAAATTATGTTG+TGG | - | chr8_2:46639247-46639266 | Msa1250900:intron | 25.0% |
! | TCAACCATAAATTATGTTGT+GGG | - | chr8_2:46639248-46639267 | Msa1250900:intron | 25.0% |
! | TGAAATAGATATCTACACTA+CGG | - | chr8_2:46639380-46639399 | Msa1250900:intron | 25.0% |
!! | TATTTAGATTTGCTTGTACA+TGG | - | chr8_2:46639682-46639701 | Msa1250900:intron | 25.0% |
! | TATAAGTATATAGTTTCCTC+AGG | + | chr8_2:46639748-46639767 | None:intergenic | 25.0% |
! | AAACTATATACTTATAGCCT+TGG | - | chr8_2:46639752-46639771 | Msa1250900:intron | 25.0% |
! | ATATTTGAATAGAGAACTAG+AGG | - | chr8_2:46639795-46639814 | Msa1250900:intron | 25.0% |
! | TATTTGAATAGAGAACTAGA+GGG | - | chr8_2:46639796-46639815 | Msa1250900:intron | 25.0% |
! | AAATTGATATACAAGACTAC+CGG | + | chr8_2:46640220-46640239 | None:intergenic | 25.0% |
! | TTGTATATCAATTTACTGCT+GGG | - | chr8_2:46640226-46640245 | Msa1250900:intron | 25.0% |
! | CCTATTCATAAAGTAGATTT+GGG | + | chr8_2:46640297-46640316 | None:intergenic | 25.0% |
! | ACCTATTCATAAAGTAGATT+TGG | + | chr8_2:46640298-46640317 | None:intergenic | 25.0% |
! | ACTTTATGAATAGGTTTAGA+AGG | - | chr8_2:46640303-46640322 | Msa1250900:intron | 25.0% |
! | GCGGATGTTATTTATAAGAA+AGG | - | chr8_2:46638282-46638301 | Msa1250900:CDS | 30.0% |
GTCTTTGATGTAAATGCATA+TGG | - | chr8_2:46638313-46638332 | Msa1250900:CDS | 30.0% | |
TGATGTAAATGCATATGGTT+TGG | - | chr8_2:46638318-46638337 | Msa1250900:CDS | 30.0% | |
AGAACTAATTAGAAAAGGTG+TGG | + | chr8_2:46638381-46638400 | None:intergenic | 30.0% | |
!!! | ACCTTTTCTAATTAGTTCTG+AGG | - | chr8_2:46638382-46638401 | Msa1250900:CDS | 30.0% |
ACCTCAGAACTAATTAGAAA+AGG | + | chr8_2:46638386-46638405 | None:intergenic | 30.0% | |
AATCTGTTTGAAAATACCTG+TGG | - | chr8_2:46638649-46638668 | Msa1250900:intron | 30.0% | |
ATACTTCCTCATAGATAACA+TGG | - | chr8_2:46639045-46639064 | Msa1250900:intron | 30.0% | |
ATTTATGGTTGAACAAAAGG+AGG | + | chr8_2:46639240-46639259 | None:intergenic | 30.0% | |
AGATCCCACAACATAATTTA+TGG | + | chr8_2:46639255-46639274 | None:intergenic | 30.0% | |
ACAGATGAAAGATAGAAAGA+GGG | + | chr8_2:46639282-46639301 | None:intergenic | 30.0% | |
AACAGATGAAAGATAGAAAG+AGG | + | chr8_2:46639283-46639302 | None:intergenic | 30.0% | |
TCCAACAATAATTTGACTGT+GGG | + | chr8_2:46639326-46639345 | None:intergenic | 30.0% | |
TTCCAACAATAATTTGACTG+TGG | + | chr8_2:46639327-46639346 | None:intergenic | 30.0% | |
ATTTCCCAAATGAAACAAGT+CGG | + | chr8_2:46639661-46639680 | None:intergenic | 30.0% | |
TAACAATCATTTAACTCCTG+AGG | - | chr8_2:46639729-46639748 | Msa1250900:intron | 30.0% | |
!! | AAAAAATGGATTGATGTCCA+AGG | + | chr8_2:46639772-46639791 | None:intergenic | 30.0% |
! | AAATGCTAACCATTTGAGAT+AGG | + | chr8_2:46639837-46639856 | None:intergenic | 30.0% |
TATGTTGAATGCAGATGAAT+AGG | - | chr8_2:46639919-46639938 | Msa1250900:intron | 30.0% | |
ACGTTAACACATGTCATATT+AGG | - | chr8_2:46640013-46640032 | Msa1250900:intron | 30.0% | |
TCTTGACAAAACTTCTATAC+CGG | - | chr8_2:46640198-46640217 | Msa1250900:intron | 30.0% | |
CTTGTATATCAATTTACTGC+TGG | - | chr8_2:46640225-46640244 | Msa1250900:intron | 30.0% | |
TGTATATCAATTTACTGCTG+GGG | - | chr8_2:46640227-46640246 | Msa1250900:intron | 30.0% | |
TTCATAAAGTAGATTTGGGA+AGG | + | chr8_2:46640293-46640312 | None:intergenic | 30.0% | |
CCCAAATCTACTTTATGAAT+AGG | - | chr8_2:46640294-46640313 | Msa1250900:intron | 30.0% | |
!!! | TTTTGGCTTCTTTGAGTATT+GGG | + | chr8_2:46640422-46640441 | None:intergenic | 30.0% |
!!! | ATTTTGGCTTCTTTGAGTAT+TGG | + | chr8_2:46640423-46640442 | None:intergenic | 30.0% |
! | GCGGATGTTATTTATAAGAA+AGG | - | chr8_2:46638282-46638301 | Msa1250900:CDS | 30.0% |
GTCTTTGATGTAAATGCATA+TGG | - | chr8_2:46638313-46638332 | Msa1250900:CDS | 30.0% | |
TGATGTAAATGCATATGGTT+TGG | - | chr8_2:46638318-46638337 | Msa1250900:CDS | 30.0% | |
AGAACTAATTAGAAAAGGTG+TGG | + | chr8_2:46638381-46638400 | None:intergenic | 30.0% | |
!!! | ACCTTTTCTAATTAGTTCTG+AGG | - | chr8_2:46638382-46638401 | Msa1250900:CDS | 30.0% |
ACCTCAGAACTAATTAGAAA+AGG | + | chr8_2:46638386-46638405 | None:intergenic | 30.0% | |
AATCTGTTTGAAAATACCTG+TGG | - | chr8_2:46638649-46638668 | Msa1250900:intron | 30.0% | |
ATACTTCCTCATAGATAACA+TGG | - | chr8_2:46639045-46639064 | Msa1250900:intron | 30.0% | |
ATTTATGGTTGAACAAAAGG+AGG | + | chr8_2:46639240-46639259 | None:intergenic | 30.0% | |
AGATCCCACAACATAATTTA+TGG | + | chr8_2:46639255-46639274 | None:intergenic | 30.0% | |
ACAGATGAAAGATAGAAAGA+GGG | + | chr8_2:46639282-46639301 | None:intergenic | 30.0% | |
AACAGATGAAAGATAGAAAG+AGG | + | chr8_2:46639283-46639302 | None:intergenic | 30.0% | |
TCCAACAATAATTTGACTGT+GGG | + | chr8_2:46639326-46639345 | None:intergenic | 30.0% | |
TTCCAACAATAATTTGACTG+TGG | + | chr8_2:46639327-46639346 | None:intergenic | 30.0% | |
ATTTCCCAAATGAAACAAGT+CGG | + | chr8_2:46639661-46639680 | None:intergenic | 30.0% | |
TAACAATCATTTAACTCCTG+AGG | - | chr8_2:46639729-46639748 | Msa1250900:intron | 30.0% | |
!! | AAAAAATGGATTGATGTCCA+AGG | + | chr8_2:46639772-46639791 | None:intergenic | 30.0% |
! | AAATGCTAACCATTTGAGAT+AGG | + | chr8_2:46639837-46639856 | None:intergenic | 30.0% |
TATGTTGAATGCAGATGAAT+AGG | - | chr8_2:46639919-46639938 | Msa1250900:intron | 30.0% | |
ACGTTAACACATGTCATATT+AGG | - | chr8_2:46640013-46640032 | Msa1250900:intron | 30.0% | |
TCTTGACAAAACTTCTATAC+CGG | - | chr8_2:46640198-46640217 | Msa1250900:intron | 30.0% | |
CTTGTATATCAATTTACTGC+TGG | - | chr8_2:46640225-46640244 | Msa1250900:intron | 30.0% | |
TGTATATCAATTTACTGCTG+GGG | - | chr8_2:46640227-46640246 | Msa1250900:intron | 30.0% | |
TTCATAAAGTAGATTTGGGA+AGG | + | chr8_2:46640293-46640312 | None:intergenic | 30.0% | |
CCCAAATCTACTTTATGAAT+AGG | - | chr8_2:46640294-46640313 | Msa1250900:intron | 30.0% | |
!!! | TTTTGGCTTCTTTGAGTATT+GGG | + | chr8_2:46640422-46640441 | None:intergenic | 30.0% |
!!! | ATTTTGGCTTCTTTGAGTAT+TGG | + | chr8_2:46640423-46640442 | None:intergenic | 30.0% |
! | TGTAAATGCATATGGTTTGG+AGG | - | chr8_2:46638321-46638340 | Msa1250900:CDS | 35.0% |
! | GTAAATGCATATGGTTTGGA+GGG | - | chr8_2:46638322-46638341 | Msa1250900:CDS | 35.0% |
!! | GGAGGGTTTTGATGTTAAAA+TGG | - | chr8_2:46638339-46638358 | Msa1250900:CDS | 35.0% |
! | TGTTAAAATGGTTTCTGGAG+AGG | - | chr8_2:46638351-46638370 | Msa1250900:CDS | 35.0% |
! | TAGCTTTTAGATCAGACAAC+AGG | - | chr8_2:46638595-46638614 | Msa1250900:CDS | 35.0% |
ATACCTGTGGATAATTCTAC+AGG | - | chr8_2:46638662-46638681 | Msa1250900:intron | 35.0% | |
! | TCACCTTTTTCTCAAACAAG+AGG | + | chr8_2:46638726-46638745 | None:intergenic | 35.0% |
! | AAATGCAGAGTTTCTAAGGA+AGG | + | chr8_2:46638756-46638775 | None:intergenic | 35.0% |
TCCTTAGAAACTCTGCATTT+AGG | - | chr8_2:46638756-46638775 | Msa1250900:intron | 35.0% | |
CCTTAGAAACTCTGCATTTA+GGG | - | chr8_2:46638757-46638776 | Msa1250900:intron | 35.0% | |
GTTTGCAAATTTCACTGAGA+AGG | + | chr8_2:46638999-46639018 | None:intergenic | 35.0% | |
TATGTGTATGTATGTGTGTG+TGG | + | chr8_2:46639028-46639047 | None:intergenic | 35.0% | |
AGGGTAATTTCACAATGACA+CGG | + | chr8_2:46639137-46639156 | None:intergenic | 35.0% | |
TCATTGTGAAATTACCCTTG+CGG | - | chr8_2:46639139-46639158 | Msa1250900:intron | 35.0% | |
CATCAACAAAATCTGTGCAA+AGG | + | chr8_2:46639166-46639185 | None:intergenic | 35.0% | |
AAAACAGAAGAGGTTCACAA+AGG | + | chr8_2:46639192-46639211 | None:intergenic | 35.0% | |
! | TCTGTTTTGTGTCTGAGAAA+AGG | - | chr8_2:46639204-46639223 | Msa1250900:intron | 35.0% |
CAGATGAAAGATAGAAAGAG+GGG | + | chr8_2:46639281-46639300 | None:intergenic | 35.0% | |
TCCCACAGTCAAATTATTGT+TGG | - | chr8_2:46639322-46639341 | Msa1250900:intron | 35.0% | |
GATTTAGATATGCTTGTCCA+TGG | - | chr8_2:46639484-46639503 | Msa1250900:intron | 35.0% | |
AGCGCACAAATTAATGATGT+GGG | + | chr8_2:46639579-46639598 | None:intergenic | 35.0% | |
TAGCGCACAAATTAATGATG+TGG | + | chr8_2:46639580-46639599 | None:intergenic | 35.0% | |
!! | TCATTAATTTGTGCGCTACT+TGG | - | chr8_2:46639582-46639601 | Msa1250900:intron | 35.0% |
TTTCCCAAATGAAACAAGTC+GGG | + | chr8_2:46639660-46639679 | None:intergenic | 35.0% | |
! | TTAGATTTGCTTGTACATGG+TGG | - | chr8_2:46639685-46639704 | Msa1250900:intron | 35.0% |
ACTCACTATCCTATCTCAAA+TGG | - | chr8_2:46639825-46639844 | Msa1250900:intron | 35.0% | |
ACACAGTGACAAGAAATAGA+AGG | + | chr8_2:46639870-46639889 | None:intergenic | 35.0% | |
!!! | TGTCACTGTGTTGTTTTGTT+TGG | - | chr8_2:46639879-46639898 | Msa1250900:intron | 35.0% |
AGACAGCATCTCAGATAATT+TGG | + | chr8_2:46640048-46640067 | None:intergenic | 35.0% | |
ATACTAAACAGAGAGAAGAG+TGG | - | chr8_2:46640254-46640273 | Msa1250900:intron | 35.0% | |
ACTACAAAGGAATAACTCCA+AGG | + | chr8_2:46640358-46640377 | None:intergenic | 35.0% | |
TTGGAGTTATTCCTTTGTAG+TGG | - | chr8_2:46640357-46640376 | Msa1250900:intron | 35.0% | |
!! | TAGGGTGAAATGAAGCATTT+TGG | + | chr8_2:46640439-46640458 | None:intergenic | 35.0% |
! | TGTAAATGCATATGGTTTGG+AGG | - | chr8_2:46638321-46638340 | Msa1250900:CDS | 35.0% |
! | GTAAATGCATATGGTTTGGA+GGG | - | chr8_2:46638322-46638341 | Msa1250900:CDS | 35.0% |
!! | GGAGGGTTTTGATGTTAAAA+TGG | - | chr8_2:46638339-46638358 | Msa1250900:CDS | 35.0% |
! | TGTTAAAATGGTTTCTGGAG+AGG | - | chr8_2:46638351-46638370 | Msa1250900:CDS | 35.0% |
! | TAGCTTTTAGATCAGACAAC+AGG | - | chr8_2:46638595-46638614 | Msa1250900:CDS | 35.0% |
ATACCTGTGGATAATTCTAC+AGG | - | chr8_2:46638662-46638681 | Msa1250900:intron | 35.0% | |
! | TCACCTTTTTCTCAAACAAG+AGG | + | chr8_2:46638726-46638745 | None:intergenic | 35.0% |
! | AAATGCAGAGTTTCTAAGGA+AGG | + | chr8_2:46638756-46638775 | None:intergenic | 35.0% |
TCCTTAGAAACTCTGCATTT+AGG | - | chr8_2:46638756-46638775 | Msa1250900:intron | 35.0% | |
CCTTAGAAACTCTGCATTTA+GGG | - | chr8_2:46638757-46638776 | Msa1250900:intron | 35.0% | |
GTTTGCAAATTTCACTGAGA+AGG | + | chr8_2:46638999-46639018 | None:intergenic | 35.0% | |
TATGTGTATGTATGTGTGTG+TGG | + | chr8_2:46639028-46639047 | None:intergenic | 35.0% | |
AGGGTAATTTCACAATGACA+CGG | + | chr8_2:46639137-46639156 | None:intergenic | 35.0% | |
TCATTGTGAAATTACCCTTG+CGG | - | chr8_2:46639139-46639158 | Msa1250900:intron | 35.0% | |
CATCAACAAAATCTGTGCAA+AGG | + | chr8_2:46639166-46639185 | None:intergenic | 35.0% | |
AAAACAGAAGAGGTTCACAA+AGG | + | chr8_2:46639192-46639211 | None:intergenic | 35.0% | |
! | TCTGTTTTGTGTCTGAGAAA+AGG | - | chr8_2:46639204-46639223 | Msa1250900:intron | 35.0% |
CAGATGAAAGATAGAAAGAG+GGG | + | chr8_2:46639281-46639300 | None:intergenic | 35.0% | |
TCCCACAGTCAAATTATTGT+TGG | - | chr8_2:46639322-46639341 | Msa1250900:intron | 35.0% | |
GATTTAGATATGCTTGTCCA+TGG | - | chr8_2:46639484-46639503 | Msa1250900:intron | 35.0% | |
AGCGCACAAATTAATGATGT+GGG | + | chr8_2:46639579-46639598 | None:intergenic | 35.0% | |
TAGCGCACAAATTAATGATG+TGG | + | chr8_2:46639580-46639599 | None:intergenic | 35.0% | |
!! | TCATTAATTTGTGCGCTACT+TGG | - | chr8_2:46639582-46639601 | Msa1250900:intron | 35.0% |
TTTCCCAAATGAAACAAGTC+GGG | + | chr8_2:46639660-46639679 | None:intergenic | 35.0% | |
! | TTAGATTTGCTTGTACATGG+TGG | - | chr8_2:46639685-46639704 | Msa1250900:intron | 35.0% |
ACTCACTATCCTATCTCAAA+TGG | - | chr8_2:46639825-46639844 | Msa1250900:intron | 35.0% | |
ACACAGTGACAAGAAATAGA+AGG | + | chr8_2:46639870-46639889 | None:intergenic | 35.0% | |
!!! | TGTCACTGTGTTGTTTTGTT+TGG | - | chr8_2:46639879-46639898 | Msa1250900:intron | 35.0% |
AGACAGCATCTCAGATAATT+TGG | + | chr8_2:46640048-46640067 | None:intergenic | 35.0% | |
ATACTAAACAGAGAGAAGAG+TGG | - | chr8_2:46640254-46640273 | Msa1250900:intron | 35.0% | |
ACTACAAAGGAATAACTCCA+AGG | + | chr8_2:46640358-46640377 | None:intergenic | 35.0% | |
TTGGAGTTATTCCTTTGTAG+TGG | - | chr8_2:46640357-46640376 | Msa1250900:intron | 35.0% | |
!! | TAGGGTGAAATGAAGCATTT+TGG | + | chr8_2:46640439-46640458 | None:intergenic | 35.0% |
TTGAAGAGCTAGTACTAGCA+AGG | - | chr8_2:46638618-46638637 | Msa1250900:CDS | 40.0% | |
GTACCTGTAGAATTATCCAC+AGG | + | chr8_2:46638668-46638687 | None:intergenic | 40.0% | |
! | CTGCCTCTTGTTTGAGAAAA+AGG | - | chr8_2:46638720-46638739 | Msa1250900:intron | 40.0% |
CCCTAAATGCAGAGTTTCTA+AGG | + | chr8_2:46638760-46638779 | None:intergenic | 40.0% | |
TCACTGCCATGTTATCTATG+AGG | + | chr8_2:46639054-46639073 | None:intergenic | 40.0% | |
! | ATGTGTGAAGAGTTGTTTCC+TGG | - | chr8_2:46639101-46639120 | Msa1250900:intron | 40.0% |
TCTCAGACACAAAACAGAAG+AGG | + | chr8_2:46639202-46639221 | None:intergenic | 40.0% | |
ACTACGGATTTCATGTGAAG+TGG | - | chr8_2:46639396-46639415 | Msa1250900:intron | 40.0% | |
TTAGATATGCTTGTCCATGG+TGG | - | chr8_2:46639487-46639506 | Msa1250900:intron | 40.0% | |
! | CAGTTTTTCTCTTTCCACCA+TGG | + | chr8_2:46639504-46639523 | None:intergenic | 40.0% |
TCATAGTGCAGGATAAGGAA+TGG | + | chr8_2:46639535-46639554 | None:intergenic | 40.0% | |
TGCTATCATAGTGCAGGATA+AGG | + | chr8_2:46639540-46639559 | None:intergenic | 40.0% | |
! | TGTACCCGACTTGTTTCATT+TGG | - | chr8_2:46639653-46639672 | Msa1250900:intron | 40.0% |
! | GTACCCGACTTGTTTCATTT+GGG | - | chr8_2:46639654-46639673 | Msa1250900:intron | 40.0% |
! | TTTGCTTGTACATGGTGGAA+AGG | - | chr8_2:46639690-46639709 | Msa1250900:intron | 40.0% |
! | TTGCTTGTACATGGTGGAAA+GGG | - | chr8_2:46639691-46639710 | Msa1250900:intron | 40.0% |
GAATAGAGAACTAGAGGGTT+TGG | - | chr8_2:46639801-46639820 | Msa1250900:intron | 40.0% | |
GTTGAATGCAGATGAATAGG+AGG | - | chr8_2:46639922-46639941 | Msa1250900:intron | 40.0% | |
AGAGAGACTCTGAGTAGAAA+AGG | - | chr8_2:46640166-46640185 | Msa1250900:intron | 40.0% | |
GAGAGACTCTGAGTAGAAAA+GGG | - | chr8_2:46640167-46640186 | Msa1250900:intron | 40.0% | |
!! | CTTCTTTGAGTATTGGGCTT+GGG | + | chr8_2:46640416-46640435 | None:intergenic | 40.0% |
AAAAGGGAATGCTAGGCTTA+GGG | + | chr8_2:46640457-46640476 | None:intergenic | 40.0% | |
! | TGTGGCTTTTGCTTCGAAAA+GGG | + | chr8_2:46640473-46640492 | None:intergenic | 40.0% |
! | TTGTGGCTTTTGCTTCGAAA+AGG | + | chr8_2:46640474-46640493 | None:intergenic | 40.0% |
TTGAAGAGCTAGTACTAGCA+AGG | - | chr8_2:46638618-46638637 | Msa1250900:CDS | 40.0% | |
GTACCTGTAGAATTATCCAC+AGG | + | chr8_2:46638668-46638687 | None:intergenic | 40.0% | |
! | CTGCCTCTTGTTTGAGAAAA+AGG | - | chr8_2:46638720-46638739 | Msa1250900:intron | 40.0% |
CCCTAAATGCAGAGTTTCTA+AGG | + | chr8_2:46638760-46638779 | None:intergenic | 40.0% | |
TCACTGCCATGTTATCTATG+AGG | + | chr8_2:46639054-46639073 | None:intergenic | 40.0% | |
! | ATGTGTGAAGAGTTGTTTCC+TGG | - | chr8_2:46639101-46639120 | Msa1250900:intron | 40.0% |
TCTCAGACACAAAACAGAAG+AGG | + | chr8_2:46639202-46639221 | None:intergenic | 40.0% | |
ACTACGGATTTCATGTGAAG+TGG | - | chr8_2:46639396-46639415 | Msa1250900:intron | 40.0% | |
TTAGATATGCTTGTCCATGG+TGG | - | chr8_2:46639487-46639506 | Msa1250900:intron | 40.0% | |
! | CAGTTTTTCTCTTTCCACCA+TGG | + | chr8_2:46639504-46639523 | None:intergenic | 40.0% |
TCATAGTGCAGGATAAGGAA+TGG | + | chr8_2:46639535-46639554 | None:intergenic | 40.0% | |
TGCTATCATAGTGCAGGATA+AGG | + | chr8_2:46639540-46639559 | None:intergenic | 40.0% | |
! | TGTACCCGACTTGTTTCATT+TGG | - | chr8_2:46639653-46639672 | Msa1250900:intron | 40.0% |
! | GTACCCGACTTGTTTCATTT+GGG | - | chr8_2:46639654-46639673 | Msa1250900:intron | 40.0% |
! | TTTGCTTGTACATGGTGGAA+AGG | - | chr8_2:46639690-46639709 | Msa1250900:intron | 40.0% |
! | TTGCTTGTACATGGTGGAAA+GGG | - | chr8_2:46639691-46639710 | Msa1250900:intron | 40.0% |
GAATAGAGAACTAGAGGGTT+TGG | - | chr8_2:46639801-46639820 | Msa1250900:intron | 40.0% | |
GTTGAATGCAGATGAATAGG+AGG | - | chr8_2:46639922-46639941 | Msa1250900:intron | 40.0% | |
AGAGAGACTCTGAGTAGAAA+AGG | - | chr8_2:46640166-46640185 | Msa1250900:intron | 40.0% | |
GAGAGACTCTGAGTAGAAAA+GGG | - | chr8_2:46640167-46640186 | Msa1250900:intron | 40.0% | |
!! | CTTCTTTGAGTATTGGGCTT+GGG | + | chr8_2:46640416-46640435 | None:intergenic | 40.0% |
AAAAGGGAATGCTAGGCTTA+GGG | + | chr8_2:46640457-46640476 | None:intergenic | 40.0% | |
! | TGTGGCTTTTGCTTCGAAAA+GGG | + | chr8_2:46640473-46640492 | None:intergenic | 40.0% |
! | TTGTGGCTTTTGCTTCGAAA+AGG | + | chr8_2:46640474-46640493 | None:intergenic | 40.0% |
! | GTTGCTCGATAGAGAGTACA+AGG | - | chr8_2:46638554-46638573 | Msa1250900:intron | 45.0% |
GTACAAGGTGGCTATGATGT+TGG | - | chr8_2:46638569-46638588 | Msa1250900:CDS | 45.0% | |
!! | AGGTACTGATAACGCAGACA+TGG | - | chr8_2:46638682-46638701 | Msa1250900:intron | 45.0% |
! | CAAGCCTTATCCCACTAAGT+GGG | - | chr8_2:46638801-46638820 | Msa1250900:intron | 45.0% |
! | AAGCCTTATCCCACTAAGTG+GGG | - | chr8_2:46638802-46638821 | Msa1250900:intron | 45.0% |
! | ACCTATCTCTCTGAGGATGA+AGG | + | chr8_2:46638929-46638948 | None:intergenic | 45.0% |
TTCATCCTCAGAGAGATAGG+TGG | - | chr8_2:46638928-46638947 | Msa1250900:intron | 45.0% | |
! | TGAAGAGTTGTTTCCTGGTG+AGG | - | chr8_2:46639106-46639125 | Msa1250900:intron | 45.0% |
CACAGATGCTATCATAGTGC+AGG | + | chr8_2:46639546-46639565 | None:intergenic | 45.0% | |
ACTGCAGATATGCTTGTCCA+TGG | - | chr8_2:46640134-46640153 | Msa1250900:CDS | 45.0% | |
ATTCCTTTGTAGTGGCTGCA+TGG | - | chr8_2:46640365-46640384 | Msa1250900:intron | 45.0% | |
TTCCTTTGTAGTGGCTGCAT+GGG | - | chr8_2:46640366-46640385 | Msa1250900:intron | 45.0% | |
!! | GCTTCTTTGAGTATTGGGCT+TGG | + | chr8_2:46640417-46640436 | None:intergenic | 45.0% |
GAAAAGGGAATGCTAGGCTT+AGG | + | chr8_2:46640458-46640477 | None:intergenic | 45.0% | |
TGCTTCGAAAAGGGAATGCT+AGG | + | chr8_2:46640464-46640483 | None:intergenic | 45.0% | |
! | GTTGCTCGATAGAGAGTACA+AGG | - | chr8_2:46638554-46638573 | Msa1250900:intron | 45.0% |
GTACAAGGTGGCTATGATGT+TGG | - | chr8_2:46638569-46638588 | Msa1250900:CDS | 45.0% | |
!! | AGGTACTGATAACGCAGACA+TGG | - | chr8_2:46638682-46638701 | Msa1250900:intron | 45.0% |
! | CAAGCCTTATCCCACTAAGT+GGG | - | chr8_2:46638801-46638820 | Msa1250900:intron | 45.0% |
! | AAGCCTTATCCCACTAAGTG+GGG | - | chr8_2:46638802-46638821 | Msa1250900:intron | 45.0% |
! | ACCTATCTCTCTGAGGATGA+AGG | + | chr8_2:46638929-46638948 | None:intergenic | 45.0% |
TTCATCCTCAGAGAGATAGG+TGG | - | chr8_2:46638928-46638947 | Msa1250900:intron | 45.0% | |
! | TGAAGAGTTGTTTCCTGGTG+AGG | - | chr8_2:46639106-46639125 | Msa1250900:intron | 45.0% |
CACAGATGCTATCATAGTGC+AGG | + | chr8_2:46639546-46639565 | None:intergenic | 45.0% | |
ACTGCAGATATGCTTGTCCA+TGG | - | chr8_2:46640134-46640153 | Msa1250900:CDS | 45.0% | |
ATTCCTTTGTAGTGGCTGCA+TGG | - | chr8_2:46640365-46640384 | Msa1250900:intron | 45.0% | |
TTCCTTTGTAGTGGCTGCAT+GGG | - | chr8_2:46640366-46640385 | Msa1250900:intron | 45.0% | |
!! | GCTTCTTTGAGTATTGGGCT+TGG | + | chr8_2:46640417-46640436 | None:intergenic | 45.0% |
GAAAAGGGAATGCTAGGCTT+AGG | + | chr8_2:46640458-46640477 | None:intergenic | 45.0% | |
TGCTTCGAAAAGGGAATGCT+AGG | + | chr8_2:46640464-46640483 | None:intergenic | 45.0% | |
!! | TATTCAAATATATAAAAAAA+TGG | + | chr8_2:46639786-46639805 | None:intergenic | 5.0% |
!! | TATTCAAATATATAAAAAAA+TGG | + | chr8_2:46639786-46639805 | None:intergenic | 5.0% |
! | GCTCGATAGAGAGTACAAGG+TGG | - | chr8_2:46638557-46638576 | Msa1250900:intron | 50.0% |
CCACTTAGTGGGATAAGGCT+TGG | + | chr8_2:46638803-46638822 | None:intergenic | 50.0% | |
! | CCAAGCCTTATCCCACTAAG+TGG | - | chr8_2:46638800-46638819 | Msa1250900:intron | 50.0% |
CTTATCCCACTAAGTGGGGT+CGG | - | chr8_2:46638806-46638825 | Msa1250900:intron | 50.0% | |
GCCTTCATCCTCAGAGAGAT+AGG | - | chr8_2:46638925-46638944 | Msa1250900:intron | 50.0% | |
ATCTGTGCAAAGGACCGCAA+GGG | + | chr8_2:46639156-46639175 | None:intergenic | 50.0% | |
AATCTGTGCAAAGGACCGCA+AGG | + | chr8_2:46639157-46639176 | None:intergenic | 50.0% | |
GTGCAGGATAAGGAATGGTG+TGG | + | chr8_2:46639530-46639549 | None:intergenic | 50.0% | |
GCAGATATGCTTGTCCATGG+TGG | - | chr8_2:46640137-46640156 | Msa1250900:CDS | 50.0% | |
GTCTCTCTCTCTTTCCACCA+TGG | + | chr8_2:46640154-46640173 | None:intergenic | 50.0% | |
GAGAGAAGAGTGGACGTCTT+AGG | - | chr8_2:46640264-46640283 | Msa1250900:intron | 50.0% | |
AACTCCAAGGATCATGCTCC+CGG | + | chr8_2:46640345-46640364 | None:intergenic | 50.0% | |
AACCCATGCAGCCACTACAA+AGG | + | chr8_2:46640371-46640390 | None:intergenic | 50.0% | |
! | GCTCGATAGAGAGTACAAGG+TGG | - | chr8_2:46638557-46638576 | Msa1250900:intron | 50.0% |
CCACTTAGTGGGATAAGGCT+TGG | + | chr8_2:46638803-46638822 | None:intergenic | 50.0% | |
! | CCAAGCCTTATCCCACTAAG+TGG | - | chr8_2:46638800-46638819 | Msa1250900:intron | 50.0% |
CTTATCCCACTAAGTGGGGT+CGG | - | chr8_2:46638806-46638825 | Msa1250900:intron | 50.0% | |
GCCTTCATCCTCAGAGAGAT+AGG | - | chr8_2:46638925-46638944 | Msa1250900:intron | 50.0% | |
ATCTGTGCAAAGGACCGCAA+GGG | + | chr8_2:46639156-46639175 | None:intergenic | 50.0% | |
AATCTGTGCAAAGGACCGCA+AGG | + | chr8_2:46639157-46639176 | None:intergenic | 50.0% | |
GTGCAGGATAAGGAATGGTG+TGG | + | chr8_2:46639530-46639549 | None:intergenic | 50.0% | |
GCAGATATGCTTGTCCATGG+TGG | - | chr8_2:46640137-46640156 | Msa1250900:CDS | 50.0% | |
GTCTCTCTCTCTTTCCACCA+TGG | + | chr8_2:46640154-46640173 | None:intergenic | 50.0% | |
GAGAGAAGAGTGGACGTCTT+AGG | - | chr8_2:46640264-46640283 | Msa1250900:intron | 50.0% | |
AACTCCAAGGATCATGCTCC+CGG | + | chr8_2:46640345-46640364 | None:intergenic | 50.0% | |
AACCCATGCAGCCACTACAA+AGG | + | chr8_2:46640371-46640390 | None:intergenic | 50.0% | |
CGACCCCACTTAGTGGGATA+AGG | + | chr8_2:46638808-46638827 | None:intergenic | 55.0% | |
TGTAGCCGACCCCACTTAGT+GGG | + | chr8_2:46638814-46638833 | None:intergenic | 55.0% | |
ATGTAGCCGACCCCACTTAG+TGG | + | chr8_2:46638815-46638834 | None:intergenic | 55.0% | |
ACTAAGTGGGGTCGGCTACA+TGG | - | chr8_2:46638814-46638833 | Msa1250900:intron | 55.0% | |
CAGAGAGGTGACAGCTCTCA+CGG | + | chr8_2:46638954-46638973 | None:intergenic | 55.0% | |
GTGAGAGCTGTCACCTCTCT+GGG | - | chr8_2:46638953-46638972 | Msa1250900:intron | 55.0% | |
ACTTGCACGTCAACCCAGAG+AGG | + | chr8_2:46638969-46638988 | None:intergenic | 55.0% | |
AGGAGCCATTGTCTGATCCC+CGG | - | chr8_2:46640323-46640342 | Msa1250900:intron | 55.0% | |
ACTCCAAGGATCATGCTCCC+GGG | + | chr8_2:46640344-46640363 | None:intergenic | 55.0% | |
CGACCCCACTTAGTGGGATA+AGG | + | chr8_2:46638808-46638827 | None:intergenic | 55.0% | |
TGTAGCCGACCCCACTTAGT+GGG | + | chr8_2:46638814-46638833 | None:intergenic | 55.0% | |
ATGTAGCCGACCCCACTTAG+TGG | + | chr8_2:46638815-46638834 | None:intergenic | 55.0% | |
ACTAAGTGGGGTCGGCTACA+TGG | - | chr8_2:46638814-46638833 | Msa1250900:intron | 55.0% | |
CAGAGAGGTGACAGCTCTCA+CGG | + | chr8_2:46638954-46638973 | None:intergenic | 55.0% | |
GTGAGAGCTGTCACCTCTCT+GGG | - | chr8_2:46638953-46638972 | Msa1250900:intron | 55.0% | |
ACTTGCACGTCAACCCAGAG+AGG | + | chr8_2:46638969-46638988 | None:intergenic | 55.0% | |
AGGAGCCATTGTCTGATCCC+CGG | - | chr8_2:46640323-46640342 | Msa1250900:intron | 55.0% | |
ACTCCAAGGATCATGCTCCC+GGG | + | chr8_2:46640344-46640363 | None:intergenic | 55.0% | |
CACGGCCACCTATCTCTCTG+AGG | + | chr8_2:46638936-46638955 | None:intergenic | 60.0% | |
CGTGAGAGCTGTCACCTCTC+TGG | - | chr8_2:46638952-46638971 | Msa1250900:intron | 60.0% | |
TGACACGGAGTCACCTCACC+AGG | + | chr8_2:46639122-46639141 | None:intergenic | 60.0% | |
GGAGCCATTGTCTGATCCCC+GGG | - | chr8_2:46640324-46640343 | Msa1250900:intron | 60.0% | |
TGCTCCCGGGGATCAGACAA+TGG | + | chr8_2:46640331-46640350 | None:intergenic | 60.0% | |
! | ATCCCCGGGAGCATGATCCT+TGG | - | chr8_2:46640338-46640357 | Msa1250900:intron | 60.0% |
CTCCAAGGATCATGCTCCCG+GGG | + | chr8_2:46640343-46640362 | None:intergenic | 60.0% | |
CACGGCCACCTATCTCTCTG+AGG | + | chr8_2:46638936-46638955 | None:intergenic | 60.0% | |
CGTGAGAGCTGTCACCTCTC+TGG | - | chr8_2:46638952-46638971 | Msa1250900:intron | 60.0% | |
TGACACGGAGTCACCTCACC+AGG | + | chr8_2:46639122-46639141 | None:intergenic | 60.0% | |
GGAGCCATTGTCTGATCCCC+GGG | - | chr8_2:46640324-46640343 | Msa1250900:intron | 60.0% | |
TGCTCCCGGGGATCAGACAA+TGG | + | chr8_2:46640331-46640350 | None:intergenic | 60.0% | |
! | ATCCCCGGGAGCATGATCCT+TGG | - | chr8_2:46640338-46640357 | Msa1250900:intron | 60.0% |
CTCCAAGGATCATGCTCCCG+GGG | + | chr8_2:46640343-46640362 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8_2 | gene | 46638280 | 46640508 | 46638280 | ID=Msa1250900;Name=Msa1250900 |
chr8_2 | mRNA | 46638280 | 46640508 | 46638280 | ID=Msa1250900-mRNA-1;Parent=Msa1250900;Name=Msa1250900-mRNA-1;_AED=0.56;_eAED=0.60;_QI=0|0|0|0.8|0|0|5|0|106 |
chr8_2 | exon | 46640501 | 46640508 | 46640501 | ID=Msa1250900-mRNA-1:exon:14164;Parent=Msa1250900-mRNA-1 |
chr8_2 | exon | 46640085 | 46640178 | 46640085 | ID=Msa1250900-mRNA-1:exon:14163;Parent=Msa1250900-mRNA-1 |
chr8_2 | exon | 46639092 | 46639099 | 46639092 | ID=Msa1250900-mRNA-1:exon:14162;Parent=Msa1250900-mRNA-1 |
chr8_2 | exon | 46638569 | 46638647 | 46638569 | ID=Msa1250900-mRNA-1:exon:14161;Parent=Msa1250900-mRNA-1 |
chr8_2 | exon | 46638280 | 46638411 | 46638280 | ID=Msa1250900-mRNA-1:exon:14160;Parent=Msa1250900-mRNA-1 |
chr8_2 | CDS | 46640501 | 46640508 | 46640501 | ID=Msa1250900-mRNA-1:cds;Parent=Msa1250900-mRNA-1 |
chr8_2 | CDS | 46640085 | 46640178 | 46640085 | ID=Msa1250900-mRNA-1:cds;Parent=Msa1250900-mRNA-1 |
chr8_2 | CDS | 46639092 | 46639099 | 46639092 | ID=Msa1250900-mRNA-1:cds;Parent=Msa1250900-mRNA-1 |
chr8_2 | CDS | 46638569 | 46638647 | 46638569 | ID=Msa1250900-mRNA-1:cds;Parent=Msa1250900-mRNA-1 |
chr8_2 | CDS | 46638280 | 46638411 | 46638280 | ID=Msa1250900-mRNA-1:cds;Parent=Msa1250900-mRNA-1 |
Gene Sequence |
Protein sequence |