AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1250900


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 20 sgRNAs with CRISPR-Local

Find 314 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGGGTGAAATGAAGCATTT+TGG 0.270338 8_2:+46638330 None:intergenic
CTTCTTTGAGTATTGGGCTT+GGG 0.368437 8_2:+46638353 None:intergenic
GCTTCTTTGAGTATTGGGCT+TGG 0.396597 8_2:+46638352 None:intergenic
AGAGAGACTCTGAGTAGAAA+AGG 0.398060 8_2:-46638600 Msa1250900:CDS
TTCCTTTGTAGTGGCTGCAT+GGG 0.408759 8_2:-46638400 Msa1250900:intron
GAAAAGGGAATGCTAGGCTT+AGG 0.432057 8_2:+46638311 None:intergenic
ATTCCTTTGTAGTGGCTGCA+TGG 0.459322 8_2:-46638401 Msa1250900:intron
TGCTTCGAAAAGGGAATGCT+AGG 0.499690 8_2:+46638305 None:intergenic
AAAAGGGAATGCTAGGCTTA+GGG 0.501721 8_2:+46638312 None:intergenic
ATTTAGGCGAAATAGATTTG+TGG 0.527706 8_2:+46638278 None:intergenic
ATACCTGTGGATAATTCTAC+AGG 0.534208 8_2:-46640104 Msa1250900:CDS
TCTTGACAAAACTTCTATAC+CGG 0.540282 8_2:-46638568 Msa1250900:intron
GAGAGACTCTGAGTAGAAAA+GGG 0.545878 8_2:-46638599 Msa1250900:CDS
TTGAAGAGCTAGTACTAGCA+AGG 0.602140 8_2:-46640148 Msa1250900:CDS
ACTGCAGATATGCTTGTCCA+TGG 0.622489 8_2:-46638632 Msa1250900:intron
GTCTCTCTCTCTTTCCACCA+TGG 0.623417 8_2:+46638615 None:intergenic
AGGTACTGATAACGCAGACA+TGG 0.642353 8_2:-46640084 Msa1250900:intron
AATCTGTTTGAAAATACCTG+TGG 0.649563 8_2:-46640117 Msa1250900:CDS
GTACCTGTAGAATTATCCAC+AGG 0.658794 8_2:+46640101 None:intergenic
GCAGATATGCTTGTCCATGG+TGG 0.687626 8_2:-46638629 Msa1250900:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTCAATGTTAAAATTGTTTT+AGG - chr8_2:46639947-46639966 Msa1250900:intron 15.0%
!!! CTAATAAGTAATATCTTTTA+AGG - chr8_2:46639989-46640008 Msa1250900:intron 15.0%
!!! TTCAATGTTAAAATTGTTTT+AGG - chr8_2:46639947-46639966 Msa1250900:intron 15.0%
!!! CTAATAAGTAATATCTTTTA+AGG - chr8_2:46639989-46640008 Msa1250900:intron 15.0%
!!! TTCTATCATAAACCATATTT+TGG - chr8_2:46638856-46638875 Msa1250900:intron 20.0%
!! AGATTTAGAGATTAATAAGT+TGG + chr8_2:46638883-46638902 None:intergenic 20.0%
!! ATAATTTATGGTTGAACAAA+AGG + chr8_2:46639243-46639262 None:intergenic 20.0%
!! GATATCTATTTCATAGAAAA+TGG + chr8_2:46639373-46639392 None:intergenic 20.0%
!!! ATATTCATAGAAGTTACTTT+AGG + chr8_2:46639425-46639444 None:intergenic 20.0%
!! CTTCTATGAATATAGTTTAA+CGG - chr8_2:46639432-46639451 Msa1250900:intron 20.0%
!!! TAATCAGAGAAATTTGTTTT+GGG + chr8_2:46639625-46639644 None:intergenic 20.0%
!!! ATAATCAGAGAAATTTGTTT+TGG + chr8_2:46639626-46639645 None:intergenic 20.0%
!! AAGATATTACTTATTAGAAC+AGG + chr8_2:46639986-46640005 None:intergenic 20.0%
!!! TTCTATCATAAACCATATTT+TGG - chr8_2:46638856-46638875 Msa1250900:intron 20.0%
!! AGATTTAGAGATTAATAAGT+TGG + chr8_2:46638883-46638902 None:intergenic 20.0%
!! ATAATTTATGGTTGAACAAA+AGG + chr8_2:46639243-46639262 None:intergenic 20.0%
!! GATATCTATTTCATAGAAAA+TGG + chr8_2:46639373-46639392 None:intergenic 20.0%
!!! ATATTCATAGAAGTTACTTT+AGG + chr8_2:46639425-46639444 None:intergenic 20.0%
!! CTTCTATGAATATAGTTTAA+CGG - chr8_2:46639432-46639451 Msa1250900:intron 20.0%
!!! TAATCAGAGAAATTTGTTTT+GGG + chr8_2:46639625-46639644 None:intergenic 20.0%
!!! ATAATCAGAGAAATTTGTTT+TGG + chr8_2:46639626-46639645 None:intergenic 20.0%
!! AAGATATTACTTATTAGAAC+AGG + chr8_2:46639986-46640005 None:intergenic 20.0%
!! CGGATGTTATTTATAAGAAA+GGG - chr8_2:46638283-46638302 Msa1250900:CDS 25.0%
! TTTGATGTTAAAATGGTTTC+TGG - chr8_2:46638346-46638365 Msa1250900:CDS 25.0%
! TGGTTTATGATAGAAGATTA+TGG + chr8_2:46638851-46638870 None:intergenic 25.0%
!! TAATAAGTTGGACCAAAATA+TGG + chr8_2:46638871-46638890 None:intergenic 25.0%
! TTCAACCATAAATTATGTTG+TGG - chr8_2:46639247-46639266 Msa1250900:intron 25.0%
! TCAACCATAAATTATGTTGT+GGG - chr8_2:46639248-46639267 Msa1250900:intron 25.0%
! TGAAATAGATATCTACACTA+CGG - chr8_2:46639380-46639399 Msa1250900:intron 25.0%
!! TATTTAGATTTGCTTGTACA+TGG - chr8_2:46639682-46639701 Msa1250900:intron 25.0%
! TATAAGTATATAGTTTCCTC+AGG + chr8_2:46639748-46639767 None:intergenic 25.0%
! AAACTATATACTTATAGCCT+TGG - chr8_2:46639752-46639771 Msa1250900:intron 25.0%
! ATATTTGAATAGAGAACTAG+AGG - chr8_2:46639795-46639814 Msa1250900:intron 25.0%
! TATTTGAATAGAGAACTAGA+GGG - chr8_2:46639796-46639815 Msa1250900:intron 25.0%
! AAATTGATATACAAGACTAC+CGG + chr8_2:46640220-46640239 None:intergenic 25.0%
! TTGTATATCAATTTACTGCT+GGG - chr8_2:46640226-46640245 Msa1250900:intron 25.0%
! CCTATTCATAAAGTAGATTT+GGG + chr8_2:46640297-46640316 None:intergenic 25.0%
! ACCTATTCATAAAGTAGATT+TGG + chr8_2:46640298-46640317 None:intergenic 25.0%
! ACTTTATGAATAGGTTTAGA+AGG - chr8_2:46640303-46640322 Msa1250900:intron 25.0%
!! CGGATGTTATTTATAAGAAA+GGG - chr8_2:46638283-46638302 Msa1250900:CDS 25.0%
! TTTGATGTTAAAATGGTTTC+TGG - chr8_2:46638346-46638365 Msa1250900:CDS 25.0%
! TGGTTTATGATAGAAGATTA+TGG + chr8_2:46638851-46638870 None:intergenic 25.0%
!! TAATAAGTTGGACCAAAATA+TGG + chr8_2:46638871-46638890 None:intergenic 25.0%
! TTCAACCATAAATTATGTTG+TGG - chr8_2:46639247-46639266 Msa1250900:intron 25.0%
! TCAACCATAAATTATGTTGT+GGG - chr8_2:46639248-46639267 Msa1250900:intron 25.0%
! TGAAATAGATATCTACACTA+CGG - chr8_2:46639380-46639399 Msa1250900:intron 25.0%
!! TATTTAGATTTGCTTGTACA+TGG - chr8_2:46639682-46639701 Msa1250900:intron 25.0%
! TATAAGTATATAGTTTCCTC+AGG + chr8_2:46639748-46639767 None:intergenic 25.0%
! AAACTATATACTTATAGCCT+TGG - chr8_2:46639752-46639771 Msa1250900:intron 25.0%
! ATATTTGAATAGAGAACTAG+AGG - chr8_2:46639795-46639814 Msa1250900:intron 25.0%
! TATTTGAATAGAGAACTAGA+GGG - chr8_2:46639796-46639815 Msa1250900:intron 25.0%
! AAATTGATATACAAGACTAC+CGG + chr8_2:46640220-46640239 None:intergenic 25.0%
! TTGTATATCAATTTACTGCT+GGG - chr8_2:46640226-46640245 Msa1250900:intron 25.0%
! CCTATTCATAAAGTAGATTT+GGG + chr8_2:46640297-46640316 None:intergenic 25.0%
! ACCTATTCATAAAGTAGATT+TGG + chr8_2:46640298-46640317 None:intergenic 25.0%
! ACTTTATGAATAGGTTTAGA+AGG - chr8_2:46640303-46640322 Msa1250900:intron 25.0%
! GCGGATGTTATTTATAAGAA+AGG - chr8_2:46638282-46638301 Msa1250900:CDS 30.0%
GTCTTTGATGTAAATGCATA+TGG - chr8_2:46638313-46638332 Msa1250900:CDS 30.0%
TGATGTAAATGCATATGGTT+TGG - chr8_2:46638318-46638337 Msa1250900:CDS 30.0%
AGAACTAATTAGAAAAGGTG+TGG + chr8_2:46638381-46638400 None:intergenic 30.0%
!!! ACCTTTTCTAATTAGTTCTG+AGG - chr8_2:46638382-46638401 Msa1250900:CDS 30.0%
ACCTCAGAACTAATTAGAAA+AGG + chr8_2:46638386-46638405 None:intergenic 30.0%
AATCTGTTTGAAAATACCTG+TGG - chr8_2:46638649-46638668 Msa1250900:intron 30.0%
ATACTTCCTCATAGATAACA+TGG - chr8_2:46639045-46639064 Msa1250900:intron 30.0%
ATTTATGGTTGAACAAAAGG+AGG + chr8_2:46639240-46639259 None:intergenic 30.0%
AGATCCCACAACATAATTTA+TGG + chr8_2:46639255-46639274 None:intergenic 30.0%
ACAGATGAAAGATAGAAAGA+GGG + chr8_2:46639282-46639301 None:intergenic 30.0%
AACAGATGAAAGATAGAAAG+AGG + chr8_2:46639283-46639302 None:intergenic 30.0%
TCCAACAATAATTTGACTGT+GGG + chr8_2:46639326-46639345 None:intergenic 30.0%
TTCCAACAATAATTTGACTG+TGG + chr8_2:46639327-46639346 None:intergenic 30.0%
ATTTCCCAAATGAAACAAGT+CGG + chr8_2:46639661-46639680 None:intergenic 30.0%
TAACAATCATTTAACTCCTG+AGG - chr8_2:46639729-46639748 Msa1250900:intron 30.0%
!! AAAAAATGGATTGATGTCCA+AGG + chr8_2:46639772-46639791 None:intergenic 30.0%
! AAATGCTAACCATTTGAGAT+AGG + chr8_2:46639837-46639856 None:intergenic 30.0%
TATGTTGAATGCAGATGAAT+AGG - chr8_2:46639919-46639938 Msa1250900:intron 30.0%
ACGTTAACACATGTCATATT+AGG - chr8_2:46640013-46640032 Msa1250900:intron 30.0%
TCTTGACAAAACTTCTATAC+CGG - chr8_2:46640198-46640217 Msa1250900:intron 30.0%
CTTGTATATCAATTTACTGC+TGG - chr8_2:46640225-46640244 Msa1250900:intron 30.0%
TGTATATCAATTTACTGCTG+GGG - chr8_2:46640227-46640246 Msa1250900:intron 30.0%
TTCATAAAGTAGATTTGGGA+AGG + chr8_2:46640293-46640312 None:intergenic 30.0%
CCCAAATCTACTTTATGAAT+AGG - chr8_2:46640294-46640313 Msa1250900:intron 30.0%
!!! TTTTGGCTTCTTTGAGTATT+GGG + chr8_2:46640422-46640441 None:intergenic 30.0%
!!! ATTTTGGCTTCTTTGAGTAT+TGG + chr8_2:46640423-46640442 None:intergenic 30.0%
! GCGGATGTTATTTATAAGAA+AGG - chr8_2:46638282-46638301 Msa1250900:CDS 30.0%
GTCTTTGATGTAAATGCATA+TGG - chr8_2:46638313-46638332 Msa1250900:CDS 30.0%
TGATGTAAATGCATATGGTT+TGG - chr8_2:46638318-46638337 Msa1250900:CDS 30.0%
AGAACTAATTAGAAAAGGTG+TGG + chr8_2:46638381-46638400 None:intergenic 30.0%
!!! ACCTTTTCTAATTAGTTCTG+AGG - chr8_2:46638382-46638401 Msa1250900:CDS 30.0%
ACCTCAGAACTAATTAGAAA+AGG + chr8_2:46638386-46638405 None:intergenic 30.0%
AATCTGTTTGAAAATACCTG+TGG - chr8_2:46638649-46638668 Msa1250900:intron 30.0%
ATACTTCCTCATAGATAACA+TGG - chr8_2:46639045-46639064 Msa1250900:intron 30.0%
ATTTATGGTTGAACAAAAGG+AGG + chr8_2:46639240-46639259 None:intergenic 30.0%
AGATCCCACAACATAATTTA+TGG + chr8_2:46639255-46639274 None:intergenic 30.0%
ACAGATGAAAGATAGAAAGA+GGG + chr8_2:46639282-46639301 None:intergenic 30.0%
AACAGATGAAAGATAGAAAG+AGG + chr8_2:46639283-46639302 None:intergenic 30.0%
TCCAACAATAATTTGACTGT+GGG + chr8_2:46639326-46639345 None:intergenic 30.0%
TTCCAACAATAATTTGACTG+TGG + chr8_2:46639327-46639346 None:intergenic 30.0%
ATTTCCCAAATGAAACAAGT+CGG + chr8_2:46639661-46639680 None:intergenic 30.0%
TAACAATCATTTAACTCCTG+AGG - chr8_2:46639729-46639748 Msa1250900:intron 30.0%
!! AAAAAATGGATTGATGTCCA+AGG + chr8_2:46639772-46639791 None:intergenic 30.0%
! AAATGCTAACCATTTGAGAT+AGG + chr8_2:46639837-46639856 None:intergenic 30.0%
TATGTTGAATGCAGATGAAT+AGG - chr8_2:46639919-46639938 Msa1250900:intron 30.0%
ACGTTAACACATGTCATATT+AGG - chr8_2:46640013-46640032 Msa1250900:intron 30.0%
TCTTGACAAAACTTCTATAC+CGG - chr8_2:46640198-46640217 Msa1250900:intron 30.0%
CTTGTATATCAATTTACTGC+TGG - chr8_2:46640225-46640244 Msa1250900:intron 30.0%
TGTATATCAATTTACTGCTG+GGG - chr8_2:46640227-46640246 Msa1250900:intron 30.0%
TTCATAAAGTAGATTTGGGA+AGG + chr8_2:46640293-46640312 None:intergenic 30.0%
CCCAAATCTACTTTATGAAT+AGG - chr8_2:46640294-46640313 Msa1250900:intron 30.0%
!!! TTTTGGCTTCTTTGAGTATT+GGG + chr8_2:46640422-46640441 None:intergenic 30.0%
!!! ATTTTGGCTTCTTTGAGTAT+TGG + chr8_2:46640423-46640442 None:intergenic 30.0%
! TGTAAATGCATATGGTTTGG+AGG - chr8_2:46638321-46638340 Msa1250900:CDS 35.0%
! GTAAATGCATATGGTTTGGA+GGG - chr8_2:46638322-46638341 Msa1250900:CDS 35.0%
!! GGAGGGTTTTGATGTTAAAA+TGG - chr8_2:46638339-46638358 Msa1250900:CDS 35.0%
! TGTTAAAATGGTTTCTGGAG+AGG - chr8_2:46638351-46638370 Msa1250900:CDS 35.0%
! TAGCTTTTAGATCAGACAAC+AGG - chr8_2:46638595-46638614 Msa1250900:CDS 35.0%
ATACCTGTGGATAATTCTAC+AGG - chr8_2:46638662-46638681 Msa1250900:intron 35.0%
! TCACCTTTTTCTCAAACAAG+AGG + chr8_2:46638726-46638745 None:intergenic 35.0%
! AAATGCAGAGTTTCTAAGGA+AGG + chr8_2:46638756-46638775 None:intergenic 35.0%
TCCTTAGAAACTCTGCATTT+AGG - chr8_2:46638756-46638775 Msa1250900:intron 35.0%
CCTTAGAAACTCTGCATTTA+GGG - chr8_2:46638757-46638776 Msa1250900:intron 35.0%
GTTTGCAAATTTCACTGAGA+AGG + chr8_2:46638999-46639018 None:intergenic 35.0%
TATGTGTATGTATGTGTGTG+TGG + chr8_2:46639028-46639047 None:intergenic 35.0%
AGGGTAATTTCACAATGACA+CGG + chr8_2:46639137-46639156 None:intergenic 35.0%
TCATTGTGAAATTACCCTTG+CGG - chr8_2:46639139-46639158 Msa1250900:intron 35.0%
CATCAACAAAATCTGTGCAA+AGG + chr8_2:46639166-46639185 None:intergenic 35.0%
AAAACAGAAGAGGTTCACAA+AGG + chr8_2:46639192-46639211 None:intergenic 35.0%
! TCTGTTTTGTGTCTGAGAAA+AGG - chr8_2:46639204-46639223 Msa1250900:intron 35.0%
CAGATGAAAGATAGAAAGAG+GGG + chr8_2:46639281-46639300 None:intergenic 35.0%
TCCCACAGTCAAATTATTGT+TGG - chr8_2:46639322-46639341 Msa1250900:intron 35.0%
GATTTAGATATGCTTGTCCA+TGG - chr8_2:46639484-46639503 Msa1250900:intron 35.0%
AGCGCACAAATTAATGATGT+GGG + chr8_2:46639579-46639598 None:intergenic 35.0%
TAGCGCACAAATTAATGATG+TGG + chr8_2:46639580-46639599 None:intergenic 35.0%
!! TCATTAATTTGTGCGCTACT+TGG - chr8_2:46639582-46639601 Msa1250900:intron 35.0%
TTTCCCAAATGAAACAAGTC+GGG + chr8_2:46639660-46639679 None:intergenic 35.0%
! TTAGATTTGCTTGTACATGG+TGG - chr8_2:46639685-46639704 Msa1250900:intron 35.0%
ACTCACTATCCTATCTCAAA+TGG - chr8_2:46639825-46639844 Msa1250900:intron 35.0%
ACACAGTGACAAGAAATAGA+AGG + chr8_2:46639870-46639889 None:intergenic 35.0%
!!! TGTCACTGTGTTGTTTTGTT+TGG - chr8_2:46639879-46639898 Msa1250900:intron 35.0%
AGACAGCATCTCAGATAATT+TGG + chr8_2:46640048-46640067 None:intergenic 35.0%
ATACTAAACAGAGAGAAGAG+TGG - chr8_2:46640254-46640273 Msa1250900:intron 35.0%
ACTACAAAGGAATAACTCCA+AGG + chr8_2:46640358-46640377 None:intergenic 35.0%
TTGGAGTTATTCCTTTGTAG+TGG - chr8_2:46640357-46640376 Msa1250900:intron 35.0%
!! TAGGGTGAAATGAAGCATTT+TGG + chr8_2:46640439-46640458 None:intergenic 35.0%
! TGTAAATGCATATGGTTTGG+AGG - chr8_2:46638321-46638340 Msa1250900:CDS 35.0%
! GTAAATGCATATGGTTTGGA+GGG - chr8_2:46638322-46638341 Msa1250900:CDS 35.0%
!! GGAGGGTTTTGATGTTAAAA+TGG - chr8_2:46638339-46638358 Msa1250900:CDS 35.0%
! TGTTAAAATGGTTTCTGGAG+AGG - chr8_2:46638351-46638370 Msa1250900:CDS 35.0%
! TAGCTTTTAGATCAGACAAC+AGG - chr8_2:46638595-46638614 Msa1250900:CDS 35.0%
ATACCTGTGGATAATTCTAC+AGG - chr8_2:46638662-46638681 Msa1250900:intron 35.0%
! TCACCTTTTTCTCAAACAAG+AGG + chr8_2:46638726-46638745 None:intergenic 35.0%
! AAATGCAGAGTTTCTAAGGA+AGG + chr8_2:46638756-46638775 None:intergenic 35.0%
TCCTTAGAAACTCTGCATTT+AGG - chr8_2:46638756-46638775 Msa1250900:intron 35.0%
CCTTAGAAACTCTGCATTTA+GGG - chr8_2:46638757-46638776 Msa1250900:intron 35.0%
GTTTGCAAATTTCACTGAGA+AGG + chr8_2:46638999-46639018 None:intergenic 35.0%
TATGTGTATGTATGTGTGTG+TGG + chr8_2:46639028-46639047 None:intergenic 35.0%
AGGGTAATTTCACAATGACA+CGG + chr8_2:46639137-46639156 None:intergenic 35.0%
TCATTGTGAAATTACCCTTG+CGG - chr8_2:46639139-46639158 Msa1250900:intron 35.0%
CATCAACAAAATCTGTGCAA+AGG + chr8_2:46639166-46639185 None:intergenic 35.0%
AAAACAGAAGAGGTTCACAA+AGG + chr8_2:46639192-46639211 None:intergenic 35.0%
! TCTGTTTTGTGTCTGAGAAA+AGG - chr8_2:46639204-46639223 Msa1250900:intron 35.0%
CAGATGAAAGATAGAAAGAG+GGG + chr8_2:46639281-46639300 None:intergenic 35.0%
TCCCACAGTCAAATTATTGT+TGG - chr8_2:46639322-46639341 Msa1250900:intron 35.0%
GATTTAGATATGCTTGTCCA+TGG - chr8_2:46639484-46639503 Msa1250900:intron 35.0%
AGCGCACAAATTAATGATGT+GGG + chr8_2:46639579-46639598 None:intergenic 35.0%
TAGCGCACAAATTAATGATG+TGG + chr8_2:46639580-46639599 None:intergenic 35.0%
!! TCATTAATTTGTGCGCTACT+TGG - chr8_2:46639582-46639601 Msa1250900:intron 35.0%
TTTCCCAAATGAAACAAGTC+GGG + chr8_2:46639660-46639679 None:intergenic 35.0%
! TTAGATTTGCTTGTACATGG+TGG - chr8_2:46639685-46639704 Msa1250900:intron 35.0%
ACTCACTATCCTATCTCAAA+TGG - chr8_2:46639825-46639844 Msa1250900:intron 35.0%
ACACAGTGACAAGAAATAGA+AGG + chr8_2:46639870-46639889 None:intergenic 35.0%
!!! TGTCACTGTGTTGTTTTGTT+TGG - chr8_2:46639879-46639898 Msa1250900:intron 35.0%
AGACAGCATCTCAGATAATT+TGG + chr8_2:46640048-46640067 None:intergenic 35.0%
ATACTAAACAGAGAGAAGAG+TGG - chr8_2:46640254-46640273 Msa1250900:intron 35.0%
ACTACAAAGGAATAACTCCA+AGG + chr8_2:46640358-46640377 None:intergenic 35.0%
TTGGAGTTATTCCTTTGTAG+TGG - chr8_2:46640357-46640376 Msa1250900:intron 35.0%
!! TAGGGTGAAATGAAGCATTT+TGG + chr8_2:46640439-46640458 None:intergenic 35.0%
TTGAAGAGCTAGTACTAGCA+AGG - chr8_2:46638618-46638637 Msa1250900:CDS 40.0%
GTACCTGTAGAATTATCCAC+AGG + chr8_2:46638668-46638687 None:intergenic 40.0%
! CTGCCTCTTGTTTGAGAAAA+AGG - chr8_2:46638720-46638739 Msa1250900:intron 40.0%
CCCTAAATGCAGAGTTTCTA+AGG + chr8_2:46638760-46638779 None:intergenic 40.0%
TCACTGCCATGTTATCTATG+AGG + chr8_2:46639054-46639073 None:intergenic 40.0%
! ATGTGTGAAGAGTTGTTTCC+TGG - chr8_2:46639101-46639120 Msa1250900:intron 40.0%
TCTCAGACACAAAACAGAAG+AGG + chr8_2:46639202-46639221 None:intergenic 40.0%
ACTACGGATTTCATGTGAAG+TGG - chr8_2:46639396-46639415 Msa1250900:intron 40.0%
TTAGATATGCTTGTCCATGG+TGG - chr8_2:46639487-46639506 Msa1250900:intron 40.0%
! CAGTTTTTCTCTTTCCACCA+TGG + chr8_2:46639504-46639523 None:intergenic 40.0%
TCATAGTGCAGGATAAGGAA+TGG + chr8_2:46639535-46639554 None:intergenic 40.0%
TGCTATCATAGTGCAGGATA+AGG + chr8_2:46639540-46639559 None:intergenic 40.0%
! TGTACCCGACTTGTTTCATT+TGG - chr8_2:46639653-46639672 Msa1250900:intron 40.0%
! GTACCCGACTTGTTTCATTT+GGG - chr8_2:46639654-46639673 Msa1250900:intron 40.0%
! TTTGCTTGTACATGGTGGAA+AGG - chr8_2:46639690-46639709 Msa1250900:intron 40.0%
! TTGCTTGTACATGGTGGAAA+GGG - chr8_2:46639691-46639710 Msa1250900:intron 40.0%
GAATAGAGAACTAGAGGGTT+TGG - chr8_2:46639801-46639820 Msa1250900:intron 40.0%
GTTGAATGCAGATGAATAGG+AGG - chr8_2:46639922-46639941 Msa1250900:intron 40.0%
AGAGAGACTCTGAGTAGAAA+AGG - chr8_2:46640166-46640185 Msa1250900:intron 40.0%
GAGAGACTCTGAGTAGAAAA+GGG - chr8_2:46640167-46640186 Msa1250900:intron 40.0%
!! CTTCTTTGAGTATTGGGCTT+GGG + chr8_2:46640416-46640435 None:intergenic 40.0%
AAAAGGGAATGCTAGGCTTA+GGG + chr8_2:46640457-46640476 None:intergenic 40.0%
! TGTGGCTTTTGCTTCGAAAA+GGG + chr8_2:46640473-46640492 None:intergenic 40.0%
! TTGTGGCTTTTGCTTCGAAA+AGG + chr8_2:46640474-46640493 None:intergenic 40.0%
TTGAAGAGCTAGTACTAGCA+AGG - chr8_2:46638618-46638637 Msa1250900:CDS 40.0%
GTACCTGTAGAATTATCCAC+AGG + chr8_2:46638668-46638687 None:intergenic 40.0%
! CTGCCTCTTGTTTGAGAAAA+AGG - chr8_2:46638720-46638739 Msa1250900:intron 40.0%
CCCTAAATGCAGAGTTTCTA+AGG + chr8_2:46638760-46638779 None:intergenic 40.0%
TCACTGCCATGTTATCTATG+AGG + chr8_2:46639054-46639073 None:intergenic 40.0%
! ATGTGTGAAGAGTTGTTTCC+TGG - chr8_2:46639101-46639120 Msa1250900:intron 40.0%
TCTCAGACACAAAACAGAAG+AGG + chr8_2:46639202-46639221 None:intergenic 40.0%
ACTACGGATTTCATGTGAAG+TGG - chr8_2:46639396-46639415 Msa1250900:intron 40.0%
TTAGATATGCTTGTCCATGG+TGG - chr8_2:46639487-46639506 Msa1250900:intron 40.0%
! CAGTTTTTCTCTTTCCACCA+TGG + chr8_2:46639504-46639523 None:intergenic 40.0%
TCATAGTGCAGGATAAGGAA+TGG + chr8_2:46639535-46639554 None:intergenic 40.0%
TGCTATCATAGTGCAGGATA+AGG + chr8_2:46639540-46639559 None:intergenic 40.0%
! TGTACCCGACTTGTTTCATT+TGG - chr8_2:46639653-46639672 Msa1250900:intron 40.0%
! GTACCCGACTTGTTTCATTT+GGG - chr8_2:46639654-46639673 Msa1250900:intron 40.0%
! TTTGCTTGTACATGGTGGAA+AGG - chr8_2:46639690-46639709 Msa1250900:intron 40.0%
! TTGCTTGTACATGGTGGAAA+GGG - chr8_2:46639691-46639710 Msa1250900:intron 40.0%
GAATAGAGAACTAGAGGGTT+TGG - chr8_2:46639801-46639820 Msa1250900:intron 40.0%
GTTGAATGCAGATGAATAGG+AGG - chr8_2:46639922-46639941 Msa1250900:intron 40.0%
AGAGAGACTCTGAGTAGAAA+AGG - chr8_2:46640166-46640185 Msa1250900:intron 40.0%
GAGAGACTCTGAGTAGAAAA+GGG - chr8_2:46640167-46640186 Msa1250900:intron 40.0%
!! CTTCTTTGAGTATTGGGCTT+GGG + chr8_2:46640416-46640435 None:intergenic 40.0%
AAAAGGGAATGCTAGGCTTA+GGG + chr8_2:46640457-46640476 None:intergenic 40.0%
! TGTGGCTTTTGCTTCGAAAA+GGG + chr8_2:46640473-46640492 None:intergenic 40.0%
! TTGTGGCTTTTGCTTCGAAA+AGG + chr8_2:46640474-46640493 None:intergenic 40.0%
! GTTGCTCGATAGAGAGTACA+AGG - chr8_2:46638554-46638573 Msa1250900:intron 45.0%
GTACAAGGTGGCTATGATGT+TGG - chr8_2:46638569-46638588 Msa1250900:CDS 45.0%
!! AGGTACTGATAACGCAGACA+TGG - chr8_2:46638682-46638701 Msa1250900:intron 45.0%
! CAAGCCTTATCCCACTAAGT+GGG - chr8_2:46638801-46638820 Msa1250900:intron 45.0%
! AAGCCTTATCCCACTAAGTG+GGG - chr8_2:46638802-46638821 Msa1250900:intron 45.0%
! ACCTATCTCTCTGAGGATGA+AGG + chr8_2:46638929-46638948 None:intergenic 45.0%
TTCATCCTCAGAGAGATAGG+TGG - chr8_2:46638928-46638947 Msa1250900:intron 45.0%
! TGAAGAGTTGTTTCCTGGTG+AGG - chr8_2:46639106-46639125 Msa1250900:intron 45.0%
CACAGATGCTATCATAGTGC+AGG + chr8_2:46639546-46639565 None:intergenic 45.0%
ACTGCAGATATGCTTGTCCA+TGG - chr8_2:46640134-46640153 Msa1250900:CDS 45.0%
ATTCCTTTGTAGTGGCTGCA+TGG - chr8_2:46640365-46640384 Msa1250900:intron 45.0%
TTCCTTTGTAGTGGCTGCAT+GGG - chr8_2:46640366-46640385 Msa1250900:intron 45.0%
!! GCTTCTTTGAGTATTGGGCT+TGG + chr8_2:46640417-46640436 None:intergenic 45.0%
GAAAAGGGAATGCTAGGCTT+AGG + chr8_2:46640458-46640477 None:intergenic 45.0%
TGCTTCGAAAAGGGAATGCT+AGG + chr8_2:46640464-46640483 None:intergenic 45.0%
! GTTGCTCGATAGAGAGTACA+AGG - chr8_2:46638554-46638573 Msa1250900:intron 45.0%
GTACAAGGTGGCTATGATGT+TGG - chr8_2:46638569-46638588 Msa1250900:CDS 45.0%
!! AGGTACTGATAACGCAGACA+TGG - chr8_2:46638682-46638701 Msa1250900:intron 45.0%
! CAAGCCTTATCCCACTAAGT+GGG - chr8_2:46638801-46638820 Msa1250900:intron 45.0%
! AAGCCTTATCCCACTAAGTG+GGG - chr8_2:46638802-46638821 Msa1250900:intron 45.0%
! ACCTATCTCTCTGAGGATGA+AGG + chr8_2:46638929-46638948 None:intergenic 45.0%
TTCATCCTCAGAGAGATAGG+TGG - chr8_2:46638928-46638947 Msa1250900:intron 45.0%
! TGAAGAGTTGTTTCCTGGTG+AGG - chr8_2:46639106-46639125 Msa1250900:intron 45.0%
CACAGATGCTATCATAGTGC+AGG + chr8_2:46639546-46639565 None:intergenic 45.0%
ACTGCAGATATGCTTGTCCA+TGG - chr8_2:46640134-46640153 Msa1250900:CDS 45.0%
ATTCCTTTGTAGTGGCTGCA+TGG - chr8_2:46640365-46640384 Msa1250900:intron 45.0%
TTCCTTTGTAGTGGCTGCAT+GGG - chr8_2:46640366-46640385 Msa1250900:intron 45.0%
!! GCTTCTTTGAGTATTGGGCT+TGG + chr8_2:46640417-46640436 None:intergenic 45.0%
GAAAAGGGAATGCTAGGCTT+AGG + chr8_2:46640458-46640477 None:intergenic 45.0%
TGCTTCGAAAAGGGAATGCT+AGG + chr8_2:46640464-46640483 None:intergenic 45.0%
!! TATTCAAATATATAAAAAAA+TGG + chr8_2:46639786-46639805 None:intergenic 5.0%
!! TATTCAAATATATAAAAAAA+TGG + chr8_2:46639786-46639805 None:intergenic 5.0%
! GCTCGATAGAGAGTACAAGG+TGG - chr8_2:46638557-46638576 Msa1250900:intron 50.0%
CCACTTAGTGGGATAAGGCT+TGG + chr8_2:46638803-46638822 None:intergenic 50.0%
! CCAAGCCTTATCCCACTAAG+TGG - chr8_2:46638800-46638819 Msa1250900:intron 50.0%
CTTATCCCACTAAGTGGGGT+CGG - chr8_2:46638806-46638825 Msa1250900:intron 50.0%
GCCTTCATCCTCAGAGAGAT+AGG - chr8_2:46638925-46638944 Msa1250900:intron 50.0%
ATCTGTGCAAAGGACCGCAA+GGG + chr8_2:46639156-46639175 None:intergenic 50.0%
AATCTGTGCAAAGGACCGCA+AGG + chr8_2:46639157-46639176 None:intergenic 50.0%
GTGCAGGATAAGGAATGGTG+TGG + chr8_2:46639530-46639549 None:intergenic 50.0%
GCAGATATGCTTGTCCATGG+TGG - chr8_2:46640137-46640156 Msa1250900:CDS 50.0%
GTCTCTCTCTCTTTCCACCA+TGG + chr8_2:46640154-46640173 None:intergenic 50.0%
GAGAGAAGAGTGGACGTCTT+AGG - chr8_2:46640264-46640283 Msa1250900:intron 50.0%
AACTCCAAGGATCATGCTCC+CGG + chr8_2:46640345-46640364 None:intergenic 50.0%
AACCCATGCAGCCACTACAA+AGG + chr8_2:46640371-46640390 None:intergenic 50.0%
! GCTCGATAGAGAGTACAAGG+TGG - chr8_2:46638557-46638576 Msa1250900:intron 50.0%
CCACTTAGTGGGATAAGGCT+TGG + chr8_2:46638803-46638822 None:intergenic 50.0%
! CCAAGCCTTATCCCACTAAG+TGG - chr8_2:46638800-46638819 Msa1250900:intron 50.0%
CTTATCCCACTAAGTGGGGT+CGG - chr8_2:46638806-46638825 Msa1250900:intron 50.0%
GCCTTCATCCTCAGAGAGAT+AGG - chr8_2:46638925-46638944 Msa1250900:intron 50.0%
ATCTGTGCAAAGGACCGCAA+GGG + chr8_2:46639156-46639175 None:intergenic 50.0%
AATCTGTGCAAAGGACCGCA+AGG + chr8_2:46639157-46639176 None:intergenic 50.0%
GTGCAGGATAAGGAATGGTG+TGG + chr8_2:46639530-46639549 None:intergenic 50.0%
GCAGATATGCTTGTCCATGG+TGG - chr8_2:46640137-46640156 Msa1250900:CDS 50.0%
GTCTCTCTCTCTTTCCACCA+TGG + chr8_2:46640154-46640173 None:intergenic 50.0%
GAGAGAAGAGTGGACGTCTT+AGG - chr8_2:46640264-46640283 Msa1250900:intron 50.0%
AACTCCAAGGATCATGCTCC+CGG + chr8_2:46640345-46640364 None:intergenic 50.0%
AACCCATGCAGCCACTACAA+AGG + chr8_2:46640371-46640390 None:intergenic 50.0%
CGACCCCACTTAGTGGGATA+AGG + chr8_2:46638808-46638827 None:intergenic 55.0%
TGTAGCCGACCCCACTTAGT+GGG + chr8_2:46638814-46638833 None:intergenic 55.0%
ATGTAGCCGACCCCACTTAG+TGG + chr8_2:46638815-46638834 None:intergenic 55.0%
ACTAAGTGGGGTCGGCTACA+TGG - chr8_2:46638814-46638833 Msa1250900:intron 55.0%
CAGAGAGGTGACAGCTCTCA+CGG + chr8_2:46638954-46638973 None:intergenic 55.0%
GTGAGAGCTGTCACCTCTCT+GGG - chr8_2:46638953-46638972 Msa1250900:intron 55.0%
ACTTGCACGTCAACCCAGAG+AGG + chr8_2:46638969-46638988 None:intergenic 55.0%
AGGAGCCATTGTCTGATCCC+CGG - chr8_2:46640323-46640342 Msa1250900:intron 55.0%
ACTCCAAGGATCATGCTCCC+GGG + chr8_2:46640344-46640363 None:intergenic 55.0%
CGACCCCACTTAGTGGGATA+AGG + chr8_2:46638808-46638827 None:intergenic 55.0%
TGTAGCCGACCCCACTTAGT+GGG + chr8_2:46638814-46638833 None:intergenic 55.0%
ATGTAGCCGACCCCACTTAG+TGG + chr8_2:46638815-46638834 None:intergenic 55.0%
ACTAAGTGGGGTCGGCTACA+TGG - chr8_2:46638814-46638833 Msa1250900:intron 55.0%
CAGAGAGGTGACAGCTCTCA+CGG + chr8_2:46638954-46638973 None:intergenic 55.0%
GTGAGAGCTGTCACCTCTCT+GGG - chr8_2:46638953-46638972 Msa1250900:intron 55.0%
ACTTGCACGTCAACCCAGAG+AGG + chr8_2:46638969-46638988 None:intergenic 55.0%
AGGAGCCATTGTCTGATCCC+CGG - chr8_2:46640323-46640342 Msa1250900:intron 55.0%
ACTCCAAGGATCATGCTCCC+GGG + chr8_2:46640344-46640363 None:intergenic 55.0%
CACGGCCACCTATCTCTCTG+AGG + chr8_2:46638936-46638955 None:intergenic 60.0%
CGTGAGAGCTGTCACCTCTC+TGG - chr8_2:46638952-46638971 Msa1250900:intron 60.0%
TGACACGGAGTCACCTCACC+AGG + chr8_2:46639122-46639141 None:intergenic 60.0%
GGAGCCATTGTCTGATCCCC+GGG - chr8_2:46640324-46640343 Msa1250900:intron 60.0%
TGCTCCCGGGGATCAGACAA+TGG + chr8_2:46640331-46640350 None:intergenic 60.0%
! ATCCCCGGGAGCATGATCCT+TGG - chr8_2:46640338-46640357 Msa1250900:intron 60.0%
CTCCAAGGATCATGCTCCCG+GGG + chr8_2:46640343-46640362 None:intergenic 60.0%
CACGGCCACCTATCTCTCTG+AGG + chr8_2:46638936-46638955 None:intergenic 60.0%
CGTGAGAGCTGTCACCTCTC+TGG - chr8_2:46638952-46638971 Msa1250900:intron 60.0%
TGACACGGAGTCACCTCACC+AGG + chr8_2:46639122-46639141 None:intergenic 60.0%
GGAGCCATTGTCTGATCCCC+GGG - chr8_2:46640324-46640343 Msa1250900:intron 60.0%
TGCTCCCGGGGATCAGACAA+TGG + chr8_2:46640331-46640350 None:intergenic 60.0%
! ATCCCCGGGAGCATGATCCT+TGG - chr8_2:46640338-46640357 Msa1250900:intron 60.0%
CTCCAAGGATCATGCTCCCG+GGG + chr8_2:46640343-46640362 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 46638280 46640508 46638280 ID=Msa1250900;Name=Msa1250900
chr8_2 mRNA 46638280 46640508 46638280 ID=Msa1250900-mRNA-1;Parent=Msa1250900;Name=Msa1250900-mRNA-1;_AED=0.56;_eAED=0.60;_QI=0|0|0|0.8|0|0|5|0|106
chr8_2 exon 46640501 46640508 46640501 ID=Msa1250900-mRNA-1:exon:14164;Parent=Msa1250900-mRNA-1
chr8_2 exon 46640085 46640178 46640085 ID=Msa1250900-mRNA-1:exon:14163;Parent=Msa1250900-mRNA-1
chr8_2 exon 46639092 46639099 46639092 ID=Msa1250900-mRNA-1:exon:14162;Parent=Msa1250900-mRNA-1
chr8_2 exon 46638569 46638647 46638569 ID=Msa1250900-mRNA-1:exon:14161;Parent=Msa1250900-mRNA-1
chr8_2 exon 46638280 46638411 46638280 ID=Msa1250900-mRNA-1:exon:14160;Parent=Msa1250900-mRNA-1
chr8_2 CDS 46640501 46640508 46640501 ID=Msa1250900-mRNA-1:cds;Parent=Msa1250900-mRNA-1
chr8_2 CDS 46640085 46640178 46640085 ID=Msa1250900-mRNA-1:cds;Parent=Msa1250900-mRNA-1
chr8_2 CDS 46639092 46639099 46639092 ID=Msa1250900-mRNA-1:cds;Parent=Msa1250900-mRNA-1
chr8_2 CDS 46638569 46638647 46638569 ID=Msa1250900-mRNA-1:cds;Parent=Msa1250900-mRNA-1
chr8_2 CDS 46638280 46638411 46638280 ID=Msa1250900-mRNA-1:cds;Parent=Msa1250900-mRNA-1
Gene Sequence

>Msa1250900

ATGCGGATACAACAGGTTGAAGAGCTAGTACTAGCAAGGTGTTACAGAATCTGTTTGAAAATACCTGTGGATAATTCTACAGGTACTGATAACGCAGACATGATTTGCTTATATGCTTGTCCATGGTGGAAAGAGAGAGAGACTCTGAGTAGAAAAGGGCACTTAACTCTTGACAAAACTTCTATACCGTGGCTGCATGGGTTTAAAATTTTCACACAAAAGTCACCCAAGCCCAATACTCAAAGAAGCCAAAATGCTTCATTTCACCCTAAGCCTAGCATTCCCTTTTCGAAGCAAAAGCCACAAATCTATTTCGCCTAA

Protein sequence

>Msa1250900

MRIQQVEELVLARCYRICLKIPVDNSTGTDNADMICLYACPWWKERETLSRKGHLTLDKTSIPWLHGFKIFTQKSPKPNTQRSQNASFHPKPSIPFSKQKPQIYFA*