AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1197420


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 20 sgRNAs with CRISPR-Local

Find 320 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGGGTGAAATGAAGCATTT+TGG 0.270338 8_1:+47733804 None:intergenic
CTTCTTTGAGTATTGGGCTT+GGG 0.368437 8_1:+47733827 None:intergenic
GCTTCTTTGAGTATTGGGCT+TGG 0.396597 8_1:+47733826 None:intergenic
AGAGAGACTCTGAGTAGAAA+AGG 0.398060 8_1:-47734074 Msa1197420:CDS
TTCCTTTGTAGTGGCTGCAT+GGG 0.408759 8_1:-47733874 Msa1197420:intron
GAAAAGGGAATGCTAGGCTT+AGG 0.432057 8_1:+47733785 None:intergenic
ATTCCTTTGTAGTGGCTGCA+TGG 0.459322 8_1:-47733875 Msa1197420:intron
ATACCTGTGGTTAATTCTAC+AGG 0.493908 8_1:-47735578 Msa1197420:CDS
TGCTTCGAAAAGGGAATGCT+AGG 0.499690 8_1:+47733779 None:intergenic
AAAAGGGAATGCTAGGCTTA+GGG 0.501721 8_1:+47733786 None:intergenic
ATTTAGGCGAAATAGATTTG+TGG 0.527706 8_1:+47733752 None:intergenic
TCTTGACAAAACTTCTATAC+CGG 0.540282 8_1:-47734042 Msa1197420:intron
GAGAGACTCTGAGTAGAAAA+GGG 0.545878 8_1:-47734073 Msa1197420:CDS
TTGAAGAGCTAGTACTAGCA+AGG 0.602140 8_1:-47735622 Msa1197420:CDS
TCTGCAGATATGCTTGTCCA+TGG 0.622203 8_1:-47734106 Msa1197420:intron
GTCTCTCTCTCTTTCCACCA+TGG 0.623417 8_1:+47734089 None:intergenic
AGGTACTGATAACGCAGCCA+TGG 0.625249 8_1:-47735558 Msa1197420:intron
AATCTGTTTGAAAATACCTG+TGG 0.652336 8_1:-47735591 Msa1197420:CDS
GCAGATATGCTTGTCCATGG+TGG 0.660110 8_1:-47734103 Msa1197420:intron
GTACCTGTAGAATTAACCAC+AGG 0.687914 8_1:+47735575 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATCAGAGAAATTTATTTT+GGG + chr8_1:47735099-47735118 None:intergenic 15.0%
!!! ATAATCAGAGAAATTTATTT+TGG + chr8_1:47735100-47735119 None:intergenic 15.0%
!!! TTCAATGTTAAAATTGTTTT+AGG - chr8_1:47735421-47735440 Msa1197420:intron 15.0%
!!! CTAATAAGTAATATCTTTTA+AGG - chr8_1:47735463-47735482 Msa1197420:intron 15.0%
!!! TAATCAGAGAAATTTATTTT+GGG + chr8_1:47735099-47735118 None:intergenic 15.0%
!!! ATAATCAGAGAAATTTATTT+TGG + chr8_1:47735100-47735119 None:intergenic 15.0%
!!! TTCAATGTTAAAATTGTTTT+AGG - chr8_1:47735421-47735440 Msa1197420:intron 15.0%
!!! CTAATAAGTAATATCTTTTA+AGG - chr8_1:47735463-47735482 Msa1197420:intron 15.0%
!!! TTCTATCATAAACCATATTT+TGG - chr8_1:47734330-47734349 Msa1197420:intron 20.0%
!! AGATTTAGAGATTAATAAGT+TGG + chr8_1:47734357-47734376 None:intergenic 20.0%
!! ATAATTTATGGTTGAACAAA+AGG + chr8_1:47734717-47734736 None:intergenic 20.0%
!! GATATCTATTTCATAGAAAA+TGG + chr8_1:47734847-47734866 None:intergenic 20.0%
!!! ATATTCATAGAAGTTACTTT+AGG + chr8_1:47734899-47734918 None:intergenic 20.0%
!! CTTCTATGAATATAGTTTAA+CGG - chr8_1:47734906-47734925 Msa1197420:intron 20.0%
!! AAGATATTACTTATTAGAAC+AGG + chr8_1:47735460-47735479 None:intergenic 20.0%
!!! TTCTATCATAAACCATATTT+TGG - chr8_1:47734330-47734349 Msa1197420:intron 20.0%
!! AGATTTAGAGATTAATAAGT+TGG + chr8_1:47734357-47734376 None:intergenic 20.0%
!! ATAATTTATGGTTGAACAAA+AGG + chr8_1:47734717-47734736 None:intergenic 20.0%
!! GATATCTATTTCATAGAAAA+TGG + chr8_1:47734847-47734866 None:intergenic 20.0%
!!! ATATTCATAGAAGTTACTTT+AGG + chr8_1:47734899-47734918 None:intergenic 20.0%
!! CTTCTATGAATATAGTTTAA+CGG - chr8_1:47734906-47734925 Msa1197420:intron 20.0%
!! AAGATATTACTTATTAGAAC+AGG + chr8_1:47735460-47735479 None:intergenic 20.0%
!! CGGATGTTATTTATAAGAAA+GGG - chr8_1:47733757-47733776 Msa1197420:CDS 25.0%
! TTTGATGTTAAAATGGTTTC+TGG - chr8_1:47733820-47733839 Msa1197420:CDS 25.0%
! TGGTTTATGATAGAAGATTA+TGG + chr8_1:47734325-47734344 None:intergenic 25.0%
!! TAATAAGTTGGACCAAAATA+TGG + chr8_1:47734345-47734364 None:intergenic 25.0%
! TTCAACCATAAATTATGTTG+TGG - chr8_1:47734721-47734740 Msa1197420:intron 25.0%
! TCAACCATAAATTATGTTGT+GGG - chr8_1:47734722-47734741 Msa1197420:intron 25.0%
! TGAAATAGATATCTACACTA+CGG - chr8_1:47734854-47734873 Msa1197420:intron 25.0%
!! TATTTAGATTTGCTTGTACA+TGG - chr8_1:47735156-47735175 Msa1197420:intron 25.0%
! TATAAGTATATAGTTTCCTC+AGG + chr8_1:47735222-47735241 None:intergenic 25.0%
! AAACTATATACTTATAGCCT+TGG - chr8_1:47735226-47735245 Msa1197420:intron 25.0%
! ATATTTGAATAGAGAACTAG+AGG - chr8_1:47735269-47735288 Msa1197420:intron 25.0%
! TATTTGAATAGAGAACTAGA+GGG - chr8_1:47735270-47735289 Msa1197420:intron 25.0%
! ACGTTAACACATTTCATATT+AGG - chr8_1:47735487-47735506 Msa1197420:intron 25.0%
! AAATTGATATACAAGACTAC+CGG + chr8_1:47735694-47735713 None:intergenic 25.0%
! TTGTATATCAATTTACTGCT+GGG - chr8_1:47735700-47735719 Msa1197420:intron 25.0%
! CCTATTCATAAAGTAGATTT+GGG + chr8_1:47735771-47735790 None:intergenic 25.0%
! ACCTATTCATAAAGTAGATT+TGG + chr8_1:47735772-47735791 None:intergenic 25.0%
! ACTTTATGAATAGGTTTAGA+AGG - chr8_1:47735777-47735796 Msa1197420:intron 25.0%
!! CGGATGTTATTTATAAGAAA+GGG - chr8_1:47733757-47733776 Msa1197420:CDS 25.0%
! TTTGATGTTAAAATGGTTTC+TGG - chr8_1:47733820-47733839 Msa1197420:CDS 25.0%
! TGGTTTATGATAGAAGATTA+TGG + chr8_1:47734325-47734344 None:intergenic 25.0%
!! TAATAAGTTGGACCAAAATA+TGG + chr8_1:47734345-47734364 None:intergenic 25.0%
! TTCAACCATAAATTATGTTG+TGG - chr8_1:47734721-47734740 Msa1197420:intron 25.0%
! TCAACCATAAATTATGTTGT+GGG - chr8_1:47734722-47734741 Msa1197420:intron 25.0%
! TGAAATAGATATCTACACTA+CGG - chr8_1:47734854-47734873 Msa1197420:intron 25.0%
!! TATTTAGATTTGCTTGTACA+TGG - chr8_1:47735156-47735175 Msa1197420:intron 25.0%
! TATAAGTATATAGTTTCCTC+AGG + chr8_1:47735222-47735241 None:intergenic 25.0%
! AAACTATATACTTATAGCCT+TGG - chr8_1:47735226-47735245 Msa1197420:intron 25.0%
! ATATTTGAATAGAGAACTAG+AGG - chr8_1:47735269-47735288 Msa1197420:intron 25.0%
! TATTTGAATAGAGAACTAGA+GGG - chr8_1:47735270-47735289 Msa1197420:intron 25.0%
! ACGTTAACACATTTCATATT+AGG - chr8_1:47735487-47735506 Msa1197420:intron 25.0%
! AAATTGATATACAAGACTAC+CGG + chr8_1:47735694-47735713 None:intergenic 25.0%
! TTGTATATCAATTTACTGCT+GGG - chr8_1:47735700-47735719 Msa1197420:intron 25.0%
! CCTATTCATAAAGTAGATTT+GGG + chr8_1:47735771-47735790 None:intergenic 25.0%
! ACCTATTCATAAAGTAGATT+TGG + chr8_1:47735772-47735791 None:intergenic 25.0%
! ACTTTATGAATAGGTTTAGA+AGG - chr8_1:47735777-47735796 Msa1197420:intron 25.0%
! GCGGATGTTATTTATAAGAA+AGG - chr8_1:47733756-47733775 Msa1197420:CDS 30.0%
GTCTTTGATGTAAATGCATA+TGG - chr8_1:47733787-47733806 Msa1197420:CDS 30.0%
TGATGTAAATGCATATGGTT+TGG - chr8_1:47733792-47733811 Msa1197420:CDS 30.0%
AGAACTAATTAGAAAAGGTG+TGG + chr8_1:47733855-47733874 None:intergenic 30.0%
!!! ACCTTTTCTAATTAGTTCTG+AGG - chr8_1:47733856-47733875 Msa1197420:CDS 30.0%
ACCTCAGAACTAATTAGAAA+AGG + chr8_1:47733860-47733879 None:intergenic 30.0%
AATCTGTTTGAAAATACCTG+TGG - chr8_1:47734123-47734142 Msa1197420:intron 30.0%
ATACTTCCTCATAGATAACA+TGG - chr8_1:47734519-47734538 Msa1197420:intron 30.0%
ATTTATGGTTGAACAAAAGG+AGG + chr8_1:47734714-47734733 None:intergenic 30.0%
AGATCCCACAACATAATTTA+TGG + chr8_1:47734729-47734748 None:intergenic 30.0%
ACAGATGAAAGATAGAAAGA+GGG + chr8_1:47734756-47734775 None:intergenic 30.0%
AACAGATGAAAGATAGAAAG+AGG + chr8_1:47734757-47734776 None:intergenic 30.0%
TCCAACAATAATTTGACTGT+GGG + chr8_1:47734800-47734819 None:intergenic 30.0%
TTCCAACAATAATTTGACTG+TGG + chr8_1:47734801-47734820 None:intergenic 30.0%
ATTTCCCAAATGAAACAAGT+CGG + chr8_1:47735135-47735154 None:intergenic 30.0%
TAACAATCATTTAACTCCTG+AGG - chr8_1:47735203-47735222 Msa1197420:intron 30.0%
!! AAAAAATGGATTGATGTCCA+AGG + chr8_1:47735246-47735265 None:intergenic 30.0%
! AAATGCTAACCATTTGAGAT+AGG + chr8_1:47735311-47735330 None:intergenic 30.0%
ACACAATGACAAGAAATAGA+AGG + chr8_1:47735344-47735363 None:intergenic 30.0%
!!! TGTCATTGTGTTGTTTTGTT+TGG - chr8_1:47735353-47735372 Msa1197420:intron 30.0%
TATGTTGAATGCAGATGAAT+AGG - chr8_1:47735393-47735412 Msa1197420:intron 30.0%
TCTTGACAAAACTTCTATAC+CGG - chr8_1:47735672-47735691 Msa1197420:intron 30.0%
CTTGTATATCAATTTACTGC+TGG - chr8_1:47735699-47735718 Msa1197420:intron 30.0%
TGTATATCAATTTACTGCTG+GGG - chr8_1:47735701-47735720 Msa1197420:intron 30.0%
TTCATAAAGTAGATTTGGGA+AGG + chr8_1:47735767-47735786 None:intergenic 30.0%
CCCAAATCTACTTTATGAAT+AGG - chr8_1:47735768-47735787 Msa1197420:intron 30.0%
!!! TTTTGGCTTCTTTGAGTATT+GGG + chr8_1:47735896-47735915 None:intergenic 30.0%
!!! ATTTTGGCTTCTTTGAGTAT+TGG + chr8_1:47735897-47735916 None:intergenic 30.0%
! GCGGATGTTATTTATAAGAA+AGG - chr8_1:47733756-47733775 Msa1197420:CDS 30.0%
GTCTTTGATGTAAATGCATA+TGG - chr8_1:47733787-47733806 Msa1197420:CDS 30.0%
TGATGTAAATGCATATGGTT+TGG - chr8_1:47733792-47733811 Msa1197420:CDS 30.0%
AGAACTAATTAGAAAAGGTG+TGG + chr8_1:47733855-47733874 None:intergenic 30.0%
!!! ACCTTTTCTAATTAGTTCTG+AGG - chr8_1:47733856-47733875 Msa1197420:CDS 30.0%
ACCTCAGAACTAATTAGAAA+AGG + chr8_1:47733860-47733879 None:intergenic 30.0%
AATCTGTTTGAAAATACCTG+TGG - chr8_1:47734123-47734142 Msa1197420:intron 30.0%
ATACTTCCTCATAGATAACA+TGG - chr8_1:47734519-47734538 Msa1197420:intron 30.0%
ATTTATGGTTGAACAAAAGG+AGG + chr8_1:47734714-47734733 None:intergenic 30.0%
AGATCCCACAACATAATTTA+TGG + chr8_1:47734729-47734748 None:intergenic 30.0%
ACAGATGAAAGATAGAAAGA+GGG + chr8_1:47734756-47734775 None:intergenic 30.0%
AACAGATGAAAGATAGAAAG+AGG + chr8_1:47734757-47734776 None:intergenic 30.0%
TCCAACAATAATTTGACTGT+GGG + chr8_1:47734800-47734819 None:intergenic 30.0%
TTCCAACAATAATTTGACTG+TGG + chr8_1:47734801-47734820 None:intergenic 30.0%
ATTTCCCAAATGAAACAAGT+CGG + chr8_1:47735135-47735154 None:intergenic 30.0%
TAACAATCATTTAACTCCTG+AGG - chr8_1:47735203-47735222 Msa1197420:intron 30.0%
!! AAAAAATGGATTGATGTCCA+AGG + chr8_1:47735246-47735265 None:intergenic 30.0%
! AAATGCTAACCATTTGAGAT+AGG + chr8_1:47735311-47735330 None:intergenic 30.0%
ACACAATGACAAGAAATAGA+AGG + chr8_1:47735344-47735363 None:intergenic 30.0%
!!! TGTCATTGTGTTGTTTTGTT+TGG - chr8_1:47735353-47735372 Msa1197420:intron 30.0%
TATGTTGAATGCAGATGAAT+AGG - chr8_1:47735393-47735412 Msa1197420:intron 30.0%
TCTTGACAAAACTTCTATAC+CGG - chr8_1:47735672-47735691 Msa1197420:intron 30.0%
CTTGTATATCAATTTACTGC+TGG - chr8_1:47735699-47735718 Msa1197420:intron 30.0%
TGTATATCAATTTACTGCTG+GGG - chr8_1:47735701-47735720 Msa1197420:intron 30.0%
TTCATAAAGTAGATTTGGGA+AGG + chr8_1:47735767-47735786 None:intergenic 30.0%
CCCAAATCTACTTTATGAAT+AGG - chr8_1:47735768-47735787 Msa1197420:intron 30.0%
!!! TTTTGGCTTCTTTGAGTATT+GGG + chr8_1:47735896-47735915 None:intergenic 30.0%
!!! ATTTTGGCTTCTTTGAGTAT+TGG + chr8_1:47735897-47735916 None:intergenic 30.0%
! TGTAAATGCATATGGTTTGG+AGG - chr8_1:47733795-47733814 Msa1197420:CDS 35.0%
! GTAAATGCATATGGTTTGGA+GGG - chr8_1:47733796-47733815 Msa1197420:CDS 35.0%
!! GGAGGGTTTTGATGTTAAAA+TGG - chr8_1:47733813-47733832 Msa1197420:CDS 35.0%
! TGTTAAAATGGTTTCTGGAG+AGG - chr8_1:47733825-47733844 Msa1197420:CDS 35.0%
! TAGCTTTTAGATCAGACAAC+AGG - chr8_1:47734069-47734088 Msa1197420:CDS 35.0%
ATACCTGTGGTTAATTCTAC+AGG - chr8_1:47734136-47734155 Msa1197420:intron 35.0%
! TCACCTTTTTCTCAAACAAG+AGG + chr8_1:47734200-47734219 None:intergenic 35.0%
! AAATGCAGAGTTTCTAAGGA+AGG + chr8_1:47734230-47734249 None:intergenic 35.0%
TCCTTAGAAACTCTGCATTT+AGG - chr8_1:47734230-47734249 Msa1197420:intron 35.0%
CCTTAGAAACTCTGCATTTA+GGG - chr8_1:47734231-47734250 Msa1197420:intron 35.0%
GTTTGCAAATTTCACTGAGA+AGG + chr8_1:47734473-47734492 None:intergenic 35.0%
TATGTGTATGTATGTGTGTG+TGG + chr8_1:47734502-47734521 None:intergenic 35.0%
AGGGTAATTTCACAATGACA+GGG + chr8_1:47734611-47734630 None:intergenic 35.0%
AAGGGTAATTTCACAATGAC+AGG + chr8_1:47734612-47734631 None:intergenic 35.0%
TCATTGTGAAATTACCCTTG+CGG - chr8_1:47734613-47734632 Msa1197420:intron 35.0%
CATCAACAAAATCTGTGCAA+AGG + chr8_1:47734640-47734659 None:intergenic 35.0%
AAAACAGAAGAGGTTCACAA+AGG + chr8_1:47734666-47734685 None:intergenic 35.0%
! TCTGTTTTGTGTCTGAGAAA+AGG - chr8_1:47734678-47734697 Msa1197420:intron 35.0%
CAGATGAAAGATAGAAAGAG+GGG + chr8_1:47734755-47734774 None:intergenic 35.0%
TCCCACAGTCAAATTATTGT+TGG - chr8_1:47734796-47734815 Msa1197420:intron 35.0%
GATTTAGATATGCTTGTCCA+TGG - chr8_1:47734958-47734977 Msa1197420:intron 35.0%
AGCGCACAAATTAATGATGT+GGG + chr8_1:47735053-47735072 None:intergenic 35.0%
TAGCGCACAAATTAATGATG+TGG + chr8_1:47735054-47735073 None:intergenic 35.0%
!! TCATTAATTTGTGCGCTACT+TGG - chr8_1:47735056-47735075 Msa1197420:intron 35.0%
TTTCCCAAATGAAACAAGTC+GGG + chr8_1:47735134-47735153 None:intergenic 35.0%
! TTAGATTTGCTTGTACATGG+TGG - chr8_1:47735159-47735178 Msa1197420:intron 35.0%
ACTCACTATCCTATCTCAAA+TGG - chr8_1:47735299-47735318 Msa1197420:intron 35.0%
AGACAGCATCTCAGATAATT+TGG + chr8_1:47735522-47735541 None:intergenic 35.0%
ATACTAAACAGAGAGAAGAG+TGG - chr8_1:47735728-47735747 Msa1197420:intron 35.0%
ACTACAAAGGAATAACTCCA+AGG + chr8_1:47735832-47735851 None:intergenic 35.0%
TTGGAGTTATTCCTTTGTAG+TGG - chr8_1:47735831-47735850 Msa1197420:intron 35.0%
!! TAGGGTGAAATGAAGCATTT+TGG + chr8_1:47735913-47735932 None:intergenic 35.0%
! TGTAAATGCATATGGTTTGG+AGG - chr8_1:47733795-47733814 Msa1197420:CDS 35.0%
! GTAAATGCATATGGTTTGGA+GGG - chr8_1:47733796-47733815 Msa1197420:CDS 35.0%
!! GGAGGGTTTTGATGTTAAAA+TGG - chr8_1:47733813-47733832 Msa1197420:CDS 35.0%
! TGTTAAAATGGTTTCTGGAG+AGG - chr8_1:47733825-47733844 Msa1197420:CDS 35.0%
! TAGCTTTTAGATCAGACAAC+AGG - chr8_1:47734069-47734088 Msa1197420:CDS 35.0%
ATACCTGTGGTTAATTCTAC+AGG - chr8_1:47734136-47734155 Msa1197420:intron 35.0%
! TCACCTTTTTCTCAAACAAG+AGG + chr8_1:47734200-47734219 None:intergenic 35.0%
! AAATGCAGAGTTTCTAAGGA+AGG + chr8_1:47734230-47734249 None:intergenic 35.0%
TCCTTAGAAACTCTGCATTT+AGG - chr8_1:47734230-47734249 Msa1197420:intron 35.0%
CCTTAGAAACTCTGCATTTA+GGG - chr8_1:47734231-47734250 Msa1197420:intron 35.0%
GTTTGCAAATTTCACTGAGA+AGG + chr8_1:47734473-47734492 None:intergenic 35.0%
TATGTGTATGTATGTGTGTG+TGG + chr8_1:47734502-47734521 None:intergenic 35.0%
AGGGTAATTTCACAATGACA+GGG + chr8_1:47734611-47734630 None:intergenic 35.0%
AAGGGTAATTTCACAATGAC+AGG + chr8_1:47734612-47734631 None:intergenic 35.0%
TCATTGTGAAATTACCCTTG+CGG - chr8_1:47734613-47734632 Msa1197420:intron 35.0%
CATCAACAAAATCTGTGCAA+AGG + chr8_1:47734640-47734659 None:intergenic 35.0%
AAAACAGAAGAGGTTCACAA+AGG + chr8_1:47734666-47734685 None:intergenic 35.0%
! TCTGTTTTGTGTCTGAGAAA+AGG - chr8_1:47734678-47734697 Msa1197420:intron 35.0%
CAGATGAAAGATAGAAAGAG+GGG + chr8_1:47734755-47734774 None:intergenic 35.0%
TCCCACAGTCAAATTATTGT+TGG - chr8_1:47734796-47734815 Msa1197420:intron 35.0%
GATTTAGATATGCTTGTCCA+TGG - chr8_1:47734958-47734977 Msa1197420:intron 35.0%
AGCGCACAAATTAATGATGT+GGG + chr8_1:47735053-47735072 None:intergenic 35.0%
TAGCGCACAAATTAATGATG+TGG + chr8_1:47735054-47735073 None:intergenic 35.0%
!! TCATTAATTTGTGCGCTACT+TGG - chr8_1:47735056-47735075 Msa1197420:intron 35.0%
TTTCCCAAATGAAACAAGTC+GGG + chr8_1:47735134-47735153 None:intergenic 35.0%
! TTAGATTTGCTTGTACATGG+TGG - chr8_1:47735159-47735178 Msa1197420:intron 35.0%
ACTCACTATCCTATCTCAAA+TGG - chr8_1:47735299-47735318 Msa1197420:intron 35.0%
AGACAGCATCTCAGATAATT+TGG + chr8_1:47735522-47735541 None:intergenic 35.0%
ATACTAAACAGAGAGAAGAG+TGG - chr8_1:47735728-47735747 Msa1197420:intron 35.0%
ACTACAAAGGAATAACTCCA+AGG + chr8_1:47735832-47735851 None:intergenic 35.0%
TTGGAGTTATTCCTTTGTAG+TGG - chr8_1:47735831-47735850 Msa1197420:intron 35.0%
!! TAGGGTGAAATGAAGCATTT+TGG + chr8_1:47735913-47735932 None:intergenic 35.0%
TTGAAGAGCTAGTACTAGCA+AGG - chr8_1:47734092-47734111 Msa1197420:CDS 40.0%
GTACCTGTAGAATTAACCAC+AGG + chr8_1:47734142-47734161 None:intergenic 40.0%
! CTGCCTCTTGTTTGAGAAAA+AGG - chr8_1:47734194-47734213 Msa1197420:intron 40.0%
CCCTAAATGCAGAGTTTCTA+AGG + chr8_1:47734234-47734253 None:intergenic 40.0%
TCACTGCCATGTTATCTATG+AGG + chr8_1:47734528-47734547 None:intergenic 40.0%
! ATGTGTGAAGAGTTGTTTCC+TGG - chr8_1:47734575-47734594 Msa1197420:intron 40.0%
TCTCAGACACAAAACAGAAG+AGG + chr8_1:47734676-47734695 None:intergenic 40.0%
ACTACGGATTTCATGTGAAG+TGG - chr8_1:47734870-47734889 Msa1197420:intron 40.0%
TTAGATATGCTTGTCCATGG+TGG - chr8_1:47734961-47734980 Msa1197420:intron 40.0%
! CAGTTTTTCTCTTTCCACCA+TGG + chr8_1:47734978-47734997 None:intergenic 40.0%
TCATAGTGCAGGATAAGGAA+TGG + chr8_1:47735009-47735028 None:intergenic 40.0%
TGCTATCATAGTGCAGGATA+AGG + chr8_1:47735014-47735033 None:intergenic 40.0%
! TGTACCCGACTTGTTTCATT+TGG - chr8_1:47735127-47735146 Msa1197420:intron 40.0%
! GTACCCGACTTGTTTCATTT+GGG - chr8_1:47735128-47735147 Msa1197420:intron 40.0%
! TTTGCTTGTACATGGTGGAA+AGG - chr8_1:47735164-47735183 Msa1197420:intron 40.0%
! TTGCTTGTACATGGTGGAAA+GGG - chr8_1:47735165-47735184 Msa1197420:intron 40.0%
GAATAGAGAACTAGAGGGTT+TGG - chr8_1:47735275-47735294 Msa1197420:intron 40.0%
GTTGAATGCAGATGAATAGG+AGG - chr8_1:47735396-47735415 Msa1197420:intron 40.0%
AGAGAGACTCTGAGTAGAAA+AGG - chr8_1:47735640-47735659 Msa1197420:intron 40.0%
GAGAGACTCTGAGTAGAAAA+GGG - chr8_1:47735641-47735660 Msa1197420:intron 40.0%
!! CTTCTTTGAGTATTGGGCTT+GGG + chr8_1:47735890-47735909 None:intergenic 40.0%
AAAAGGGAATGCTAGGCTTA+GGG + chr8_1:47735931-47735950 None:intergenic 40.0%
! TGTGGCTTTTGCTTCGAAAA+GGG + chr8_1:47735947-47735966 None:intergenic 40.0%
! TTGTGGCTTTTGCTTCGAAA+AGG + chr8_1:47735948-47735967 None:intergenic 40.0%
TTGAAGAGCTAGTACTAGCA+AGG - chr8_1:47734092-47734111 Msa1197420:CDS 40.0%
GTACCTGTAGAATTAACCAC+AGG + chr8_1:47734142-47734161 None:intergenic 40.0%
! CTGCCTCTTGTTTGAGAAAA+AGG - chr8_1:47734194-47734213 Msa1197420:intron 40.0%
CCCTAAATGCAGAGTTTCTA+AGG + chr8_1:47734234-47734253 None:intergenic 40.0%
TCACTGCCATGTTATCTATG+AGG + chr8_1:47734528-47734547 None:intergenic 40.0%
! ATGTGTGAAGAGTTGTTTCC+TGG - chr8_1:47734575-47734594 Msa1197420:intron 40.0%
TCTCAGACACAAAACAGAAG+AGG + chr8_1:47734676-47734695 None:intergenic 40.0%
ACTACGGATTTCATGTGAAG+TGG - chr8_1:47734870-47734889 Msa1197420:intron 40.0%
TTAGATATGCTTGTCCATGG+TGG - chr8_1:47734961-47734980 Msa1197420:intron 40.0%
! CAGTTTTTCTCTTTCCACCA+TGG + chr8_1:47734978-47734997 None:intergenic 40.0%
TCATAGTGCAGGATAAGGAA+TGG + chr8_1:47735009-47735028 None:intergenic 40.0%
TGCTATCATAGTGCAGGATA+AGG + chr8_1:47735014-47735033 None:intergenic 40.0%
! TGTACCCGACTTGTTTCATT+TGG - chr8_1:47735127-47735146 Msa1197420:intron 40.0%
! GTACCCGACTTGTTTCATTT+GGG - chr8_1:47735128-47735147 Msa1197420:intron 40.0%
! TTTGCTTGTACATGGTGGAA+AGG - chr8_1:47735164-47735183 Msa1197420:intron 40.0%
! TTGCTTGTACATGGTGGAAA+GGG - chr8_1:47735165-47735184 Msa1197420:intron 40.0%
GAATAGAGAACTAGAGGGTT+TGG - chr8_1:47735275-47735294 Msa1197420:intron 40.0%
GTTGAATGCAGATGAATAGG+AGG - chr8_1:47735396-47735415 Msa1197420:intron 40.0%
AGAGAGACTCTGAGTAGAAA+AGG - chr8_1:47735640-47735659 Msa1197420:intron 40.0%
GAGAGACTCTGAGTAGAAAA+GGG - chr8_1:47735641-47735660 Msa1197420:intron 40.0%
!! CTTCTTTGAGTATTGGGCTT+GGG + chr8_1:47735890-47735909 None:intergenic 40.0%
AAAAGGGAATGCTAGGCTTA+GGG + chr8_1:47735931-47735950 None:intergenic 40.0%
! TGTGGCTTTTGCTTCGAAAA+GGG + chr8_1:47735947-47735966 None:intergenic 40.0%
! TTGTGGCTTTTGCTTCGAAA+AGG + chr8_1:47735948-47735967 None:intergenic 40.0%
! GTTGCTCGATAGAGAGTACA+AGG - chr8_1:47734028-47734047 Msa1197420:intron 45.0%
GTACAAGGTGGCTATGATGT+TGG - chr8_1:47734043-47734062 Msa1197420:CDS 45.0%
AGAAGAGAAGAGTCTCACCA+TGG + chr8_1:47734176-47734195 None:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+GGG - chr8_1:47734275-47734294 Msa1197420:intron 45.0%
! AAGCCTTATCCCACTAAGTG+GGG - chr8_1:47734276-47734295 Msa1197420:intron 45.0%
! ACCTATCTCTCTGAGGATGA+AGG + chr8_1:47734403-47734422 None:intergenic 45.0%
TTCATCCTCAGAGAGATAGG+TGG - chr8_1:47734402-47734421 Msa1197420:intron 45.0%
! TGAAGAGTTGTTTCCTGGTG+AGG - chr8_1:47734580-47734599 Msa1197420:intron 45.0%
TGCAGGATAAGGAATGGTGT+GGG + chr8_1:47735003-47735022 None:intergenic 45.0%
CACAGATGCTATCATAGTGC+AGG + chr8_1:47735020-47735039 None:intergenic 45.0%
TCTGCAGATATGCTTGTCCA+TGG - chr8_1:47735608-47735627 Msa1197420:CDS 45.0%
ATTCCTTTGTAGTGGCTGCA+TGG - chr8_1:47735839-47735858 Msa1197420:intron 45.0%
TTCCTTTGTAGTGGCTGCAT+GGG - chr8_1:47735840-47735859 Msa1197420:intron 45.0%
!! GCTTCTTTGAGTATTGGGCT+TGG + chr8_1:47735891-47735910 None:intergenic 45.0%
GAAAAGGGAATGCTAGGCTT+AGG + chr8_1:47735932-47735951 None:intergenic 45.0%
TGCTTCGAAAAGGGAATGCT+AGG + chr8_1:47735938-47735957 None:intergenic 45.0%
! GTTGCTCGATAGAGAGTACA+AGG - chr8_1:47734028-47734047 Msa1197420:intron 45.0%
GTACAAGGTGGCTATGATGT+TGG - chr8_1:47734043-47734062 Msa1197420:CDS 45.0%
AGAAGAGAAGAGTCTCACCA+TGG + chr8_1:47734176-47734195 None:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+GGG - chr8_1:47734275-47734294 Msa1197420:intron 45.0%
! AAGCCTTATCCCACTAAGTG+GGG - chr8_1:47734276-47734295 Msa1197420:intron 45.0%
! ACCTATCTCTCTGAGGATGA+AGG + chr8_1:47734403-47734422 None:intergenic 45.0%
TTCATCCTCAGAGAGATAGG+TGG - chr8_1:47734402-47734421 Msa1197420:intron 45.0%
! TGAAGAGTTGTTTCCTGGTG+AGG - chr8_1:47734580-47734599 Msa1197420:intron 45.0%
TGCAGGATAAGGAATGGTGT+GGG + chr8_1:47735003-47735022 None:intergenic 45.0%
CACAGATGCTATCATAGTGC+AGG + chr8_1:47735020-47735039 None:intergenic 45.0%
TCTGCAGATATGCTTGTCCA+TGG - chr8_1:47735608-47735627 Msa1197420:CDS 45.0%
ATTCCTTTGTAGTGGCTGCA+TGG - chr8_1:47735839-47735858 Msa1197420:intron 45.0%
TTCCTTTGTAGTGGCTGCAT+GGG - chr8_1:47735840-47735859 Msa1197420:intron 45.0%
!! GCTTCTTTGAGTATTGGGCT+TGG + chr8_1:47735891-47735910 None:intergenic 45.0%
GAAAAGGGAATGCTAGGCTT+AGG + chr8_1:47735932-47735951 None:intergenic 45.0%
TGCTTCGAAAAGGGAATGCT+AGG + chr8_1:47735938-47735957 None:intergenic 45.0%
!! TATTCAAATATATAAAAAAA+TGG + chr8_1:47735260-47735279 None:intergenic 5.0%
!! TATTCAAATATATAAAAAAA+TGG + chr8_1:47735260-47735279 None:intergenic 5.0%
! GCTCGATAGAGAGTACAAGG+TGG - chr8_1:47734031-47734050 Msa1197420:intron 50.0%
!! AGGTACTGATAACGCAGCCA+TGG - chr8_1:47734156-47734175 Msa1197420:intron 50.0%
CCACTTAGTGGGATAAGGCT+TGG + chr8_1:47734277-47734296 None:intergenic 50.0%
! CCAAGCCTTATCCCACTAAG+TGG - chr8_1:47734274-47734293 Msa1197420:intron 50.0%
CTTATCCCACTAAGTGGGGT+CGG - chr8_1:47734280-47734299 Msa1197420:intron 50.0%
GCCTTCATCCTCAGAGAGAT+AGG - chr8_1:47734399-47734418 Msa1197420:intron 50.0%
ATCTGTGCAAAGGACCGCAA+GGG + chr8_1:47734630-47734649 None:intergenic 50.0%
AATCTGTGCAAAGGACCGCA+AGG + chr8_1:47734631-47734650 None:intergenic 50.0%
GTGCAGGATAAGGAATGGTG+TGG + chr8_1:47735004-47735023 None:intergenic 50.0%
GCAGATATGCTTGTCCATGG+TGG - chr8_1:47735611-47735630 Msa1197420:CDS 50.0%
GTCTCTCTCTCTTTCCACCA+TGG + chr8_1:47735628-47735647 None:intergenic 50.0%
GAGAGAAGAGTGGACGTCTT+AGG - chr8_1:47735738-47735757 Msa1197420:intron 50.0%
AACTCCAAGGATCATGCTCC+CGG + chr8_1:47735819-47735838 None:intergenic 50.0%
AACCCATGCAGCCACTACAA+AGG + chr8_1:47735845-47735864 None:intergenic 50.0%
! GCTCGATAGAGAGTACAAGG+TGG - chr8_1:47734031-47734050 Msa1197420:intron 50.0%
!! AGGTACTGATAACGCAGCCA+TGG - chr8_1:47734156-47734175 Msa1197420:intron 50.0%
CCACTTAGTGGGATAAGGCT+TGG + chr8_1:47734277-47734296 None:intergenic 50.0%
! CCAAGCCTTATCCCACTAAG+TGG - chr8_1:47734274-47734293 Msa1197420:intron 50.0%
CTTATCCCACTAAGTGGGGT+CGG - chr8_1:47734280-47734299 Msa1197420:intron 50.0%
GCCTTCATCCTCAGAGAGAT+AGG - chr8_1:47734399-47734418 Msa1197420:intron 50.0%
ATCTGTGCAAAGGACCGCAA+GGG + chr8_1:47734630-47734649 None:intergenic 50.0%
AATCTGTGCAAAGGACCGCA+AGG + chr8_1:47734631-47734650 None:intergenic 50.0%
GTGCAGGATAAGGAATGGTG+TGG + chr8_1:47735004-47735023 None:intergenic 50.0%
GCAGATATGCTTGTCCATGG+TGG - chr8_1:47735611-47735630 Msa1197420:CDS 50.0%
GTCTCTCTCTCTTTCCACCA+TGG + chr8_1:47735628-47735647 None:intergenic 50.0%
GAGAGAAGAGTGGACGTCTT+AGG - chr8_1:47735738-47735757 Msa1197420:intron 50.0%
AACTCCAAGGATCATGCTCC+CGG + chr8_1:47735819-47735838 None:intergenic 50.0%
AACCCATGCAGCCACTACAA+AGG + chr8_1:47735845-47735864 None:intergenic 50.0%
CGACCCCACTTAGTGGGATA+AGG + chr8_1:47734282-47734301 None:intergenic 55.0%
TGTAGCCGACCCCACTTAGT+GGG + chr8_1:47734288-47734307 None:intergenic 55.0%
ATGTAGCCGACCCCACTTAG+TGG + chr8_1:47734289-47734308 None:intergenic 55.0%
ACTAAGTGGGGTCGGCTACA+TGG - chr8_1:47734288-47734307 Msa1197420:intron 55.0%
CAGAGAGGTGACAGCTCTCA+CGG + chr8_1:47734428-47734447 None:intergenic 55.0%
GTGAGAGCTGTCACCTCTCT+GGG - chr8_1:47734427-47734446 Msa1197420:intron 55.0%
ACTTGCACGTCAACCCAGAG+AGG + chr8_1:47734443-47734462 None:intergenic 55.0%
AGGAGCCATTGTCTGATCCC+CGG - chr8_1:47735797-47735816 Msa1197420:intron 55.0%
ACTCCAAGGATCATGCTCCC+GGG + chr8_1:47735818-47735837 None:intergenic 55.0%
CGACCCCACTTAGTGGGATA+AGG + chr8_1:47734282-47734301 None:intergenic 55.0%
TGTAGCCGACCCCACTTAGT+GGG + chr8_1:47734288-47734307 None:intergenic 55.0%
ATGTAGCCGACCCCACTTAG+TGG + chr8_1:47734289-47734308 None:intergenic 55.0%
ACTAAGTGGGGTCGGCTACA+TGG - chr8_1:47734288-47734307 Msa1197420:intron 55.0%
CAGAGAGGTGACAGCTCTCA+CGG + chr8_1:47734428-47734447 None:intergenic 55.0%
GTGAGAGCTGTCACCTCTCT+GGG - chr8_1:47734427-47734446 Msa1197420:intron 55.0%
ACTTGCACGTCAACCCAGAG+AGG + chr8_1:47734443-47734462 None:intergenic 55.0%
AGGAGCCATTGTCTGATCCC+CGG - chr8_1:47735797-47735816 Msa1197420:intron 55.0%
ACTCCAAGGATCATGCTCCC+GGG + chr8_1:47735818-47735837 None:intergenic 55.0%
CACGGCCACCTATCTCTCTG+AGG + chr8_1:47734410-47734429 None:intergenic 60.0%
CGTGAGAGCTGTCACCTCTC+TGG - chr8_1:47734426-47734445 Msa1197420:intron 60.0%
TGACAGGGAGTCACCTCACC+AGG + chr8_1:47734596-47734615 None:intergenic 60.0%
GGAGCCATTGTCTGATCCCC+GGG - chr8_1:47735798-47735817 Msa1197420:intron 60.0%
TGCTCCCGGGGATCAGACAA+TGG + chr8_1:47735805-47735824 None:intergenic 60.0%
! ATCCCCGGGAGCATGATCCT+TGG - chr8_1:47735812-47735831 Msa1197420:intron 60.0%
CTCCAAGGATCATGCTCCCG+GGG + chr8_1:47735817-47735836 None:intergenic 60.0%
CACGGCCACCTATCTCTCTG+AGG + chr8_1:47734410-47734429 None:intergenic 60.0%
CGTGAGAGCTGTCACCTCTC+TGG - chr8_1:47734426-47734445 Msa1197420:intron 60.0%
TGACAGGGAGTCACCTCACC+AGG + chr8_1:47734596-47734615 None:intergenic 60.0%
GGAGCCATTGTCTGATCCCC+GGG - chr8_1:47735798-47735817 Msa1197420:intron 60.0%
TGCTCCCGGGGATCAGACAA+TGG + chr8_1:47735805-47735824 None:intergenic 60.0%
! ATCCCCGGGAGCATGATCCT+TGG - chr8_1:47735812-47735831 Msa1197420:intron 60.0%
CTCCAAGGATCATGCTCCCG+GGG + chr8_1:47735817-47735836 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 47733754 47735982 47733754 ID=Msa1197420;Name=Msa1197420
chr8_1 mRNA 47733754 47735982 47733754 ID=Msa1197420-mRNA-1;Parent=Msa1197420;Name=Msa1197420-mRNA-1;_AED=0.47;_eAED=0.48;_QI=0|0|0|0.8|0|0.2|5|0|106
chr8_1 exon 47735975 47735982 47735975 ID=Msa1197420-mRNA-1:exon:15182;Parent=Msa1197420-mRNA-1
chr8_1 exon 47735559 47735652 47735559 ID=Msa1197420-mRNA-1:exon:15181;Parent=Msa1197420-mRNA-1
chr8_1 exon 47734566 47734573 47734566 ID=Msa1197420-mRNA-1:exon:15180;Parent=Msa1197420-mRNA-1
chr8_1 exon 47734043 47734121 47734043 ID=Msa1197420-mRNA-1:exon:15179;Parent=Msa1197420-mRNA-1
chr8_1 exon 47733754 47733885 47733754 ID=Msa1197420-mRNA-1:exon:15178;Parent=Msa1197420-mRNA-1
chr8_1 CDS 47735975 47735982 47735975 ID=Msa1197420-mRNA-1:cds;Parent=Msa1197420-mRNA-1
chr8_1 CDS 47735559 47735652 47735559 ID=Msa1197420-mRNA-1:cds;Parent=Msa1197420-mRNA-1
chr8_1 CDS 47734566 47734573 47734566 ID=Msa1197420-mRNA-1:cds;Parent=Msa1197420-mRNA-1
chr8_1 CDS 47734043 47734121 47734043 ID=Msa1197420-mRNA-1:cds;Parent=Msa1197420-mRNA-1
chr8_1 CDS 47733754 47733885 47733754 ID=Msa1197420-mRNA-1:cds;Parent=Msa1197420-mRNA-1
Gene Sequence

>Msa1197420

ATGCGGATACAACAGGTTGAAGAGCTAGTACTAGCAAGGTGTTACAGAATCTGTTTGAAAATACCTGTGGTTAATTCTACAGGTACTGATAACGCAGCCATGATTTGCTTATATGCTTGTCCATGGTGGAAAGAGAGAGAGACTCTGAGTAGAAAAGGGCACTTAACTCTTGACAAAACTTCTATACCGTGGCTGCATGGGTTTAAAATTTTCACACAAAAGTCACCCAAGCCCAATACTCAAAGAAGCCAAAATGCTTCATTTCACCCTAAGCCTAGCATTCCCTTTTCGAAGCAAAAGCCACAAATCTATTTCGCCTAA

Protein sequence

>Msa1197420

MRIQQVEELVLARCYRICLKIPVVNSTGTDNAAMICLYACPWWKERETLSRKGHLTLDKTSIPWLHGFKIFTQKSPKPNTQRSQNASFHPKPSIPFSKQKPQIYFA*