AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1253230

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1253230 MtrunA17_Chr8g0369831 85.000 160 10 4 1 146 1 160 6.82e-47 151
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 106 sgRNAs with CRISPR-Local

Find 382 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGGGCTGCTGCCGCTGCTTA+TGG 0.203164 8_2:-50617883 Msa1253230:CDS
AGAGAAAGAAATTGAGAAAT+TGG 0.208810 8_2:+50619555 None:intergenic
TATGAACTGAAGTTTGTTAA+TGG 0.209657 8_2:-50617352 Msa1253230:three_prime_UTR
AGAAATTGGAAATTGGAAAT+TGG 0.225455 8_2:+50619569 None:intergenic
GAAATTGAGAAATTGGAAAT+TGG 0.251767 8_2:+50619562 None:intergenic
GGTATTGGAGGAATGCTTGC+TGG 0.278390 8_2:-50617904 Msa1253230:CDS
CTAATAAACTATACTTCTTA+TGG 0.296140 8_2:-50617584 Msa1253230:three_prime_UTR
TGGTGTATGTTCATCATATT+AGG 0.319959 8_2:-50617564 Msa1253230:three_prime_UTR
TTGAGCAAGTCTTGAGGTAT+TGG 0.326848 8_2:-50617485 Msa1253230:three_prime_UTR
ATGAGGATCAAAACACATTA+AGG 0.331729 8_2:+50617421 None:intergenic
TTTAATTTGGTTTGAAAGAT+GGG 0.350902 8_2:-50619284 Msa1253230:exon
TCTCATGGACATGGCGGTAT+TGG 0.367332 8_2:-50617919 Msa1253230:CDS
AAGTTCAAGCATGGAAAGTT+TGG 0.376559 8_2:-50617709 Msa1253230:CDS
TACCCACCTGCTGGTTATCC+TGG 0.395132 8_2:-50619056 Msa1253230:CDS
GTATTGGAGGAATGCTTGCT+GGG 0.396362 8_2:-50617903 Msa1253230:CDS
ATGATGAATCTTCTGACAAA+GGG 0.447450 8_2:-50619244 Msa1253230:CDS
CACGGCGCTCACGGTTATCC+AGG 0.457573 8_2:-50617835 Msa1253230:CDS
CATGGAAAGTTTGGCAAACA+TGG 0.462196 8_2:-50617700 Msa1253230:CDS
TTGGAAATTGGAAATTGGAA+TGG 0.472309 8_2:+50619574 None:intergenic
ATGGAAGAGAAGAGAGAAAG+AGG 0.474270 8_2:+50619593 None:intergenic
GGTTATCCTGGTGCACATGC+TGG 0.475046 8_2:-50619044 Msa1253230:CDS
TTGAAAGATGGGTGGTGGTA+AGG 0.476340 8_2:-50619273 Msa1253230:exon
CAAGCAGCATGGCAAGTTCA+AGG 0.481456 8_2:-50617746 Msa1253230:CDS
GCTGCTGCACATGGTGGACA+TGG 0.487101 8_2:-50619188 Msa1253230:CDS
AATTTCTTTCTCTTATTCAA+AGG 0.490969 8_2:-50619545 Msa1253230:intron
TGGCAGTCACATGGGTCACA+TGG 0.491218 8_2:-50617782 Msa1253230:CDS
CATGGTGCTCACGGCGCTCA+CGG 0.491903 8_2:-50617844 Msa1253230:CDS
TGGAAGAGAAGAGAGAAAGA+GGG 0.493050 8_2:+50619594 None:intergenic
CATGGACATGGCGGTATTGG+AGG 0.493065 8_2:-50617916 Msa1253230:CDS
CAACAAGGTTATCCACCTGC+TGG 0.498616 8_2:-50619131 Msa1253230:CDS
GTGAGCGCCGTGAGCACCAT+GGG 0.499573 8_2:+50617846 None:intergenic
TGTGATCATGTAAAACTTAG+CGG 0.509561 8_2:-50617315 Msa1253230:three_prime_UTR
AATCTTGCTCAAGGTATAGC+TGG 0.509568 8_2:-50619212 Msa1253230:CDS
CATGTCTCCCATGGTGCTCA+CGG 0.510395 8_2:-50617853 Msa1253230:CDS
CACATGGGTCACATGGGCCA+TGG 0.513380 8_2:-50617775 Msa1253230:CDS
TTGTTATCACCAGGGTCTCA+TGG 0.517186 8_2:-50617934 Msa1253230:intron
TTATCCAGGTGGCTACCCAC+AGG 0.520728 8_2:-50617821 Msa1253230:CDS
AAACATGGTGGAGGCAAGCA+CGG 0.522918 8_2:-50617685 Msa1253230:CDS
TGCACATGGTGGCAGTCACA+TGG 0.523193 8_2:-50617791 Msa1253230:CDS
AACATGGTGGAGGCAAGCAC+GGG 0.529522 8_2:-50617684 Msa1253230:CDS
TGTTGACCAGCATGTGCACC+AGG 0.531075 8_2:+50619038 None:intergenic
TTGGTTTGAAAGATGGGTGG+TGG 0.539015 8_2:-50619278 Msa1253230:exon
CATGATGAATCTTCTGACAA+AGG 0.545311 8_2:-50619245 Msa1253230:CDS
GTTCAATGAAACATGTAATG+AGG 0.546717 8_2:+50617404 None:intergenic
GGCACTCACCATGTCTCCCA+TGG 0.551274 8_2:-50617862 Msa1253230:CDS
CAACAAGGGTACCCACCTGC+TGG 0.551446 8_2:-50619065 Msa1253230:CDS
GCAAGCACGGGTTCAAGAAG+TGG 0.551612 8_2:-50617672 Msa1253230:CDS
CGTGAGCACCATGGGAGACA+TGG 0.552868 8_2:+50617854 None:intergenic
AAGTTCAAGGGAGGCAAGCA+CGG 0.553480 8_2:-50617733 Msa1253230:CDS
ATAGCTGGTGCTGCTGCACA+TGG 0.559628 8_2:-50619197 Msa1253230:CDS
GTGGGTACCCTTGTTGAGGA+GGG 0.564480 8_2:+50619072 None:intergenic
CCACAGGGCGGCTATGCACA+TGG 0.565307 8_2:-50617805 Msa1253230:CDS
CCATGTGCATAGCCGCCCTG+TGG 0.566678 8_2:+50617805 None:intergenic
ACATCAATTTGTCAGTACTT+CGG 0.569792 8_2:+50617451 None:intergenic
GGTGGGTACCCTTGTTGAGG+AGG 0.571515 8_2:+50619071 None:intergenic
GGAGGACATGGTTACCCACC+TGG 0.572769 8_2:-50619167 Msa1253230:CDS
CATGTGCATAGCCGCCCTGT+GGG 0.579859 8_2:+50617806 None:intergenic
GGCAGTCACATGGGTCACAT+GGG 0.584120 8_2:-50617781 Msa1253230:CDS
GCAGGTGGATAACCTTGTTG+TGG 0.585819 8_2:+50619134 None:intergenic
AACAAGGTTATCCACCTGCT+GGG 0.589294 8_2:-50619130 Msa1253230:CDS
TGTGGAGGGTATGCACCAGG+TGG 0.591090 8_2:+50619152 None:intergenic
CGTGAGCGCCGTGAGCACCA+TGG 0.592595 8_2:+50617845 None:intergenic
GAGTGGAGACAAAGAGCGAA+AGG 0.595755 8_2:+50619652 None:intergenic
AAGCAGCATGGCAAGTTCAA+GGG 0.596135 8_2:-50617745 Msa1253230:CDS
TATCCAGGTGGCTACCCACA+GGG 0.596964 8_2:-50617820 Msa1253230:CDS
GGTGGATAACCTTGTTGTGG+AGG 0.597323 8_2:+50619137 None:intergenic
TGTTGTGGTGGATACCCAGC+AGG 0.597568 8_2:+50619116 None:intergenic
GCACATGCTGGTCAACATGC+TGG 0.600903 8_2:-50619032 Msa1253230:intron
GGAGGATAACCTTGTTGTGG+TGG 0.601274 8_2:+50619104 None:intergenic
GTAGCGTAGCGTTAATTGAG+TGG 0.603852 8_2:+50619635 None:intergenic
TCACCAGGGTCTCATGGACA+TGG 0.607441 8_2:-50617928 Msa1253230:intron
GTGGATAACCTTGTTGTGGA+GGG 0.609108 8_2:+50619138 None:intergenic
ATACCTCAAGACTTGCTCAA+AGG 0.609822 8_2:+50617488 None:intergenic
CATGGAAAATTCAAGCAGCA+TGG 0.610070 8_2:-50617757 Msa1253230:CDS
TGTGCACCAGGATAACCAGC+AGG 0.610864 8_2:+50619050 None:intergenic
AGTGGATACCCTCCTCAACA+AGG 0.611530 8_2:-50619080 Msa1253230:CDS
AAGTTTGGCAAACATGGTGG+AGG 0.614031 8_2:-50617694 Msa1253230:CDS
GCAGGTGGGTACCCTTGTTG+AGG 0.616351 8_2:+50619068 None:intergenic
CATGGTGGACATGGAGGACA+TGG 0.622620 8_2:-50619179 Msa1253230:CDS
CTAGGAGGATAACCTTGTTG+TGG 0.624899 8_2:+50619101 None:intergenic
TGTTGTGGAGGGTATGCACC+AGG 0.628769 8_2:+50619149 None:intergenic
TGTTGAGGAGGGTATCCACT+AGG 0.633295 8_2:+50619083 None:intergenic
GCACATGGTGGCAGTCACAT+GGG 0.634666 8_2:-50617790 Msa1253230:CDS
GATCCTTTGAGCAAGTCTTG+AGG 0.639257 8_2:-50617491 Msa1253230:three_prime_UTR
GGAAAGTTTGGCAAACATGG+TGG 0.640897 8_2:-50617697 Msa1253230:CDS
AAGCACGGCAAGTTCAAGCA+TGG 0.641118 8_2:-50617718 Msa1253230:CDS
GCACCAGGATAACCAGCAGG+TGG 0.647935 8_2:+50619053 None:intergenic
AATTTGGTTTGAAAGATGGG+TGG 0.648614 8_2:-50619281 Msa1253230:exon
GGTGCATACCCTCCACAACA+AGG 0.662307 8_2:-50619146 Msa1253230:CDS
CAGCATGGCAAGTTCAAGGG+AGG 0.663173 8_2:-50617742 Msa1253230:CDS
GTGGAGGGTATGCACCAGGT+GGG 0.665437 8_2:+50619153 None:intergenic
GCTGGTGCTGCTGCACATGG+TGG 0.665716 8_2:-50619194 Msa1253230:CDS
CACCAGGATAACCAGCAGGT+GGG 0.668962 8_2:+50619054 None:intergenic
CAACAAGGTTATCCTCCTAG+TGG 0.669414 8_2:-50619098 Msa1253230:CDS
GGCGCTCACGGTTATCCAGG+TGG 0.672720 8_2:-50617832 Msa1253230:CDS
GCTGGGTATCCACCACAACA+AGG 0.676592 8_2:-50619113 Msa1253230:CDS
TATTGGAGGAATGCTTGCTG+GGG 0.679060 8_2:-50617902 Msa1253230:CDS
GTGGATACCCTCCTCAACAA+GGG 0.684013 8_2:-50619079 Msa1253230:CDS
ATGGTGAGTGCCATAAGCAG+CGG 0.686078 8_2:+50617873 None:intergenic
TGAGGAGGGTATCCACTAGG+AGG 0.690182 8_2:+50619086 None:intergenic
TGTGGTGGATACCCAGCAGG+TGG 0.696982 8_2:+50619119 None:intergenic
TGATGAATCTTCTGACAAAG+GGG 0.700396 8_2:-50619243 Msa1253230:CDS
GCTGCACATGGTGGACATGG+AGG 0.714704 8_2:-50619185 Msa1253230:CDS
CAGGGCGGCTATGCACATGG+TGG 0.726204 8_2:-50617802 Msa1253230:CDS
CCAGGTGGCTACCCACAGGG+CGG 0.750960 8_2:-50617817 Msa1253230:CDS
CCAGGGTCTCATGGACATGG+CGG 0.758862 8_2:-50617925 Msa1253230:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATGAGTAAAAAACAATA+GGG + chr8_2:50617410-50617429 None:intergenic 15.0%
!!! TTGTAACAATTTGTAATTTT+TGG - chr8_2:50617602-50617621 Msa1253230:three_prime_UTR 15.0%
!!! AAAAAATTATCGAATTTGTT+AGG - chr8_2:50618288-50618307 Msa1253230:intron 15.0%
!! ATAATGAGTAAAAAACAATA+GGG + chr8_2:50617410-50617429 None:intergenic 15.0%
!!! TTGTAACAATTTGTAATTTT+TGG - chr8_2:50617602-50617621 Msa1253230:three_prime_UTR 15.0%
!!! AAAAAATTATCGAATTTGTT+AGG - chr8_2:50618288-50618307 Msa1253230:intron 15.0%
!! AATTTCTTTCTCTTATTCAA+AGG - chr8_2:50617378-50617397 Msa1253230:three_prime_UTR 20.0%
!! GATAATGAGTAAAAAACAAT+AGG + chr8_2:50617411-50617430 None:intergenic 20.0%
!!! TTTTAATTTGGTTTGAAAGA+TGG - chr8_2:50617638-50617657 Msa1253230:three_prime_UTR 20.0%
!!! TTTAATTTGGTTTGAAAGAT+GGG - chr8_2:50617639-50617658 Msa1253230:three_prime_UTR 20.0%
!! CAATAGAAAATCAATTTGAA+AGG + chr8_2:50617924-50617943 None:intergenic 20.0%
!!! CCATTTTTTCAAATTATCAT+CGG + chr8_2:50618019-50618038 None:intergenic 20.0%
!! CTAAAAACCTTAACAAAATA+AGG + chr8_2:50618347-50618366 None:intergenic 20.0%
!!! TAAGGTTTTTAGTGAAATTA+TGG - chr8_2:50618355-50618374 Msa1253230:intron 20.0%
!!! TCAGTTTATGAAATCTTTTT+AGG + chr8_2:50618777-50618796 None:intergenic 20.0%
!! CTAATAAACTATACTTCTTA+TGG - chr8_2:50619339-50619358 Msa1253230:intron 20.0%
!! AATTTCTTTCTCTTATTCAA+AGG - chr8_2:50617378-50617397 Msa1253230:three_prime_UTR 20.0%
!! GATAATGAGTAAAAAACAAT+AGG + chr8_2:50617411-50617430 None:intergenic 20.0%
!!! TTTTAATTTGGTTTGAAAGA+TGG - chr8_2:50617638-50617657 Msa1253230:three_prime_UTR 20.0%
!!! TTTAATTTGGTTTGAAAGAT+GGG - chr8_2:50617639-50617658 Msa1253230:three_prime_UTR 20.0%
!! CAATAGAAAATCAATTTGAA+AGG + chr8_2:50617924-50617943 None:intergenic 20.0%
!!! CCATTTTTTCAAATTATCAT+CGG + chr8_2:50618019-50618038 None:intergenic 20.0%
!! CTAAAAACCTTAACAAAATA+AGG + chr8_2:50618347-50618366 None:intergenic 20.0%
!!! TAAGGTTTTTAGTGAAATTA+TGG - chr8_2:50618355-50618374 Msa1253230:intron 20.0%
!!! TCAGTTTATGAAATCTTTTT+AGG + chr8_2:50618777-50618796 None:intergenic 20.0%
!! CTAATAAACTATACTTCTTA+TGG - chr8_2:50619339-50619358 Msa1253230:intron 20.0%
! AGAAATTGGAAATTGGAAAT+TGG + chr8_2:50617357-50617376 None:intergenic 25.0%
! GAAATTGAGAAATTGGAAAT+TGG + chr8_2:50617364-50617383 None:intergenic 25.0%
! AGAGAAAGAAATTGAGAAAT+TGG + chr8_2:50617371-50617390 None:intergenic 25.0%
! TTCACAAATTTGTCTTAGAT+TGG - chr8_2:50617533-50617552 Msa1253230:three_prime_UTR 25.0%
! AATTTGTCTTAGATTGGATT+AGG - chr8_2:50617539-50617558 Msa1253230:three_prime_UTR 25.0%
! ATTTGTCTTAGATTGGATTA+GGG - chr8_2:50617540-50617559 Msa1253230:three_prime_UTR 25.0%
! TCAGATCATAAAAACAAACA+TGG + chr8_2:50617577-50617596 None:intergenic 25.0%
!!! TTTGTAATTTTTGGATCATC+AGG - chr8_2:50617611-50617630 Msa1253230:three_prime_UTR 25.0%
!!! TCATCAGGTGTTTTTTAATT+TGG - chr8_2:50617626-50617645 Msa1253230:three_prime_UTR 25.0%
! TGTAATAATCAGTAACTACA+AGG + chr8_2:50617957-50617976 None:intergenic 25.0%
! CCGATGATAATTTGAAAAAA+TGG - chr8_2:50618016-50618035 Msa1253230:intron 25.0%
! ATTCAAATATACAAGTTGTC+AGG + chr8_2:50618088-50618107 None:intergenic 25.0%
! TAATTCATATGCTTCTAAGT+AGG + chr8_2:50618148-50618167 None:intergenic 25.0%
! GTATCATTGTATGTAAATTG+TGG + chr8_2:50618235-50618254 None:intergenic 25.0%
! TGATACTTACATACTAATTG+TGG - chr8_2:50618249-50618268 Msa1253230:intron 25.0%
! GATACTTACATACTAATTGT+GGG - chr8_2:50618250-50618269 Msa1253230:intron 25.0%
!!! TTATCGAATTTGTTAGGAAT+AGG - chr8_2:50618294-50618313 Msa1253230:intron 25.0%
!!! TATGAACTGAAGTTTGTTAA+TGG - chr8_2:50619571-50619590 Msa1253230:five_prime_UTR 25.0%
!! TAAGTTTTACATGATCACAT+AGG + chr8_2:50619607-50619626 None:intergenic 25.0%
! AGAAATTGGAAATTGGAAAT+TGG + chr8_2:50617357-50617376 None:intergenic 25.0%
! GAAATTGAGAAATTGGAAAT+TGG + chr8_2:50617364-50617383 None:intergenic 25.0%
! AGAGAAAGAAATTGAGAAAT+TGG + chr8_2:50617371-50617390 None:intergenic 25.0%
! TTCACAAATTTGTCTTAGAT+TGG - chr8_2:50617533-50617552 Msa1253230:three_prime_UTR 25.0%
! AATTTGTCTTAGATTGGATT+AGG - chr8_2:50617539-50617558 Msa1253230:three_prime_UTR 25.0%
! ATTTGTCTTAGATTGGATTA+GGG - chr8_2:50617540-50617559 Msa1253230:three_prime_UTR 25.0%
! TCAGATCATAAAAACAAACA+TGG + chr8_2:50617577-50617596 None:intergenic 25.0%
!!! TTTGTAATTTTTGGATCATC+AGG - chr8_2:50617611-50617630 Msa1253230:three_prime_UTR 25.0%
!!! TCATCAGGTGTTTTTTAATT+TGG - chr8_2:50617626-50617645 Msa1253230:three_prime_UTR 25.0%
! TGTAATAATCAGTAACTACA+AGG + chr8_2:50617957-50617976 None:intergenic 25.0%
! CCGATGATAATTTGAAAAAA+TGG - chr8_2:50618016-50618035 Msa1253230:intron 25.0%
! ATTCAAATATACAAGTTGTC+AGG + chr8_2:50618088-50618107 None:intergenic 25.0%
! TAATTCATATGCTTCTAAGT+AGG + chr8_2:50618148-50618167 None:intergenic 25.0%
! GTATCATTGTATGTAAATTG+TGG + chr8_2:50618235-50618254 None:intergenic 25.0%
! TGATACTTACATACTAATTG+TGG - chr8_2:50618249-50618268 Msa1253230:intron 25.0%
! GATACTTACATACTAATTGT+GGG - chr8_2:50618250-50618269 Msa1253230:intron 25.0%
!!! TTATCGAATTTGTTAGGAAT+AGG - chr8_2:50618294-50618313 Msa1253230:intron 25.0%
!!! TATGAACTGAAGTTTGTTAA+TGG - chr8_2:50619571-50619590 Msa1253230:five_prime_UTR 25.0%
!! TAAGTTTTACATGATCACAT+AGG + chr8_2:50619607-50619626 None:intergenic 25.0%
TTGGAAATTGGAAATTGGAA+TGG + chr8_2:50617352-50617371 None:intergenic 30.0%
ATGATGAATCTTCTGACAAA+GGG - chr8_2:50617679-50617698 Msa1253230:CDS 30.0%
GTATGTAAATTGTGGTTTCA+CGG + chr8_2:50618227-50618246 None:intergenic 30.0%
AATGAAGATTACAACAGAAC+AGG - chr8_2:50618320-50618339 Msa1253230:intron 30.0%
!!! AACAGGTCCTTATTTTGTTA+AGG - chr8_2:50618337-50618356 Msa1253230:intron 30.0%
TCTCTATAAACTACATCAAG+TGG - chr8_2:50618441-50618460 Msa1253230:intron 30.0%
!! GAGTTGATGGTTTGAATATT+TGG - chr8_2:50618469-50618488 Msa1253230:intron 30.0%
CTTAAAATGAGTATGCAATG+TGG - chr8_2:50618540-50618559 Msa1253230:intron 30.0%
CTTAAAAGAAACACTCAATG+CGG - chr8_2:50618578-50618597 Msa1253230:intron 30.0%
CTGAGACTTATTGAATTTGA+TGG - chr8_2:50618793-50618812 Msa1253230:intron 30.0%
AGACTTATTGAATTTGATGG+TGG - chr8_2:50618796-50618815 Msa1253230:intron 30.0%
! TTAGCAGGTTCAAATGATTT+TGG + chr8_2:50618958-50618977 None:intergenic 30.0%
TGGTGTATGTTCATCATATT+AGG - chr8_2:50619359-50619378 Msa1253230:intron 30.0%
ACATCAATTTGTCAGTACTT+CGG + chr8_2:50619475-50619494 None:intergenic 30.0%
ATGAGGATCAAAACACATTA+AGG + chr8_2:50619505-50619524 None:intergenic 30.0%
GTTCAATGAAACATGTAATG+AGG + chr8_2:50619522-50619541 None:intergenic 30.0%
TGTGATCATGTAAAACTTAG+CGG - chr8_2:50619608-50619627 Msa1253230:five_prime_UTR 30.0%
TTGGAAATTGGAAATTGGAA+TGG + chr8_2:50617352-50617371 None:intergenic 30.0%
ATGATGAATCTTCTGACAAA+GGG - chr8_2:50617679-50617698 Msa1253230:CDS 30.0%
GTATGTAAATTGTGGTTTCA+CGG + chr8_2:50618227-50618246 None:intergenic 30.0%
AATGAAGATTACAACAGAAC+AGG - chr8_2:50618320-50618339 Msa1253230:intron 30.0%
!!! AACAGGTCCTTATTTTGTTA+AGG - chr8_2:50618337-50618356 Msa1253230:intron 30.0%
TCTCTATAAACTACATCAAG+TGG - chr8_2:50618441-50618460 Msa1253230:intron 30.0%
!! GAGTTGATGGTTTGAATATT+TGG - chr8_2:50618469-50618488 Msa1253230:intron 30.0%
CTTAAAATGAGTATGCAATG+TGG - chr8_2:50618540-50618559 Msa1253230:intron 30.0%
CTTAAAAGAAACACTCAATG+CGG - chr8_2:50618578-50618597 Msa1253230:intron 30.0%
CTGAGACTTATTGAATTTGA+TGG - chr8_2:50618793-50618812 Msa1253230:intron 30.0%
AGACTTATTGAATTTGATGG+TGG - chr8_2:50618796-50618815 Msa1253230:intron 30.0%
! TTAGCAGGTTCAAATGATTT+TGG + chr8_2:50618958-50618977 None:intergenic 30.0%
TGGTGTATGTTCATCATATT+AGG - chr8_2:50619359-50619378 Msa1253230:intron 30.0%
ACATCAATTTGTCAGTACTT+CGG + chr8_2:50619475-50619494 None:intergenic 30.0%
ATGAGGATCAAAACACATTA+AGG + chr8_2:50619505-50619524 None:intergenic 30.0%
GTTCAATGAAACATGTAATG+AGG + chr8_2:50619522-50619541 None:intergenic 30.0%
TGTGATCATGTAAAACTTAG+CGG - chr8_2:50619608-50619627 Msa1253230:five_prime_UTR 30.0%
!! AATTTGGTTTGAAAGATGGG+TGG - chr8_2:50617642-50617661 Msa1253230:three_prime_UTR 35.0%
CATGATGAATCTTCTGACAA+AGG - chr8_2:50617678-50617697 Msa1253230:CDS 35.0%
TGATGAATCTTCTGACAAAG+GGG - chr8_2:50617680-50617699 Msa1253230:CDS 35.0%
! GTGTTTTCAAATCTTGCTCA+AGG - chr8_2:50617702-50617721 Msa1253230:CDS 35.0%
ATAAATGTAAGCACGTGTGT+CGG - chr8_2:50618044-50618063 Msa1253230:intron 35.0%
TTACAGCTGCAACAAAAATC+AGG + chr8_2:50618111-50618130 None:intergenic 35.0%
CTAATTGTGGGAGTTAAAAG+TGG - chr8_2:50618262-50618281 Msa1253230:intron 35.0%
ACATAGCCCATTATTCTGAT+AGG - chr8_2:50618494-50618513 Msa1253230:intron 35.0%
CAGCTACCTATCAGAATAAT+GGG + chr8_2:50618503-50618522 None:intergenic 35.0%
ACGACAACAAATCAACACAT+TGG + chr8_2:50618681-50618700 None:intergenic 35.0%
!! TGATTTGTTGTCGTGATTTG+TGG - chr8_2:50618687-50618706 Msa1253230:intron 35.0%
!!! TTGTCTCATTGGTGGATTTT+AGG - chr8_2:50618718-50618737 Msa1253230:intron 35.0%
TCAGTTGTTGAGAATTCCAA+GGG + chr8_2:50618746-50618765 None:intergenic 35.0%
ATCAGTTGTTGAGAATTCCA+AGG + chr8_2:50618747-50618766 None:intergenic 35.0%
TTAGATTTGTCGATGTCTTC+TGG - chr8_2:50618822-50618841 Msa1253230:intron 35.0%
ACAACAGTAGAAAACTTAGC+AGG + chr8_2:50618973-50618992 None:intergenic 35.0%
TTTCTACTGTTGTTATCACC+AGG - chr8_2:50618980-50618999 Msa1253230:intron 35.0%
TTCTACTGTTGTTATCACCA+GGG - chr8_2:50618981-50619000 Msa1253230:intron 35.0%
AAGTTCAAGCATGGAAAGTT+TGG - chr8_2:50619214-50619233 Msa1253230:CDS 35.0%
!!! GTTTTGCTATTTCAATGCAC+TGG - chr8_2:50619410-50619429 Msa1253230:intron 35.0%
!! AATTTGGTTTGAAAGATGGG+TGG - chr8_2:50617642-50617661 Msa1253230:three_prime_UTR 35.0%
CATGATGAATCTTCTGACAA+AGG - chr8_2:50617678-50617697 Msa1253230:CDS 35.0%
TGATGAATCTTCTGACAAAG+GGG - chr8_2:50617680-50617699 Msa1253230:CDS 35.0%
! GTGTTTTCAAATCTTGCTCA+AGG - chr8_2:50617702-50617721 Msa1253230:CDS 35.0%
ATAAATGTAAGCACGTGTGT+CGG - chr8_2:50618044-50618063 Msa1253230:intron 35.0%
TTACAGCTGCAACAAAAATC+AGG + chr8_2:50618111-50618130 None:intergenic 35.0%
CTAATTGTGGGAGTTAAAAG+TGG - chr8_2:50618262-50618281 Msa1253230:intron 35.0%
ACATAGCCCATTATTCTGAT+AGG - chr8_2:50618494-50618513 Msa1253230:intron 35.0%
CAGCTACCTATCAGAATAAT+GGG + chr8_2:50618503-50618522 None:intergenic 35.0%
ACGACAACAAATCAACACAT+TGG + chr8_2:50618681-50618700 None:intergenic 35.0%
!! TGATTTGTTGTCGTGATTTG+TGG - chr8_2:50618687-50618706 Msa1253230:intron 35.0%
!!! TTGTCTCATTGGTGGATTTT+AGG - chr8_2:50618718-50618737 Msa1253230:intron 35.0%
TCAGTTGTTGAGAATTCCAA+GGG + chr8_2:50618746-50618765 None:intergenic 35.0%
ATCAGTTGTTGAGAATTCCA+AGG + chr8_2:50618747-50618766 None:intergenic 35.0%
TTAGATTTGTCGATGTCTTC+TGG - chr8_2:50618822-50618841 Msa1253230:intron 35.0%
ACAACAGTAGAAAACTTAGC+AGG + chr8_2:50618973-50618992 None:intergenic 35.0%
TTTCTACTGTTGTTATCACC+AGG - chr8_2:50618980-50618999 Msa1253230:intron 35.0%
TTCTACTGTTGTTATCACCA+GGG - chr8_2:50618981-50619000 Msa1253230:intron 35.0%
AAGTTCAAGCATGGAAAGTT+TGG - chr8_2:50619214-50619233 Msa1253230:CDS 35.0%
!!! GTTTTGCTATTTCAATGCAC+TGG - chr8_2:50619410-50619429 Msa1253230:intron 35.0%
TGGAAGAGAAGAGAGAAAGA+GGG + chr8_2:50617332-50617351 None:intergenic 40.0%
ATGGAAGAGAAGAGAGAAAG+AGG + chr8_2:50617333-50617352 None:intergenic 40.0%
TCGCTAACGATGATGATCTA+TGG + chr8_2:50617459-50617478 None:intergenic 40.0%
AATCTTGCTCAAGGTATAGC+TGG - chr8_2:50617711-50617730 Msa1253230:CDS 40.0%
TCTATGAAACACTCACATCC+TGG - chr8_2:50617978-50617997 Msa1253230:intron 40.0%
! TGGTGTCAAGTCCTCAATAT+TGG - chr8_2:50618375-50618394 Msa1253230:intron 40.0%
CGAGCAACAAACCAATATTG+AGG + chr8_2:50618389-50618408 None:intergenic 40.0%
AGCGAGTGACCTAAACTAAT+GGG + chr8_2:50618413-50618432 None:intergenic 40.0%
AAGCGAGTGACCTAAACTAA+TGG + chr8_2:50618414-50618433 None:intergenic 40.0%
TCAAGTGGTATCAGAGTTGA+TGG - chr8_2:50618456-50618475 Msa1253230:intron 40.0%
CCAGCTACCTATCAGAATAA+TGG + chr8_2:50618504-50618523 None:intergenic 40.0%
CCATTATTCTGATAGGTAGC+TGG - chr8_2:50618501-50618520 Msa1253230:intron 40.0%
CAATGTGGAGACTCAAACTT+TGG - chr8_2:50618555-50618574 Msa1253230:intron 40.0%
TGGTTTACTGCTTGTCTCAT+TGG - chr8_2:50618707-50618726 Msa1253230:intron 40.0%
TTTACTGCTTGTCTCATTGG+TGG - chr8_2:50618710-50618729 Msa1253230:intron 40.0%
!! CATGCTGCTTGAATTTTCCA+TGG + chr8_2:50619168-50619187 None:intergenic 40.0%
CATGGAAAATTCAAGCAGCA+TGG - chr8_2:50619166-50619185 Msa1253230:CDS 40.0%
CATGGAAAGTTTGGCAAACA+TGG - chr8_2:50619223-50619242 Msa1253230:CDS 40.0%
! ATACCTCAAGACTTGCTCAA+AGG + chr8_2:50619438-50619457 None:intergenic 40.0%
TTGAGCAAGTCTTGAGGTAT+TGG - chr8_2:50619438-50619457 Msa1253230:intron 40.0%
TGGAAGAGAAGAGAGAAAGA+GGG + chr8_2:50617332-50617351 None:intergenic 40.0%
ATGGAAGAGAAGAGAGAAAG+AGG + chr8_2:50617333-50617352 None:intergenic 40.0%
TCGCTAACGATGATGATCTA+TGG + chr8_2:50617459-50617478 None:intergenic 40.0%
AATCTTGCTCAAGGTATAGC+TGG - chr8_2:50617711-50617730 Msa1253230:CDS 40.0%
TCTATGAAACACTCACATCC+TGG - chr8_2:50617978-50617997 Msa1253230:intron 40.0%
! TGGTGTCAAGTCCTCAATAT+TGG - chr8_2:50618375-50618394 Msa1253230:intron 40.0%
CGAGCAACAAACCAATATTG+AGG + chr8_2:50618389-50618408 None:intergenic 40.0%
AGCGAGTGACCTAAACTAAT+GGG + chr8_2:50618413-50618432 None:intergenic 40.0%
AAGCGAGTGACCTAAACTAA+TGG + chr8_2:50618414-50618433 None:intergenic 40.0%
TCAAGTGGTATCAGAGTTGA+TGG - chr8_2:50618456-50618475 Msa1253230:intron 40.0%
CCAGCTACCTATCAGAATAA+TGG + chr8_2:50618504-50618523 None:intergenic 40.0%
CCATTATTCTGATAGGTAGC+TGG - chr8_2:50618501-50618520 Msa1253230:intron 40.0%
CAATGTGGAGACTCAAACTT+TGG - chr8_2:50618555-50618574 Msa1253230:intron 40.0%
TGGTTTACTGCTTGTCTCAT+TGG - chr8_2:50618707-50618726 Msa1253230:intron 40.0%
TTTACTGCTTGTCTCATTGG+TGG - chr8_2:50618710-50618729 Msa1253230:intron 40.0%
!! CATGCTGCTTGAATTTTCCA+TGG + chr8_2:50619168-50619187 None:intergenic 40.0%
CATGGAAAATTCAAGCAGCA+TGG - chr8_2:50619166-50619185 Msa1253230:CDS 40.0%
CATGGAAAGTTTGGCAAACA+TGG - chr8_2:50619223-50619242 Msa1253230:CDS 40.0%
! ATACCTCAAGACTTGCTCAA+AGG + chr8_2:50619438-50619457 None:intergenic 40.0%
TTGAGCAAGTCTTGAGGTAT+TGG - chr8_2:50619438-50619457 Msa1253230:intron 40.0%
GTAGCGTAGCGTTAATTGAG+TGG + chr8_2:50617291-50617310 None:intergenic 45.0%
! TTGGTTTGAAAGATGGGTGG+TGG - chr8_2:50617645-50617664 Msa1253230:three_prime_UTR 45.0%
! TTGAAAGATGGGTGGTGGTA+AGG - chr8_2:50617650-50617669 Msa1253230:exon 45.0%
! GTGGATAACCTTGTTGTGGA+GGG + chr8_2:50617788-50617807 None:intergenic 45.0%
AACAAGGTTATCCACCTGCT+GGG - chr8_2:50617793-50617812 Msa1253230:CDS 45.0%
CTAGGAGGATAACCTTGTTG+TGG + chr8_2:50617825-50617844 None:intergenic 45.0%
CAACAAGGTTATCCTCCTAG+TGG - chr8_2:50617825-50617844 Msa1253230:CDS 45.0%
AAACACTCACATCCTGGCAT+TGG - chr8_2:50617984-50618003 Msa1253230:intron 45.0%
! TTGTGGTTTCACGGCTAGTT+CGG + chr8_2:50618218-50618237 None:intergenic 45.0%
! GTTGCTCGTCCCATTAGTTT+AGG - chr8_2:50618401-50618420 Msa1253230:intron 45.0%
TAGCTGGTGACTCGAGTATT+TGG - chr8_2:50618517-50618536 Msa1253230:intron 45.0%
!! TCCTGCACATTGGCTTGAAA+TGG - chr8_2:50618620-50618639 Msa1253230:intron 45.0%
TCCATTTCAAGCCAATGTGC+AGG + chr8_2:50618624-50618643 None:intergenic 45.0%
TTGTCGATGTCTTCTGGTGA+CGG - chr8_2:50618828-50618847 Msa1253230:intron 45.0%
TTGTTATCACCAGGGTCTCA+TGG - chr8_2:50618989-50619008 Msa1253230:intron 45.0%
GTATTGGAGGAATGCTTGCT+GGG - chr8_2:50619020-50619039 Msa1253230:intron 45.0%
! TATTGGAGGAATGCTTGCTG+GGG - chr8_2:50619021-50619040 Msa1253230:intron 45.0%
AAGCAGCATGGCAAGTTCAA+GGG - chr8_2:50619178-50619197 Msa1253230:CDS 45.0%
GGAAAGTTTGGCAAACATGG+TGG - chr8_2:50619226-50619245 Msa1253230:CDS 45.0%
AAGTTTGGCAAACATGGTGG+AGG - chr8_2:50619229-50619248 Msa1253230:CDS 45.0%
GATCCTTTGAGCAAGTCTTG+AGG - chr8_2:50619432-50619451 Msa1253230:intron 45.0%
GTAGCGTAGCGTTAATTGAG+TGG + chr8_2:50617291-50617310 None:intergenic 45.0%
! TTGGTTTGAAAGATGGGTGG+TGG - chr8_2:50617645-50617664 Msa1253230:three_prime_UTR 45.0%
! TTGAAAGATGGGTGGTGGTA+AGG - chr8_2:50617650-50617669 Msa1253230:exon 45.0%
! GTGGATAACCTTGTTGTGGA+GGG + chr8_2:50617788-50617807 None:intergenic 45.0%
AACAAGGTTATCCACCTGCT+GGG - chr8_2:50617793-50617812 Msa1253230:CDS 45.0%
CTAGGAGGATAACCTTGTTG+TGG + chr8_2:50617825-50617844 None:intergenic 45.0%
CAACAAGGTTATCCTCCTAG+TGG - chr8_2:50617825-50617844 Msa1253230:CDS 45.0%
AAACACTCACATCCTGGCAT+TGG - chr8_2:50617984-50618003 Msa1253230:intron 45.0%
! TTGTGGTTTCACGGCTAGTT+CGG + chr8_2:50618218-50618237 None:intergenic 45.0%
! GTTGCTCGTCCCATTAGTTT+AGG - chr8_2:50618401-50618420 Msa1253230:intron 45.0%
TAGCTGGTGACTCGAGTATT+TGG - chr8_2:50618517-50618536 Msa1253230:intron 45.0%
!! TCCTGCACATTGGCTTGAAA+TGG - chr8_2:50618620-50618639 Msa1253230:intron 45.0%
TCCATTTCAAGCCAATGTGC+AGG + chr8_2:50618624-50618643 None:intergenic 45.0%
TTGTCGATGTCTTCTGGTGA+CGG - chr8_2:50618828-50618847 Msa1253230:intron 45.0%
TTGTTATCACCAGGGTCTCA+TGG - chr8_2:50618989-50619008 Msa1253230:intron 45.0%
GTATTGGAGGAATGCTTGCT+GGG - chr8_2:50619020-50619039 Msa1253230:intron 45.0%
! TATTGGAGGAATGCTTGCTG+GGG - chr8_2:50619021-50619040 Msa1253230:intron 45.0%
AAGCAGCATGGCAAGTTCAA+GGG - chr8_2:50619178-50619197 Msa1253230:CDS 45.0%
GGAAAGTTTGGCAAACATGG+TGG - chr8_2:50619226-50619245 Msa1253230:CDS 45.0%
AAGTTTGGCAAACATGGTGG+AGG - chr8_2:50619229-50619248 Msa1253230:CDS 45.0%
GATCCTTTGAGCAAGTCTTG+AGG - chr8_2:50619432-50619451 Msa1253230:intron 45.0%
!! AAAAAAAAAAAAAAAAACAA+GGG + chr8_2:50619386-50619405 None:intergenic 5.0%
!! AAAAAAAAAAAAAAAAAACA+AGG + chr8_2:50619387-50619406 None:intergenic 5.0%
!! AAAAAAAAAAAAAAAAACAA+GGG + chr8_2:50619386-50619405 None:intergenic 5.0%
!! AAAAAAAAAAAAAAAAAACA+AGG + chr8_2:50619387-50619406 None:intergenic 5.0%
GAGTGGAGACAAAGAGCGAA+AGG + chr8_2:50617274-50617293 None:intergenic 50.0%
! GGTGGATAACCTTGTTGTGG+AGG + chr8_2:50617789-50617808 None:intergenic 50.0%
GCAGGTGGATAACCTTGTTG+TGG + chr8_2:50617792-50617811 None:intergenic 50.0%
CAACAAGGTTATCCACCTGC+TGG - chr8_2:50617792-50617811 Msa1253230:CDS 50.0%
! GGAGGATAACCTTGTTGTGG+TGG + chr8_2:50617822-50617841 None:intergenic 50.0%
!! TGTTGAGGAGGGTATCCACT+AGG + chr8_2:50617843-50617862 None:intergenic 50.0%
AGTGGATACCCTCCTCAACA+AGG - chr8_2:50617843-50617862 Msa1253230:CDS 50.0%
GTGGATACCCTCCTCAACAA+GGG - chr8_2:50617844-50617863 Msa1253230:CDS 50.0%
! GTTTCACGGCTAGTTCGGTA+TGG + chr8_2:50618213-50618232 None:intergenic 50.0%
TCAATGCGGAGACTCCAACT+TGG - chr8_2:50618592-50618611 Msa1253230:intron 50.0%
!!! TGGTGGATTTTAGGCTCCCT+TGG - chr8_2:50618727-50618746 Msa1253230:intron 50.0%
!!! TCTGGTGACGGTTTTGCACT+CGG - chr8_2:50618840-50618859 Msa1253230:intron 50.0%
TCTCATGGACATGGCGGTAT+TGG - chr8_2:50619004-50619023 Msa1253230:intron 50.0%
! GGTATTGGAGGAATGCTTGC+TGG - chr8_2:50619019-50619038 Msa1253230:intron 50.0%
ATGGTGAGTGCCATAAGCAG+CGG + chr8_2:50619053-50619072 None:intergenic 50.0%
CAAGCAGCATGGCAAGTTCA+AGG - chr8_2:50619177-50619196 Msa1253230:CDS 50.0%
AAGTTCAAGGGAGGCAAGCA+CGG - chr8_2:50619190-50619209 Msa1253230:CDS 50.0%
AAGCACGGCAAGTTCAAGCA+TGG - chr8_2:50619205-50619224 Msa1253230:CDS 50.0%
! AAACATGGTGGAGGCAAGCA+CGG - chr8_2:50619238-50619257 Msa1253230:CDS 50.0%
GAGTGGAGACAAAGAGCGAA+AGG + chr8_2:50617274-50617293 None:intergenic 50.0%
! GGTGGATAACCTTGTTGTGG+AGG + chr8_2:50617789-50617808 None:intergenic 50.0%
GCAGGTGGATAACCTTGTTG+TGG + chr8_2:50617792-50617811 None:intergenic 50.0%
CAACAAGGTTATCCACCTGC+TGG - chr8_2:50617792-50617811 Msa1253230:CDS 50.0%
! GGAGGATAACCTTGTTGTGG+TGG + chr8_2:50617822-50617841 None:intergenic 50.0%
!! TGTTGAGGAGGGTATCCACT+AGG + chr8_2:50617843-50617862 None:intergenic 50.0%
AGTGGATACCCTCCTCAACA+AGG - chr8_2:50617843-50617862 Msa1253230:CDS 50.0%
GTGGATACCCTCCTCAACAA+GGG - chr8_2:50617844-50617863 Msa1253230:CDS 50.0%
! GTTTCACGGCTAGTTCGGTA+TGG + chr8_2:50618213-50618232 None:intergenic 50.0%
TCAATGCGGAGACTCCAACT+TGG - chr8_2:50618592-50618611 Msa1253230:intron 50.0%
!!! TGGTGGATTTTAGGCTCCCT+TGG - chr8_2:50618727-50618746 Msa1253230:intron 50.0%
!!! TCTGGTGACGGTTTTGCACT+CGG - chr8_2:50618840-50618859 Msa1253230:intron 50.0%
TCTCATGGACATGGCGGTAT+TGG - chr8_2:50619004-50619023 Msa1253230:intron 50.0%
! GGTATTGGAGGAATGCTTGC+TGG - chr8_2:50619019-50619038 Msa1253230:intron 50.0%
ATGGTGAGTGCCATAAGCAG+CGG + chr8_2:50619053-50619072 None:intergenic 50.0%
CAAGCAGCATGGCAAGTTCA+AGG - chr8_2:50619177-50619196 Msa1253230:CDS 50.0%
AAGTTCAAGGGAGGCAAGCA+CGG - chr8_2:50619190-50619209 Msa1253230:CDS 50.0%
AAGCACGGCAAGTTCAAGCA+TGG - chr8_2:50619205-50619224 Msa1253230:CDS 50.0%
! AAACATGGTGGAGGCAAGCA+CGG - chr8_2:50619238-50619257 Msa1253230:CDS 50.0%
!! ATAGCTGGTGCTGCTGCACA+TGG - chr8_2:50617726-50617745 Msa1253230:CDS 55.0%
!! CATGGTGGACATGGAGGACA+TGG - chr8_2:50617744-50617763 Msa1253230:CDS 55.0%
! TGTTGTGGAGGGTATGCACC+AGG + chr8_2:50617777-50617796 None:intergenic 55.0%
GGTGCATACCCTCCACAACA+AGG - chr8_2:50617777-50617796 Msa1253230:CDS 55.0%
!! TGTTGTGGTGGATACCCAGC+AGG + chr8_2:50617810-50617829 None:intergenic 55.0%
GCTGGGTATCCACCACAACA+AGG - chr8_2:50617810-50617829 Msa1253230:CDS 55.0%
!! TGAGGAGGGTATCCACTAGG+AGG + chr8_2:50617840-50617859 None:intergenic 55.0%
GTGGGTACCCTTGTTGAGGA+GGG + chr8_2:50617854-50617873 None:intergenic 55.0%
! TACCCACCTGCTGGTTATCC+TGG - chr8_2:50617867-50617886 Msa1253230:CDS 55.0%
CACCAGGATAACCAGCAGGT+GGG + chr8_2:50617872-50617891 None:intergenic 55.0%
TGTGCACCAGGATAACCAGC+AGG + chr8_2:50617876-50617895 None:intergenic 55.0%
GGTTATCCTGGTGCACATGC+TGG - chr8_2:50617879-50617898 Msa1253230:CDS 55.0%
TGTTGACCAGCATGTGCACC+AGG + chr8_2:50617888-50617907 None:intergenic 55.0%
GCACATGCTGGTCAACATGC+TGG - chr8_2:50617891-50617910 Msa1253230:CDS 55.0%
! TCACGGCTAGTTCGGTATGG+TGG + chr8_2:50618210-50618229 None:intergenic 55.0%
ATGCGGAGACTCCAACTTGG+AGG - chr8_2:50618595-50618614 Msa1253230:intron 55.0%
TGCGGAGACTCCAACTTGGA+GGG - chr8_2:50618596-50618615 Msa1253230:intron 55.0%
TCACCAGGGTCTCATGGACA+TGG - chr8_2:50618995-50619014 Msa1253230:intron 55.0%
! CATGGACATGGCGGTATTGG+AGG - chr8_2:50619007-50619026 Msa1253230:intron 55.0%
CATGTCTCCCATGGTGCTCA+CGG - chr8_2:50619070-50619089 Msa1253230:CDS 55.0%
TTATCCAGGTGGCTACCCAC+AGG - chr8_2:50619102-50619121 Msa1253230:CDS 55.0%
TATCCAGGTGGCTACCCACA+GGG - chr8_2:50619103-50619122 Msa1253230:CDS 55.0%
TGCACATGGTGGCAGTCACA+TGG - chr8_2:50619132-50619151 Msa1253230:CDS 55.0%
GCACATGGTGGCAGTCACAT+GGG - chr8_2:50619133-50619152 Msa1253230:CDS 55.0%
TGGCAGTCACATGGGTCACA+TGG - chr8_2:50619141-50619160 Msa1253230:CDS 55.0%
GGCAGTCACATGGGTCACAT+GGG - chr8_2:50619142-50619161 Msa1253230:CDS 55.0%
CAGCATGGCAAGTTCAAGGG+AGG - chr8_2:50619181-50619200 Msa1253230:CDS 55.0%
! AACATGGTGGAGGCAAGCAC+GGG - chr8_2:50619239-50619258 Msa1253230:CDS 55.0%
GCAAGCACGGGTTCAAGAAG+TGG - chr8_2:50619251-50619270 Msa1253230:CDS 55.0%
!! ATAGCTGGTGCTGCTGCACA+TGG - chr8_2:50617726-50617745 Msa1253230:CDS 55.0%
!! CATGGTGGACATGGAGGACA+TGG - chr8_2:50617744-50617763 Msa1253230:CDS 55.0%
! TGTTGTGGAGGGTATGCACC+AGG + chr8_2:50617777-50617796 None:intergenic 55.0%
GGTGCATACCCTCCACAACA+AGG - chr8_2:50617777-50617796 Msa1253230:CDS 55.0%
!! TGTTGTGGTGGATACCCAGC+AGG + chr8_2:50617810-50617829 None:intergenic 55.0%
GCTGGGTATCCACCACAACA+AGG - chr8_2:50617810-50617829 Msa1253230:CDS 55.0%
!! TGAGGAGGGTATCCACTAGG+AGG + chr8_2:50617840-50617859 None:intergenic 55.0%
GTGGGTACCCTTGTTGAGGA+GGG + chr8_2:50617854-50617873 None:intergenic 55.0%
! TACCCACCTGCTGGTTATCC+TGG - chr8_2:50617867-50617886 Msa1253230:CDS 55.0%
CACCAGGATAACCAGCAGGT+GGG + chr8_2:50617872-50617891 None:intergenic 55.0%
TGTGCACCAGGATAACCAGC+AGG + chr8_2:50617876-50617895 None:intergenic 55.0%
GGTTATCCTGGTGCACATGC+TGG - chr8_2:50617879-50617898 Msa1253230:CDS 55.0%
TGTTGACCAGCATGTGCACC+AGG + chr8_2:50617888-50617907 None:intergenic 55.0%
GCACATGCTGGTCAACATGC+TGG - chr8_2:50617891-50617910 Msa1253230:CDS 55.0%
! TCACGGCTAGTTCGGTATGG+TGG + chr8_2:50618210-50618229 None:intergenic 55.0%
ATGCGGAGACTCCAACTTGG+AGG - chr8_2:50618595-50618614 Msa1253230:intron 55.0%
TGCGGAGACTCCAACTTGGA+GGG - chr8_2:50618596-50618615 Msa1253230:intron 55.0%
TCACCAGGGTCTCATGGACA+TGG - chr8_2:50618995-50619014 Msa1253230:intron 55.0%
! CATGGACATGGCGGTATTGG+AGG - chr8_2:50619007-50619026 Msa1253230:intron 55.0%
CATGTCTCCCATGGTGCTCA+CGG - chr8_2:50619070-50619089 Msa1253230:CDS 55.0%
TTATCCAGGTGGCTACCCAC+AGG - chr8_2:50619102-50619121 Msa1253230:CDS 55.0%
TATCCAGGTGGCTACCCACA+GGG - chr8_2:50619103-50619122 Msa1253230:CDS 55.0%
TGCACATGGTGGCAGTCACA+TGG - chr8_2:50619132-50619151 Msa1253230:CDS 55.0%
GCACATGGTGGCAGTCACAT+GGG - chr8_2:50619133-50619152 Msa1253230:CDS 55.0%
TGGCAGTCACATGGGTCACA+TGG - chr8_2:50619141-50619160 Msa1253230:CDS 55.0%
GGCAGTCACATGGGTCACAT+GGG - chr8_2:50619142-50619161 Msa1253230:CDS 55.0%
CAGCATGGCAAGTTCAAGGG+AGG - chr8_2:50619181-50619200 Msa1253230:CDS 55.0%
! AACATGGTGGAGGCAAGCAC+GGG - chr8_2:50619239-50619258 Msa1253230:CDS 55.0%
GCAAGCACGGGTTCAAGAAG+TGG - chr8_2:50619251-50619270 Msa1253230:CDS 55.0%
!! GCTGCTGCACATGGTGGACA+TGG - chr8_2:50617735-50617754 Msa1253230:CDS 60.0%
!! GCTGCACATGGTGGACATGG+AGG - chr8_2:50617738-50617757 Msa1253230:CDS 60.0%
GGAGGACATGGTTACCCACC+TGG - chr8_2:50617756-50617775 Msa1253230:CDS 60.0%
! GTGGAGGGTATGCACCAGGT+GGG + chr8_2:50617773-50617792 None:intergenic 60.0%
! TGTGGAGGGTATGCACCAGG+TGG + chr8_2:50617774-50617793 None:intergenic 60.0%
!! TGTGGTGGATACCCAGCAGG+TGG + chr8_2:50617807-50617826 None:intergenic 60.0%
GGTGGGTACCCTTGTTGAGG+AGG + chr8_2:50617855-50617874 None:intergenic 60.0%
GCAGGTGGGTACCCTTGTTG+AGG + chr8_2:50617858-50617877 None:intergenic 60.0%
!! CAACAAGGGTACCCACCTGC+TGG - chr8_2:50617858-50617877 Msa1253230:CDS 60.0%
GCACCAGGATAACCAGCAGG+TGG + chr8_2:50617873-50617892 None:intergenic 60.0%
! CGGTGTCAGTGTCCAATGCC+AGG + chr8_2:50617999-50618018 None:intergenic 60.0%
TGTGCAGGAGCCCTCCAAGT+TGG + chr8_2:50618609-50618628 None:intergenic 60.0%
CTTGGAGGGCTCCTGCACAT+TGG - chr8_2:50618610-50618629 Msa1253230:intron 60.0%
CCAGGGTCTCATGGACATGG+CGG - chr8_2:50618998-50619017 Msa1253230:intron 60.0%
GGCACTCACCATGTCTCCCA+TGG - chr8_2:50619061-50619080 Msa1253230:CDS 60.0%
CGTGAGCACCATGGGAGACA+TGG + chr8_2:50619072-50619091 None:intergenic 60.0%
CATGTGCATAGCCGCCCTGT+GGG + chr8_2:50619120-50619139 None:intergenic 60.0%
CACATGGGTCACATGGGCCA+TGG - chr8_2:50619148-50619167 Msa1253230:CDS 60.0%
!! GCTGCTGCACATGGTGGACA+TGG - chr8_2:50617735-50617754 Msa1253230:CDS 60.0%
!! GCTGCACATGGTGGACATGG+AGG - chr8_2:50617738-50617757 Msa1253230:CDS 60.0%
GGAGGACATGGTTACCCACC+TGG - chr8_2:50617756-50617775 Msa1253230:CDS 60.0%
! GTGGAGGGTATGCACCAGGT+GGG + chr8_2:50617773-50617792 None:intergenic 60.0%
! TGTGGAGGGTATGCACCAGG+TGG + chr8_2:50617774-50617793 None:intergenic 60.0%
!! TGTGGTGGATACCCAGCAGG+TGG + chr8_2:50617807-50617826 None:intergenic 60.0%
GGTGGGTACCCTTGTTGAGG+AGG + chr8_2:50617855-50617874 None:intergenic 60.0%
GCAGGTGGGTACCCTTGTTG+AGG + chr8_2:50617858-50617877 None:intergenic 60.0%
!! CAACAAGGGTACCCACCTGC+TGG - chr8_2:50617858-50617877 Msa1253230:CDS 60.0%
GCACCAGGATAACCAGCAGG+TGG + chr8_2:50617873-50617892 None:intergenic 60.0%
! CGGTGTCAGTGTCCAATGCC+AGG + chr8_2:50617999-50618018 None:intergenic 60.0%
TGTGCAGGAGCCCTCCAAGT+TGG + chr8_2:50618609-50618628 None:intergenic 60.0%
CTTGGAGGGCTCCTGCACAT+TGG - chr8_2:50618610-50618629 Msa1253230:intron 60.0%
CCAGGGTCTCATGGACATGG+CGG - chr8_2:50618998-50619017 Msa1253230:intron 60.0%
GGCACTCACCATGTCTCCCA+TGG - chr8_2:50619061-50619080 Msa1253230:CDS 60.0%
CGTGAGCACCATGGGAGACA+TGG + chr8_2:50619072-50619091 None:intergenic 60.0%
CATGTGCATAGCCGCCCTGT+GGG + chr8_2:50619120-50619139 None:intergenic 60.0%
CACATGGGTCACATGGGCCA+TGG - chr8_2:50619148-50619167 Msa1253230:CDS 60.0%
!! GCTGGTGCTGCTGCACATGG+TGG - chr8_2:50617729-50617748 Msa1253230:CDS 65.0%
CCGCCATGTCCATGAGACCC+TGG + chr8_2:50619001-50619020 None:intergenic 65.0%
! GTGAGCGCCGTGAGCACCAT+GGG + chr8_2:50619080-50619099 None:intergenic 65.0%
CATGGTGCTCACGGCGCTCA+CGG - chr8_2:50619079-50619098 Msa1253230:CDS 65.0%
CACGGCGCTCACGGTTATCC+AGG - chr8_2:50619088-50619107 Msa1253230:CDS 65.0%
GGCGCTCACGGTTATCCAGG+TGG - chr8_2:50619091-50619110 Msa1253230:CDS 65.0%
CCATGTGCATAGCCGCCCTG+TGG + chr8_2:50619121-50619140 None:intergenic 65.0%
CCACAGGGCGGCTATGCACA+TGG - chr8_2:50619118-50619137 Msa1253230:CDS 65.0%
CAGGGCGGCTATGCACATGG+TGG - chr8_2:50619121-50619140 Msa1253230:CDS 65.0%
!! GCTGGTGCTGCTGCACATGG+TGG - chr8_2:50617729-50617748 Msa1253230:CDS 65.0%
CCGCCATGTCCATGAGACCC+TGG + chr8_2:50619001-50619020 None:intergenic 65.0%
! GTGAGCGCCGTGAGCACCAT+GGG + chr8_2:50619080-50619099 None:intergenic 65.0%
CATGGTGCTCACGGCGCTCA+CGG - chr8_2:50619079-50619098 Msa1253230:CDS 65.0%
CACGGCGCTCACGGTTATCC+AGG - chr8_2:50619088-50619107 Msa1253230:CDS 65.0%
GGCGCTCACGGTTATCCAGG+TGG - chr8_2:50619091-50619110 Msa1253230:CDS 65.0%
CCATGTGCATAGCCGCCCTG+TGG + chr8_2:50619121-50619140 None:intergenic 65.0%
CCACAGGGCGGCTATGCACA+TGG - chr8_2:50619118-50619137 Msa1253230:CDS 65.0%
CAGGGCGGCTATGCACATGG+TGG - chr8_2:50619121-50619140 Msa1253230:CDS 65.0%
GGGGCTGCTGCCGCTGCTTA+TGG - chr8_2:50619040-50619059 Msa1253230:CDS 70.0%
! CGTGAGCGCCGTGAGCACCA+TGG + chr8_2:50619081-50619100 None:intergenic 70.0%
CCAGGTGGCTACCCACAGGG+CGG - chr8_2:50619106-50619125 Msa1253230:CDS 70.0%
GGGGCTGCTGCCGCTGCTTA+TGG - chr8_2:50619040-50619059 Msa1253230:CDS 70.0%
! CGTGAGCGCCGTGAGCACCA+TGG + chr8_2:50619081-50619100 None:intergenic 70.0%
CCAGGTGGCTACCCACAGGG+CGG - chr8_2:50619106-50619125 Msa1253230:CDS 70.0%
CCGCCCTGTGGGTAGCCACC+TGG + chr8_2:50619109-50619128 None:intergenic 75.0%
CCGCCCTGTGGGTAGCCACC+TGG + chr8_2:50619109-50619128 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 50617268 50619677 50617268 ID=Msa1253230;Name=Msa1253230
chr8_2 mRNA 50617268 50619677 50617268 ID=Msa1253230-mRNA-1;Parent=Msa1253230;Name=Msa1253230-mRNA-1;_AED=0.00;_eAED=0.00;_QI=156|1|1|1|0.5|0.33|3|398|177
chr8_2 exon 50617268 50617943 50617268 ID=Msa1253230-mRNA-1:exon:15447;Parent=Msa1253230-mRNA-1
chr8_2 exon 50619033 50619312 50619033 ID=Msa1253230-mRNA-1:exon:15446;Parent=Msa1253230-mRNA-1
chr8_2 exon 50619546 50619677 50619546 ID=Msa1253230-mRNA-1:exon:15445;Parent=Msa1253230-mRNA-1
chr8_2 five_prime_UTR 50619546 50619677 50619546 ID=Msa1253230-mRNA-1:five_prime_utr;Parent=Msa1253230-mRNA-1
chr8_2 five_prime_UTR 50619289 50619312 50619289 ID=Msa1253230-mRNA-1:five_prime_utr;Parent=Msa1253230-mRNA-1
chr8_2 CDS 50619033 50619288 50619033 ID=Msa1253230-mRNA-1:cds;Parent=Msa1253230-mRNA-1
chr8_2 CDS 50617666 50617943 50617666 ID=Msa1253230-mRNA-1:cds;Parent=Msa1253230-mRNA-1
chr8_2 three_prime_UTR 50617268 50617665 50617268 ID=Msa1253230-mRNA-1:three_prime_utr;Parent=Msa1253230-mRNA-1
Gene Sequence

>Msa1253230

ATGGGTGGTGGTAAGGACAAACATGATGAATCTTCTGACAAAGGGGTGTTTTCAAATCTTGCTCAAGGTATAGCTGGTGCTGCTGCACATGGTGGACATGGAGGACATGGTTACCCACCTGGTGCATACCCTCCACAACAAGGTTATCCACCTGCTGGGTATCCACCACAACAAGGTTATCCTCCTAGTGGATACCCTCCTCAACAAGGGTACCCACCTGCTGGTTATCCTGGTGCACATGCTGGTCAACATGCTGGGTCTCATGGACATGGCGGTATTGGAGGAATGCTTGCTGGGGCTGCTGCCGCTGCTTATGGCACTCACCATGTCTCCCATGGTGCTCACGGCGCTCACGGTTATCCAGGTGGCTACCCACAGGGCGGCTATGCACATGGTGGCAGTCACATGGGTCACATGGGCCATGGAAAATTCAAGCAGCATGGCAAGTTCAAGGGAGGCAAGCACGGCAAGTTCAAGCATGGAAAGTTTGGCAAACATGGTGGAGGCAAGCACGGGTTCAAGAAGTGGAAGTAA
Protein sequence

>Msa1253230

MGGGKDKHDESSDKGVFSNLAQGIAGAAAHGGHGGHGYPPGAYPPQQGYPPAGYPPQQGYPPSGYPPQQGYPPAGYPGAHAGQHAGSHGHGGIGGMLAGAAAAAYGTHHVSHGAHGAHGYPGGYPQGGYAHGGSHMGHMGHGKFKQHGKFKGGKHGKFKHGKFGKHGGGKHGFKKWK*