Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1253470 | AES82241.1 | 69.291 | 381 | 117 | 0 | 102 | 482 | 144 | 524 | 0.0 | 553 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1253470 | G7KTR1 | 69.291 | 381 | 117 | 0 | 102 | 482 | 144 | 524 | 0.0 | 553 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1116100 | Msa1253470 | 0.835793 | 1.364165e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1253470 | MtrunA17_Chr8g0365271 | 92.105 | 190 | 15 | 0 | 295 | 484 | 5 | 194 | 2.00e-125 | 363 |
| Msa1253470 | MtrunA17_Chr4g0014311 | 64.311 | 283 | 85 | 1 | 216 | 482 | 2 | 284 | 2.96e-123 | 361 |
| Msa1253470 | MtrunA17_Chr5g0444831 | 91.758 | 182 | 15 | 0 | 303 | 484 | 1 | 182 | 1.01e-117 | 343 |
| Msa1253470 | MtrunA17_Chr3g0096071 | 58.376 | 197 | 79 | 1 | 99 | 295 | 30 | 223 | 1.54e-79 | 247 |
| Msa1253470 | MtrunA17_Chr1g0206481 | 53.691 | 149 | 69 | 0 | 102 | 250 | 144 | 292 | 5.25e-52 | 177 |
| Msa1253470 | MtrunA17_Chr7g0270411 | 54.264 | 129 | 59 | 0 | 354 | 482 | 1 | 129 | 1.16e-39 | 139 |
| Msa1253470 | MtrunA17_Chr1g0158831 | 42.657 | 143 | 82 | 0 | 101 | 243 | 6 | 148 | 5.50e-35 | 129 |
| Msa1253470 | MtrunA17_Chr3g0112231 | 41.667 | 156 | 82 | 2 | 145 | 300 | 1 | 147 | 3.26e-33 | 125 |
| Msa1253470 | MtrunA17_Chr2g0278111 | 42.657 | 143 | 82 | 0 | 101 | 243 | 143 | 285 | 4.09e-33 | 127 |
| Msa1253470 | MtrunA17_Chr5g0411141 | 42.657 | 143 | 82 | 0 | 101 | 243 | 144 | 286 | 4.57e-33 | 127 |
| Msa1253470 | MtrunA17_Chr3g0138341 | 67.816 | 87 | 23 | 1 | 295 | 381 | 20 | 101 | 1.10e-32 | 121 |
| Msa1253470 | MtrunA17_Chr2g0280031 | 46.392 | 97 | 52 | 0 | 101 | 197 | 133 | 229 | 9.33e-24 | 100 |
| Msa1253470 | MtrunA17_Chr1g0212881 | 45.918 | 98 | 49 | 1 | 303 | 400 | 1 | 94 | 7.02e-23 | 93.6 |
| Msa1253470 | MtrunA17_Chr5g0423441 | 43.000 | 100 | 57 | 0 | 101 | 200 | 143 | 242 | 5.30e-22 | 95.1 |
| Msa1253470 | MtrunA17_Chr2g0300061 | 58.065 | 62 | 26 | 0 | 334 | 395 | 7 | 68 | 4.66e-20 | 84.7 |
| Msa1253470 | MtrunA17_Chr1g0167871 | 24.000 | 250 | 183 | 4 | 117 | 359 | 357 | 606 | 1.47e-18 | 89.0 |
| Msa1253470 | MtrunA17_Chr2g0279021 | 23.774 | 265 | 195 | 6 | 130 | 390 | 13 | 274 | 7.92e-16 | 79.3 |
| Msa1253470 | MtrunA17_Chr4g0019691 | 28.667 | 150 | 104 | 3 | 248 | 396 | 22 | 169 | 5.77e-13 | 67.4 |
| Msa1253470 | MtrunA17_Chr1g0168201 | 30.827 | 133 | 79 | 3 | 277 | 407 | 11 | 132 | 1.63e-11 | 62.4 |
| Msa1253470 | MtrunA17_Chr6g0471721 | 29.936 | 157 | 86 | 3 | 293 | 439 | 12 | 154 | 3.58e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1253470 | AT2G05642.1 | 23.125 | 320 | 211 | 7 | 101 | 389 | 106 | 421 | 7.29e-21 | 95.9 |
| Msa1253470 | AT1G52950.1 | 26.154 | 260 | 176 | 7 | 112 | 358 | 153 | 409 | 1.73e-19 | 92.0 |
Find 154 sgRNAs with CRISPR-Local
Find 284 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTAGACTATTTCCCATTT+TGG | 0.103352 | 8_2:+50924137 | Msa1253470:three_prime_UTR |
| CTTAAGGACCTGCATATTTA+TGG | 0.117816 | 8_2:+50921149 | Msa1253470:intron |
| AACCAACATCCCCAGTTCTT+TGG | 0.228384 | 8_2:-50923437 | None:intergenic |
| CACCAGATTATTCCCAGTTT+TGG | 0.254151 | 8_2:-50923874 | None:intergenic |
| TCAAGCATCTGGAACCTTAA+TGG | 0.259449 | 8_2:+50922752 | Msa1253470:CDS |
| TGAGATCACTGATTGGAATT+TGG | 0.259990 | 8_2:+50923483 | Msa1253470:CDS |
| ACCAACATCCCCAGTTCTTT+GGG | 0.274957 | 8_2:-50923436 | None:intergenic |
| GTACACAATTGGCGAAATTA+TGG | 0.275216 | 8_2:+50923505 | Msa1253470:CDS |
| GATCAGCTTGGTACCGTAAA+AGG | 0.279306 | 8_2:-50922559 | None:intergenic |
| AACTCCACTGGAGTTGAAAA+AGG | 0.292499 | 8_2:-50920547 | None:intergenic |
| ACCAGATTCTGTGTTGGTTC+TGG | 0.297902 | 8_2:+50924092 | Msa1253470:three_prime_UTR |
| TTTGGTGATTCAACCAAAAC+TGG | 0.300487 | 8_2:+50923861 | Msa1253470:CDS |
| TCCCATTTCAATTTCATTGC+TGG | 0.307181 | 8_2:+50920449 | Msa1253470:five_prime_UTR |
| TATCATGTGTTTAAGCTAAT+AGG | 0.309216 | 8_2:-50924379 | None:intergenic |
| ATCACCACGACAGGAGAGTT+TGG | 0.314257 | 8_2:-50922483 | None:intergenic |
| ATTGATGTTTCAACTGTTTG+AGG | 0.316807 | 8_2:+50924292 | Msa1253470:three_prime_UTR |
| TTGCGACGTTACAGTCAAAA+AGG | 0.319906 | 8_2:-50923254 | None:intergenic |
| TATTGAGAAACATAACATTA+AGG | 0.333229 | 8_2:+50923570 | Msa1253470:CDS |
| CCAAGGCAACCTTATGTTCC+CGG | 0.340138 | 8_2:+50920379 | Msa1253470:five_prime_UTR |
| GAGAGAGAAAGAGGAAGATA+TGG | 0.341986 | 8_2:-50920421 | None:intergenic |
| CAAACACCTGGTAGCAAATC+TGG | 0.343843 | 8_2:+50923906 | Msa1253470:CDS |
| GATATATGTTCAGATGTAAT+TGG | 0.344910 | 8_2:+50922192 | Msa1253470:intron |
| CACAGATAAAGGTAATTGTT+GGG | 0.350039 | 8_2:+50921707 | Msa1253470:intron |
| AAGCTGCGCCTTATTGAGTT+TGG | 0.352703 | 8_2:+50923843 | Msa1253470:intron |
| TTGAATCACCAAACTCAATA+AGG | 0.359600 | 8_2:-50923851 | None:intergenic |
| TCTTGGTTACCCCAAAGAAC+TGG | 0.359966 | 8_2:+50923426 | Msa1253470:CDS |
| GTCAGATAAAGGAACCATTA+AGG | 0.376003 | 8_2:-50922766 | None:intergenic |
| ATCCAGCAATGAAATTGAAA+TGG | 0.379576 | 8_2:-50920451 | None:intergenic |
| GGGGTAACCAAGAGAATTGC+TGG | 0.380597 | 8_2:-50923416 | None:intergenic |
| GGTTGAGAAACTGAACTAAT+GGG | 0.382402 | 8_2:+50924028 | Msa1253470:exon |
| ATTGGAATTTGGTACACAAT+TGG | 0.388203 | 8_2:+50923494 | Msa1253470:CDS |
| TGGGAAGGGTGTGGTTGAGC+CGG | 0.395546 | 8_2:-50921207 | None:intergenic |
| TTCTATTTGTGGTATTGAAC+CGG | 0.398210 | 8_2:+50922959 | Msa1253470:CDS |
| TGAAGTTGATCGTCAGATAA+AGG | 0.401192 | 8_2:-50922777 | None:intergenic |
| GAGGATCCATTGTTCTTTGT+GGG | 0.405119 | 8_2:+50922416 | Msa1253470:CDS |
| GCCAGAATCAAAATTATTGC+TGG | 0.405520 | 8_2:+50923020 | Msa1253470:CDS |
| AGGTTGAGAAACTGAACTAA+TGG | 0.409819 | 8_2:+50924027 | Msa1253470:CDS |
| TCACAGATAAAGGTAATTGT+TGG | 0.410971 | 8_2:+50921706 | Msa1253470:intron |
| TCCAGAACCAACACAGAATC+TGG | 0.412806 | 8_2:-50924093 | None:intergenic |
| GGGAAGGGTGTGGTTGAGCC+GGG | 0.412847 | 8_2:-50921206 | None:intergenic |
| TTTCTGTGGTGGTTCAGATC+TGG | 0.415258 | 8_2:-50920489 | None:intergenic |
| CTTTGCCACTAAACCTTCAC+AGG | 0.424319 | 8_2:-50921800 | None:intergenic |
| CTTGGAAAATACATGCTTGA+AGG | 0.426484 | 8_2:-50920361 | None:intergenic |
| TTCCCTCCAGATTTGCTACC+AGG | 0.429964 | 8_2:-50923912 | None:intergenic |
| CCTGCCCCTGAGCATCAATT+AGG | 0.430459 | 8_2:-50923302 | None:intergenic |
| CAAACAGTTGAAACATCAAT+AGG | 0.433207 | 8_2:-50924289 | None:intergenic |
| TGATCTTTCTCCAATCTCTT+CGG | 0.436787 | 8_2:-50923973 | None:intergenic |
| AGGTGATGGTGGGAAGGGTG+TGG | 0.439579 | 8_2:-50921216 | None:intergenic |
| ACAGTTGACAGAAAGATAAA+CGG | 0.441689 | 8_2:-50924206 | None:intergenic |
| AACCAAAACTGGGAATAATC+TGG | 0.442247 | 8_2:+50923872 | Msa1253470:CDS |
| TCAAGACCTAATTGATGCTC+AGG | 0.443181 | 8_2:+50923296 | Msa1253470:CDS |
| GAGAGAGGTCCGGGAACATA+AGG | 0.445732 | 8_2:-50920388 | None:intergenic |
| ACAGATTGGTGAAACGCAAT+TGG | 0.448182 | 8_2:+50923723 | Msa1253470:CDS |
| GGGAGTGTAGAGAGAGAAAG+AGG | 0.461524 | 8_2:-50920430 | None:intergenic |
| TGGTGGTTCAGATCTGGTTA+TGG | 0.463186 | 8_2:-50920483 | None:intergenic |
| ATACTTGGCACCGAAGAGAT+TGG | 0.467029 | 8_2:+50923963 | Msa1253470:CDS |
| TCACCACGACAGGAGAGTTT+GGG | 0.473991 | 8_2:-50922482 | None:intergenic |
| AGAGGATCCATTGTTCTTTG+TGG | 0.474308 | 8_2:+50922415 | Msa1253470:CDS |
| GACCTGCATATTTATGGCTC+TGG | 0.474500 | 8_2:+50921155 | Msa1253470:CDS |
| CAAGGTCTTAGTCAAGCATC+TGG | 0.477469 | 8_2:+50922741 | Msa1253470:CDS |
| TTTGATTCTGGCCGCACACT+TGG | 0.483075 | 8_2:-50923009 | None:intergenic |
| GTATTGAACCGGAGTACAAT+TGG | 0.484064 | 8_2:+50922970 | Msa1253470:CDS |
| ATCATTACATTAACTTTCTG+TGG | 0.485764 | 8_2:-50920503 | None:intergenic |
| CTTGGTTACCCCAAAGAACT+GGG | 0.486024 | 8_2:+50923427 | Msa1253470:CDS |
| CAGTTGACAGAAAGATAAAC+GGG | 0.488086 | 8_2:-50924205 | None:intergenic |
| CTGTAACGTCGCAAATTATG+TGG | 0.488599 | 8_2:+50923263 | Msa1253470:CDS |
| CACCAGAGCCATAAATATGC+AGG | 0.489635 | 8_2:-50921157 | None:intergenic |
| CATTACATATGTAAAACACT+TGG | 0.490748 | 8_2:-50924331 | None:intergenic |
| TCCAGCAATGAAATTGAAAT+GGG | 0.492336 | 8_2:-50920450 | None:intergenic |
| TTAAAGTTGAGATCACTGAT+TGG | 0.499548 | 8_2:+50923476 | Msa1253470:CDS |
| CAGATTCAAGTTGCATGTCC+AGG | 0.501401 | 8_2:+50923200 | Msa1253470:intron |
| GTTTCACCAATCTGTGTTAG+CGG | 0.501631 | 8_2:-50923715 | None:intergenic |
| AAATTGAGAGAGAGAGGTCC+GGG | 0.502719 | 8_2:-50920397 | None:intergenic |
| ACGACTGTTACAGGGGTAAG+AGG | 0.503000 | 8_2:+50922397 | Msa1253470:intron |
| ATGATGCTGATCTGATCAAA+AGG | 0.508055 | 8_2:+50923545 | Msa1253470:CDS |
| CCGGGAACATAAGGTTGCCT+TGG | 0.509294 | 8_2:-50920379 | None:intergenic |
| CCTAATTGATGCTCAGGGGC+AGG | 0.511420 | 8_2:+50923302 | Msa1253470:CDS |
| AATGTTCCGCTAACACAGAT+TGG | 0.513539 | 8_2:+50923709 | Msa1253470:CDS |
| CACGACTCGTTGCCATGGAT+CGG | 0.515182 | 8_2:-50920581 | None:intergenic |
| TTTCAATTTCATTGCTGGAT+CGG | 0.516672 | 8_2:+50920454 | Msa1253470:five_prime_UTR |
| ACAAAAGGCTGTAGGGCCTA+AGG | 0.518305 | 8_2:-50924176 | None:intergenic |
| AACTCCAGTGGAGTTGAACT+CGG | 0.520821 | 8_2:+50920555 | Msa1253470:five_prime_UTR |
| AAAATACATGCTTGAAGGGA+AGG | 0.524817 | 8_2:-50920356 | None:intergenic |
| GCAGAGGATTCTGCTATACT+TGG | 0.527026 | 8_2:+50923948 | Msa1253470:CDS |
| GATTGGTGGTGCTGCAATTG+AGG | 0.527153 | 8_2:+50922713 | Msa1253470:CDS |
| TAAATTGAGAGAGAGAGGTC+CGG | 0.527750 | 8_2:-50920398 | None:intergenic |
| CCCCAAAGAACTGGGGATGT+TGG | 0.529735 | 8_2:+50923435 | Msa1253470:CDS |
| AGAGCAGGAATGTTGTTCCT+AGG | 0.531133 | 8_2:+50923069 | Msa1253470:CDS |
| CTACAGGCCAGCAATTCTCT+TGG | 0.532160 | 8_2:+50923409 | Msa1253470:intron |
| GCCGCCGAGTTCAACTCCAC+TGG | 0.541748 | 8_2:-50920559 | None:intergenic |
| TGAACTCGGCGGCCGATCCA+TGG | 0.542991 | 8_2:+50920569 | Msa1253470:exon |
| GTGCTAGATGCAATCAGAGC+AGG | 0.545742 | 8_2:+50923054 | Msa1253470:CDS |
| CGTAGAGGTGATGGTGGGAA+GGG | 0.547460 | 8_2:-50921221 | None:intergenic |
| ATAAACGGGAAACAAACAAA+AGG | 0.547778 | 8_2:-50924191 | None:intergenic |
| CTACGATACTCCTTAGCAGC+CGG | 0.548477 | 8_2:-50922597 | None:intergenic |
| AAATGTAAAATCACCACGAC+AGG | 0.555493 | 8_2:-50922492 | None:intergenic |
| TCCATGGCAACGAGTCGTGA+TGG | 0.556662 | 8_2:+50920585 | Msa1253470:exon |
| ACCATCACGACTCGTTGCCA+TGG | 0.556891 | 8_2:-50920586 | None:intergenic |
| GTCCAGGTGATGGACAATAC+AGG | 0.558482 | 8_2:+50923216 | Msa1253470:CDS |
| TTGGAAAATACATGCTTGAA+GGG | 0.559428 | 8_2:-50920360 | None:intergenic |
| GCTGCAATTGAGGTGGCTCA+AGG | 0.559918 | 8_2:+50922723 | Msa1253470:CDS |
| ATCCTGTATTGTCCATCACC+TGG | 0.560069 | 8_2:-50923218 | None:intergenic |
| GGATCAATATGCTATTAGAA+TGG | 0.562263 | 8_2:+50922437 | Msa1253470:CDS |
| GAAACAAACAAAAGGCTGTA+GGG | 0.563171 | 8_2:-50924183 | None:intergenic |
| CAAGCTCATTGACATAACAT+TGG | 0.563976 | 8_2:+50922268 | Msa1253470:CDS |
| GTAGCAAATCTGGAGGGAAG+AGG | 0.567429 | 8_2:+50923916 | Msa1253470:CDS |
| ACAGATAAAGGTAATTGTTG+GGG | 0.569047 | 8_2:+50921708 | Msa1253470:intron |
| GGAAACAAACAAAAGGCTGT+AGG | 0.569178 | 8_2:-50924184 | None:intergenic |
| ACGTAGAGGTGATGGTGGGA+AGG | 0.569541 | 8_2:-50921222 | None:intergenic |
| GATTGGTGAAACGCAATTGG+AGG | 0.570137 | 8_2:+50923726 | Msa1253470:CDS |
| ATTACATTAACTTTCTGTGG+TGG | 0.570722 | 8_2:-50920500 | None:intergenic |
| TGTTCTCAGCAACTTCCACC+CGG | 0.571267 | 8_2:+50921188 | Msa1253470:CDS |
| TATGGTAAATTGAGAGAGAG+AGG | 0.571456 | 8_2:-50920403 | None:intergenic |
| TCTGATACCAGATTCTGTGT+TGG | 0.572663 | 8_2:+50924086 | Msa1253470:three_prime_UTR |
| ATTGTCATTAACAGGATTGG+TGG | 0.577079 | 8_2:+50922699 | Msa1253470:intron |
| CAAGTTGCATGTCCAGGTGA+TGG | 0.577260 | 8_2:+50923206 | Msa1253470:CDS |
| GCTCATTGACATAACATTGG+AGG | 0.580482 | 8_2:+50922271 | Msa1253470:CDS |
| AAGGGTGTGGTTGAGCCGGG+TGG | 0.580728 | 8_2:-50921203 | None:intergenic |
| CAAGACCTAATTGATGCTCA+GGG | 0.583471 | 8_2:+50923297 | Msa1253470:CDS |
| GTTATCGTCGCGACTCGTTG+AGG | 0.585583 | 8_2:-50920622 | None:intergenic |
| CAGATGTAATTGGTATGTTG+TGG | 0.586768 | 8_2:+50922202 | Msa1253470:intron |
| ATTATCATCTAAGATCAGCT+TGG | 0.587306 | 8_2:-50922571 | None:intergenic |
| GAAGAGGTCTGCTGATGCAG+AGG | 0.587801 | 8_2:+50923932 | Msa1253470:CDS |
| AAAGAACTGGGGATGTTGGT+TGG | 0.589396 | 8_2:+50923439 | Msa1253470:CDS |
| GAATCAAAATTATTGCTGGA+AGG | 0.597398 | 8_2:+50923024 | Msa1253470:CDS |
| GTGGATAACGAGCAAACACC+TGG | 0.605293 | 8_2:+50923894 | Msa1253470:CDS |
| CAAAACTGGGAATAATCTGG+TGG | 0.606068 | 8_2:+50923875 | Msa1253470:CDS |
| ACAGTTGAAACATCAATAGG+AGG | 0.607421 | 8_2:-50924286 | None:intergenic |
| ATTGATCCCACAAAGAACAA+TGG | 0.608210 | 8_2:-50922422 | None:intergenic |
| TTGACACATATCATCTTCTG+CGG | 0.610725 | 8_2:-50924005 | None:intergenic |
| TTGGTGATTCAACCAAAACT+GGG | 0.614113 | 8_2:+50923862 | Msa1253470:CDS |
| ACGTCGCAAATTATGTGGGA+AGG | 0.615504 | 8_2:+50923268 | Msa1253470:CDS |
| TGAGAAACATAACATTAAGG+TGG | 0.615815 | 8_2:+50923573 | Msa1253470:CDS |
| TTGCAACGTAGAGGTGATGG+TGG | 0.620543 | 8_2:-50921227 | None:intergenic |
| GGCGAAATTATGGTGTCAAG+AGG | 0.621997 | 8_2:+50923515 | Msa1253470:CDS |
| TGCAACGTAGAGGTGATGGT+GGG | 0.625208 | 8_2:-50921226 | None:intergenic |
| CCAACATCCCCAGTTCTTTG+GGG | 0.626972 | 8_2:-50923435 | None:intergenic |
| TCATAATACCAATTGTACTC+CGG | 0.628038 | 8_2:-50922978 | None:intergenic |
| TGGTGGTGCTGCAATTGAGG+TGG | 0.629647 | 8_2:+50922716 | Msa1253470:CDS |
| AGAATTGATTGAGTCGTCTG+AGG | 0.634133 | 8_2:+50922821 | Msa1253470:CDS |
| GCAGAAGATGATATGTGTCA+AGG | 0.642119 | 8_2:+50924007 | Msa1253470:CDS |
| TGTAACGTCGCAAATTATGT+GGG | 0.648502 | 8_2:+50923264 | Msa1253470:CDS |
| ACACCTGGTAGCAAATCTGG+AGG | 0.653753 | 8_2:+50923909 | Msa1253470:CDS |
| AGTCGTGATGGTAACAGCGA+GGG | 0.659991 | 8_2:+50920597 | Msa1253470:CDS |
| TCGCGACGATAACAACGAGA+AGG | 0.667643 | 8_2:+50920632 | Msa1253470:CDS |
| CACCTGGTAGCAAATCTGGA+GGG | 0.674588 | 8_2:+50923910 | Msa1253470:CDS |
| CAAAATTGAATGTATGCCGA+CGG | 0.675339 | 8_2:+50921247 | Msa1253470:CDS |
| GAGAAACTGAACTAATGGGG+AGG | 0.680376 | 8_2:+50924032 | Msa1253470:exon |
| GTTGAGAAACTGAACTAATG+GGG | 0.690251 | 8_2:+50924029 | Msa1253470:exon |
| TTGGTTACCCCAAAGAACTG+GGG | 0.705179 | 8_2:+50923428 | Msa1253470:CDS |
| GAGTCGTGATGGTAACAGCG+AGG | 0.724601 | 8_2:+50920596 | Msa1253470:CDS |
| TGATGCATGTACCAAGTGTG+CGG | 0.729636 | 8_2:+50922998 | Msa1253470:CDS |
| TCCAGTGGAGTTGAACTCGG+CGG | 0.731822 | 8_2:+50920558 | Msa1253470:five_prime_UTR |
| AAGACCTAATTGATGCTCAG+GGG | 0.736491 | 8_2:+50923298 | Msa1253470:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTGTTTATTAGATAAAATA+TGG | + | chr8_2:50921078-50921097 | Msa1253470:intron | 10.0% |
| !!! | TTTATTTTATGTTCTAATTA+GGG | - | chr8_2:50922867-50922886 | None:intergenic | 10.0% |
| !!! | ATTTATTTTATGTTCTAATT+AGG | - | chr8_2:50922868-50922887 | None:intergenic | 10.0% |
| !! | GTTAATATTTAATTCGAATT+GGG | + | chr8_2:50920735-50920754 | Msa1253470:intron | 15.0% |
| !!! | TATCAAATTTTATTGCTTTA+TGG | + | chr8_2:50921425-50921444 | Msa1253470:intron | 15.0% |
| !!! | AATTGCACATATATTAATTT+TGG | - | chr8_2:50922134-50922153 | None:intergenic | 15.0% |
| !!! | TTTTTAAATATTTTGAACCA+TGG | + | chr8_2:50923780-50923799 | Msa1253470:intron | 15.0% |
| !!! | TTTTAAATATTTTGAACCAT+GGG | + | chr8_2:50923781-50923800 | Msa1253470:intron | 15.0% |
| !! | TTTCCTTCAAAAAAAAAAAT+AGG | - | chr8_2:50924260-50924279 | None:intergenic | 15.0% |
| !! | ATAAAGCAAATAAGAAATTG+AGG | - | chr8_2:50920675-50920694 | None:intergenic | 20.0% |
| !! | TTCGAATTAAATATTAACGA+TGG | - | chr8_2:50920733-50920752 | None:intergenic | 20.0% |
| !! | CGTTAATATTTAATTCGAAT+TGG | + | chr8_2:50920734-50920753 | Msa1253470:intron | 20.0% |
| !!! | AATCTGAGAATCAATTTTAT+GGG | - | chr8_2:50920914-50920933 | None:intergenic | 20.0% |
| !!! | AAATCTGAGAATCAATTTTA+TGG | - | chr8_2:50920915-50920934 | None:intergenic | 20.0% |
| !! | GTTTATTAGATAAAATATGG+AGG | + | chr8_2:50921081-50921100 | Msa1253470:intron | 20.0% |
| !!! | ACTCAAATCAATGATTTTTT+TGG | - | chr8_2:50921587-50921606 | None:intergenic | 20.0% |
| !!! | GATTTTTATTTCACAGATAA+AGG | + | chr8_2:50921696-50921715 | Msa1253470:intron | 20.0% |
| !!! | TTTTGTTTGTTTGTCAATTT+AGG | + | chr8_2:50921731-50921750 | Msa1253470:CDS | 20.0% |
| !! | AGCAATTAAAATGTAAAGAT+TGG | + | chr8_2:50921830-50921849 | Msa1253470:intron | 20.0% |
| !! | AAAGCAAATATCAAATATAG+AGG | - | chr8_2:50922370-50922389 | None:intergenic | 20.0% |
| !! | TATTTGATATTTGCTTTATG+TGG | + | chr8_2:50922373-50922392 | Msa1253470:intron | 20.0% |
| !! | ACAATCATTAAGTTCTATAA+AGG | - | chr8_2:50922676-50922695 | None:intergenic | 20.0% |
| !! | TATTGAGAAACATAACATTA+AGG | + | chr8_2:50923570-50923589 | Msa1253470:CDS | 20.0% |
| !!! | TTAAGGTGGTAATTTTTTAT+AGG | + | chr8_2:50923587-50923606 | Msa1253470:intron | 20.0% |
| !! | AAAAAACATTACACCAAAAT+GGG | - | chr8_2:50924153-50924172 | None:intergenic | 20.0% |
| ! | ATCATTACATTAACTTTCTG+TGG | - | chr8_2:50920506-50920525 | None:intergenic | 25.0% |
| !!! | CAAAACATTGTTTTTTTGAG+AGG | + | chr8_2:50921027-50921046 | Msa1253470:intron | 25.0% |
| ! | AGGAAATTTCAAAACATTGT+TGG | + | chr8_2:50921047-50921066 | Msa1253470:intron | 25.0% |
| ! | AAATTTCAAAACATTGTTGG+AGG | + | chr8_2:50921050-50921069 | Msa1253470:intron | 25.0% |
| !!! | ATTTGGCTGTTTGATTTTTT+CGG | + | chr8_2:50921106-50921125 | Msa1253470:intron | 25.0% |
| !! | GTTTTCATTAAGGTAAGAAT+TGG | - | chr8_2:50921515-50921534 | None:intergenic | 25.0% |
| !! | AATTTAGGAATTTTCGTACT+GGG | + | chr8_2:50921746-50921765 | Msa1253470:CDS | 25.0% |
| ! | TCAAAAACTTCAAGTAGAAA+AGG | - | chr8_2:50922043-50922062 | None:intergenic | 25.0% |
| !! | TACCATTATAAATGATAACG+TGG | + | chr8_2:50922064-50922083 | Msa1253470:intron | 25.0% |
| ! | TTCCACGTTATCATTTATAA+TGG | - | chr8_2:50922069-50922088 | None:intergenic | 25.0% |
| !! | ATTATAAATGATAACGTGGA+AGG | + | chr8_2:50922068-50922087 | Msa1253470:intron | 25.0% |
| ! | GATATATGTTCAGATGTAAT+TGG | + | chr8_2:50922192-50922211 | Msa1253470:intron | 25.0% |
| !! | ATTCACCTCTTTTTCTTTTA+AGG | - | chr8_2:50922237-50922256 | None:intergenic | 25.0% |
| ! | TTAAAAGAAAAAGAGGTGAA+TGG | + | chr8_2:50922236-50922255 | Msa1253470:CDS | 25.0% |
| !! | TTGTTGTATGTATTCCTTTT+AGG | + | chr8_2:50922343-50922362 | Msa1253470:intron | 25.0% |
| ! | GGAAAACTCAAAAAATACTA+TGG | + | chr8_2:50922516-50922535 | Msa1253470:CDS | 25.0% |
| !!! | AAAAAATACTATGGTGCTAT+GGG | + | chr8_2:50922525-50922544 | Msa1253470:CDS | 25.0% |
| !! | GATCTTAGATGATAATTTTC+CGG | + | chr8_2:50922578-50922597 | Msa1253470:CDS | 25.0% |
| ! | GCAAGTAATAATAACATATC+TGG | + | chr8_2:50922619-50922638 | Msa1253470:intron | 25.0% |
| ! | TGTTGATATAAGCTATAAAC+TGG | - | chr8_2:50922653-50922672 | None:intergenic | 25.0% |
| ! | GAACATAAAATAAATCACAC+TGG | + | chr8_2:50922873-50922892 | Msa1253470:intron | 25.0% |
| !! | ATAGTTTTTGCTTCTATTTG+TGG | + | chr8_2:50922948-50922967 | Msa1253470:CDS | 25.0% |
| ! | CCAAGCAATCAAAATATATA+CGG | - | chr8_2:50923136-50923155 | None:intergenic | 25.0% |
| !!! | CGTATATATTTTGATTGCTT+GGG | + | chr8_2:50923134-50923153 | Msa1253470:intron | 25.0% |
| !! | TATTAGTTTAATGTTTCCCA+TGG | - | chr8_2:50923800-50923819 | None:intergenic | 25.0% |
| ! | CAAAAAACATTACACCAAAA+TGG | - | chr8_2:50924154-50924173 | None:intergenic | 25.0% |
| !!! | TGTAATGTTTTTTGAACCTT+AGG | + | chr8_2:50924160-50924179 | Msa1253470:three_prime_UTR | 25.0% |
| ! | CCTTCAAAAAAAAAAATAGG+AGG | - | chr8_2:50924257-50924276 | None:intergenic | 25.0% |
| !!! | CCTCCTATTTTTTTTTTTGA+AGG | + | chr8_2:50924254-50924273 | Msa1253470:three_prime_UTR | 25.0% |
| ! | CATTACATATGTAAAACACT+TGG | - | chr8_2:50924334-50924353 | None:intergenic | 25.0% |
| TTGGAAAATACATGCTTGAA+GGG | - | chr8_2:50920363-50920382 | None:intergenic | 30.0% | |
| TCCAGCAATGAAATTGAAAT+GGG | - | chr8_2:50920453-50920472 | None:intergenic | 30.0% | |
| ATCCAGCAATGAAATTGAAA+TGG | - | chr8_2:50920454-50920473 | None:intergenic | 30.0% | |
| TTTCAATTTCATTGCTGGAT+CGG | + | chr8_2:50920454-50920473 | Msa1253470:five_prime_UTR | 30.0% | |
| ATTACATTAACTTTCTGTGG+TGG | - | chr8_2:50920503-50920522 | None:intergenic | 30.0% | |
| !!! | CGATGGAATTTTTAGTGAAA+TGG | - | chr8_2:50920716-50920735 | None:intergenic | 30.0% |
| ! | GATGATAGCATTGAAGATTT+CGG | + | chr8_2:50920760-50920779 | Msa1253470:intron | 30.0% |
| TCATTCAATCATTTGCAACA+TGG | - | chr8_2:50920829-50920848 | None:intergenic | 30.0% | |
| GAGATAAAAAAAAACCTCAC+TGG | - | chr8_2:50920870-50920889 | None:intergenic | 30.0% | |
| GATAAAATATGGAGGACATT+TGG | + | chr8_2:50921089-50921108 | Msa1253470:intron | 30.0% | |
| TGTTTGTCTTCATCTTCTTA+AGG | + | chr8_2:50921133-50921152 | Msa1253470:intron | 30.0% | |
| ! | TTGAGATAGGTATTGTTAGA+TGG | + | chr8_2:50921320-50921339 | Msa1253470:intron | 30.0% |
| ! | TGAGATAGGTATTGTTAGAT+GGG | + | chr8_2:50921321-50921340 | Msa1253470:intron | 30.0% |
| ATTCTCATAATCACTTTCAC+TGG | - | chr8_2:50921463-50921482 | None:intergenic | 30.0% | |
| ! | AAAACTGCAGGTTTTCATTA+AGG | - | chr8_2:50921525-50921544 | None:intergenic | 30.0% |
| CATCATCAGGTTTATTTCAA+TGG | + | chr8_2:50921611-50921630 | Msa1253470:intron | 30.0% | |
| TTTATTTCAATGGTGGTTGT+AGG | + | chr8_2:50921621-50921640 | Msa1253470:intron | 30.0% | |
| TCACAGATAAAGGTAATTGT+TGG | + | chr8_2:50921706-50921725 | Msa1253470:intron | 30.0% | |
| CACAGATAAAGGTAATTGTT+GGG | + | chr8_2:50921707-50921726 | Msa1253470:intron | 30.0% | |
| ACAGATAAAGGTAATTGTTG+GGG | + | chr8_2:50921708-50921727 | Msa1253470:intron | 30.0% | |
| ! | CAATTTAGGAATTTTCGTAC+TGG | + | chr8_2:50921745-50921764 | Msa1253470:CDS | 30.0% |
| !! | ATTTTTCGTTTTTCCTGTGA+AGG | + | chr8_2:50921787-50921806 | Msa1253470:CDS | 30.0% |
| ! | GTTTCTGTTTTCATCCTTTT+TGG | + | chr8_2:50921908-50921927 | Msa1253470:intron | 30.0% |
| !!! | TTTTCATCCTTTTTGGTTGA+AGG | + | chr8_2:50921915-50921934 | Msa1253470:intron | 30.0% |
| TATTGTACCTTCAACCAAAA+AGG | - | chr8_2:50921925-50921944 | None:intergenic | 30.0% | |
| ATCACCTATAAATCTACTCT+TGG | + | chr8_2:50922095-50922114 | Msa1253470:intron | 30.0% | |
| GTTACCAAGAGTAGATTTAT+AGG | - | chr8_2:50922102-50922121 | None:intergenic | 30.0% | |
| AGATGCCTTAAAAGAAAAAG+AGG | + | chr8_2:50922229-50922248 | Msa1253470:CDS | 30.0% | |
| TCAAATATAGAGGACCTAAA+AGG | - | chr8_2:50922360-50922379 | None:intergenic | 30.0% | |
| GGATCAATATGCTATTAGAA+TGG | + | chr8_2:50922437-50922456 | Msa1253470:CDS | 30.0% | |
| ! | CAAAAAATACTATGGTGCTA+TGG | + | chr8_2:50922524-50922543 | Msa1253470:CDS | 30.0% |
| ! | ATTATCATCTAAGATCAGCT+TGG | - | chr8_2:50922574-50922593 | None:intergenic | 30.0% |
| ATTGTCTGATTGTCATTAAC+AGG | + | chr8_2:50922691-50922710 | Msa1253470:intron | 30.0% | |
| AATAAATCACACTGGAGAAT+AGG | + | chr8_2:50922881-50922900 | Msa1253470:intron | 30.0% | |
| ! | TTCTATTTGTGGTATTGAAC+CGG | + | chr8_2:50922959-50922978 | Msa1253470:CDS | 30.0% |
| TCATAATACCAATTGTACTC+CGG | - | chr8_2:50922981-50923000 | None:intergenic | 30.0% | |
| !!! | TCCAGCAATAATTTTGATTC+TGG | - | chr8_2:50923024-50923043 | None:intergenic | 30.0% |
| GAATCAAAATTATTGCTGGA+AGG | + | chr8_2:50923024-50923043 | Msa1253470:CDS | 30.0% | |
| TGTTCCTAGGTAAACAATTA+AGG | + | chr8_2:50923082-50923101 | Msa1253470:intron | 30.0% | |
| GTTCCTAGGTAAACAATTAA+GGG | + | chr8_2:50923083-50923102 | Msa1253470:intron | 30.0% | |
| !!! | CCGTATATATTTTGATTGCT+TGG | + | chr8_2:50923133-50923152 | Msa1253470:intron | 30.0% |
| TTAAAGTTGAGATCACTGAT+TGG | + | chr8_2:50923476-50923495 | Msa1253470:CDS | 30.0% | |
| ATTGGAATTTGGTACACAAT+TGG | + | chr8_2:50923494-50923513 | Msa1253470:CDS | 30.0% | |
| TGAGAAACATAACATTAAGG+TGG | + | chr8_2:50923573-50923592 | Msa1253470:CDS | 30.0% | |
| ! | TTGTTTTCAGATTGTTGAAG+AGG | + | chr8_2:50923669-50923688 | Msa1253470:intron | 30.0% |
| TTGAATCACCAAACTCAATA+AGG | - | chr8_2:50923854-50923873 | None:intergenic | 30.0% | |
| ! | CTTTAGACTATTTCCCATTT+TGG | + | chr8_2:50924137-50924156 | Msa1253470:three_prime_UTR | 30.0% |
| ATAAACGGGAAACAAACAAA+AGG | - | chr8_2:50924194-50924213 | None:intergenic | 30.0% | |
| ACAGTTGACAGAAAGATAAA+CGG | - | chr8_2:50924209-50924228 | None:intergenic | 30.0% | |
| CAAACAGTTGAAACATCAAT+AGG | - | chr8_2:50924292-50924311 | None:intergenic | 30.0% | |
| ATTGATGTTTCAACTGTTTG+AGG | + | chr8_2:50924292-50924311 | Msa1253470:three_prime_UTR | 30.0% | |
| CTTGGAAAATACATGCTTGA+AGG | - | chr8_2:50920364-50920383 | None:intergenic | 35.0% | |
| ! | CTTCAAGCATGTATTTTCCA+AGG | + | chr8_2:50920362-50920381 | Msa1253470:five_prime_UTR | 35.0% |
| TATGGTAAATTGAGAGAGAG+AGG | - | chr8_2:50920406-50920425 | None:intergenic | 35.0% | |
| TCCCATTTCAATTTCATTGC+TGG | + | chr8_2:50920449-50920468 | Msa1253470:five_prime_UTR | 35.0% | |
| TGCAAATGATTGAATGACCA+AGG | + | chr8_2:50920832-50920851 | Msa1253470:intron | 35.0% | |
| AGAACAATGATTGTTCACTC+AGG | - | chr8_2:50921003-50921022 | None:intergenic | 35.0% | |
| CTTAAGGACCTGCATATTTA+TGG | + | chr8_2:50921149-50921168 | Msa1253470:intron | 35.0% | |
| ! | CATTCAATTTTGCAACGTAG+AGG | - | chr8_2:50921239-50921258 | None:intergenic | 35.0% |
| CAAAATTGAATGTATGCCGA+CGG | + | chr8_2:50921247-50921266 | Msa1253470:CDS | 35.0% | |
| ! | TTATCGCTACTTTCTCCTAT+TGG | + | chr8_2:50921291-50921310 | Msa1253470:intron | 35.0% |
| CTATCTCAATTACCACCAAT+AGG | - | chr8_2:50921309-50921328 | None:intergenic | 35.0% | |
| ! | CTATTGGTGGTAATTGAGAT+AGG | + | chr8_2:50921307-50921326 | Msa1253470:intron | 35.0% |
| ! | GTTAGATGGGCTTAATCATA+TGG | + | chr8_2:50921334-50921353 | Msa1253470:intron | 35.0% |
| GATTTGAGTAGTTCATCATC+AGG | + | chr8_2:50921598-50921617 | Msa1253470:intron | 35.0% | |
| CATCAGGTTTATTTCAATGG+TGG | + | chr8_2:50921614-50921633 | Msa1253470:intron | 35.0% | |
| ! | TTTTTCCTGTGAAGGTTTAG+TGG | + | chr8_2:50921795-50921814 | Msa1253470:CDS | 35.0% |
| AGGTACAATAATAACCCAAC+AGG | + | chr8_2:50921935-50921954 | Msa1253470:intron | 35.0% | |
| GGTACAATAATAACCCAACA+GGG | + | chr8_2:50921936-50921955 | Msa1253470:intron | 35.0% | |
| TAAAAAAGCTCTTCCCTGTT+GGG | - | chr8_2:50921952-50921971 | None:intergenic | 35.0% | |
| TTAAAAAAGCTCTTCCCTGT+TGG | - | chr8_2:50921953-50921972 | None:intergenic | 35.0% | |
| CAAGTAGAAAAGGAGAGTTA+AGG | - | chr8_2:50922033-50922052 | None:intergenic | 35.0% | |
| ! | ATAAATGATAACGTGGAAGG+AGG | + | chr8_2:50922071-50922090 | Msa1253470:intron | 35.0% |
| CAGATGTAATTGGTATGTTG+TGG | + | chr8_2:50922202-50922221 | Msa1253470:intron | 35.0% | |
| CAAGCTCATTGACATAACAT+TGG | + | chr8_2:50922268-50922287 | Msa1253470:CDS | 35.0% | |
| ATTGATCCCACAAAGAACAA+TGG | - | chr8_2:50922425-50922444 | None:intergenic | 35.0% | |
| AAATGTAAAATCACCACGAC+AGG | - | chr8_2:50922495-50922514 | None:intergenic | 35.0% | |
| ! | TGTCGTGGTGATTTTACATT+TGG | + | chr8_2:50922494-50922513 | Msa1253470:CDS | 35.0% |
| ! | GTCGTGGTGATTTTACATTT+GGG | + | chr8_2:50922495-50922514 | Msa1253470:CDS | 35.0% |
| CTGATTGTCATTAACAGGAT+TGG | + | chr8_2:50922696-50922715 | Msa1253470:intron | 35.0% | |
| ATTGTCATTAACAGGATTGG+TGG | + | chr8_2:50922699-50922718 | Msa1253470:intron | 35.0% | |
| GTCAGATAAAGGAACCATTA+AGG | - | chr8_2:50922769-50922788 | None:intergenic | 35.0% | |
| ! | TGAAGTTGATCGTCAGATAA+AGG | - | chr8_2:50922780-50922799 | None:intergenic | 35.0% |
| GCCAGAATCAAAATTATTGC+TGG | + | chr8_2:50923020-50923039 | Msa1253470:CDS | 35.0% | |
| TGACCCTTAATTGTTTACCT+AGG | - | chr8_2:50923089-50923108 | None:intergenic | 35.0% | |
| TGTAACGTCGCAAATTATGT+GGG | + | chr8_2:50923264-50923283 | Msa1253470:CDS | 35.0% | |
| TGATTATCTGCTTACACTAC+AGG | + | chr8_2:50923393-50923412 | Msa1253470:intron | 35.0% | |
| ! | TGAGATCACTGATTGGAATT+TGG | + | chr8_2:50923483-50923502 | Msa1253470:CDS | 35.0% |
| GTACACAATTGGCGAAATTA+TGG | + | chr8_2:50923505-50923524 | Msa1253470:CDS | 35.0% | |
| ATGATGCTGATCTGATCAAA+AGG | + | chr8_2:50923545-50923564 | Msa1253470:CDS | 35.0% | |
| ! | TTTGGTGATTCAACCAAAAC+TGG | + | chr8_2:50923861-50923880 | Msa1253470:CDS | 35.0% |
| ! | TTGGTGATTCAACCAAAACT+GGG | + | chr8_2:50923862-50923881 | Msa1253470:CDS | 35.0% |
| AACCAAAACTGGGAATAATC+TGG | + | chr8_2:50923872-50923891 | Msa1253470:CDS | 35.0% | |
| TGATCTTTCTCCAATCTCTT+CGG | - | chr8_2:50923976-50923995 | None:intergenic | 35.0% | |
| TTGACACATATCATCTTCTG+CGG | - | chr8_2:50924008-50924027 | None:intergenic | 35.0% | |
| AGGTTGAGAAACTGAACTAA+TGG | + | chr8_2:50924027-50924046 | Msa1253470:CDS | 35.0% | |
| GGTTGAGAAACTGAACTAAT+GGG | + | chr8_2:50924028-50924047 | Msa1253470:exon | 35.0% | |
| GTTGAGAAACTGAACTAATG+GGG | + | chr8_2:50924029-50924048 | Msa1253470:exon | 35.0% | |
| GAAACAAACAAAAGGCTGTA+GGG | - | chr8_2:50924186-50924205 | None:intergenic | 35.0% | |
| CAGTTGACAGAAAGATAAAC+GGG | - | chr8_2:50924208-50924227 | None:intergenic | 35.0% | |
| ACAGTTGAAACATCAATAGG+AGG | - | chr8_2:50924289-50924308 | None:intergenic | 35.0% | |
| TAAATTGAGAGAGAGAGGTC+CGG | - | chr8_2:50920401-50920420 | None:intergenic | 40.0% | |
| GAGAGAGAAAGAGGAAGATA+TGG | - | chr8_2:50920424-50920443 | None:intergenic | 40.0% | |
| ACTCCACTGGAGTTGAAAAA+GGG | - | chr8_2:50920549-50920568 | None:intergenic | 40.0% | |
| AACTCCACTGGAGTTGAAAA+AGG | - | chr8_2:50920550-50920569 | None:intergenic | 40.0% | |
| ACTGGAGTAACTTTCAACCT+TGG | - | chr8_2:50920852-50920871 | None:intergenic | 40.0% | |
| ! | ATTTTGCAACGTAGAGGTGA+TGG | - | chr8_2:50921233-50921252 | None:intergenic | 40.0% |
| GCGATAAATGTTCAACCTGA+AGG | - | chr8_2:50921278-50921297 | None:intergenic | 40.0% | |
| !! | GAAAACCTGCAGTTTTGATC+AGG | + | chr8_2:50921529-50921548 | Msa1253470:intron | 40.0% |
| AAATGCCTGATCAAAACTGC+AGG | - | chr8_2:50921537-50921556 | None:intergenic | 40.0% | |
| AGTGACAATATAGCTTCCCA+TGG | + | chr8_2:50921650-50921669 | Msa1253470:intron | 40.0% | |
| AAGTGTGAGATGAGAACCAT+GGG | - | chr8_2:50921669-50921688 | None:intergenic | 40.0% | |
| AAAGTGTGAGATGAGAACCA+TGG | - | chr8_2:50921670-50921689 | None:intergenic | 40.0% | |
| GTAGAAAAGGAGAGTTAAGG+TGG | - | chr8_2:50922030-50922049 | None:intergenic | 40.0% | |
| GCTCATTGACATAACATTGG+AGG | + | chr8_2:50922271-50922290 | Msa1253470:CDS | 40.0% | |
| TTATGTGGTACGACTGTTAC+AGG | + | chr8_2:50922388-50922407 | Msa1253470:intron | 40.0% | |
| TATGTGGTACGACTGTTACA+GGG | + | chr8_2:50922389-50922408 | Msa1253470:intron | 40.0% | |
| AGAGGATCCATTGTTCTTTG+TGG | + | chr8_2:50922415-50922434 | Msa1253470:CDS | 40.0% | |
| GAGGATCCATTGTTCTTTGT+GGG | + | chr8_2:50922416-50922435 | Msa1253470:CDS | 40.0% | |
| ! | TGATAATTTTCCGGCTGCTA+AGG | + | chr8_2:50922587-50922606 | Msa1253470:CDS | 40.0% |
| ! | TCAAGCATCTGGAACCTTAA+TGG | + | chr8_2:50922752-50922771 | Msa1253470:CDS | 40.0% |
| AGAATTGATTGAGTCGTCTG+AGG | + | chr8_2:50922821-50922840 | Msa1253470:CDS | 40.0% | |
| GTATTGAACCGGAGTACAAT+TGG | + | chr8_2:50922970-50922989 | Msa1253470:CDS | 40.0% | |
| TTGCGACGTTACAGTCAAAA+AGG | - | chr8_2:50923257-50923276 | None:intergenic | 40.0% | |
| CTGTAACGTCGCAAATTATG+TGG | + | chr8_2:50923263-50923282 | Msa1253470:CDS | 40.0% | |
| TCAAGACCTAATTGATGCTC+AGG | + | chr8_2:50923296-50923315 | Msa1253470:CDS | 40.0% | |
| CAAGACCTAATTGATGCTCA+GGG | + | chr8_2:50923297-50923316 | Msa1253470:CDS | 40.0% | |
| AAGACCTAATTGATGCTCAG+GGG | + | chr8_2:50923298-50923317 | Msa1253470:CDS | 40.0% | |
| CGAATTGGCAAGGTTAATAC+AGG | - | chr8_2:50923351-50923370 | None:intergenic | 40.0% | |
| GTATTAACCTTGCCAATTCG+TGG | + | chr8_2:50923351-50923370 | Msa1253470:intron | 40.0% | |
| TCAAAAGCCATACCACGAAT+TGG | - | chr8_2:50923366-50923385 | None:intergenic | 40.0% | |
| AATGTTCCGCTAACACAGAT+TGG | + | chr8_2:50923709-50923728 | Msa1253470:CDS | 40.0% | |
| GTTTCACCAATCTGTGTTAG+CGG | - | chr8_2:50923718-50923737 | None:intergenic | 40.0% | |
| ACAGATTGGTGAAACGCAAT+TGG | + | chr8_2:50923723-50923742 | Msa1253470:CDS | 40.0% | |
| ! | ATAAGGCGCAGCTTTGTAAA+TGG | - | chr8_2:50923837-50923856 | None:intergenic | 40.0% |
| ! | CACCAGATTATTCCCAGTTT+TGG | - | chr8_2:50923877-50923896 | None:intergenic | 40.0% |
| CAAAACTGGGAATAATCTGG+TGG | + | chr8_2:50923875-50923894 | Msa1253470:CDS | 40.0% | |
| GCAGAAGATGATATGTGTCA+AGG | + | chr8_2:50924007-50924026 | Msa1253470:CDS | 40.0% | |
| TCTGATACCAGATTCTGTGT+TGG | + | chr8_2:50924086-50924105 | Msa1253470:three_prime_UTR | 40.0% | |
| GGAAACAAACAAAAGGCTGT+AGG | - | chr8_2:50924187-50924206 | None:intergenic | 40.0% | |
| AAATTGAGAGAGAGAGGTCC+GGG | - | chr8_2:50920400-50920419 | None:intergenic | 45.0% | |
| TGGTGGTTCAGATCTGGTTA+TGG | - | chr8_2:50920486-50920505 | None:intergenic | 45.0% | |
| TTTCTGTGGTGGTTCAGATC+TGG | - | chr8_2:50920492-50920511 | None:intergenic | 45.0% | |
| AACTCCAGTGGAGTTGAACT+CGG | + | chr8_2:50920555-50920574 | Msa1253470:five_prime_UTR | 45.0% | |
| GGTTGAAAGTTACTCCAGTG+AGG | + | chr8_2:50920853-50920872 | Msa1253470:intron | 45.0% | |
| GACCTGCATATTTATGGCTC+TGG | + | chr8_2:50921155-50921174 | Msa1253470:CDS | 45.0% | |
| CACCAGAGCCATAAATATGC+AGG | - | chr8_2:50921160-50921179 | None:intergenic | 45.0% | |
| ! | TCGCTACTTTCTCCTATTGG+TGG | + | chr8_2:50921294-50921313 | Msa1253470:intron | 45.0% |
| CTTTGCCACTAAACCTTCAC+AGG | - | chr8_2:50921803-50921822 | None:intergenic | 45.0% | |
| !! | TGACGTGCAAGCATTGAAAC+TGG | + | chr8_2:50921882-50921901 | Msa1253470:intron | 45.0% |
| ATGTGGTACGACTGTTACAG+GGG | + | chr8_2:50922390-50922409 | Msa1253470:intron | 45.0% | |
| ! | GGTGTCTCGAATGCCTTTTA+CGG | + | chr8_2:50922546-50922565 | Msa1253470:CDS | 45.0% |
| GATCAGCTTGGTACCGTAAA+AGG | - | chr8_2:50922562-50922581 | None:intergenic | 45.0% | |
| CAAGGTCTTAGTCAAGCATC+TGG | + | chr8_2:50922741-50922760 | Msa1253470:CDS | 45.0% | |
| TGATGCATGTACCAAGTGTG+CGG | + | chr8_2:50922998-50923017 | Msa1253470:CDS | 45.0% | |
| AGAGCAGGAATGTTGTTCCT+AGG | + | chr8_2:50923069-50923088 | Msa1253470:CDS | 45.0% | |
| TTAAGGGTCACGCTCATACA+AGG | + | chr8_2:50923099-50923118 | Msa1253470:intron | 45.0% | |
| !! | CAGATTCAAGTTGCATGTCC+AGG | + | chr8_2:50923200-50923219 | Msa1253470:intron | 45.0% |
| ATCCTGTATTGTCCATCACC+TGG | - | chr8_2:50923221-50923240 | None:intergenic | 45.0% | |
| ACGTCGCAAATTATGTGGGA+AGG | + | chr8_2:50923268-50923287 | Msa1253470:CDS | 45.0% | |
| AACCTTGCCAATTCGTGGTA+TGG | + | chr8_2:50923356-50923375 | Msa1253470:intron | 45.0% | |
| TCTTGGTTACCCCAAAGAAC+TGG | + | chr8_2:50923426-50923445 | Msa1253470:CDS | 45.0% | |
| CTTGGTTACCCCAAAGAACT+GGG | + | chr8_2:50923427-50923446 | Msa1253470:CDS | 45.0% | |
| TTGGTTACCCCAAAGAACTG+GGG | + | chr8_2:50923428-50923447 | Msa1253470:CDS | 45.0% | |
| ACCAACATCCCCAGTTCTTT+GGG | - | chr8_2:50923439-50923458 | None:intergenic | 45.0% | |
| AACCAACATCCCCAGTTCTT+TGG | - | chr8_2:50923440-50923459 | None:intergenic | 45.0% | |
| AAAGAACTGGGGATGTTGGT+TGG | + | chr8_2:50923439-50923458 | Msa1253470:CDS | 45.0% | |
| ! | GGCGAAATTATGGTGTCAAG+AGG | + | chr8_2:50923515-50923534 | Msa1253470:CDS | 45.0% |
| GATTGGTGAAACGCAATTGG+AGG | + | chr8_2:50923726-50923745 | Msa1253470:CDS | 45.0% | |
| ! | AAGCTGCGCCTTATTGAGTT+TGG | + | chr8_2:50923843-50923862 | Msa1253470:intron | 45.0% |
| CAAACACCTGGTAGCAAATC+TGG | + | chr8_2:50923906-50923925 | Msa1253470:CDS | 45.0% | |
| GCAGAGGATTCTGCTATACT+TGG | + | chr8_2:50923948-50923967 | Msa1253470:CDS | 45.0% | |
| ! | ATACTTGGCACCGAAGAGAT+TGG | + | chr8_2:50923963-50923982 | Msa1253470:CDS | 45.0% |
| GAGAAACTGAACTAATGGGG+AGG | + | chr8_2:50924032-50924051 | Msa1253470:exon | 45.0% | |
| !! | ACCAGATTCTGTGTTGGTTC+TGG | + | chr8_2:50924092-50924111 | Msa1253470:three_prime_UTR | 45.0% |
| TCCAGAACCAACACAGAATC+TGG | - | chr8_2:50924096-50924115 | None:intergenic | 45.0% | |
| CCAAGGCAACCTTATGTTCC+CGG | + | chr8_2:50920379-50920398 | Msa1253470:five_prime_UTR | 50.0% | |
| ! | GGGAGTGTAGAGAGAGAAAG+AGG | - | chr8_2:50920433-50920452 | None:intergenic | 50.0% |
| CCACTGGAGTTGAAAAAGGG+AGG | - | chr8_2:50920546-50920565 | None:intergenic | 50.0% | |
| !!! | CCTCCCTTTTTCAACTCCAG+TGG | + | chr8_2:50920543-50920562 | Msa1253470:five_prime_UTR | 50.0% |
| AGTCGTGATGGTAACAGCGA+GGG | + | chr8_2:50920597-50920616 | Msa1253470:CDS | 50.0% | |
| TCGCGACGATAACAACGAGA+AGG | + | chr8_2:50920632-50920651 | Msa1253470:CDS | 50.0% | |
| TGTTCTCAGCAACTTCCACC+CGG | + | chr8_2:50921188-50921207 | Msa1253470:CDS | 50.0% | |
| ! | TGCAACGTAGAGGTGATGGT+GGG | - | chr8_2:50921229-50921248 | None:intergenic | 50.0% |
| ! | TTGCAACGTAGAGGTGATGG+TGG | - | chr8_2:50921230-50921249 | None:intergenic | 50.0% |
| ACGACTGTTACAGGGGTAAG+AGG | + | chr8_2:50922397-50922416 | Msa1253470:intron | 50.0% | |
| TCACCACGACAGGAGAGTTT+GGG | - | chr8_2:50922485-50922504 | None:intergenic | 50.0% | |
| ATCACCACGACAGGAGAGTT+TGG | - | chr8_2:50922486-50922505 | None:intergenic | 50.0% | |
| CTACGATACTCCTTAGCAGC+CGG | - | chr8_2:50922600-50922619 | None:intergenic | 50.0% | |
| !! | GATTGGTGGTGCTGCAATTG+AGG | + | chr8_2:50922713-50922732 | Msa1253470:CDS | 50.0% |
| TTTGATTCTGGCCGCACACT+TGG | - | chr8_2:50923012-50923031 | None:intergenic | 50.0% | |
| GTGCTAGATGCAATCAGAGC+AGG | + | chr8_2:50923054-50923073 | Msa1253470:CDS | 50.0% | |
| CAAGTTGCATGTCCAGGTGA+TGG | + | chr8_2:50923206-50923225 | Msa1253470:CDS | 50.0% | |
| !! | GTCCAGGTGATGGACAATAC+AGG | + | chr8_2:50923216-50923235 | Msa1253470:CDS | 50.0% |
| AGCCATACCACGAATTGGCA+AGG | - | chr8_2:50923361-50923380 | None:intergenic | 50.0% | |
| CTACAGGCCAGCAATTCTCT+TGG | + | chr8_2:50923409-50923428 | Msa1253470:intron | 50.0% | |
| GGGGTAACCAAGAGAATTGC+TGG | - | chr8_2:50923419-50923438 | None:intergenic | 50.0% | |
| CCAACATCCCCAGTTCTTTG+GGG | - | chr8_2:50923438-50923457 | None:intergenic | 50.0% | |
| GTGGATAACGAGCAAACACC+TGG | + | chr8_2:50923894-50923913 | Msa1253470:CDS | 50.0% | |
| ACACCTGGTAGCAAATCTGG+AGG | + | chr8_2:50923909-50923928 | Msa1253470:CDS | 50.0% | |
| CACCTGGTAGCAAATCTGGA+GGG | + | chr8_2:50923910-50923929 | Msa1253470:CDS | 50.0% | |
| !! | TTCCCTCCAGATTTGCTACC+AGG | - | chr8_2:50923915-50923934 | None:intergenic | 50.0% |
| GTAGCAAATCTGGAGGGAAG+AGG | + | chr8_2:50923916-50923935 | Msa1253470:CDS | 50.0% | |
| ACAAAAGGCTGTAGGGCCTA+AGG | - | chr8_2:50924179-50924198 | None:intergenic | 50.0% | |
| CCGGGAACATAAGGTTGCCT+TGG | - | chr8_2:50920382-50920401 | None:intergenic | 55.0% | |
| GAGAGAGGTCCGGGAACATA+AGG | - | chr8_2:50920391-50920410 | None:intergenic | 55.0% | |
| TCCAGTGGAGTTGAACTCGG+CGG | + | chr8_2:50920558-50920577 | Msa1253470:five_prime_UTR | 55.0% | |
| CACGACTCGTTGCCATGGAT+CGG | - | chr8_2:50920584-50920603 | None:intergenic | 55.0% | |
| TCCATGGCAACGAGTCGTGA+TGG | + | chr8_2:50920585-50920604 | Msa1253470:exon | 55.0% | |
| ACCATCACGACTCGTTGCCA+TGG | - | chr8_2:50920589-50920608 | None:intergenic | 55.0% | |
| GAGTCGTGATGGTAACAGCG+AGG | + | chr8_2:50920596-50920615 | Msa1253470:CDS | 55.0% | |
| GTTATCGTCGCGACTCGTTG+AGG | - | chr8_2:50920625-50920644 | None:intergenic | 55.0% | |
| !! | CGTAGAGGTGATGGTGGGAA+GGG | - | chr8_2:50921224-50921243 | None:intergenic | 55.0% |
| !! | ACGTAGAGGTGATGGTGGGA+AGG | - | chr8_2:50921225-50921244 | None:intergenic | 55.0% |
| CAACCTGAAGGTGACACCGT+CGG | - | chr8_2:50921266-50921285 | None:intergenic | 55.0% | |
| !! | TGGTGGTGCTGCAATTGAGG+TGG | + | chr8_2:50922716-50922735 | Msa1253470:CDS | 55.0% |
| GCTGCAATTGAGGTGGCTCA+AGG | + | chr8_2:50922723-50922742 | Msa1253470:CDS | 55.0% | |
| CCTGCCCCTGAGCATCAATT+AGG | - | chr8_2:50923305-50923324 | None:intergenic | 55.0% | |
| CCTAATTGATGCTCAGGGGC+AGG | + | chr8_2:50923302-50923321 | Msa1253470:CDS | 55.0% | |
| CCCCAAAGAACTGGGGATGT+TGG | + | chr8_2:50923435-50923454 | Msa1253470:CDS | 55.0% | |
| GAAGAGGTCTGCTGATGCAG+AGG | + | chr8_2:50923932-50923951 | Msa1253470:CDS | 55.0% | |
| ! | TGGGAAGGGTGTGGTTGAGC+CGG | - | chr8_2:50921210-50921229 | None:intergenic | 60.0% |
| !! | AGGTGATGGTGGGAAGGGTG+TGG | - | chr8_2:50921219-50921238 | None:intergenic | 60.0% |
| !! | ATGCCGACGGTGTCACCTTC+AGG | + | chr8_2:50921260-50921279 | Msa1253470:intron | 60.0% |
| CGACCCAAACTCTCCTGTCG+TGG | + | chr8_2:50922479-50922498 | Msa1253470:CDS | 60.0% | |
| GCCGCCGAGTTCAACTCCAC+TGG | - | chr8_2:50920562-50920581 | None:intergenic | 65.0% | |
| TGAACTCGGCGGCCGATCCA+TGG | + | chr8_2:50920569-50920588 | Msa1253470:exon | 65.0% | |
| ! | AAGGGTGTGGTTGAGCCGGG+TGG | - | chr8_2:50921206-50921225 | None:intergenic | 65.0% |
| ! | GGGAAGGGTGTGGTTGAGCC+GGG | - | chr8_2:50921209-50921228 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 50920357 | 50924395 | 50920357 | ID=Msa1253470;Name=Msa1253470 |
| chr8_2 | mRNA | 50920357 | 50924395 | 50920357 | ID=Msa1253470-mRNA-1;Parent=Msa1253470;Name=Msa1253470-mRNA-1;_AED=0.19;_eAED=0.28;_QI=231|0.6|0.72|1|1|1|11|349|484 |
| chr8_2 | exon | 50920357 | 50920653 | 50920357 | ID=Msa1253470-mRNA-1:exon:15554;Parent=Msa1253470-mRNA-1 |
| chr8_2 | exon | 50921155 | 50921268 | 50921155 | ID=Msa1253470-mRNA-1:exon:15555;Parent=Msa1253470-mRNA-1 |
| chr8_2 | exon | 50921712 | 50921821 | 50921712 | ID=Msa1253470-mRNA-1:exon:15556;Parent=Msa1253470-mRNA-1 |
| chr8_2 | exon | 50922205 | 50922300 | 50922205 | ID=Msa1253470-mRNA-1:exon:15557;Parent=Msa1253470-mRNA-1 |
| chr8_2 | exon | 50922410 | 50922622 | 50922410 | ID=Msa1253470-mRNA-1:exon:15558;Parent=Msa1253470-mRNA-1 |
| chr8_2 | exon | 50922713 | 50922842 | 50922713 | ID=Msa1253470-mRNA-1:exon:15559;Parent=Msa1253470-mRNA-1 |
| chr8_2 | exon | 50922936 | 50923090 | 50922936 | ID=Msa1253470-mRNA-1:exon:15560;Parent=Msa1253470-mRNA-1 |
| chr8_2 | exon | 50923203 | 50923323 | 50923203 | ID=Msa1253470-mRNA-1:exon:15561;Parent=Msa1253470-mRNA-1 |
| chr8_2 | exon | 50923415 | 50923594 | 50923415 | ID=Msa1253470-mRNA-1:exon:15562;Parent=Msa1253470-mRNA-1 |
| chr8_2 | exon | 50923679 | 50923747 | 50923679 | ID=Msa1253470-mRNA-1:exon:15563;Parent=Msa1253470-mRNA-1 |
| chr8_2 | exon | 50923846 | 50924395 | 50923846 | ID=Msa1253470-mRNA-1:exon:15564;Parent=Msa1253470-mRNA-1 |
| chr8_2 | five_prime_UTR | 50920357 | 50920587 | 50920357 | ID=Msa1253470-mRNA-1:five_prime_utr;Parent=Msa1253470-mRNA-1 |
| chr8_2 | CDS | 50920588 | 50920653 | 50920588 | ID=Msa1253470-mRNA-1:cds;Parent=Msa1253470-mRNA-1 |
| chr8_2 | CDS | 50921155 | 50921268 | 50921155 | ID=Msa1253470-mRNA-1:cds;Parent=Msa1253470-mRNA-1 |
| chr8_2 | CDS | 50921712 | 50921821 | 50921712 | ID=Msa1253470-mRNA-1:cds;Parent=Msa1253470-mRNA-1 |
| chr8_2 | CDS | 50922205 | 50922300 | 50922205 | ID=Msa1253470-mRNA-1:cds;Parent=Msa1253470-mRNA-1 |
| chr8_2 | CDS | 50922410 | 50922622 | 50922410 | ID=Msa1253470-mRNA-1:cds;Parent=Msa1253470-mRNA-1 |
| chr8_2 | CDS | 50922713 | 50922842 | 50922713 | ID=Msa1253470-mRNA-1:cds;Parent=Msa1253470-mRNA-1 |
| chr8_2 | CDS | 50922936 | 50923090 | 50922936 | ID=Msa1253470-mRNA-1:cds;Parent=Msa1253470-mRNA-1 |
| chr8_2 | CDS | 50923203 | 50923323 | 50923203 | ID=Msa1253470-mRNA-1:cds;Parent=Msa1253470-mRNA-1 |
| chr8_2 | CDS | 50923415 | 50923594 | 50923415 | ID=Msa1253470-mRNA-1:cds;Parent=Msa1253470-mRNA-1 |
| chr8_2 | CDS | 50923679 | 50923747 | 50923679 | ID=Msa1253470-mRNA-1:cds;Parent=Msa1253470-mRNA-1 |
| chr8_2 | CDS | 50923846 | 50924046 | 50923846 | ID=Msa1253470-mRNA-1:cds;Parent=Msa1253470-mRNA-1 |
| chr8_2 | three_prime_UTR | 50924047 | 50924395 | 50924047 | ID=Msa1253470-mRNA-1:three_prime_utr;Parent=Msa1253470-mRNA-1 |
| Gene Sequence |
| Protein sequence |
