AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1253670

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1253670 MtrunA17_Chr8g0370181 89.655 87 9 0 3 89 1 87 3.30e-51 168
Msa1253670 MtrunA17_Chr5g0407381 61.250 80 26 2 10 89 3 77 2.27e-25 97.8
Msa1253670 MtrunA17_Chr3g0144201 53.846 52 24 0 38 89 9 60 3.32e-13 63.2
Msa1253670 MtrunA17_Chr6g0462051 46.429 56 30 0 34 89 3 58 3.99e-12 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1253670 AT5G65970.1 57.627 59 25 0 31 89 25 83 9.41e-18 76.6
Msa1253670 AT5G65970.2 57.627 59 25 0 31 89 25 83 9.65e-18 76.6
Msa1253670 AT2G17480.1 70.000 50 15 0 40 89 39 88 3.19e-17 75.1
Msa1253670 AT1G11310.2 55.769 52 23 0 38 89 6 57 8.31e-15 68.2
Msa1253670 AT1G11310.1 58.000 50 21 0 40 89 8 57 8.52e-15 68.2
Msa1253670 AT2G17430.1 50.000 60 30 0 30 89 21 80 1.96e-14 67.4
Msa1253670 AT2G33670.1 56.863 51 22 0 39 89 14 64 7.55e-14 65.5
Msa1253670 AT1G61560.10 51.923 52 25 0 38 89 6 57 3.48e-13 63.5
Msa1253670 AT1G61560.6 51.923 52 25 0 38 89 6 57 3.75e-13 63.5
Msa1253670 AT1G61560.8 51.923 52 25 0 38 89 6 57 3.75e-13 63.5
Msa1253670 AT1G61560.5 51.923 52 25 0 38 89 6 57 3.75e-13 63.5
Msa1253670 AT1G61560.7 51.923 52 25 0 38 89 6 57 3.77e-13 63.5
Msa1253670 AT1G61560.9 51.923 52 25 0 38 89 6 57 3.77e-13 63.5
Msa1253670 AT1G61560.4 54.000 50 23 0 40 89 8 57 3.85e-13 63.5
Msa1253670 AT1G61560.1 54.000 50 23 0 40 89 8 57 3.93e-13 63.5
Msa1253670 AT2G39200.1 54.000 50 23 0 40 89 6 55 1.85e-12 61.6
Msa1253670 AT1G26700.1 46.552 58 30 1 33 89 2 59 6.36e-12 60.1
Msa1253670 AT1G26700.2 46.552 58 30 1 33 89 2 59 6.36e-12 60.1

Find 146 sgRNAs with CRISPR-Local

Find 363 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTTAATCCGCGCTTCTTTC+TGG 0.071479 8_2:+51289348 None:intergenic
AAACTTATGGCTTCTGATTA+TGG 0.175732 8_2:+51295246 None:intergenic
TAACATATTTCTTGTGGATA+TGG 0.177778 8_2:-51290758 Msa1253670:three_prime_UTR
TTTGCTTACCATCAATATTT+AGG 0.200097 8_2:+51291847 None:intergenic
CAGGATGGCATGCTATGTTT+TGG 0.215943 8_2:-51291741 Msa1253670:three_prime_UTR
TTTATGCCATAATCTGTTAA+TGG 0.223756 8_2:+51295139 None:intergenic
AAACAAAGAAAATGATGATA+TGG 0.240891 8_2:+51295087 None:intergenic
TAATTGGTTGCAGATAATTT+TGG 0.241241 8_2:-51291311 Msa1253670:intron
CATAATTTGCAGTATTCTTT+CGG 0.257506 8_2:-51290655 Msa1253670:intron
ACCAACCCATTAACAGATTA+TGG 0.260766 8_2:-51295145 Msa1253670:five_prime_UTR
GCAATAGCCAAAGTAGCTTT+AGG 0.272741 8_2:-51290598 Msa1253670:three_prime_UTR
ATAATTTGCAGTATTCTTTC+GGG 0.277858 8_2:-51290654 Msa1253670:intron
GCAATCCATTGACAGATATA+AGG 0.291983 8_2:+51293585 None:intergenic
GAGGGCTTTGCTTGAAGCTT+TGG 0.295661 8_2:-51294663 Msa1253670:CDS
ACTTACAATGACAGGAATTA+AGG 0.307925 8_2:+51291714 None:intergenic
TGAAAGTTAAATTTACTTCC+TGG 0.310672 8_2:+51292072 None:intergenic
TTCCTTGTCCTAAATATTGA+TGG 0.327507 8_2:-51291855 Msa1253670:intron
TTATGCCATAATCTGTTAAT+GGG 0.330493 8_2:+51295140 None:intergenic
CAGAAATTGGTCTGCCTCAT+TGG 0.340476 8_2:+51294237 None:intergenic
GAAAGAAGCGCGGATTAAAT+AGG 0.342578 8_2:-51289345 Msa1253670:three_prime_UTR
CAATAGCCAAAGTAGCTTTA+GGG 0.345418 8_2:-51290597 Msa1253670:intron
TTTGCTCTAAATCAATGATT+AGG 0.345810 8_2:-51289188 Msa1253670:three_prime_UTR
GCTTCTTTAGACAGTTCTAT+AGG 0.358464 8_2:-51292228 Msa1253670:three_prime_UTR
GTTACCTCCTTGCAGTTGTA+AGG 0.369007 8_2:+51294112 None:intergenic
ATACCTGGAACAAGGCAAAA+TGG 0.373098 8_2:+51291143 None:intergenic
TTAGACAACATGCCACTTGT+TGG 0.375933 8_2:-51292385 Msa1253670:three_prime_UTR
ATGGCTTCTGATTATGGTAT+TGG 0.379256 8_2:+51295252 None:intergenic
ATCGGTGGTGCTTCCGTCCC+TGG 0.383125 8_2:+51289626 None:intergenic
GCGCTTCTTTCTGGATGATC+AGG 0.385686 8_2:+51289357 None:intergenic
AACATATTTCTTGTGGATAT+GGG 0.388150 8_2:-51290757 Msa1253670:intron
TATATGGACATGGCAGAAAT+TGG 0.393808 8_2:+51294224 None:intergenic
TTGTAAGGGGTAGCATCTTC+TGG 0.396152 8_2:+51294127 None:intergenic
TAAATCCGTTCCGCAGAGTC+AGG 0.397778 8_2:+51292185 None:intergenic
CAAGGGATTCCCCTTGTTCA+AGG 0.401633 8_2:-51291217 Msa1253670:three_prime_UTR
TCAAGGTGGTTGTTGGAGTC+AGG 0.410229 8_2:-51292017 Msa1253670:intron
GTATTAAATTAAATGAGATT+AGG 0.412480 8_2:+51295213 None:intergenic
ATGTCTTTCTGTCATTTCAA+TGG 0.415984 8_2:+51291249 None:intergenic
AACAAAGAAAATGATGATAT+GGG 0.416179 8_2:+51295088 None:intergenic
TTGTTGACAGTCCTGTCCTT+TGG 0.417946 8_2:-51291893 Msa1253670:intron
AACTTACCCTAAAGCTACTT+TGG 0.426096 8_2:+51290591 None:intergenic
GATTCAACAGTGCACTCTAT+TGG 0.426266 8_2:-51289606 Msa1253670:three_prime_UTR
CAATCCATTGACAGATATAA+GGG 0.427025 8_2:+51293586 None:intergenic
CACAACCACAATACTTGAAA+AGG 0.433137 8_2:+51289149 None:intergenic
GCCATAATCTGTTAATGGGT+TGG 0.435581 8_2:+51295144 None:intergenic
TGAGTAACAAGAGCATATAA+TGG 0.437137 8_2:+51290182 None:intergenic
ATCCTTGGAGGATGACTTCA+AGG 0.437300 8_2:-51292034 Msa1253670:three_prime_UTR
GATGACTTCAAGGTGGTTGT+TGG 0.437429 8_2:-51292024 Msa1253670:three_prime_UTR
TGTTGACAGTCCTGTCCTTT+GGG 0.437680 8_2:-51291892 Msa1253670:intron
AGAATATGAGGATGTGTAAC+TGG 0.438582 8_2:+51293561 None:intergenic
CTTACTATATAGAAGAAGAT+TGG 0.444395 8_2:+51292353 None:intergenic
TAAATTTACTTCCTGGTGAC+AGG 0.449075 8_2:+51292079 None:intergenic
AACTGTTTGTTGTTGCTCAA+TGG 0.451958 8_2:+51289404 None:intergenic
TTCAGATAACATATTTCTTG+TGG 0.455613 8_2:-51290764 Msa1253670:three_prime_UTR
AATTGGTCTGCCTCATTGGC+AGG 0.458206 8_2:+51294241 None:intergenic
TATCAGATTGGTAATCATCT+TGG 0.458388 8_2:+51289529 None:intergenic
CCATTGCTGATAAGTGTCAT+TGG 0.459973 8_2:+51289103 None:intergenic
GAAAGTCGAGCGTGCGAACC+AGG 0.460926 8_2:-51289644 Msa1253670:three_prime_UTR
AAAATATATCAAAAGATCCT+TGG 0.464347 8_2:-51292049 Msa1253670:three_prime_UTR
TATTGCTATGGCTTCTTCAC+GGG 0.464366 8_2:-51294972 Msa1253670:CDS
AATCATTGATTTAGAGCAAA+GGG 0.466757 8_2:+51289191 None:intergenic
ATTATATGCTCTTGTTACTC+AGG 0.468536 8_2:-51290180 Msa1253670:intron
TCTTAGAACACTTTCTGCAT+TGG 0.472907 8_2:-51289222 Msa1253670:three_prime_UTR
TTGCTCAATGGTTTCTACAA+TGG 0.475356 8_2:+51289416 None:intergenic
TGTGTAAAACGGAATCTTGA+AGG 0.489533 8_2:+51292422 None:intergenic
GTGCTGTCACAATGCTCCTC+GGG 0.491991 8_2:-51293511 Msa1253670:three_prime_UTR
ATGATGAAGAGGAACATCAT+AGG 0.491993 8_2:-51294180 Msa1253670:three_prime_UTR
ACGATGTTTCATGTGTAAAA+CGG 0.493532 8_2:+51292411 None:intergenic
GTATTGCTATGGCTTCTTCA+CGG 0.497554 8_2:-51294973 Msa1253670:CDS
AATAGAGTGCACTGTTGAAT+CGG 0.497770 8_2:+51289608 None:intergenic
AACAGAATACTTACAATGAC+AGG 0.501258 8_2:+51291706 None:intergenic
CAATGGTTTCTACAATGGCT+TGG 0.501531 8_2:+51289421 None:intergenic
GGACGGCTAAGAAGAATATG+AGG 0.505319 8_2:+51293549 None:intergenic
CCCATGTTGGTGTCTGATCA+AGG 0.506897 8_2:+51294927 None:intergenic
GAAAGACATGCTGTGGTCCA+AGG 0.518835 8_2:-51291235 Msa1253670:three_prime_UTR
CATGTTTGACGTTGGTGATG+TGG 0.523212 8_2:+51289494 None:intergenic
GAGCCCCTTATATCTGTCAA+TGG 0.528753 8_2:-51293590 Msa1253670:three_prime_UTR
AAGAAGCATGGAGTGAAACT+AGG 0.529232 8_2:-51289666 Msa1253670:three_prime_UTR
TCAAGTCACATTGTCAAAGA+TGG 0.529357 8_2:-51291272 Msa1253670:three_prime_UTR
TTACCTCCTTGCAGTTGTAA+GGG 0.530861 8_2:+51294113 None:intergenic
AATGCTCCTCGGGAGACTAA+AGG 0.531991 8_2:-51293501 Msa1253670:intron
GTGCAGGTCCACCTGTCACC+AGG 0.534549 8_2:-51292090 Msa1253670:intron
TAACAAGAGCATATAATGGA+AGG 0.535620 8_2:+51290186 None:intergenic
GGTATTGGTAGAGTGGTGGC+AGG 0.537132 8_2:+51295267 None:intergenic
AGTGCTGTCACAATGCTCCT+CGG 0.543857 8_2:-51293512 Msa1253670:three_prime_UTR
TTTGTCTGAGCCTTGAACAA+GGG 0.549775 8_2:+51291207 None:intergenic
GTACAATGGAAGTATTGCTA+TGG 0.550928 8_2:-51294984 Msa1253670:CDS
TATGTAGATACGAGGATGGA+AGG 0.556059 8_2:-51292782 Msa1253670:intron
CAAACGTTAAAAGCAAAGAA+AGG 0.557655 8_2:+51294293 None:intergenic
TTGTCTGAGCCTTGAACAAG+GGG 0.560509 8_2:+51291208 None:intergenic
TCGAGCGTGCGAACCAGGGA+CGG 0.562166 8_2:-51289639 Msa1253670:three_prime_UTR
AGATACGAGGATGGAAGGCA+TGG 0.566527 8_2:-51292777 Msa1253670:three_prime_UTR
CTTGAACAAGGGGAATCCCT+TGG 0.566793 8_2:+51291218 None:intergenic
ATATATCAAAAGATCCTTGG+AGG 0.572516 8_2:-51292046 Msa1253670:three_prime_UTR
ATGTTTGACGTTGGTGATGT+GGG 0.578433 8_2:+51289495 None:intergenic
TGATTATGGTATTGGTAGAG+TGG 0.579585 8_2:+51295260 None:intergenic
AAACAACGAATGACGCCCAA+AGG 0.580314 8_2:+51291877 None:intergenic
ATTTGATGATCAAACATCAA+AGG 0.581307 8_2:-51289718 Msa1253670:three_prime_UTR
AAAGACATGCTGTGGTCCAA+GGG 0.583506 8_2:-51291234 Msa1253670:three_prime_UTR
GGCTGGGAGATAGGCACAAG+AGG 0.584845 8_2:-51294682 Msa1253670:CDS
CGGGTAGCTCTATATGGACA+TGG 0.586784 8_2:+51294214 None:intergenic
TACCTCCTTGCAGTTGTAAG+GGG 0.593787 8_2:+51294114 None:intergenic
AACGTTTGGACAGAGCTACA+TGG 0.594119 8_2:-51294278 Msa1253670:three_prime_UTR
ATTTACTTCCTGGTGACAGG+TGG 0.595068 8_2:+51292082 None:intergenic
CACGGATACGAGTTTGCCAA+TGG 0.596314 8_2:-51292736 Msa1253670:intron
TAATCATTGATTTAGAGCAA+AGG 0.597523 8_2:+51289190 None:intergenic
TACCATCAATATTTAGGACA+AGG 0.599960 8_2:+51291853 None:intergenic
ATTTGTCTGAGCCTTGAACA+AGG 0.603739 8_2:+51291206 None:intergenic
AACAAGAGCATATAATGGAA+GGG 0.604802 8_2:+51290187 None:intergenic
TTATTTGCATGGTTGTACAA+TGG 0.606123 8_2:-51294998 Msa1253670:CDS
TTATGTCGAAGTACAAGCAA+AGG 0.607346 8_2:-51295039 Msa1253670:CDS
AATATGCATTCCTGCCAATG+AGG 0.611342 8_2:-51294251 Msa1253670:three_prime_UTR
CACCTTGAAGTCATCCTCCA+AGG 0.612962 8_2:+51292032 None:intergenic
GAGTCAATTCAATATCAGAT+TGG 0.613623 8_2:+51289517 None:intergenic
TTGCAAGCTTGTAATCAGCA+TGG 0.614046 8_2:+51290617 None:intergenic
ATCGTAGTGAGTAGAGTGAC+CGG 0.615246 8_2:+51289557 None:intergenic
TGCTACCCCTTACAACTGCA+AGG 0.621465 8_2:-51294119 Msa1253670:three_prime_UTR
ACAAAGAAAATGATGATATG+GGG 0.622475 8_2:+51295089 None:intergenic
GACTACCTGACTCTGCGGAA+CGG 0.625975 8_2:-51292190 Msa1253670:three_prime_UTR
TTCGACATAAACATAAACAT+AGG 0.629977 8_2:+51295052 None:intergenic
CAGACACCAACATGGGCTGT+TGG 0.631951 8_2:-51294920 Msa1253670:CDS
AAAGTCGAGCGTGCGAACCA+GGG 0.634289 8_2:-51289643 Msa1253670:three_prime_UTR
ACGAGGATGGAAGGCATGGG+AGG 0.635904 8_2:-51292773 Msa1253670:three_prime_UTR
GATACGAGGATGGAAGGCAT+GGG 0.637824 8_2:-51292776 Msa1253670:three_prime_UTR
TTACACCGTCACAAAACTAC+CGG 0.638114 8_2:-51289576 Msa1253670:three_prime_UTR
AAGTCTTCACAAAATTGGAA+CGG 0.639934 8_2:-51294852 Msa1253670:intron
ACCTTGATCAGACACCAACA+TGG 0.646672 8_2:-51294928 Msa1253670:CDS
CAGCACTGTATATCACATGA+AGG 0.649502 8_2:+51293528 None:intergenic
AAAATTGAATACCTGGAACA+AGG 0.654833 8_2:+51291135 None:intergenic
GAAGGGTGATGTAACTGCAG+AGG 0.656051 8_2:+51290204 None:intergenic
CACAAACCTTTAGTCTCCCG+AGG 0.656749 8_2:+51293495 None:intergenic
ACTGTTAGCATGTTTGACGT+TGG 0.657174 8_2:+51289486 None:intergenic
ACTGTATATCACATGAAGGA+CGG 0.661116 8_2:+51293532 None:intergenic
GAGGCAGAGACATCGTCTCA+CGG 0.661631 8_2:-51292754 Msa1253670:three_prime_UTR
ACACAACCAACAGCCCATGT+TGG 0.661938 8_2:+51294914 None:intergenic
ATAAGATGAAGAAGCAACTG+AGG 0.662862 8_2:+51291166 None:intergenic
CCTTGATCAGACACCAACAT+GGG 0.673354 8_2:-51294927 Msa1253670:CDS
GCTGGGAGATAGGCACAAGA+GGG 0.683674 8_2:-51294681 Msa1253670:CDS
AGAGTGCACTGTTGAATCGG+TGG 0.700800 8_2:+51289611 None:intergenic
AAGCTGACTACCTGACTCTG+CGG 0.706617 8_2:-51292195 Msa1253670:three_prime_UTR
AATCCATTGACAGATATAAG+GGG 0.709164 8_2:+51293587 None:intergenic
TTATGGTATTGGTAGAGTGG+TGG 0.715780 8_2:+51295263 None:intergenic
AATGACAGAAAGACATGCTG+TGG 0.718463 8_2:-51291242 Msa1253670:three_prime_UTR
CTTGGAGGATGACTTCAAGG+TGG 0.722110 8_2:-51292031 Msa1253670:three_prime_UTR
TGATCATCCAGAAAGAAGCG+CGG 0.723166 8_2:-51289355 Msa1253670:three_prime_UTR
TCTGCGGAACGGATTTATCG+CGG 0.731044 8_2:-51292179 Msa1253670:intron
TACCCCTTACAACTGCAAGG+AGG 0.768461 8_2:-51294116 Msa1253670:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAAATTATAATAATAAAT+AGG + chr8_2:51290647-51290666 None:intergenic 0.0%
!! TTAAAACTTAGTTTAAATTA+AGG - chr8_2:51291166-51291185 Msa1253670:three_prime_UTR 10.0%
!! AAAAATATTCTCTTATATTT+AGG + chr8_2:51291761-51291780 None:intergenic 10.0%
!!! TAAGAGAATATTTTTTTTAA+AGG - chr8_2:51291766-51291785 Msa1253670:intron 10.0%
!! AATAAAATTGGTATAATTAA+TGG + chr8_2:51291913-51291932 None:intergenic 10.0%
!! AAATAAATTCATAAATCAAA+TGG + chr8_2:51292969-51292988 None:intergenic 10.0%
!!! TTTTGAATTATTTATAAGTT+TGG - chr8_2:51292987-51293006 Msa1253670:intron 10.0%
!! AAGTATATAAATCATTTAAT+TGG - chr8_2:51293083-51293102 Msa1253670:intron 10.0%
!! GTATTAAATTAAATGAGATT+AGG + chr8_2:51289200-51289219 None:intergenic 15.0%
!! TATTAGAGAAATATAAAGTA+TGG + chr8_2:51290331-51290350 None:intergenic 15.0%
!!! ACATTTTTATAGTCATATTT+TGG - chr8_2:51290553-51290572 Msa1253670:intron 15.0%
!! TAGTTTAAATTAAGGAATAT+TGG - chr8_2:51291174-51291193 Msa1253670:three_prime_UTR 15.0%
!!! TAAGAAAAGATTATTTTTTC+AGG + chr8_2:51291855-51291874 None:intergenic 15.0%
!!! AATAATCTTTTCTTATATCT+AGG - chr8_2:51291860-51291879 Msa1253670:three_prime_UTR 15.0%
!! TATAATTAATGGTAAATCAA+AGG + chr8_2:51291902-51291921 None:intergenic 15.0%
!! TATTTAAAAAATTGAATACC+TGG + chr8_2:51293285-51293304 None:intergenic 15.0%
!!! CTTTCTAAAATTATTATTTC+AGG + chr8_2:51293426-51293445 None:intergenic 15.0%
!! CAAAAAAAAAATAACATTTG+AGG + chr8_2:51293702-51293721 None:intergenic 15.0%
!!! TTTTTTTTTGTAGATTATGT+TGG - chr8_2:51293712-51293731 Msa1253670:intron 15.0%
!!! TTAATTGTAAAAGAGAATTT+TGG + chr8_2:51293849-51293868 None:intergenic 15.0%
!!! AATTCTCTTTTACAATTAAA+TGG - chr8_2:51293850-51293869 Msa1253670:intron 15.0%
!!! TTGGTTTTGAAAATTGAAAA+TGG + chr8_2:51289250-51289269 None:intergenic 20.0%
!! AACAAAGAAAATGATGATAT+GGG + chr8_2:51289325-51289344 None:intergenic 20.0%
!! AAACAAAGAAAATGATGATA+TGG + chr8_2:51289326-51289345 None:intergenic 20.0%
!!! TTTCTTTTGATTTTCAGTTT+AGG - chr8_2:51289623-51289642 Msa1253670:three_prime_UTR 20.0%
!! AAAATGTTATTGTTCTTCAA+AGG + chr8_2:51290540-51290559 None:intergenic 20.0%
!! TAAATGTTAATTCCTCTTAT+TGG - chr8_2:51290665-51290684 Msa1253670:intron 20.0%
!! AGATAAATGAAATTGACAAA+AGG + chr8_2:51290727-51290746 None:intergenic 20.0%
!! TTATTTCATCACAATATCAA+AGG - chr8_2:51290750-51290769 Msa1253670:intron 20.0%
!! ATGGAAGATTTATACATTTA+TGG - chr8_2:51291052-51291071 Msa1253670:intron 20.0%
!! AAAATTACTAATAATGCACT+CGG + chr8_2:51291268-51291287 None:intergenic 20.0%
!! TTCCAATTTCAAATTATTAG+TGG - chr8_2:51291386-51291405 Msa1253670:intron 20.0%
!! AAAATATATCAAAAGATCCT+TGG - chr8_2:51292361-51292380 Msa1253670:three_prime_UTR 20.0%
!! TCAAATAAATCAATCACAAT+AGG + chr8_2:51293973-51293992 None:intergenic 20.0%
!!! TTCTTTGATTGAAGTATTTT+TGG - chr8_2:51294310-51294329 Msa1253670:exon 20.0%
!! GTAAAATTTGGACTTTATTA+TGG + chr8_2:51294535-51294554 None:intergenic 20.0%
!! TGTATAAATGATAGTAAATG+AGG + chr8_2:51294613-51294632 None:intergenic 20.0%
!! TTTATACATACAAGTTACTA+AGG - chr8_2:51294625-51294644 Msa1253670:intron 20.0%
! TTATGCCATAATCTGTTAAT+GGG + chr8_2:51289273-51289292 None:intergenic 25.0%
! TTTATGCCATAATCTGTTAA+TGG + chr8_2:51289274-51289293 None:intergenic 25.0%
! ACAAAGAAAATGATGATATG+GGG + chr8_2:51289324-51289343 None:intergenic 25.0%
! TTCGACATAAACATAAACAT+AGG + chr8_2:51289361-51289380 None:intergenic 25.0%
! GAAAAAAGTCTTCACAAAAT+TGG - chr8_2:51289553-51289572 Msa1253670:three_prime_UTR 25.0%
!!! TTGATTTTCAGTTTAGGTTA+AGG - chr8_2:51289629-51289648 Msa1253670:three_prime_UTR 25.0%
!! AGTGTTTTGTATATTTTCAG+TGG - chr8_2:51289707-51289726 Msa1253670:three_prime_UTR 25.0%
!!! TATTTTTGTTGCAGAATTGA+TGG - chr8_2:51290084-51290103 Msa1253670:intron 25.0%
!!! ACTTTTGTTTTTTCTTTCTG+TGG - chr8_2:51291018-51291037 Msa1253670:intron 25.0%
! CAATAAGTTATGTCTTTAGA+TGG - chr8_2:51291076-51291095 Msa1253670:intron 25.0%
! AACTTCTTGTATTTGTTTGT+TGG - chr8_2:51291103-51291122 Msa1253670:intron 25.0%
!! CACCACTAATAATTTGAAAT+TGG + chr8_2:51291391-51291410 None:intergenic 25.0%
!! ATTTCTTTTATGTAGATACG+AGG - chr8_2:51291620-51291639 Msa1253670:intron 25.0%
! CTTACTATATAGAAGAAGAT+TGG + chr8_2:51292060-51292079 None:intergenic 25.0%
!!! ACTCTGAAATTTGCAATAAA+TGG + chr8_2:51292161-51292180 None:intergenic 25.0%
! TGAAAGTTAAATTTACTTCC+TGG + chr8_2:51292341-51292360 None:intergenic 25.0%
! TTTGCTTACCATCAATATTT+AGG + chr8_2:51292566-51292585 None:intergenic 25.0%
! AATTCGATAGGAAATAATTG+AGG + chr8_2:51292602-51292621 None:intergenic 25.0%
!!! GTTAATCCGTTTTATTTTTC+AGG - chr8_2:51292650-51292669 Msa1253670:intron 25.0%
! ACAAAGTTGACAAAAAAAAG+TGG + chr8_2:51292925-51292944 None:intergenic 25.0%
!!! TCAGACAAATATTTTTGGTT+TGG - chr8_2:51293217-51293236 Msa1253670:intron 25.0%
!!! CAGACAAATATTTTTGGTTT+GGG - chr8_2:51293218-51293237 Msa1253670:intron 25.0%
! CTAATGAGAGAAAATTACTT+TGG - chr8_2:51293554-51293573 Msa1253670:three_prime_UTR 25.0%
! TTCAGATAACATATTTCTTG+TGG - chr8_2:51293646-51293665 Msa1253670:intron 25.0%
! TAACATATTTCTTGTGGATA+TGG - chr8_2:51293652-51293671 Msa1253670:intron 25.0%
! AACATATTTCTTGTGGATAT+GGG - chr8_2:51293653-51293672 Msa1253670:intron 25.0%
!! CATAATTTGCAGTATTCTTT+CGG - chr8_2:51293755-51293774 Msa1253670:intron 25.0%
!! ATAATTTGCAGTATTCTTTC+GGG - chr8_2:51293756-51293775 Msa1253670:intron 25.0%
!! TAAGTATGAAATGCATTTTG+AGG + chr8_2:51293882-51293901 None:intergenic 25.0%
!! GTTCTTTTCATAAGTTTTCT+TGG + chr8_2:51294087-51294106 None:intergenic 25.0%
! ATAACTTATATGAGAACAGT+TGG - chr8_2:51294109-51294128 Msa1253670:intron 25.0%
! GAATTCATCAGATTACTTTA+TGG + chr8_2:51294155-51294174 None:intergenic 25.0%
! TCATCAAACAATACAAAATC+AGG + chr8_2:51294275-51294294 None:intergenic 25.0%
!! TTGTATTGTTTGATGATTAG+AGG - chr8_2:51294279-51294298 Msa1253670:three_prime_UTR 25.0%
! AAATTCAGTATTATTCTCGA+TGG - chr8_2:51294418-51294437 Msa1253670:intron 25.0%
!! ATAAAGTCCAAATTTTACGA+TGG - chr8_2:51294537-51294556 Msa1253670:intron 25.0%
! ATCAATACCATCGTAAAATT+TGG + chr8_2:51294547-51294566 None:intergenic 25.0%
!! ATTTGATGATCAAACATCAA+AGG - chr8_2:51294692-51294711 Msa1253670:intron 25.0%
!!! AATCATTGATTTAGAGCAAA+GGG + chr8_2:51295222-51295241 None:intergenic 25.0%
!!! TAATCATTGATTTAGAGCAA+AGG + chr8_2:51295223-51295242 None:intergenic 25.0%
!! TTTGCTCTAAATCAATGATT+AGG - chr8_2:51295222-51295241 Msa1253670:intron 25.0%
AAACTTATGGCTTCTGATTA+TGG + chr8_2:51289167-51289186 None:intergenic 30.0%
AGGTAAAGAGAAGAAACTTA+TGG + chr8_2:51289180-51289199 None:intergenic 30.0%
!!! TATGTCTGGTTTTATTTGCA+TGG - chr8_2:51289401-51289420 Msa1253670:three_prime_UTR 30.0%
TTATTTGCATGGTTGTACAA+TGG - chr8_2:51289412-51289431 Msa1253670:three_prime_UTR 30.0%
! TGTTTGTACTGTTTTCATCA+TGG - chr8_2:51289516-51289535 Msa1253670:three_prime_UTR 30.0%
AAGTCTTCACAAAATTGGAA+CGG - chr8_2:51289558-51289577 Msa1253670:three_prime_UTR 30.0%
!! TTTTCAGTTTAGGTTAAGGT+TGG - chr8_2:51289633-51289652 Msa1253670:three_prime_UTR 30.0%
!! TTTAGGTTAAGGTTGGTATT+TGG - chr8_2:51289640-51289659 Msa1253670:three_prime_UTR 30.0%
! TTTTGTATATTTTCAGTGGC+TGG - chr8_2:51289711-51289730 Msa1253670:three_prime_UTR 30.0%
! TTTGTATATTTTCAGTGGCT+GGG - chr8_2:51289712-51289731 Msa1253670:three_prime_UTR 30.0%
!! ATCTGGTAAGATTTTAGTCA+AGG - chr8_2:51289780-51289799 Msa1253670:intron 30.0%
!! TCTGGTAAGATTTTAGTCAA+GGG - chr8_2:51289781-51289800 Msa1253670:intron 30.0%
!! CTTTAATCTAAAGTGTTGGT+TGG + chr8_2:51289836-51289855 None:intergenic 30.0%
! TCGTCTTTAATCTAAAGTGT+TGG + chr8_2:51289840-51289859 None:intergenic 30.0%
CTTTAGATTAAAGACGAGTT+TGG - chr8_2:51289843-51289862 Msa1253670:intron 30.0%
CAAACGTTAAAAGCAAAGAA+AGG + chr8_2:51290120-51290139 None:intergenic 30.0%
!! CTTTCTTTGCTTTTAACGTT+TGG - chr8_2:51290118-51290137 Msa1253670:intron 30.0%
GTGTAATGAGTAATCTAAGT+TGG - chr8_2:51290400-51290419 Msa1253670:intron 30.0%
! ATTTTCTAATGTAGGGAATC+CGG - chr8_2:51290471-51290490 Msa1253670:intron 30.0%
! GCAAAGTGCTATAAAAGAAT+GGG + chr8_2:51290510-51290529 None:intergenic 30.0%
! TGCAAAGTGCTATAAAAGAA+TGG + chr8_2:51290511-51290530 None:intergenic 30.0%
! ATTCTTTTATAGCACTTTGC+AGG - chr8_2:51290510-51290529 Msa1253670:intron 30.0%
AATCCATTGACAGATATAAG+GGG + chr8_2:51290826-51290845 None:intergenic 30.0%
CAATCCATTGACAGATATAA+GGG + chr8_2:51290827-51290846 None:intergenic 30.0%
!! ATTTTTACTGTCAAGCATTG+AGG + chr8_2:51291453-51291472 None:intergenic 30.0%
ACTCTTAGTACAAGTATAAG+TGG - chr8_2:51291483-51291502 Msa1253670:intron 30.0%
TATAAGTGGTAACTAGAACA+TGG - chr8_2:51291497-51291516 Msa1253670:intron 30.0%
CCTAACAAGTTAAACATTTG+TGG + chr8_2:51291545-51291564 None:intergenic 30.0%
!! CCACAAATGTTTAACTTGTT+AGG - chr8_2:51291542-51291561 Msa1253670:intron 30.0%
TCAAGAGTTAGTAACTTAGT+TGG - chr8_2:51291588-51291607 Msa1253670:intron 30.0%
AAAGATCAATGTCATACCAT+TGG + chr8_2:51291693-51291712 None:intergenic 30.0%
!! TCTTTTCTTATATCTAGGAC+TGG - chr8_2:51291865-51291884 Msa1253670:three_prime_UTR 30.0%
GCAGCATTCGAAAATAAAAT+TGG + chr8_2:51291925-51291944 None:intergenic 30.0%
ACGATGTTTCATGTGTAAAA+CGG + chr8_2:51292002-51292021 None:intergenic 30.0%
CAATTTATCTTGCTTCTTTG+AGG - chr8_2:51292116-51292135 Msa1253670:intron 30.0%
TTTGCAATAAATGGAAGAGA+TGG + chr8_2:51292152-51292171 None:intergenic 30.0%
ATATATCAAAAGATCCTTGG+AGG - chr8_2:51292364-51292383 Msa1253670:three_prime_UTR 30.0%
TTCCTTGTCCTAAATATTGA+TGG - chr8_2:51292555-51292574 Msa1253670:intron 30.0%
! TACCATCAATATTTAGGACA+AGG + chr8_2:51292560-51292579 None:intergenic 30.0%
TGCAGAAAAGTAAATTCGAT+AGG + chr8_2:51292614-51292633 None:intergenic 30.0%
TCTGCAGTTGAATATTCAAT+TGG - chr8_2:51292628-51292647 Msa1253670:intron 30.0%
!!! ATCCGTTTTATTTTTCAGGA+TGG - chr8_2:51292654-51292673 Msa1253670:intron 30.0%
TGCCATCCTGAAAAATAAAA+CGG + chr8_2:51292659-51292678 None:intergenic 30.0%
ACTTACAATGACAGGAATTA+AGG + chr8_2:51292699-51292718 None:intergenic 30.0%
AACAGAATACTTACAATGAC+AGG + chr8_2:51292707-51292726 None:intergenic 30.0%
! TTGAAGATTGTTTGAGATGA+AGG - chr8_2:51292740-51292759 Msa1253670:three_prime_UTR 30.0%
! TGAAGATTGTTTGAGATGAA+GGG - chr8_2:51292741-51292760 Msa1253670:three_prime_UTR 30.0%
TCTTTAGTGTGCATCTATAT+TGG - chr8_2:51292831-51292850 Msa1253670:intron 30.0%
ATGAATCTCATCTTGAATTC+TGG - chr8_2:51292856-51292875 Msa1253670:intron 30.0%
! TTTGTCAACTTTGTTTAGTC+AGG - chr8_2:51292931-51292950 Msa1253670:intron 30.0%
! GAATCTCAATTTGATAACCA+TGG - chr8_2:51293050-51293069 Msa1253670:intron 30.0%
TATACTTGTAATCTCAACCA+TGG + chr8_2:51293070-51293089 None:intergenic 30.0%
! ATGTCTTTCTGTCATTTCAA+TGG + chr8_2:51293164-51293183 None:intergenic 30.0%
! AAGGCTCAGACAAATATTTT+TGG - chr8_2:51293212-51293231 Msa1253670:intron 30.0%
AAAATTGAATACCTGGAACA+AGG + chr8_2:51293278-51293297 None:intergenic 30.0%
ATGAGAGAAAATTACTTTGG+AGG - chr8_2:51293557-51293576 Msa1253670:three_prime_UTR 30.0%
! TAACATTTGAGGTGTAAAGA+TGG + chr8_2:51293691-51293710 None:intergenic 30.0%
TTCATCAGATTACTTTATGG+TGG + chr8_2:51294152-51294171 None:intergenic 30.0%
TAATCTGATGAATTCTCATG+TGG - chr8_2:51294160-51294179 Msa1253670:three_prime_UTR 30.0%
! AACAAGAGCATATAATGGAA+GGG + chr8_2:51294226-51294245 None:intergenic 30.0%
! TAACAAGAGCATATAATGGA+AGG + chr8_2:51294227-51294246 None:intergenic 30.0%
! TGAGTAACAAGAGCATATAA+TGG + chr8_2:51294231-51294250 None:intergenic 30.0%
ATTATATGCTCTTGTTACTC+AGG - chr8_2:51294230-51294249 Msa1253670:three_prime_UTR 30.0%
ACTAAGAATGTGTTGGATTT+AGG - chr8_2:51294442-51294461 Msa1253670:intron 30.0%
TTAGTCCTCATATTATAACC+TGG - chr8_2:51294490-51294509 Msa1253670:intron 30.0%
ACAAACCAGGTTATAATATG+AGG + chr8_2:51294498-51294517 None:intergenic 30.0%
! CATATTATAACCTGGTTTGT+AGG - chr8_2:51294498-51294517 Msa1253670:intron 30.0%
!! TGGTATTGATTATTCCTCAA+TGG - chr8_2:51294557-51294576 Msa1253670:intron 30.0%
TACATACAAGTTACTAAGGT+TGG - chr8_2:51294629-51294648 Msa1253670:intron 30.0%
! TTGGTAAAACTTTTGCAGAT+GGG - chr8_2:51294648-51294667 Msa1253670:intron 30.0%
!! CATCAAAGGCGTTAAAAAAA+TGG - chr8_2:51294706-51294725 Msa1253670:intron 30.0%
AATAGTGTGAAAAAGAAGCA+TGG - chr8_2:51294732-51294751 Msa1253670:intron 30.0%
! TATCAGATTGGTAATCATCT+TGG + chr8_2:51294884-51294903 None:intergenic 30.0%
GAGTCAATTCAATATCAGAT+TGG + chr8_2:51294896-51294915 None:intergenic 30.0%
!!! TTGTACCTTTTCAAGTATTG+TGG - chr8_2:51295256-51295275 Msa1253670:intron 30.0%
!! TGATTATGGTATTGGTAGAG+TGG + chr8_2:51289153-51289172 None:intergenic 35.0%
ATGGCTTCTGATTATGGTAT+TGG + chr8_2:51289161-51289180 None:intergenic 35.0%
ACCAACCCATTAACAGATTA+TGG - chr8_2:51289265-51289284 Msa1253670:three_prime_UTR 35.0%
TTATGTCGAAGTACAAGCAA+AGG - chr8_2:51289371-51289390 Msa1253670:three_prime_UTR 35.0%
!!! GCAAAGGTTGTTTTTATGTC+TGG - chr8_2:51289387-51289406 Msa1253670:three_prime_UTR 35.0%
!! GTACAATGGAAGTATTGCTA+TGG - chr8_2:51289426-51289445 Msa1253670:three_prime_UTR 35.0%
CAAGGGATTATTAGTTGTCA+AGG - chr8_2:51289798-51289817 Msa1253670:intron 35.0%
!! GTTGCAGAATTGATGGTTTT+AGG - chr8_2:51290091-51290110 Msa1253670:intron 35.0%
TATATGGACATGGCAGAAAT+TGG + chr8_2:51290189-51290208 None:intergenic 35.0%
!!! TTCATCATTTTTTGCATCGC+GGG + chr8_2:51290218-51290237 None:intergenic 35.0%
!!! CTTCATCATTTTTTGCATCG+CGG + chr8_2:51290219-51290238 None:intergenic 35.0%
CGATGCAAAAAATGATGAAG+AGG - chr8_2:51290219-51290238 Msa1253670:three_prime_UTR 35.0%
ATGATGAAGAGGAACATCAT+AGG - chr8_2:51290230-51290249 Msa1253670:intron 35.0%
CTACACACATTCATTGATCT+CGG + chr8_2:51290444-51290463 None:intergenic 35.0%
! CGTGTGCATTTTCTAATGTA+GGG - chr8_2:51290464-51290483 Msa1253670:intron 35.0%
!! TAAAAGAATGGGAGTGCTAA+TGG + chr8_2:51290499-51290518 None:intergenic 35.0%
GTTAATTCCTCTTATTGGTC+AGG - chr8_2:51290670-51290689 Msa1253670:intron 35.0%
ATTGAAACCTGACCAATAAG+AGG + chr8_2:51290680-51290699 None:intergenic 35.0%
AAAGGAAATAGAAGTTGCAG+AGG + chr8_2:51290709-51290728 None:intergenic 35.0%
TAGCGGCAAATCTTTATTGT+AGG - chr8_2:51290792-51290811 Msa1253670:intron 35.0%
AGCGGCAAATCTTTATTGTA+GGG - chr8_2:51290793-51290812 Msa1253670:intron 35.0%
GCAATCCATTGACAGATATA+AGG + chr8_2:51290828-51290847 None:intergenic 35.0%
AGAATATGAGGATGTGTAAC+TGG + chr8_2:51290852-51290871 None:intergenic 35.0%
ACTGTATATCACATGAAGGA+CGG + chr8_2:51290881-51290900 None:intergenic 35.0%
! AGCTCAATCTATGCATTTTG+AGG - chr8_2:51290980-51290999 Msa1253670:intron 35.0%
!! GCATTTTGAGGATACTGATT+TGG - chr8_2:51290992-51291011 Msa1253670:intron 35.0%
TTCTGTGGAAAAATGATGCA+TGG - chr8_2:51291033-51291052 Msa1253670:intron 35.0%
CATGTGGAGGAAATACTAAT+AGG + chr8_2:51291213-51291232 None:intergenic 35.0%
CTATTAGTATTTCCTCCACA+TGG - chr8_2:51291211-51291230 Msa1253670:three_prime_UTR 35.0%
TTGAATGTAAGCACATGTGT+TGG + chr8_2:51291362-51291381 None:intergenic 35.0%
! TGTTAATGTCAGTGTTGTTC+CGG - chr8_2:51291417-51291436 Msa1253670:intron 35.0%
!! AGTAACTTAGTTGGTGATTG+AGG - chr8_2:51291597-51291616 Msa1253670:intron 35.0%
! CTTTTATGTAGATACGAGGA+TGG - chr8_2:51291624-51291643 Msa1253670:intron 35.0%
ATGAAAGCTATTACTCTCTG+CGG - chr8_2:51291734-51291753 Msa1253670:three_prime_UTR 35.0%
! TTTCTTATATCTAGGACTGG+AGG - chr8_2:51291868-51291887 Msa1253670:three_prime_UTR 35.0%
! TTCTTATATCTAGGACTGGA+GGG - chr8_2:51291869-51291888 Msa1253670:three_prime_UTR 35.0%
TGTGTAAAACGGAATCTTGA+AGG + chr8_2:51291991-51292010 None:intergenic 35.0%
!! TGGAATTTTAGTCCAACAAG+TGG + chr8_2:51292040-51292059 None:intergenic 35.0%
AGCATGCGTATTAGTAAAGT+TGG + chr8_2:51292084-51292103 None:intergenic 35.0%
!! TAATACGCATGCTGTTTCAT+AGG - chr8_2:51292091-51292110 Msa1253670:intron 35.0%
GCTTCTTTAGACAGTTCTAT+AGG - chr8_2:51292182-51292201 Msa1253670:three_prime_UTR 35.0%
TAAATTTACTTCCTGGTGAC+AGG + chr8_2:51292334-51292353 None:intergenic 35.0%
TCAAGTCACATTGTCAAAGA+TGG - chr8_2:51293138-51293157 Msa1253670:intron 35.0%
ATAAGATGAAGAAGCAACTG+AGG + chr8_2:51293247-51293266 None:intergenic 35.0%
TTGAATGTAACCACATGTGT+CGG - chr8_2:51293454-51293473 Msa1253670:intron 35.0%
! CAATAGCCAAAGTAGCTTTA+GGG - chr8_2:51293813-51293832 Msa1253670:intron 35.0%
AACTTACCCTAAAGCTACTT+TGG + chr8_2:51293822-51293841 None:intergenic 35.0%
TATGAGCATGTAGTTGTTTG+AGG - chr8_2:51293920-51293939 Msa1253670:intron 35.0%
! AAGTTTTCTTGGAGAGCTTA+TGG + chr8_2:51294076-51294095 None:intergenic 35.0%
!!! GAATTCTCATGTGGTTTTGA+AGG - chr8_2:51294169-51294188 Msa1253670:three_prime_UTR 35.0%
!!! CATGTGGTTTTGAAGGTTTT+TGG - chr8_2:51294176-51294195 Msa1253670:three_prime_UTR 35.0%
CACGTCATGTTTATCCTAAT+AGG - chr8_2:51294354-51294373 Msa1253670:intron 35.0%
GTTTATCCTAATAGGACAGA+AGG - chr8_2:51294362-51294381 Msa1253670:intron 35.0%
! ACAAAGCATTATGGAATCAG+AGG + chr8_2:51294471-51294490 None:intergenic 35.0%
! TGAGGACTAACAAAGCATTA+TGG + chr8_2:51294480-51294499 None:intergenic 35.0%
!! GTTGGTAAAACTTTTGCAGA+TGG - chr8_2:51294647-51294666 Msa1253670:intron 35.0%
AATAGAGTGCACTGTTGAAT+CGG + chr8_2:51294805-51294824 None:intergenic 35.0%
TTGCTCAATGGTTTCTACAA+TGG + chr8_2:51294997-51295016 None:intergenic 35.0%
!! AACTGTTTGTTGTTGCTCAA+TGG + chr8_2:51295009-51295028 None:intergenic 35.0%
TCTTAGAACACTTTCTGCAT+TGG - chr8_2:51295188-51295207 Msa1253670:five_prime_UTR 35.0%
CACAACCACAATACTTGAAA+AGG + chr8_2:51295264-51295283 None:intergenic 35.0%
!! TTATGGTATTGGTAGAGTGG+TGG + chr8_2:51289150-51289169 None:intergenic 40.0%
! GCCATAATCTGTTAATGGGT+TGG + chr8_2:51289269-51289288 None:intergenic 40.0%
GTATTGCTATGGCTTCTTCA+CGG - chr8_2:51289437-51289456 Msa1253670:three_prime_UTR 40.0%
TATTGCTATGGCTTCTTCAC+GGG - chr8_2:51289438-51289457 Msa1253670:three_prime_UTR 40.0%
!! GCTTTGGAGAAAGTCAAATC+TGG - chr8_2:51289763-51289782 Msa1253670:intron 40.0%
TTGAATGTAACTACATGCGC+CGG + chr8_2:51289898-51289917 None:intergenic 40.0%
!! GAATTATGAAGCACTGACAC+TGG + chr8_2:51289979-51289998 None:intergenic 40.0%
AATATGCATTCCTGCCAATG+AGG - chr8_2:51290159-51290178 Msa1253670:intron 40.0%
TTACCTCCTTGCAGTTGTAA+GGG + chr8_2:51290300-51290319 None:intergenic 40.0%
!! CTCGGTTACTGATTTGAGAT+CGG + chr8_2:51290426-51290445 None:intergenic 40.0%
! GCGTGTGCATTTTCTAATGT+AGG - chr8_2:51290463-51290482 Msa1253670:intron 40.0%
CCTTCTGCTTTCATTCTTAG+CGG - chr8_2:51290775-51290794 Msa1253670:intron 40.0%
CAGCACTGTATATCACATGA+AGG + chr8_2:51290885-51290904 None:intergenic 40.0%
TTAGTATTTCCTCCACATGG+AGG - chr8_2:51291214-51291233 Msa1253670:three_prime_UTR 40.0%
TAGTATTTCCTCCACATGGA+GGG - chr8_2:51291215-51291234 Msa1253670:three_prime_UTR 40.0%
AGGAAGAGAGGAGATGAAAA+AGG - chr8_2:51291239-51291258 Msa1253670:three_prime_UTR 40.0%
GGAAGAGAGGAGATGAAAAA+GGG - chr8_2:51291240-51291259 Msa1253670:three_prime_UTR 40.0%
TATGTAGATACGAGGATGGA+AGG - chr8_2:51291628-51291647 Msa1253670:intron 40.0%
ACATGATCAATGCACAACAG+AGG + chr8_2:51291964-51291983 None:intergenic 40.0%
! TTAGACAACATGCCACTTGT+TGG - chr8_2:51292025-51292044 Msa1253670:three_prime_UTR 40.0%
CAAGATGAACGGTCAAGTAA+CGG + chr8_2:51292301-51292320 None:intergenic 40.0%
! AGGATGGCATGCTATGTTTT+GGG - chr8_2:51292670-51292689 Msa1253670:intron 40.0%
TCGCTTGTATCAGAAGCTAT+TGG + chr8_2:51292769-51292788 None:intergenic 40.0%
TGAATCAGTACCACCTAAAC+TGG - chr8_2:51292889-51292908 Msa1253670:intron 40.0%
GAATCAGTACCACCTAAACT+GGG - chr8_2:51292890-51292909 Msa1253670:intron 40.0%
AATGACAGAAAGACATGCTG+TGG - chr8_2:51293168-51293187 Msa1253670:intron 40.0%
TTTGTCTGAGCCTTGAACAA+GGG + chr8_2:51293206-51293225 None:intergenic 40.0%
ATTTGTCTGAGCCTTGAACA+AGG + chr8_2:51293207-51293226 None:intergenic 40.0%
!! TATCCATTTTGCCTTGTTCC+AGG - chr8_2:51293264-51293283 Msa1253670:intron 40.0%
ATACCTGGAACAAGGCAAAA+TGG + chr8_2:51293270-51293289 None:intergenic 40.0%
!! ATGAAGCACTGACACAAACA+CGG - chr8_2:51293379-51293398 Msa1253670:intron 40.0%
TTATTGAACACCGACACATG+TGG + chr8_2:51293467-51293486 None:intergenic 40.0%
! CATGTGTCGGTGTTCAATAA+CGG - chr8_2:51293467-51293486 Msa1253670:intron 40.0%
TGTTCAATAACGGCACATGT+CGG - chr8_2:51293477-51293496 Msa1253670:intron 40.0%
GGACATGCAAGTAAAGAAGT+AGG - chr8_2:51293505-51293524 Msa1253670:three_prime_UTR 40.0%
ATTAGTGCAACGACTGAACT+AGG + chr8_2:51293539-51293558 None:intergenic 40.0%
TTGCAAGCTTGTAATCAGCA+TGG + chr8_2:51293796-51293815 None:intergenic 40.0%
GCAATAGCCAAAGTAGCTTT+AGG - chr8_2:51293812-51293831 Msa1253670:intron 40.0%
! GTAGTTGTTTGAGGCTGTAT+CGG - chr8_2:51293929-51293948 Msa1253670:intron 40.0%
AATAGGCAGTAGAGACTAGA+AGG + chr8_2:51293956-51293975 None:intergenic 40.0%
! AACATGACGTGTGTTGATCT+CGG + chr8_2:51294345-51294364 None:intergenic 40.0%
ACTAGTCCTTCTGTCCTATT+AGG + chr8_2:51294371-51294390 None:intergenic 40.0%
! AATAGGACAGAAGGACTAGT+AGG - chr8_2:51294371-51294390 Msa1253670:intron 40.0%
CAAAACATGCTCAACCATTG+AGG + chr8_2:51294574-51294593 None:intergenic 40.0%
! AAGAAGCATGGAGTGAAACT+AGG - chr8_2:51294744-51294763 Msa1253670:intron 40.0%
GATTCAACAGTGCACTCTAT+TGG - chr8_2:51294804-51294823 Msa1253670:intron 40.0%
! GTTTTGTGACGGTGTAATGT+GGG + chr8_2:51294831-51294850 None:intergenic 40.0%
!! AGTTTTGTGACGGTGTAATG+TGG + chr8_2:51294832-51294851 None:intergenic 40.0%
TTACACCGTCACAAAACTAC+CGG - chr8_2:51294834-51294853 Msa1253670:intron 40.0%
!! ATGTTTGACGTTGGTGATGT+GGG + chr8_2:51294918-51294937 None:intergenic 40.0%
ACTGTTAGCATGTTTGACGT+TGG + chr8_2:51294927-51294946 None:intergenic 40.0%
CAATGGTTTCTACAATGGCT+TGG + chr8_2:51294992-51295011 None:intergenic 40.0%
ATTTAATCCGCGCTTCTTTC+TGG + chr8_2:51295065-51295084 None:intergenic 40.0%
! GAAAGAAGCGCGGATTAAAT+AGG - chr8_2:51295065-51295084 Msa1253670:exon 40.0%
ACCTTGATCAGACACCAACA+TGG - chr8_2:51289482-51289501 Msa1253670:three_prime_UTR 45.0%
CCTTGATCAGACACCAACAT+GGG - chr8_2:51289483-51289502 Msa1253670:three_prime_UTR 45.0%
! ATTTTCAGTGGCTGGGAGAT+AGG - chr8_2:51289719-51289738 Msa1253670:three_prime_UTR 45.0%
CTGACACGTGTTAGTGTTGT+TGG - chr8_2:51289869-51289888 Msa1253670:intron 45.0%
AATACGTGTCAGTGTGAGTG+TGG - chr8_2:51289950-51289969 Msa1253670:intron 45.0%
AACGTTTGGACAGAGCTACA+TGG - chr8_2:51290132-51290151 Msa1253670:intron 45.0%
! CAGAAATTGGTCTGCCTCAT+TGG + chr8_2:51290176-51290195 None:intergenic 45.0%
TTGTAAGGGGTAGCATCTTC+TGG + chr8_2:51290286-51290305 None:intergenic 45.0%
TACCTCCTTGCAGTTGTAAG+GGG + chr8_2:51290299-51290318 None:intergenic 45.0%
GTTACCTCCTTGCAGTTGTA+AGG + chr8_2:51290301-51290320 None:intergenic 45.0%
!! AATGGGAGTGCTAATGGATC+CGG + chr8_2:51290493-51290512 None:intergenic 45.0%
CCGCTAAGAATGAAAGCAGA+AGG + chr8_2:51290778-51290797 None:intergenic 45.0%
GAGCCCCTTATATCTGTCAA+TGG - chr8_2:51290820-51290839 Msa1253670:intron 45.0%
GGACGGCTAAGAAGAATATG+AGG + chr8_2:51290864-51290883 None:intergenic 45.0%
GTGCGTCTTTCTTTGTGTGT+TGG - chr8_2:51290935-51290954 Msa1253670:intron 45.0%
ACACAAACGCAGATGCTTGA+AGG - chr8_2:51291302-51291321 Msa1253670:intron 45.0%
! TTGAAGGTGTGTCTGGTGTT+TGG - chr8_2:51291318-51291337 Msa1253670:intron 45.0%
! CACATGTGTTGGTGTGTTCT+CGG + chr8_2:51291351-51291370 None:intergenic 45.0%
ATTTACTTCCTGGTGACAGG+TGG + chr8_2:51292331-51292350 None:intergenic 45.0%
ATCCTTGGAGGATGACTTCA+AGG - chr8_2:51292376-51292395 Msa1253670:three_prime_UTR 45.0%
GATGACTTCAAGGTGGTTGT+TGG - chr8_2:51292386-51292405 Msa1253670:three_prime_UTR 45.0%
!!! TGTTTTTTCCGCGCGATAAC+TGG - chr8_2:51292456-51292475 Msa1253670:intron 45.0%
TTTCCAAACCAGTTATCGCG+CGG + chr8_2:51292467-51292486 None:intergenic 45.0%
TTGTTGACAGTCCTGTCCTT+TGG - chr8_2:51292517-51292536 Msa1253670:intron 45.0%
TGTTGACAGTCCTGTCCTTT+GGG - chr8_2:51292518-51292537 Msa1253670:intron 45.0%
AAACAACGAATGACGCCCAA+AGG + chr8_2:51292536-51292555 None:intergenic 45.0%
! CAGGATGGCATGCTATGTTT+TGG - chr8_2:51292669-51292688 Msa1253670:intron 45.0%
! GGATGGCATGCTATGTTTTG+GGG - chr8_2:51292671-51292690 Msa1253670:intron 45.0%
GATACAAGCGAGTCGTATCT+CGG - chr8_2:51292778-51292797 Msa1253670:three_prime_UTR 45.0%
AAAGACATGCTGTGGTCCAA+GGG - chr8_2:51293176-51293195 Msa1253670:intron 45.0%
TTGTCTGAGCCTTGAACAAG+GGG + chr8_2:51293205-51293224 None:intergenic 45.0%
CGATGGCACTAAGAATGTGT+TGG - chr8_2:51294435-51294454 Msa1253670:intron 45.0%
CTAACTCTCTCCTACAAACC+AGG + chr8_2:51294511-51294530 None:intergenic 45.0%
! CTGGTTTGTAGGAGAGAGTT+AGG - chr8_2:51294509-51294528 Msa1253670:intron 45.0%
!!! AGTGACCGGTAGTTTTGTGA+CGG + chr8_2:51294842-51294861 None:intergenic 45.0%
ATCGTAGTGAGTAGAGTGAC+CGG + chr8_2:51294856-51294875 None:intergenic 45.0%
!! CATGTTTGACGTTGGTGATG+TGG + chr8_2:51294919-51294938 None:intergenic 45.0%
TGATCATCCAGAAAGAAGCG+CGG - chr8_2:51295055-51295074 Msa1253670:exon 45.0%
!! TAAATTATTTAAAGATAATT+TGG - chr8_2:51290372-51290391 Msa1253670:intron 5.0%
! CCCATGTTGGTGTCTGATCA+AGG + chr8_2:51289486-51289505 None:intergenic 50.0%
ACACAACCAACAGCCCATGT+TGG + chr8_2:51289499-51289518 None:intergenic 50.0%
GAGGGCTTTGCTTGAAGCTT+TGG - chr8_2:51289747-51289766 Msa1253670:three_prime_UTR 50.0%
! GTGTTAGTGTTGTTGGCCAC+CGG - chr8_2:51289876-51289895 Msa1253670:intron 50.0%
AATGTAACTACATGCGCCGG+TGG + chr8_2:51289895-51289914 None:intergenic 50.0%
! AATTGGTCTGCCTCATTGGC+AGG + chr8_2:51290172-51290191 None:intergenic 50.0%
! CGGGTAGCTCTATATGGACA+TGG + chr8_2:51290199-51290218 None:intergenic 50.0%
TGCTACCCCTTACAACTGCA+AGG - chr8_2:51290291-51290310 Msa1253670:intron 50.0%
TACCCCTTACAACTGCAAGG+AGG - chr8_2:51290294-51290313 Msa1253670:intron 50.0%
AGTGCTGTCACAATGCTCCT+CGG - chr8_2:51290898-51290917 Msa1253670:intron 50.0%
AATGCTCCTCGGGAGACTAA+AGG - chr8_2:51290909-51290928 Msa1253670:intron 50.0%
CACAAACCTTTAGTCTCCCG+AGG + chr8_2:51290918-51290937 None:intergenic 50.0%
ATTTCCTCCACATGGAGGGT+AGG - chr8_2:51291219-51291238 Msa1253670:three_prime_UTR 50.0%
! CAGATGCTTGAAGGTGTGTC+TGG - chr8_2:51291311-51291330 Msa1253670:intron 50.0%
AGATACGAGGATGGAAGGCA+TGG - chr8_2:51291633-51291652 Msa1253670:intron 50.0%
! GATACGAGGATGGAAGGCAT+GGG - chr8_2:51291634-51291653 Msa1253670:intron 50.0%
CACGGATACGAGTTTGCCAA+TGG - chr8_2:51291674-51291693 Msa1253670:intron 50.0%
AAGCTGACTACCTGACTCTG+CGG - chr8_2:51292215-51292234 Msa1253670:three_prime_UTR 50.0%
TAAATCCGTTCCGCAGAGTC+AGG + chr8_2:51292228-51292247 None:intergenic 50.0%
! TCTGCGGAACGGATTTATCG+CGG - chr8_2:51292231-51292250 Msa1253670:three_prime_UTR 50.0%
!! GAACGGTCAAGTAACGGATG+CGG + chr8_2:51292295-51292314 None:intergenic 50.0%
CTTGACCGTTCATCTTGTGC+AGG - chr8_2:51292304-51292323 Msa1253670:intron 50.0%
GTGGACCTGCACAAGATGAA+CGG + chr8_2:51292312-51292331 None:intergenic 50.0%
CACCTTGAAGTCATCCTCCA+AGG + chr8_2:51292381-51292400 None:intergenic 50.0%
CTTGGAGGATGACTTCAAGG+TGG - chr8_2:51292379-51292398 Msa1253670:three_prime_UTR 50.0%
TCAAGGTGGTTGTTGGAGTC+AGG - chr8_2:51292393-51292412 Msa1253670:three_prime_UTR 50.0%
TTTCCGCGCGATAACTGGTT+TGG - chr8_2:51292461-51292480 Msa1253670:intron 50.0%
CTAGCTACACCCAGTTTAGG+TGG + chr8_2:51292902-51292921 None:intergenic 50.0%
! TGGCTAGCTACACCCAGTTT+AGG + chr8_2:51292905-51292924 None:intergenic 50.0%
GAAAGACATGCTGTGGTCCA+AGG - chr8_2:51293175-51293194 Msa1253670:intron 50.0%
CTTGAACAAGGGGAATCCCT+TGG + chr8_2:51293195-51293214 None:intergenic 50.0%
CAAGGGATTCCCCTTGTTCA+AGG - chr8_2:51293193-51293212 Msa1253670:intron 50.0%
GAAGGGTGATGTAACTGCAG+AGG + chr8_2:51294209-51294228 None:intergenic 50.0%
AGAGTGCACTGTTGAATCGG+TGG + chr8_2:51294802-51294821 None:intergenic 50.0%
GCGCTTCTTTCTGGATGATC+AGG + chr8_2:51295056-51295075 None:intergenic 50.0%
!! GGTATTGGTAGAGTGGTGGC+AGG + chr8_2:51289146-51289165 None:intergenic 55.0%
! CAGACACCAACATGGGCTGT+TGG - chr8_2:51289490-51289509 Msa1253670:three_prime_UTR 55.0%
GCTGGGAGATAGGCACAAGA+GGG - chr8_2:51289729-51289748 Msa1253670:three_prime_UTR 55.0%
! GCATCGCGGGTAGCTCTATA+TGG + chr8_2:51290205-51290224 None:intergenic 55.0%
GTGCTGTCACAATGCTCCTC+GGG - chr8_2:51290899-51290918 Msa1253670:intron 55.0%
TCTTCCTACCCTCCATGTGG+AGG + chr8_2:51291226-51291245 None:intergenic 55.0%
CTCTCTTCCTACCCTCCATG+TGG + chr8_2:51291229-51291248 None:intergenic 55.0%
CACATGGAGGGTAGGAAGAG+AGG - chr8_2:51291227-51291246 Msa1253670:three_prime_UTR 55.0%
GCATTGAGGCAGACACACAC+CGG + chr8_2:51291439-51291458 None:intergenic 55.0%
GAGGCAGAGACATCGTCTCA+CGG - chr8_2:51291656-51291675 Msa1253670:intron 55.0%
GACTACCTGACTCTGCGGAA+CGG - chr8_2:51292220-51292239 Msa1253670:three_prime_UTR 55.0%
ACGAATGACGCCCAAAGGAC+AGG + chr8_2:51292531-51292550 None:intergenic 55.0%
TAACGGCACATGTCGGACAC+TGG - chr8_2:51293484-51293503 Msa1253670:intron 55.0%
AAAGTCGAGCGTGCGAACCA+GGG - chr8_2:51294767-51294786 Msa1253670:intron 55.0%
GGCTGGGAGATAGGCACAAG+AGG - chr8_2:51289728-51289747 Msa1253670:three_prime_UTR 60.0%
! ACGAGGATGGAAGGCATGGG+AGG - chr8_2:51291637-51291656 Msa1253670:intron 60.0%
GAAAGTCGAGCGTGCGAACC+AGG - chr8_2:51294766-51294785 Msa1253670:intron 60.0%
GTGCAGGTCCACCTGTCACC+AGG - chr8_2:51292320-51292339 Msa1253670:intron 65.0%
TCGAGCGTGCGAACCAGGGA+CGG - chr8_2:51294771-51294790 Msa1253670:intron 65.0%
ATCGGTGGTGCTTCCGTCCC+TGG + chr8_2:51294787-51294806 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 51289111 51295321 51289111 ID=Msa1253670;Name=Msa1253670
chr8_2 mRNA 51289111 51295321 51289111 ID=Msa1253670-mRNA-1;Parent=Msa1253670;Name=Msa1253670-mRNA-1;_AED=0.33;_eAED=0.33;_QI=223|0.93|0.94|1|0.68|0.70|17|1707|90
chr8_2 exon 51289111 51289140 51289111 ID=Msa1253670-mRNA-1:exon:15755;Parent=Msa1253670-mRNA-1
chr8_2 exon 51289163 51289766 51289163 ID=Msa1253670-mRNA-1:exon:15754;Parent=Msa1253670-mRNA-1
chr8_2 exon 51290181 51290241 51290181 ID=Msa1253670-mRNA-1:exon:15753;Parent=Msa1253670-mRNA-1
chr8_2 exon 51290598 51290665 51290598 ID=Msa1253670-mRNA-1:exon:15752;Parent=Msa1253670-mRNA-1
chr8_2 exon 51290758 51290793 51290758 ID=Msa1253670-mRNA-1:exon:15751;Parent=Msa1253670-mRNA-1
chr8_2 exon 51291147 51291320 51291147 ID=Msa1253670-mRNA-1:exon:15750;Parent=Msa1253670-mRNA-1
chr8_2 exon 51291720 51291760 51291720 ID=Msa1253670-mRNA-1:exon:15749;Parent=Msa1253670-mRNA-1
chr8_2 exon 51291856 51291905 51291856 ID=Msa1253670-mRNA-1:exon:15748;Parent=Msa1253670-mRNA-1
chr8_2 exon 51292018 51292106 51292018 ID=Msa1253670-mRNA-1:exon:15747;Parent=Msa1253670-mRNA-1
chr8_2 exon 51292180 51292254 51292180 ID=Msa1253670-mRNA-1:exon:15746;Parent=Msa1253670-mRNA-1
chr8_2 exon 51292358 51292446 51292358 ID=Msa1253670-mRNA-1:exon:15745;Parent=Msa1253670-mRNA-1
chr8_2 exon 51292737 51292797 51292737 ID=Msa1253670-mRNA-1:exon:15744;Parent=Msa1253670-mRNA-1
chr8_2 exon 51293502 51293618 51293502 ID=Msa1253670-mRNA-1:exon:15743;Parent=Msa1253670-mRNA-1
chr8_2 exon 51294117 51294334 51294117 ID=Msa1253670-mRNA-1:exon:15742;Parent=Msa1253670-mRNA-1
chr8_2 exon 51294658 51294705 51294658 ID=Msa1253670-mRNA-1:exon:15741;Parent=Msa1253670-mRNA-1
chr8_2 exon 51294853 51295232 51294853 ID=Msa1253670-mRNA-1:exon:15740;Parent=Msa1253670-mRNA-1
chr8_2 exon 51295260 51295321 51295260 ID=Msa1253670-mRNA-1:exon:15739;Parent=Msa1253670-mRNA-1
chr8_2 five_prime_UTR 51295260 51295321 51295260 ID=Msa1253670-mRNA-1:five_prime_utr;Parent=Msa1253670-mRNA-1
chr8_2 five_prime_UTR 51295072 51295232 51295072 ID=Msa1253670-mRNA-1:five_prime_utr;Parent=Msa1253670-mRNA-1
chr8_2 CDS 51294853 51295071 51294853 ID=Msa1253670-mRNA-1:cds;Parent=Msa1253670-mRNA-1
chr8_2 CDS 51294658 51294705 51294658 ID=Msa1253670-mRNA-1:cds;Parent=Msa1253670-mRNA-1
chr8_2 CDS 51294329 51294334 51294329 ID=Msa1253670-mRNA-1:cds;Parent=Msa1253670-mRNA-1
chr8_2 three_prime_UTR 51294117 51294328 51294117 ID=Msa1253670-mRNA-1:three_prime_utr;Parent=Msa1253670-mRNA-1
chr8_2 three_prime_UTR 51293502 51293618 51293502 ID=Msa1253670-mRNA-1:three_prime_utr;Parent=Msa1253670-mRNA-1
chr8_2 three_prime_UTR 51292737 51292797 51292737 ID=Msa1253670-mRNA-1:three_prime_utr;Parent=Msa1253670-mRNA-1
chr8_2 three_prime_UTR 51292358 51292446 51292358 ID=Msa1253670-mRNA-1:three_prime_utr;Parent=Msa1253670-mRNA-1
chr8_2 three_prime_UTR 51292180 51292254 51292180 ID=Msa1253670-mRNA-1:three_prime_utr;Parent=Msa1253670-mRNA-1
chr8_2 three_prime_UTR 51292018 51292106 51292018 ID=Msa1253670-mRNA-1:three_prime_utr;Parent=Msa1253670-mRNA-1
chr8_2 three_prime_UTR 51291856 51291905 51291856 ID=Msa1253670-mRNA-1:three_prime_utr;Parent=Msa1253670-mRNA-1
chr8_2 three_prime_UTR 51291720 51291760 51291720 ID=Msa1253670-mRNA-1:three_prime_utr;Parent=Msa1253670-mRNA-1
chr8_2 three_prime_UTR 51291147 51291320 51291147 ID=Msa1253670-mRNA-1:three_prime_utr;Parent=Msa1253670-mRNA-1
chr8_2 three_prime_UTR 51290758 51290793 51290758 ID=Msa1253670-mRNA-1:three_prime_utr;Parent=Msa1253670-mRNA-1
chr8_2 three_prime_UTR 51290598 51290665 51290598 ID=Msa1253670-mRNA-1:three_prime_utr;Parent=Msa1253670-mRNA-1
chr8_2 three_prime_UTR 51290181 51290241 51290181 ID=Msa1253670-mRNA-1:three_prime_utr;Parent=Msa1253670-mRNA-1
chr8_2 three_prime_UTR 51289163 51289766 51289163 ID=Msa1253670-mRNA-1:three_prime_utr;Parent=Msa1253670-mRNA-1
chr8_2 three_prime_UTR 51289111 51289140 51289111 ID=Msa1253670-mRNA-1:three_prime_utr;Parent=Msa1253670-mRNA-1
Gene Sequence

>Msa1253670

ATGTTTATGTTTATGTCGAAGTACAAGCAAAGGTTGTTTTTATGTCTGGTTTTATTTGCATGGTTGTACAATGGAAGTATTGCTATGGCTTCTTCACGGGAAGAAAGTGAAAATTCTAAAGACCTTGATCAGACACCAACATGGGCTGTTGGTTGTGTTTGTACTGTTTTCATCATGGTTTCTATTATTCTTGAAAAAAGTCTTCACAAAATTGGAACGTGGCTGGGAGATAGGCACAAGAGGGCTTTGCTTGAAGCTTTGGAGAAAAATTGA
Protein sequence

>Msa1253670

MFMFMSKYKQRLFLCLVLFAWLYNGSIAMASSREESENSKDLDQTPTWAVGCVCTVFIMVSIILEKSLHKIGTWLGDRHKRALLEALEKN*