Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1200710 | sp|O22757|MLO8_ARATH | 52.313 | 562 | 195 | 11 | 40 | 538 | 39 | 590 | 0.0 | 535 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1200710 | A0A396GSS4 | 81.633 | 588 | 57 | 4 | 3 | 539 | 1 | 588 | 0.0 | 966 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0614350 | Msa1200710 | 0.860209 | 2.422500e-63 | -8.615850e-47 |
| Msa0697570 | Msa1200710 | 0.839259 | 1.763154e-57 | -8.615850e-47 |
| Msa0420210 | Msa1200710 | 0.810172 | 1.315389e-50 | -8.615850e-47 |
| Msa0277410 | Msa1200710 | 0.805889 | 1.073556e-49 | -8.615850e-47 |
| Msa1200710 | Msa1253670 | 0.831350 | 1.754697e-55 | -8.615850e-47 |
| Msa1200710 | Msa1293940 | 0.870422 | 1.476938e-66 | -8.615850e-47 |
| Msa1200710 | Msa1379580 | 0.800205 | 1.607692e-48 | -8.615850e-47 |
| Msa1200710 | Msa1408180 | 0.818515 | 1.883152e-52 | -8.615850e-47 |
| Msa1200710 | Msa1448980 | 0.817336 | 3.477463e-52 | -8.615850e-47 |
| Msa1200710 | Msa1458580 | 0.846332 | 2.321961e-59 | -8.615850e-47 |
| Msa0580920 | Msa1200710 | 0.820519 | 6.573145e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1200710 | MtrunA17_Chr8g0370181 | 81.633 | 588 | 57 | 4 | 3 | 539 | 1 | 588 | 0.0 | 966 |
| Msa1200710 | MtrunA17_Chr5g0407381 | 61.511 | 556 | 149 | 14 | 10 | 511 | 3 | 547 | 0.0 | 634 |
| Msa1200710 | MtrunA17_Chr3g0144201 | 48.084 | 522 | 165 | 7 | 38 | 453 | 9 | 530 | 4.22e-148 | 437 |
| Msa1200710 | MtrunA17_Chr6g0462051 | 40.189 | 530 | 240 | 13 | 34 | 491 | 3 | 527 | 8.01e-124 | 375 |
| Msa1200710 | MtrunA17_Chr3g0144171 | 39.810 | 525 | 245 | 10 | 36 | 495 | 5 | 523 | 9.32e-122 | 369 |
| Msa1200710 | MtrunA17_Chr8g0337941 | 40.693 | 462 | 202 | 8 | 40 | 429 | 12 | 473 | 3.06e-105 | 325 |
| Msa1200710 | MtrunA17_Chr2g0326301 | 38.370 | 503 | 235 | 11 | 40 | 476 | 8 | 501 | 8.26e-105 | 326 |
| Msa1200710 | MtrunA17_Chr3g0145831 | 37.449 | 494 | 242 | 8 | 42 | 468 | 14 | 507 | 3.13e-98 | 307 |
| Msa1200710 | MtrunA17_Chr8g0337931 | 35.758 | 495 | 239 | 9 | 58 | 476 | 15 | 506 | 2.39e-90 | 286 |
| Msa1200710 | MtrunA17_Chr2g0317801 | 37.448 | 478 | 227 | 14 | 34 | 449 | 3 | 470 | 5.08e-90 | 286 |
| Msa1200710 | MtrunA17_Chr4g0040611 | 32.532 | 541 | 282 | 13 | 40 | 520 | 7 | 524 | 3.40e-85 | 275 |
| Msa1200710 | MtrunA17_Chr2g0291441 | 37.875 | 433 | 210 | 9 | 35 | 415 | 3 | 428 | 3.25e-82 | 264 |
| Msa1200710 | MtrunA17_Chr2g0277471 | 32.088 | 455 | 238 | 10 | 37 | 429 | 6 | 451 | 6.02e-62 | 213 |
| Msa1200710 | MtrunA17_Chr5g0405641 | 31.967 | 366 | 196 | 9 | 34 | 353 | 4 | 362 | 1.65e-46 | 167 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1200710 | AT2G17480.1 | 52.313 | 562 | 195 | 11 | 40 | 538 | 39 | 590 | 0.0 | 535 |
| Msa1200710 | AT5G65970.1 | 51.583 | 537 | 188 | 11 | 11 | 488 | 4 | 527 | 1.35e-173 | 502 |
| Msa1200710 | AT2G17430.1 | 50.195 | 512 | 186 | 7 | 30 | 482 | 21 | 522 | 3.03e-169 | 490 |
| Msa1200710 | AT2G33670.1 | 51.247 | 441 | 159 | 7 | 40 | 429 | 15 | 450 | 8.73e-151 | 442 |
| Msa1200710 | AT1G42560.1 | 50.337 | 445 | 167 | 6 | 40 | 430 | 14 | 458 | 3.92e-142 | 418 |
| Msa1200710 | AT5G65970.2 | 53.439 | 378 | 129 | 7 | 11 | 354 | 4 | 368 | 2.18e-135 | 402 |
| Msa1200710 | AT1G61560.1 | 41.434 | 502 | 226 | 10 | 40 | 475 | 8 | 507 | 2.64e-123 | 374 |
| Msa1200710 | AT1G61560.4 | 40.755 | 503 | 228 | 13 | 40 | 475 | 8 | 507 | 2.15e-117 | 359 |
| Msa1200710 | AT2G39200.1 | 37.255 | 561 | 269 | 11 | 40 | 535 | 6 | 548 | 2.64e-116 | 356 |
| Msa1200710 | AT1G42560.2 | 50.139 | 361 | 146 | 4 | 40 | 366 | 14 | 374 | 9.45e-114 | 343 |
| Msa1200710 | AT1G11310.1 | 41.737 | 472 | 200 | 10 | 40 | 438 | 8 | 477 | 3.83e-112 | 345 |
| Msa1200710 | AT1G61560.10 | 43.318 | 434 | 180 | 9 | 38 | 405 | 6 | 439 | 1.59e-111 | 339 |
| Msa1200710 | AT1G61560.7 | 42.683 | 410 | 177 | 8 | 38 | 389 | 6 | 415 | 1.26e-104 | 320 |
| Msa1200710 | AT1G61560.9 | 42.683 | 410 | 177 | 8 | 38 | 389 | 6 | 415 | 1.26e-104 | 320 |
| Msa1200710 | AT3G45290.1 | 35.941 | 473 | 229 | 9 | 31 | 443 | 2 | 460 | 1.03e-100 | 313 |
| Msa1200710 | AT1G61560.6 | 43.947 | 380 | 167 | 7 | 38 | 371 | 6 | 385 | 1.27e-100 | 310 |
| Msa1200710 | AT1G61560.8 | 43.947 | 380 | 167 | 7 | 38 | 371 | 6 | 385 | 1.27e-100 | 310 |
| Msa1200710 | AT1G61560.5 | 43.947 | 380 | 167 | 7 | 38 | 371 | 6 | 385 | 1.27e-100 | 310 |
| Msa1200710 | AT4G02600.2 | 38.544 | 467 | 215 | 9 | 41 | 438 | 9 | 472 | 1.11e-98 | 309 |
| Msa1200710 | AT4G02600.1 | 38.544 | 467 | 215 | 9 | 41 | 438 | 9 | 472 | 1.11e-98 | 309 |
| Msa1200710 | AT2G44110.1 | 36.640 | 494 | 250 | 10 | 42 | 481 | 8 | 492 | 1.98e-98 | 307 |
| Msa1200710 | AT2G44110.2 | 36.566 | 495 | 250 | 10 | 42 | 481 | 8 | 493 | 3.30e-98 | 306 |
| Msa1200710 | AT1G61560.2 | 39.597 | 447 | 202 | 10 | 95 | 475 | 1 | 445 | 1.92e-97 | 305 |
| Msa1200710 | AT1G61560.3 | 39.597 | 447 | 202 | 10 | 95 | 475 | 1 | 445 | 1.92e-97 | 305 |
| Msa1200710 | AT5G53760.2 | 36.138 | 523 | 260 | 13 | 34 | 491 | 10 | 523 | 6.51e-95 | 300 |
| Msa1200710 | AT5G53760.1 | 36.138 | 523 | 260 | 13 | 34 | 491 | 10 | 523 | 6.51e-95 | 300 |
| Msa1200710 | AT1G11310.2 | 40.000 | 415 | 184 | 7 | 38 | 389 | 6 | 418 | 1.89e-93 | 291 |
| Msa1200710 | AT1G26700.1 | 37.060 | 483 | 225 | 13 | 33 | 445 | 2 | 475 | 3.50e-89 | 285 |
| Msa1200710 | AT1G26700.2 | 37.060 | 483 | 225 | 13 | 33 | 445 | 2 | 475 | 3.50e-89 | 285 |
| Msa1200710 | AT1G11310.3 | 39.329 | 417 | 178 | 10 | 95 | 438 | 1 | 415 | 4.66e-85 | 273 |
| Msa1200710 | AT4G24250.1 | 35.914 | 465 | 220 | 9 | 29 | 429 | 1 | 451 | 2.12e-84 | 270 |
| Msa1200710 | AT4G24250.2 | 36.883 | 385 | 185 | 7 | 29 | 369 | 1 | 371 | 2.40e-71 | 234 |
| Msa1200710 | AT1G11000.1 | 29.389 | 524 | 281 | 12 | 37 | 482 | 6 | 518 | 4.42e-62 | 214 |
| Msa1200710 | AT1G11000.3 | 29.389 | 524 | 281 | 12 | 37 | 482 | 6 | 518 | 4.42e-62 | 214 |
| Msa1200710 | AT1G11000.2 | 32.447 | 376 | 200 | 8 | 37 | 369 | 6 | 370 | 2.58e-53 | 187 |
Find 140 sgRNAs with CRISPR-Local
Find 373 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTAATCCGCGCTTCTTTC+CGG | 0.150379 | 8_1:+53545547 | None:intergenic |
| AAGTTTATGGCTTCTGATTA+TGG | 0.189589 | 8_1:+53551516 | None:intergenic |
| TTTGCTTACCATCAATATTT+AGG | 0.200097 | 8_1:+53548044 | None:intergenic |
| CAGGATGGCATGCTATGTTT+TGG | 0.215943 | 8_1:-53547938 | Msa1200710:CDS |
| AAACAAAGAAAATGATGATA+TGG | 0.240891 | 8_1:+53551354 | None:intergenic |
| CATAATTTGCAGTATTCTTT+CGG | 0.257506 | 8_1:-53546854 | Msa1200710:intron |
| TAATTGGTTGCAGATGATTT+TGG | 0.263557 | 8_1:-53547507 | Msa1200710:intron |
| CTTTATGCCATAATCTGTTA+TGG | 0.269563 | 8_1:+53551406 | None:intergenic |
| GCAATAGCCAAAGTAGCTTT+AGG | 0.272741 | 8_1:-53546797 | Msa1200710:CDS |
| ATAATTTGCAGTATTCTTTC+GGG | 0.277858 | 8_1:-53546853 | Msa1200710:intron |
| GCAATCCATTGACAGATATA+AGG | 0.291983 | 8_1:+53549782 | None:intergenic |
| GAGGGCTTTGCTTGAAGCTT+TGG | 0.295661 | 8_1:-53550804 | Msa1200710:CDS |
| GAAAGAAGCGCGGATTAAAT+AGG | 0.298170 | 8_1:-53545544 | Msa1200710:exon |
| AACCAACCCATAACAGATTA+TGG | 0.300463 | 8_1:-53551413 | Msa1200710:five_prime_UTR |
| GCATCGCGGGTACCTCTATA+TGG | 0.300904 | 8_1:+53550397 | None:intergenic |
| ACTTACAATGACAGGAATTA+AGG | 0.307925 | 8_1:+53547911 | None:intergenic |
| TGAAAGTTAAATTTACTTCC+TGG | 0.310672 | 8_1:+53548269 | None:intergenic |
| TTCCTTGTCCTAAATATTGA+TGG | 0.327507 | 8_1:-53548052 | Msa1200710:intron |
| CAGAAATTGGTCTGCCTCAT+TGG | 0.340476 | 8_1:+53550426 | None:intergenic |
| CAATAGCCAAAGTAGCTTTA+GGG | 0.345418 | 8_1:-53546796 | Msa1200710:intron |
| TTTGCTCTAAATCAATGATT+AGG | 0.345810 | 8_1:-53545387 | Msa1200710:three_prime_UTR |
| TTTATGCCATAATCTGTTAT+GGG | 0.356105 | 8_1:+53551407 | None:intergenic |
| GCTTCTTTAGACAGTTCTAT+AGG | 0.358464 | 8_1:-53548425 | Msa1200710:CDS |
| GTTACCTCCTTGCAGTTGTA+AGG | 0.369007 | 8_1:+53550301 | None:intergenic |
| ATACCTGGAACAAGGCAAAA+TGG | 0.373098 | 8_1:+53547339 | None:intergenic |
| ATGGCTTCTGATTATGGTAT+TGG | 0.373472 | 8_1:+53551522 | None:intergenic |
| TATATGGACATGGCAGAAAT+TGG | 0.382142 | 8_1:+53550413 | None:intergenic |
| ATCGGTGGTGCTTCCGTCCC+TGG | 0.383125 | 8_1:+53545825 | None:intergenic |
| TTAGCATCAAATCCAACCTT+TGG | 0.394625 | 8_1:-53551589 | Msa1200710:five_prime_UTR |
| TAAATCCGTTCCGCAGAGTC+AGG | 0.397778 | 8_1:+53548382 | None:intergenic |
| CAAGGGATTCCCCTTGTTCA+AGG | 0.401633 | 8_1:-53547413 | Msa1200710:CDS |
| AACTGTTTGTTGTTGTTCAA+TGG | 0.409950 | 8_1:+53545603 | None:intergenic |
| TCAAGGTGGTTGTTGGAGTC+AGG | 0.410229 | 8_1:-53548214 | Msa1200710:intron |
| GTATTAAATTAAATGAGATT+AGG | 0.412480 | 8_1:+53551480 | None:intergenic |
| ATGTCTTTCTGTCATTTCAA+TGG | 0.415984 | 8_1:+53547445 | None:intergenic |
| AACAAAGAAAATGATGATAT+GGG | 0.416179 | 8_1:+53551355 | None:intergenic |
| TTGTTGACAGTCCTGTCCTT+TGG | 0.417946 | 8_1:-53548090 | Msa1200710:intron |
| GCGCTTCTTTCCGGATGATC+AGG | 0.418756 | 8_1:+53545556 | None:intergenic |
| AACTTACCCTAAAGCTACTT+TGG | 0.426096 | 8_1:+53546790 | None:intergenic |
| GATTCAACAGTGCACTCTAT+TGG | 0.426266 | 8_1:-53545805 | Msa1200710:CDS |
| CAATCCATTGACAGATATAA+GGG | 0.427025 | 8_1:+53549783 | None:intergenic |
| CACAACCACAATACTTGAAA+AGG | 0.433137 | 8_1:+53545348 | None:intergenic |
| TGAGTAACAAGAGCATATAA+TGG | 0.437137 | 8_1:+53546381 | None:intergenic |
| ATCCTTGGAGGATGACTTCA+AGG | 0.437300 | 8_1:-53548231 | Msa1200710:CDS |
| GATGACTTCAAGGTGGTTGT+TGG | 0.437429 | 8_1:-53548221 | Msa1200710:CDS |
| TGTTGACAGTCCTGTCCTTT+GGG | 0.437680 | 8_1:-53548089 | Msa1200710:intron |
| AGAATATGAGGATGTGTAAC+TGG | 0.438582 | 8_1:+53549758 | None:intergenic |
| TAAATTTACTTCCTGGTGAC+AGG | 0.449075 | 8_1:+53548276 | None:intergenic |
| TTGTTCAATGGTTTCTACAA+TGG | 0.452001 | 8_1:+53545615 | None:intergenic |
| GTGTGGCTATGGCTTCTTCA+AGG | 0.452448 | 8_1:-53551245 | Msa1200710:CDS |
| GAAAGTCGAGTGTGCGAACC+AGG | 0.453759 | 8_1:-53545843 | Msa1200710:CDS |
| TGCCATAATCTGTTATGGGT+TGG | 0.454718 | 8_1:+53551411 | None:intergenic |
| AATTGGTCTGCCTCATTGGC+AGG | 0.458206 | 8_1:+53550430 | None:intergenic |
| TATCAGATTGGTAATCATCT+TGG | 0.458388 | 8_1:+53545728 | None:intergenic |
| CCATTGCTGATAAGTGTCAT+TGG | 0.459973 | 8_1:+53545302 | None:intergenic |
| ATTTGTCAAGCCTGATCATC+CGG | 0.461617 | 8_1:-53545566 | Msa1200710:CDS |
| AAAATATATCAAAAGATCCT+TGG | 0.464347 | 8_1:-53548246 | Msa1200710:CDS |
| CAAACGTTAAAAGCAAAGAT+AGG | 0.466412 | 8_1:+53550482 | None:intergenic |
| AATCATTGATTTAGAGCAAA+GGG | 0.466757 | 8_1:+53545390 | None:intergenic |
| ATTATATGCTCTTGTTACTC+AGG | 0.468536 | 8_1:-53546379 | Msa1200710:intron |
| TCTTAGAACACTTTCTGCAT+TGG | 0.472907 | 8_1:-53545421 | Msa1200710:three_prime_UTR |
| AATGCTTCTCGGGAGACTAA+AGG | 0.477912 | 8_1:-53549698 | Msa1200710:intron |
| GTGCTGTCACAATGCTTCTC+GGG | 0.485045 | 8_1:-53549708 | Msa1200710:CDS |
| TGTGTAAAACGGAATCTTGA+AGG | 0.489533 | 8_1:+53548619 | None:intergenic |
| ATGATGAAGAGGAACATCAT+AGG | 0.491993 | 8_1:-53550369 | Msa1200710:CDS |
| ACGATGTTTCATGTGTAAAA+CGG | 0.493532 | 8_1:+53548608 | None:intergenic |
| AGTGCTGTCACAATGCTTCT+CGG | 0.495268 | 8_1:-53549709 | Msa1200710:CDS |
| CAATGGTTTCTACAATGGCT+TGG | 0.496957 | 8_1:+53545620 | None:intergenic |
| AATAGAGTGCACTGTTGAAT+CGG | 0.497770 | 8_1:+53545807 | None:intergenic |
| AACAGAATACTTACAATGAC+AGG | 0.501258 | 8_1:+53547903 | None:intergenic |
| CCCATGTTGGTGTCTGATCA+AGG | 0.506897 | 8_1:+53551199 | None:intergenic |
| GCTTTGGAGAAAGTCAAATC+TGG | 0.508508 | 8_1:-53550788 | Msa1200710:intron |
| GGACTGCTAAGAAGAATATG+AGG | 0.510849 | 8_1:+53549746 | None:intergenic |
| GAAAGACATGCTGTGGTCCA+AGG | 0.518835 | 8_1:-53547431 | Msa1200710:CDS |
| CATGTTTGACGTTGGTGATG+TGG | 0.523212 | 8_1:+53545693 | None:intergenic |
| GTACAATGGAAGTGTGGCTA+TGG | 0.524539 | 8_1:-53551256 | Msa1200710:CDS |
| ATGATTAATGTAAGCTCCAA+AGG | 0.528486 | 8_1:+53551573 | None:intergenic |
| GAGCCCCTTATATCTGTCAA+TGG | 0.528753 | 8_1:-53549787 | Msa1200710:CDS |
| AAGAAGCATGGAGTGAAACT+AGG | 0.529232 | 8_1:-53545865 | Msa1200710:CDS |
| TCAAGTCACATTGTCAAAGA+TGG | 0.529357 | 8_1:-53547468 | Msa1200710:CDS |
| TTAATGTAAGCTCCAAAGGT+TGG | 0.529759 | 8_1:+53551577 | None:intergenic |
| TTACCTCCTTGCAGTTGTAA+GGG | 0.530861 | 8_1:+53550302 | None:intergenic |
| GTGCAGGTCCACCTGTCACC+AGG | 0.534549 | 8_1:-53548287 | Msa1200710:intron |
| TAACAAGAGCATATAATGGA+AGG | 0.535620 | 8_1:+53546385 | None:intergenic |
| GGTATTGGTAGAGTGGTGGC+AGG | 0.537132 | 8_1:+53551537 | None:intergenic |
| TTTCTGCCATGTCCATATAG+AGG | 0.537574 | 8_1:-53550409 | Msa1200710:CDS |
| TTTGTCTGAGCCTTGAACAA+GGG | 0.549775 | 8_1:+53547403 | None:intergenic |
| TTGTCTGAGCCTTGAACAAG+GGG | 0.560509 | 8_1:+53547404 | None:intergenic |
| CTTCTTAGCAGTCCTTCATG+TGG | 0.563288 | 8_1:-53549737 | Msa1200710:CDS |
| CTTGAACAAGGGGAATCCCT+TGG | 0.566793 | 8_1:+53547414 | None:intergenic |
| TCGAGTGTGCGAACCAGGGA+CGG | 0.570121 | 8_1:-53545838 | Msa1200710:CDS |
| ATATATCAAAAGATCCTTGG+AGG | 0.572516 | 8_1:-53548243 | Msa1200710:CDS |
| ATGTTTGACGTTGGTGATGT+GGG | 0.578433 | 8_1:+53545694 | None:intergenic |
| TGATTATGGTATTGGTAGAG+TGG | 0.579585 | 8_1:+53551530 | None:intergenic |
| AAACAACGAATGACGCCCAA+AGG | 0.580314 | 8_1:+53548074 | None:intergenic |
| TGTGGCTATGGCTTCTTCAA+GGG | 0.581261 | 8_1:-53551244 | Msa1200710:CDS |
| ATTTGATGATCAAACATCAA+AGG | 0.581307 | 8_1:-53545917 | Msa1200710:CDS |
| AAAGACATGCTGTGGTCCAA+GGG | 0.583506 | 8_1:-53547430 | Msa1200710:CDS |
| GGCTGGGAGATAGGCACAAG+AGG | 0.584845 | 8_1:-53550823 | Msa1200710:CDS |
| CGGGTACCTCTATATGGACA+TGG | 0.590165 | 8_1:+53550403 | None:intergenic |
| TACCTCCTTGCAGTTGTAAG+GGG | 0.593787 | 8_1:+53550303 | None:intergenic |
| AACGTTTGGACAGAGCTACA+TGG | 0.594119 | 8_1:-53550467 | Msa1200710:CDS |
| ATTTACTTCCTGGTGACAGG+TGG | 0.595068 | 8_1:+53548279 | None:intergenic |
| TAATCATTGATTTAGAGCAA+AGG | 0.597523 | 8_1:+53545389 | None:intergenic |
| TACCATCAATATTTAGGACA+AGG | 0.599960 | 8_1:+53548050 | None:intergenic |
| ATTTGTCTGAGCCTTGAACA+AGG | 0.603739 | 8_1:+53547402 | None:intergenic |
| AACAAGAGCATATAATGGAA+GGG | 0.604802 | 8_1:+53546386 | None:intergenic |
| TTATTTGCATGGTTGTACAA+TGG | 0.606123 | 8_1:-53551270 | Msa1200710:CDS |
| TTATGTCGAAGTACAAGCAA+AGG | 0.607346 | 8_1:-53551311 | Msa1200710:CDS |
| AATATGCATTCCTGCCAATG+AGG | 0.611342 | 8_1:-53550440 | Msa1200710:CDS |
| CACCTTGAAGTCATCCTCCA+AGG | 0.612962 | 8_1:+53548229 | None:intergenic |
| GAGTCAATTCAATATCAGAT+TGG | 0.613623 | 8_1:+53545716 | None:intergenic |
| TTGCAAGCTTGTAATCAGCA+TGG | 0.614046 | 8_1:+53546816 | None:intergenic |
| TGCTACCCCTTACAACTGCA+AGG | 0.621465 | 8_1:-53550308 | Msa1200710:CDS |
| ACAAAGAAAATGATGATATG+GGG | 0.622475 | 8_1:+53551356 | None:intergenic |
| ATCGTAGCGAGTAGAGTGAC+CGG | 0.625216 | 8_1:+53545756 | None:intergenic |
| GACTACCTGACTCTGCGGAA+CGG | 0.625975 | 8_1:-53548387 | Msa1200710:CDS |
| TTCGACATAAACATAAACAT+AGG | 0.629977 | 8_1:+53551324 | None:intergenic |
| CAGACACCAACATGGGCTGT+TGG | 0.631951 | 8_1:-53551192 | Msa1200710:CDS |
| CAGCACTGTATACCACATGA+AGG | 0.635824 | 8_1:+53549725 | None:intergenic |
| AAGTCTTCACAAAATTGGAA+CGG | 0.639934 | 8_1:-53551124 | Msa1200710:intron |
| ACCTTGATCAGACACCAACA+TGG | 0.646672 | 8_1:-53551200 | Msa1200710:CDS |
| AAAATTGAATACCTGGAACA+AGG | 0.654833 | 8_1:+53547331 | None:intergenic |
| TTACACCGTCACAAAACTAC+CGG | 0.655095 | 8_1:-53545775 | Msa1200710:CDS |
| ACTGTTAGCATGTTTGACGT+TGG | 0.657174 | 8_1:+53545685 | None:intergenic |
| ACACAACCAACAGCCCATGT+TGG | 0.661938 | 8_1:+53551186 | None:intergenic |
| ATAAGATGAAGAAGCAACTG+AGG | 0.662862 | 8_1:+53547362 | None:intergenic |
| CCTTGATCAGACACCAACAT+GGG | 0.673354 | 8_1:-53551199 | Msa1200710:CDS |
| AAAGTCGAGTGTGCGAACCA+GGG | 0.675466 | 8_1:-53545842 | Msa1200710:CDS |
| GCTGGGAGATAGGCACAAGA+GGG | 0.683674 | 8_1:-53550822 | Msa1200710:CDS |
| TGATCATCCGGAAAGAAGCG+CGG | 0.695093 | 8_1:-53545554 | Msa1200710:CDS |
| AGAGTGCACTGTTGAATCGG+TGG | 0.700800 | 8_1:+53545810 | None:intergenic |
| AAGCTGACTACCTGACTCTG+CGG | 0.706617 | 8_1:-53548392 | Msa1200710:CDS |
| AATCCATTGACAGATATAAG+GGG | 0.709164 | 8_1:+53549784 | None:intergenic |
| TTATGGTATTGGTAGAGTGG+TGG | 0.715780 | 8_1:+53551533 | None:intergenic |
| AATGACAGAAAGACATGCTG+TGG | 0.718463 | 8_1:-53547438 | Msa1200710:CDS |
| CTTGGAGGATGACTTCAAGG+TGG | 0.722110 | 8_1:-53548228 | Msa1200710:CDS |
| ATGGTTGTACAATGGAAGTG+TGG | 0.723974 | 8_1:-53551262 | Msa1200710:CDS |
| TCTGCGGAACGGATTTATCG+CGG | 0.731044 | 8_1:-53548376 | Msa1200710:intron |
| TACCCCTTACAACTGCAAGG+AGG | 0.768461 | 8_1:-53550305 | Msa1200710:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAAACTTAGTTTAAATTA+AGG | - | chr8_1:53547527-53547546 | Msa1200710:intron | 10.0% |
| !! | AAAAATATTCTCTTATATTT+AGG | + | chr8_1:53548122-53548141 | None:intergenic | 10.0% |
| !!! | TAAGAGAATATTTTTTTTAA+AGG | - | chr8_1:53548127-53548146 | Msa1200710:intron | 10.0% |
| !! | AATAAAATTGGTATAATTAA+TGG | + | chr8_1:53548274-53548293 | None:intergenic | 10.0% |
| !! | AAATAAATTCATAAATCAAA+TGG | + | chr8_1:53549333-53549352 | None:intergenic | 10.0% |
| !!! | TTTTGAATTATTTATAAGTT+TGG | - | chr8_1:53549351-53549370 | Msa1200710:intron | 10.0% |
| !! | AAGTATATAAATCATTTAAT+TGG | - | chr8_1:53549445-53549464 | Msa1200710:intron | 10.0% |
| !!! | TTTTTTATAATAATGACAGT+AGG | - | chr8_1:53545347-53545366 | Msa1200710:intron | 15.0% |
| !! | GTATTAAATTAAATGAGATT+AGG | + | chr8_1:53545491-53545510 | None:intergenic | 15.0% |
| !!! | TTTAGAAATTTTTGAAATTG+AGG | - | chr8_1:53546044-53546063 | Msa1200710:intron | 15.0% |
| !!! | TTAGAAATTTTTGAAATTGA+GGG | - | chr8_1:53546045-53546064 | Msa1200710:intron | 15.0% |
| !! | TATTAGAGAAATATAAAGTA+TGG | + | chr8_1:53546700-53546719 | None:intergenic | 15.0% |
| !!! | ACATTTTTATAGTCATATTT+TGG | - | chr8_1:53546918-53546937 | Msa1200710:intron | 15.0% |
| !! | TAAATGTTAATTCCTATTAT+TGG | - | chr8_1:53547026-53547045 | Msa1200710:intron | 15.0% |
| !! | TAGTTTAAATTAAGGAATAT+TGG | - | chr8_1:53547535-53547554 | Msa1200710:intron | 15.0% |
| !!! | TAAGAAAAGATTATTTTTTC+AGG | + | chr8_1:53548216-53548235 | None:intergenic | 15.0% |
| !!! | AATAATCTTTTCTTATATCT+AGG | - | chr8_1:53548221-53548240 | Msa1200710:CDS | 15.0% |
| !! | TATAATTAATGGTAAATCAA+AGG | + | chr8_1:53548263-53548282 | None:intergenic | 15.0% |
| !! | AAGTTGACAAAAAAAAAAAA+TGG | + | chr8_1:53549286-53549305 | None:intergenic | 15.0% |
| !! | TATTTAAAAAATTGAATACC+TGG | + | chr8_1:53549647-53549666 | None:intergenic | 15.0% |
| !!! | CTTTCTAAAATTATTATTTC+AGG | + | chr8_1:53549787-53549806 | None:intergenic | 15.0% |
| !! | TACAAAAAAAATAACATTTG+AGG | + | chr8_1:53550063-53550082 | None:intergenic | 15.0% |
| !!! | GTTATTTTTTTTGTAGATTA+TGG | - | chr8_1:53550068-53550087 | Msa1200710:intron | 15.0% |
| !!! | TTAATTGTAAAAGAGAATTT+TGG | + | chr8_1:53550208-53550227 | None:intergenic | 15.0% |
| !!! | AATTCTCTTTTACAATTAAA+TGG | - | chr8_1:53550209-53550228 | Msa1200710:intron | 15.0% |
| !! | TAAAGAGAAGAAAAAGTTTA+TGG | + | chr8_1:53545468-53545487 | None:intergenic | 20.0% |
| !!! | TTGGTTTTGAAAATTGAAAA+TGG | + | chr8_1:53545541-53545560 | None:intergenic | 20.0% |
| !! | AACAAAGAAAATGATGATAT+GGG | + | chr8_1:53545616-53545635 | None:intergenic | 20.0% |
| !! | AAACAAAGAAAATGATGATA+TGG | + | chr8_1:53545617-53545636 | None:intergenic | 20.0% |
| !!! | TTTCTTTTGATTTTCAGTTT+AGG | - | chr8_1:53545900-53545919 | Msa1200710:CDS | 20.0% |
| !!! | TTTTTAGTGTTTTTTTCTGT+TGG | - | chr8_1:53545958-53545977 | Msa1200710:intron | 20.0% |
| !!! | TAGAAATTTTTGAAATTGAG+GGG | - | chr8_1:53546046-53546065 | Msa1200710:intron | 20.0% |
| !! | AAAATGTTATTGTTCTTCAA+AGG | + | chr8_1:53546905-53546924 | None:intergenic | 20.0% |
| !! | AGATAAATGAAATTGACAAA+AGG | + | chr8_1:53547088-53547107 | None:intergenic | 20.0% |
| !! | TTATTTCATCACAATATCAA+AGG | - | chr8_1:53547111-53547130 | Msa1200710:intron | 20.0% |
| !! | ATGGAAGATTTATACATTTA+TGG | - | chr8_1:53547413-53547432 | Msa1200710:CDS | 20.0% |
| !! | AAATTCTTGTATTTGTTTGT+TGG | - | chr8_1:53547464-53547483 | Msa1200710:CDS | 20.0% |
| !! | AAAATTACTAATAATGCACT+CGG | + | chr8_1:53547629-53547648 | None:intergenic | 20.0% |
| !! | TTCCAATTTCAAATTATTAG+TGG | - | chr8_1:53547747-53547766 | Msa1200710:intron | 20.0% |
| !! | AAAATATATCAAAAGATCCT+TGG | - | chr8_1:53548722-53548741 | Msa1200710:intron | 20.0% |
| !!! | ATTTTTTTTGTAGATTATGG+TGG | - | chr8_1:53550071-53550090 | Msa1200710:intron | 20.0% |
| !! | TCAAATAAATCAATCACAAT+AGG | + | chr8_1:53550332-53550351 | None:intergenic | 20.0% |
| !!! | TTCTTTGATTGAAGTATTTT+TGG | - | chr8_1:53550669-53550688 | Msa1200710:intron | 20.0% |
| !! | GTAAAATTTGGACTTAATTA+TGG | + | chr8_1:53550894-53550913 | None:intergenic | 20.0% |
| !! | TGTATAAATGATAGTAAATG+AGG | + | chr8_1:53550972-53550991 | None:intergenic | 20.0% |
| !! | TTTATACATACAAGTTACTA+AGG | - | chr8_1:53550984-53551003 | Msa1200710:intron | 20.0% |
| ! | TTTATGCCATAATCTGTTAT+GGG | + | chr8_1:53545564-53545583 | None:intergenic | 25.0% |
| ! | ACAAAGAAAATGATGATATG+GGG | + | chr8_1:53545615-53545634 | None:intergenic | 25.0% |
| ! | TTCGACATAAACATAAACAT+AGG | + | chr8_1:53545647-53545666 | None:intergenic | 25.0% |
| ! | GAAAAAAGTCTTCACAAAAT+TGG | - | chr8_1:53545839-53545858 | Msa1200710:CDS | 25.0% |
| !!! | TTGATTTTCAGTTTAGGTTA+AGG | - | chr8_1:53545906-53545925 | Msa1200710:CDS | 25.0% |
| !!! | GTGTTTTGTATTTTTTTCAG+TGG | - | chr8_1:53546124-53546143 | Msa1200710:intron | 25.0% |
| !!! | CTTTAAAATAAAGTGTTGGT+TGG | + | chr8_1:53546252-53546271 | None:intergenic | 25.0% |
| !!! | TCGTCTTTAAAATAAAGTGT+TGG | + | chr8_1:53546256-53546275 | None:intergenic | 25.0% |
| !!! | CTTTATTTTAAAGACGAGTT+TGG | - | chr8_1:53546259-53546278 | Msa1200710:intron | 25.0% |
| ! | AAAGGAAATAGAAATTGTAG+AGG | + | chr8_1:53547070-53547089 | None:intergenic | 25.0% |
| !!! | ACTTTTGTTTTTTCTTTCTG+TGG | - | chr8_1:53547379-53547398 | Msa1200710:CDS | 25.0% |
| ! | CAATAAGTTATGTCTTTAGA+TGG | - | chr8_1:53547437-53547456 | Msa1200710:CDS | 25.0% |
| !! | CACCACTAATAATTTGAAAT+TGG | + | chr8_1:53547752-53547771 | None:intergenic | 25.0% |
| !! | ATTTCTTTTATGTAGATACG+AGG | - | chr8_1:53547981-53548000 | Msa1200710:intron | 25.0% |
| ! | GCAGCATTTGAAAATAAAAT+TGG | + | chr8_1:53548286-53548305 | None:intergenic | 25.0% |
| ! | CTTACTATATAGAAGAAGAT+TGG | + | chr8_1:53548421-53548440 | None:intergenic | 25.0% |
| !!! | ACTCTGAAATTTGCAATAAA+TGG | + | chr8_1:53548522-53548541 | None:intergenic | 25.0% |
| ! | TGAAAGTTAAATTTACTTCC+TGG | + | chr8_1:53548702-53548721 | None:intergenic | 25.0% |
| ! | TTTGCTTACCATCAATATTT+AGG | + | chr8_1:53548927-53548946 | None:intergenic | 25.0% |
| ! | AATTCGATAGGAAATAATTG+AGG | + | chr8_1:53548963-53548982 | None:intergenic | 25.0% |
| !!! | GTTAATCCGTTTTATTTTTC+AGG | - | chr8_1:53549011-53549030 | Msa1200710:intron | 25.0% |
| ! | TCTGTACAAAATTTGAAGAT+TGG | - | chr8_1:53549089-53549108 | Msa1200710:intron | 25.0% |
| ! | ATGAATCTTATCTTGAATTC+TGG | - | chr8_1:53549217-53549236 | Msa1200710:intron | 25.0% |
| !!! | TCAGACAAATATTTTTGGTT+TGG | - | chr8_1:53549579-53549598 | Msa1200710:intron | 25.0% |
| !!! | CAGACAAATATTTTTGGTTT+GGG | - | chr8_1:53549580-53549599 | Msa1200710:intron | 25.0% |
| ! | CTAATGAGAGAAAATTACTT+TGG | - | chr8_1:53549915-53549934 | Msa1200710:intron | 25.0% |
| ! | TTCAGATAACATATTTCTTG+TGG | - | chr8_1:53550007-53550026 | Msa1200710:intron | 25.0% |
| ! | TAACATATTTCTTGTGGATA+TGG | - | chr8_1:53550013-53550032 | Msa1200710:intron | 25.0% |
| ! | AACATATTTCTTGTGGATAT+GGG | - | chr8_1:53550014-53550033 | Msa1200710:intron | 25.0% |
| !! | CATAATTTGCAGTATTCTTT+CGG | - | chr8_1:53550114-53550133 | Msa1200710:intron | 25.0% |
| !! | ATAATTTGCAGTATTCTTTC+GGG | - | chr8_1:53550115-53550134 | Msa1200710:intron | 25.0% |
| !! | TAAGTATGAAATGCATTTTG+AGG | + | chr8_1:53550241-53550260 | None:intergenic | 25.0% |
| !! | GTTCTTTTCATAAGTTTTCT+TGG | + | chr8_1:53550446-53550465 | None:intergenic | 25.0% |
| ! | ATAACTTATATGAGAACAGT+TGG | - | chr8_1:53550468-53550487 | Msa1200710:CDS | 25.0% |
| ! | GAATTCATCAGATTACTTTA+TGG | + | chr8_1:53550514-53550533 | None:intergenic | 25.0% |
| ! | TCATCAAACAATACAAAATC+AGG | + | chr8_1:53550634-53550653 | None:intergenic | 25.0% |
| !! | TTGTATTGTTTGATGATTAG+AGG | - | chr8_1:53550638-53550657 | Msa1200710:intron | 25.0% |
| ! | AAATTCAGTATTATTCTCGA+TGG | - | chr8_1:53550777-53550796 | Msa1200710:intron | 25.0% |
| !! | ATTAAGTCCAAATTTTACGA+TGG | - | chr8_1:53550896-53550915 | Msa1200710:intron | 25.0% |
| ! | ATCAATACCATCGTAAAATT+TGG | + | chr8_1:53550906-53550925 | None:intergenic | 25.0% |
| !! | ATTTGATGATCAAACATCAA+AGG | - | chr8_1:53551051-53551070 | Msa1200710:intron | 25.0% |
| !!! | AATCATTGATTTAGAGCAAA+GGG | + | chr8_1:53551581-53551600 | None:intergenic | 25.0% |
| !!! | TAATCATTGATTTAGAGCAA+AGG | + | chr8_1:53551582-53551601 | None:intergenic | 25.0% |
| !! | TTTGCTCTAAATCAATGATT+AGG | - | chr8_1:53551581-53551600 | Msa1200710:five_prime_UTR | 25.0% |
| ATGATTAATGTAAGCTCCAA+AGG | + | chr8_1:53545398-53545417 | None:intergenic | 30.0% | |
| AAGTTTATGGCTTCTGATTA+TGG | + | chr8_1:53545455-53545474 | None:intergenic | 30.0% | |
| CTTTATGCCATAATCTGTTA+TGG | + | chr8_1:53545565-53545584 | None:intergenic | 30.0% | |
| !!! | TATGTCTGGTTTTATTTGCA+TGG | - | chr8_1:53545687-53545706 | Msa1200710:CDS | 30.0% |
| TTATTTGCATGGTTGTACAA+TGG | - | chr8_1:53545698-53545717 | Msa1200710:CDS | 30.0% | |
| ! | TGTTTGTACTGTTTTCATCA+TGG | - | chr8_1:53545802-53545821 | Msa1200710:CDS | 30.0% |
| AAGTCTTCACAAAATTGGAA+CGG | - | chr8_1:53545844-53545863 | Msa1200710:CDS | 30.0% | |
| !! | TTTTCAGTTTAGGTTAAGGT+TGG | - | chr8_1:53545910-53545929 | Msa1200710:CDS | 30.0% |
| TTGAAATTGAGGGGTTAATT+TGG | - | chr8_1:53546055-53546074 | Msa1200710:intron | 30.0% | |
| !!! | TTTGTATTTTTTTCAGTGGC+TGG | - | chr8_1:53546128-53546147 | Msa1200710:intron | 30.0% |
| !!! | TTGTATTTTTTTCAGTGGCT+GGG | - | chr8_1:53546129-53546148 | Msa1200710:intron | 30.0% |
| !! | ATCTGGTAAGATTTTAGTCA+AGG | - | chr8_1:53546197-53546216 | Msa1200710:intron | 30.0% |
| !! | TCTGGTAAGATTTTAGTCAA+GGG | - | chr8_1:53546198-53546217 | Msa1200710:intron | 30.0% |
| !! | GTTGCAGAATTGATGATTTT+AGG | - | chr8_1:53546460-53546479 | Msa1200710:intron | 30.0% |
| CAAACGTTAAAAGCAAAGAT+AGG | + | chr8_1:53546489-53546508 | None:intergenic | 30.0% | |
| !! | CTATCTTTGCTTTTAACGTT+TGG | - | chr8_1:53546487-53546506 | Msa1200710:intron | 30.0% |
| GTGTAATGAGTAATCTAAGT+TGG | - | chr8_1:53546765-53546784 | Msa1200710:intron | 30.0% | |
| ! | GCAAAGTGCTATAAAAGAAT+GGG | + | chr8_1:53546875-53546894 | None:intergenic | 30.0% |
| ! | TGCAAAGTGCTATAAAAGAA+TGG | + | chr8_1:53546876-53546895 | None:intergenic | 30.0% |
| ! | ATTCTTTTATAGCACTTTGC+AGG | - | chr8_1:53546875-53546894 | Msa1200710:intron | 30.0% |
| GTTAATTCCTATTATTGGTC+AGG | - | chr8_1:53547031-53547050 | Msa1200710:intron | 30.0% | |
| ATTGAAACCTGACCAATAAT+AGG | + | chr8_1:53547041-53547060 | None:intergenic | 30.0% | |
| AATCCATTGACAGATATAAG+GGG | + | chr8_1:53547187-53547206 | None:intergenic | 30.0% | |
| CAATCCATTGACAGATATAA+GGG | + | chr8_1:53547188-53547207 | None:intergenic | 30.0% | |
| !! | ATTTTTACTGTCAAGCATTG+AGG | + | chr8_1:53547814-53547833 | None:intergenic | 30.0% |
| ACTCTTAGTACAAGTATAAG+TGG | - | chr8_1:53547844-53547863 | Msa1200710:intron | 30.0% | |
| TATAAGTGGTAACTAGAACA+TGG | - | chr8_1:53547858-53547877 | Msa1200710:intron | 30.0% | |
| CCTAACAAGTTAAACATTTG+TGG | + | chr8_1:53547906-53547925 | None:intergenic | 30.0% | |
| !! | CCACAAATGTTTAACTTGTT+AGG | - | chr8_1:53547903-53547922 | Msa1200710:intron | 30.0% |
| TCAAGAGTTAGTAACTTAGT+TGG | - | chr8_1:53547949-53547968 | Msa1200710:intron | 30.0% | |
| AAAGATCAATGTCATACCAT+TGG | + | chr8_1:53548054-53548073 | None:intergenic | 30.0% | |
| !! | TCTTTTCTTATATCTAGGAC+TGG | - | chr8_1:53548226-53548245 | Msa1200710:CDS | 30.0% |
| ACGATGTTTCATGTGTAAAA+CGG | + | chr8_1:53548363-53548382 | None:intergenic | 30.0% | |
| CAATTTATCTTGCTTCTTTG+AGG | - | chr8_1:53548477-53548496 | Msa1200710:intron | 30.0% | |
| TTTGCAATAAATGGAAGAGA+TGG | + | chr8_1:53548513-53548532 | None:intergenic | 30.0% | |
| ATATATCAAAAGATCCTTGG+AGG | - | chr8_1:53548725-53548744 | Msa1200710:intron | 30.0% | |
| TTCCTTGTCCTAAATATTGA+TGG | - | chr8_1:53548916-53548935 | Msa1200710:intron | 30.0% | |
| ! | TACCATCAATATTTAGGACA+AGG | + | chr8_1:53548921-53548940 | None:intergenic | 30.0% |
| TGCAGAAAAGTAAATTCGAT+AGG | + | chr8_1:53548975-53548994 | None:intergenic | 30.0% | |
| TCTGCAGTTGAATATTCAAT+TGG | - | chr8_1:53548989-53549008 | Msa1200710:intron | 30.0% | |
| !!! | ATCCGTTTTATTTTTCAGGA+TGG | - | chr8_1:53549015-53549034 | Msa1200710:intron | 30.0% |
| TGCCATCCTGAAAAATAAAA+CGG | + | chr8_1:53549020-53549039 | None:intergenic | 30.0% | |
| ACTTACAATGACAGGAATTA+AGG | + | chr8_1:53549060-53549079 | None:intergenic | 30.0% | |
| AACAGAATACTTACAATGAC+AGG | + | chr8_1:53549068-53549087 | None:intergenic | 30.0% | |
| TCTTTAGTGTGCATCTATAT+TGG | - | chr8_1:53549192-53549211 | Msa1200710:intron | 30.0% | |
| ! | GAATCTCAATTTGATAACCA+TGG | - | chr8_1:53549412-53549431 | Msa1200710:intron | 30.0% |
| ! | TCAATTTGATAACCATGGTT+GGG | - | chr8_1:53549417-53549436 | Msa1200710:intron | 30.0% |
| ! | TAATTGGTTGCAGATGATTT+TGG | - | chr8_1:53549461-53549480 | Msa1200710:intron | 30.0% |
| ! | ATGTCTTTCTGTCATTTCAA+TGG | + | chr8_1:53549526-53549545 | None:intergenic | 30.0% |
| ! | AAGGCTCAGACAAATATTTT+TGG | - | chr8_1:53549574-53549593 | Msa1200710:intron | 30.0% |
| AAAATTGAATACCTGGAACA+AGG | + | chr8_1:53549640-53549659 | None:intergenic | 30.0% | |
| ATGAGAGAAAATTACTTTGG+AGG | - | chr8_1:53549918-53549937 | Msa1200710:intron | 30.0% | |
| ! | TAACATTTGAGGTGTAAAGA+TGG | + | chr8_1:53550052-53550071 | None:intergenic | 30.0% |
| TTCATCAGATTACTTTATGG+TGG | + | chr8_1:53550511-53550530 | None:intergenic | 30.0% | |
| TAATCTGATGAATTCTCATG+TGG | - | chr8_1:53550519-53550538 | Msa1200710:intron | 30.0% | |
| ! | AACAAGAGCATATAATGGAA+GGG | + | chr8_1:53550585-53550604 | None:intergenic | 30.0% |
| ! | TAACAAGAGCATATAATGGA+AGG | + | chr8_1:53550586-53550605 | None:intergenic | 30.0% |
| ! | TGAGTAACAAGAGCATATAA+TGG | + | chr8_1:53550590-53550609 | None:intergenic | 30.0% |
| ATTATATGCTCTTGTTACTC+AGG | - | chr8_1:53550589-53550608 | Msa1200710:intron | 30.0% | |
| ACTAAGAATGTGTTGGATTT+AGG | - | chr8_1:53550801-53550820 | Msa1200710:CDS | 30.0% | |
| !! | TGGTATTGATTATTCCTCAA+TGG | - | chr8_1:53550916-53550935 | Msa1200710:intron | 30.0% |
| TACATACAAGTTACTAAGGT+TGG | - | chr8_1:53550988-53551007 | Msa1200710:intron | 30.0% | |
| ! | TTGGTAAAACTTTTGCAGAT+GGG | - | chr8_1:53551007-53551026 | Msa1200710:intron | 30.0% |
| !! | CATCAAAGGCGTTAAAAAAA+TGG | - | chr8_1:53551065-53551084 | Msa1200710:intron | 30.0% |
| AATAGTGTGAAAAAGAAGCA+TGG | - | chr8_1:53551091-53551110 | Msa1200710:intron | 30.0% | |
| ! | TATCAGATTGGTAATCATCT+TGG | + | chr8_1:53551243-53551262 | None:intergenic | 30.0% |
| GAGTCAATTCAATATCAGAT+TGG | + | chr8_1:53551255-53551274 | None:intergenic | 30.0% | |
| TTGTTCAATGGTTTCTACAA+TGG | + | chr8_1:53551356-53551375 | None:intergenic | 30.0% | |
| !! | AACTGTTTGTTGTTGTTCAA+TGG | + | chr8_1:53551368-53551387 | None:intergenic | 30.0% |
| !!! | TTGTACCTTTTCAAGTATTG+TGG | - | chr8_1:53551615-53551634 | Msa1200710:five_prime_UTR | 30.0% |
| TTAGCATCAAATCCAACCTT+TGG | - | chr8_1:53545379-53545398 | Msa1200710:three_prime_UTR | 35.0% | |
| TTAATGTAAGCTCCAAAGGT+TGG | + | chr8_1:53545394-53545413 | None:intergenic | 35.0% | |
| !! | TGATTATGGTATTGGTAGAG+TGG | + | chr8_1:53545441-53545460 | None:intergenic | 35.0% |
| ATGGCTTCTGATTATGGTAT+TGG | + | chr8_1:53545449-53545468 | None:intergenic | 35.0% | |
| AACCAACCCATAACAGATTA+TGG | - | chr8_1:53545555-53545574 | Msa1200710:CDS | 35.0% | |
| TTATGTCGAAGTACAAGCAA+AGG | - | chr8_1:53545657-53545676 | Msa1200710:CDS | 35.0% | |
| !!! | GCAAAGGTTGTTTTTATGTC+TGG | - | chr8_1:53545673-53545692 | Msa1200710:CDS | 35.0% |
| TATATGGACATGGCAGAAAT+TGG | + | chr8_1:53546558-53546577 | None:intergenic | 35.0% | |
| !!! | TTCATCATTTTTTGCATCGC+GGG | + | chr8_1:53546587-53546606 | None:intergenic | 35.0% |
| !!! | CTTCATCATTTTTTGCATCG+CGG | + | chr8_1:53546588-53546607 | None:intergenic | 35.0% |
| CGATGCAAAAAATGATGAAG+AGG | - | chr8_1:53546588-53546607 | Msa1200710:intron | 35.0% | |
| ATGATGAAGAGGAACATCAT+AGG | - | chr8_1:53546599-53546618 | Msa1200710:intron | 35.0% | |
| CTACACACATTCATTGATCT+CGG | + | chr8_1:53546809-53546828 | None:intergenic | 35.0% | |
| ! | CGTGTGCATTTTCTAATGTA+GGG | - | chr8_1:53546829-53546848 | Msa1200710:CDS | 35.0% |
| !! | TAAAAGAATGGGAGTGCTAA+TGG | + | chr8_1:53546864-53546883 | None:intergenic | 35.0% |
| GCAATCCATTGACAGATATA+AGG | + | chr8_1:53547189-53547208 | None:intergenic | 35.0% | |
| AGAATATGAGGATGTGTAAC+TGG | + | chr8_1:53547213-53547232 | None:intergenic | 35.0% | |
| ! | AGCTCAATCTATGCATTTTG+AGG | - | chr8_1:53547341-53547360 | Msa1200710:intron | 35.0% |
| !! | GCATTTTGAGGATACTGATT+TGG | - | chr8_1:53547353-53547372 | Msa1200710:CDS | 35.0% |
| TTCTGTGGAAAAATGATGCA+TGG | - | chr8_1:53547394-53547413 | Msa1200710:CDS | 35.0% | |
| CATGTGGAGGAAATACTAAT+AGG | + | chr8_1:53547574-53547593 | None:intergenic | 35.0% | |
| CTATTAGTATTTCCTCCACA+TGG | - | chr8_1:53547572-53547591 | Msa1200710:intron | 35.0% | |
| TTGAATGTAAGCACAAGTGT+TGG | + | chr8_1:53547723-53547742 | None:intergenic | 35.0% | |
| ! | TGTTAATGTCAGTGTTGTTC+CGG | - | chr8_1:53547778-53547797 | Msa1200710:intron | 35.0% |
| !! | AGTAACTTAGTTGGTGATTG+AGG | - | chr8_1:53547958-53547977 | Msa1200710:intron | 35.0% |
| ! | CTTTTATGTAGATACGAGGA+TGG | - | chr8_1:53547985-53548004 | Msa1200710:intron | 35.0% |
| ATGAAAGCTATTACTCTCTG+CGG | - | chr8_1:53548095-53548114 | Msa1200710:intron | 35.0% | |
| ! | TTTCTTATATCTAGGACTGG+AGG | - | chr8_1:53548229-53548248 | Msa1200710:CDS | 35.0% |
| ! | TTCTTATATCTAGGACTGGA+GGG | - | chr8_1:53548230-53548249 | Msa1200710:CDS | 35.0% |
| ACATGATTAATGCACAACAG+AGG | + | chr8_1:53548325-53548344 | None:intergenic | 35.0% | |
| TGTGTAAAACGGAATCTTGA+AGG | + | chr8_1:53548352-53548371 | None:intergenic | 35.0% | |
| !! | TGGAATTTTAGTCCAACAAG+TGG | + | chr8_1:53548401-53548420 | None:intergenic | 35.0% |
| GCTTCTTTAGACAGTTCTAT+AGG | - | chr8_1:53548543-53548562 | Msa1200710:intron | 35.0% | |
| TAAATTTACTTCCTGGTGAC+AGG | + | chr8_1:53548695-53548714 | None:intergenic | 35.0% | |
| ! | TTGAAGATTGGTTGAGATGA+AGG | - | chr8_1:53549101-53549120 | Msa1200710:intron | 35.0% |
| ! | TGAAGATTGGTTGAGATGAA+GGG | - | chr8_1:53549102-53549121 | Msa1200710:intron | 35.0% |
| ! | CTCAATTTGATAACCATGGT+TGG | - | chr8_1:53549416-53549435 | Msa1200710:intron | 35.0% |
| TATACTTGTAATCCCAACCA+TGG | + | chr8_1:53549432-53549451 | None:intergenic | 35.0% | |
| TCAAGTCACATTGTCAAAGA+TGG | - | chr8_1:53549500-53549519 | Msa1200710:intron | 35.0% | |
| ATAAGATGAAGAAGCAACTG+AGG | + | chr8_1:53549609-53549628 | None:intergenic | 35.0% | |
| TTGAATGTAACCACATGTGT+CGG | - | chr8_1:53549815-53549834 | Msa1200710:intron | 35.0% | |
| ! | CAATAGCCAAAGTAGCTTTA+GGG | - | chr8_1:53550172-53550191 | Msa1200710:intron | 35.0% |
| AACTTACCCTAAAGCTACTT+TGG | + | chr8_1:53550181-53550200 | None:intergenic | 35.0% | |
| TATGAGCATGTAGTTGTTTG+AGG | - | chr8_1:53550279-53550298 | Msa1200710:intron | 35.0% | |
| ! | AAGTTTTCTTGGAGAGCTTA+TGG | + | chr8_1:53550435-53550454 | None:intergenic | 35.0% |
| !!! | GAATTCTCATGTGGTTTTGA+AGG | - | chr8_1:53550528-53550547 | Msa1200710:intron | 35.0% |
| !!! | CATGTGGTTTTGAAGGTTTT+TGG | - | chr8_1:53550535-53550554 | Msa1200710:intron | 35.0% |
| CACGTCATGTTTATCCTAAT+AGG | - | chr8_1:53550713-53550732 | Msa1200710:intron | 35.0% | |
| GTTTATCCTAATAGGACAGA+AGG | - | chr8_1:53550721-53550740 | Msa1200710:intron | 35.0% | |
| ! | ACAAAGCATTATGGAATCAG+AGG | + | chr8_1:53550830-53550849 | None:intergenic | 35.0% |
| ! | TGAGGACTAACAAAGCATTA+TGG | + | chr8_1:53550839-53550858 | None:intergenic | 35.0% |
| TTAGTCCTCATCTTATAACC+TGG | - | chr8_1:53550849-53550868 | Msa1200710:intron | 35.0% | |
| ACAAACCAGGTTATAAGATG+AGG | + | chr8_1:53550857-53550876 | None:intergenic | 35.0% | |
| ! | CATCTTATAACCTGGTTTGT+AGG | - | chr8_1:53550857-53550876 | Msa1200710:intron | 35.0% |
| !! | GTTGGTAAAACTTTTGCAGA+TGG | - | chr8_1:53551006-53551025 | Msa1200710:intron | 35.0% |
| AATAGAGTGCACTGTTGAAT+CGG | + | chr8_1:53551164-53551183 | None:intergenic | 35.0% | |
| TCTTAGAACACTTTCTGCAT+TGG | - | chr8_1:53551547-53551566 | Msa1200710:five_prime_UTR | 35.0% | |
| CACAACCACAATACTTGAAA+AGG | + | chr8_1:53551623-53551642 | None:intergenic | 35.0% | |
| !! | TTATGGTATTGGTAGAGTGG+TGG | + | chr8_1:53545438-53545457 | None:intergenic | 40.0% |
| TGCCATAATCTGTTATGGGT+TGG | + | chr8_1:53545560-53545579 | None:intergenic | 40.0% | |
| ATGGTTGTACAATGGAAGTG+TGG | - | chr8_1:53545706-53545725 | Msa1200710:CDS | 40.0% | |
| !! | GCTTTGGAGAAAGTCAAATC+TGG | - | chr8_1:53546180-53546199 | Msa1200710:intron | 40.0% |
| CTAACACGTGTTAGTGTTGT+TGG | - | chr8_1:53546285-53546304 | Msa1200710:intron | 40.0% | |
| AATATGCATTCCTGCCAATG+AGG | - | chr8_1:53546528-53546547 | Msa1200710:intron | 40.0% | |
| TTTCTGCCATGTCCATATAG+AGG | - | chr8_1:53546559-53546578 | Msa1200710:intron | 40.0% | |
| TTACCTCCTTGCAGTTGTAA+GGG | + | chr8_1:53546669-53546688 | None:intergenic | 40.0% | |
| !! | CTCGGTTACTGATTTGAGAT+CGG | + | chr8_1:53546791-53546810 | None:intergenic | 40.0% |
| ! | GCGTGTGCATTTTCTAATGT+AGG | - | chr8_1:53546828-53546847 | Msa1200710:CDS | 40.0% |
| CCTTCTGCTTTCATTCTTAG+CGG | - | chr8_1:53547136-53547155 | Msa1200710:intron | 40.0% | |
| ! | TAGCGGCAAATCTTTGTTGT+AGG | - | chr8_1:53547153-53547172 | Msa1200710:intron | 40.0% |
| ! | AGCGGCAAATCTTTGTTGTA+GGG | - | chr8_1:53547154-53547173 | Msa1200710:intron | 40.0% |
| GGACTGCTAAGAAGAATATG+AGG | + | chr8_1:53547225-53547244 | None:intergenic | 40.0% | |
| ! | GTGCGTCTTTCTTTTTGTGT+TGG | - | chr8_1:53547296-53547315 | Msa1200710:intron | 40.0% |
| TTAGTATTTCCTCCACATGG+AGG | - | chr8_1:53547575-53547594 | Msa1200710:intron | 40.0% | |
| TAGTATTTCCTCCACATGGA+GGG | - | chr8_1:53547576-53547595 | Msa1200710:intron | 40.0% | |
| AGGAAGAGAGGAGATGAAAA+AGG | - | chr8_1:53547600-53547619 | Msa1200710:intron | 40.0% | |
| GGAAGAGAGGAGATGAAAAA+GGG | - | chr8_1:53547601-53547620 | Msa1200710:intron | 40.0% | |
| TATGTAGATACGAGGATGGA+AGG | - | chr8_1:53547989-53548008 | Msa1200710:intron | 40.0% | |
| ! | TTAGACAACATGCCACTTGT+TGG | - | chr8_1:53548386-53548405 | Msa1200710:CDS | 40.0% |
| AGCATGCGTACTAGTAAAGT+TGG | + | chr8_1:53548445-53548464 | None:intergenic | 40.0% | |
| !! | TAGTACGCATGCTGTTTCAT+AGG | - | chr8_1:53548452-53548471 | Msa1200710:intron | 40.0% |
| CAAGATGAACGGTCAAGTAA+CGG | + | chr8_1:53548662-53548681 | None:intergenic | 40.0% | |
| ! | AGGATGGCATGCTATGTTTT+GGG | - | chr8_1:53549031-53549050 | Msa1200710:intron | 40.0% |
| TCGCTTGTATCAGAAGCTAT+TGG | + | chr8_1:53549130-53549149 | None:intergenic | 40.0% | |
| TGAATCACTACCACCTAAAC+TGG | - | chr8_1:53549250-53549269 | Msa1200710:intron | 40.0% | |
| GAATCACTACCACCTAAACT+GGG | - | chr8_1:53549251-53549270 | Msa1200710:intron | 40.0% | |
| !!! | TTGCAGATGATTTTGGCTGT+TGG | - | chr8_1:53549468-53549487 | Msa1200710:intron | 40.0% |
| AATGACAGAAAGACATGCTG+TGG | - | chr8_1:53549530-53549549 | Msa1200710:intron | 40.0% | |
| TTTGTCTGAGCCTTGAACAA+GGG | + | chr8_1:53549568-53549587 | None:intergenic | 40.0% | |
| ATTTGTCTGAGCCTTGAACA+AGG | + | chr8_1:53549569-53549588 | None:intergenic | 40.0% | |
| !! | TATCCATTTTGCCTTGTTCC+AGG | - | chr8_1:53549626-53549645 | Msa1200710:intron | 40.0% |
| ATACCTGGAACAAGGCAAAA+TGG | + | chr8_1:53549632-53549651 | None:intergenic | 40.0% | |
| TTATTGAACACCGACACATG+TGG | + | chr8_1:53549828-53549847 | None:intergenic | 40.0% | |
| ! | CATGTGTCGGTGTTCAATAA+CGG | - | chr8_1:53549828-53549847 | Msa1200710:intron | 40.0% |
| TGTTCAATAACGGCACATGT+CGG | - | chr8_1:53549838-53549857 | Msa1200710:intron | 40.0% | |
| GGACATGCAAGTAAAGAAGT+AGG | - | chr8_1:53549866-53549885 | Msa1200710:intron | 40.0% | |
| ATTAGTGCAACGACTGAACT+AGG | + | chr8_1:53549900-53549919 | None:intergenic | 40.0% | |
| TTGCAAGCTTGTAATCAGCA+TGG | + | chr8_1:53550155-53550174 | None:intergenic | 40.0% | |
| GCAATAGCCAAAGTAGCTTT+AGG | - | chr8_1:53550171-53550190 | Msa1200710:intron | 40.0% | |
| ! | GTAGTTGTTTGAGGCTGTAT+CGG | - | chr8_1:53550288-53550307 | Msa1200710:intron | 40.0% |
| AATAGGCAGTAGAGACTAGA+AGG | + | chr8_1:53550315-53550334 | None:intergenic | 40.0% | |
| ! | AACATGACGTGTGTTGATCT+CGG | + | chr8_1:53550704-53550723 | None:intergenic | 40.0% |
| ACTAGTCCTTCTGTCCTATT+AGG | + | chr8_1:53550730-53550749 | None:intergenic | 40.0% | |
| ! | AATAGGACAGAAGGACTAGT+AGG | - | chr8_1:53550730-53550749 | Msa1200710:intron | 40.0% |
| ! | AAGAAGCATGGAGTGAAACT+AGG | - | chr8_1:53551103-53551122 | Msa1200710:intron | 40.0% |
| GATTCAACAGTGCACTCTAT+TGG | - | chr8_1:53551163-53551182 | Msa1200710:CDS | 40.0% | |
| TTACACCGTCACAAAACTAC+CGG | - | chr8_1:53551193-53551212 | Msa1200710:CDS | 40.0% | |
| !! | ATGTTTGACGTTGGTGATGT+GGG | + | chr8_1:53551277-53551296 | None:intergenic | 40.0% |
| ACTGTTAGCATGTTTGACGT+TGG | + | chr8_1:53551286-53551305 | None:intergenic | 40.0% | |
| CAATGGTTTCTACAATGGCT+TGG | + | chr8_1:53551351-53551370 | None:intergenic | 40.0% | |
| ATTTGTCAAGCCTGATCATC+CGG | - | chr8_1:53551402-53551421 | Msa1200710:five_prime_UTR | 40.0% | |
| ATTTAATCCGCGCTTCTTTC+CGG | + | chr8_1:53551424-53551443 | None:intergenic | 40.0% | |
| ! | GAAAGAAGCGCGGATTAAAT+AGG | - | chr8_1:53551424-53551443 | Msa1200710:five_prime_UTR | 40.0% |
| ! | GTACAATGGAAGTGTGGCTA+TGG | - | chr8_1:53545712-53545731 | Msa1200710:CDS | 45.0% |
| TGTGGCTATGGCTTCTTCAA+GGG | - | chr8_1:53545724-53545743 | Msa1200710:CDS | 45.0% | |
| ACCTTGATCAGACACCAACA+TGG | - | chr8_1:53545768-53545787 | Msa1200710:CDS | 45.0% | |
| CCTTGATCAGACACCAACAT+GGG | - | chr8_1:53545769-53545788 | Msa1200710:CDS | 45.0% | |
| !! | TTTTTCAGTGGCTGGGAGAT+AGG | - | chr8_1:53546136-53546155 | Msa1200710:intron | 45.0% |
| GTTAGTGTTGTGTCCAGTGT+CGG | - | chr8_1:53546332-53546351 | Msa1200710:intron | 45.0% | |
| !! | GAATTATGAAGCACCGACAC+TGG | + | chr8_1:53546348-53546367 | None:intergenic | 45.0% |
| AACGTTTGGACAGAGCTACA+TGG | - | chr8_1:53546501-53546520 | Msa1200710:intron | 45.0% | |
| ! | CAGAAATTGGTCTGCCTCAT+TGG | + | chr8_1:53546545-53546564 | None:intergenic | 45.0% |
| TACCTCCTTGCAGTTGTAAG+GGG | + | chr8_1:53546668-53546687 | None:intergenic | 45.0% | |
| GTTACCTCCTTGCAGTTGTA+AGG | + | chr8_1:53546670-53546689 | None:intergenic | 45.0% | |
| !! | AATGGGAGTGCTAATGGATC+TGG | + | chr8_1:53546858-53546877 | None:intergenic | 45.0% |
| CCGCTAAGAATGAAAGCAGA+AGG | + | chr8_1:53547139-53547158 | None:intergenic | 45.0% | |
| GAGCCCCTTATATCTGTCAA+TGG | - | chr8_1:53547181-53547200 | Msa1200710:intron | 45.0% | |
| CTTCTTAGCAGTCCTTCATG+TGG | - | chr8_1:53547231-53547250 | Msa1200710:intron | 45.0% | |
| CAGCACTGTATACCACATGA+AGG | + | chr8_1:53547246-53547265 | None:intergenic | 45.0% | |
| AGTGCTGTCACAATGCTTCT+CGG | - | chr8_1:53547259-53547278 | Msa1200710:intron | 45.0% | |
| AATGCTTCTCGGGAGACTAA+AGG | - | chr8_1:53547270-53547289 | Msa1200710:intron | 45.0% | |
| ACACAAACGCAGATGCTTGA+AGG | - | chr8_1:53547663-53547682 | Msa1200710:intron | 45.0% | |
| ! | TTGAAGGTGTGTCTGGTGTT+TGG | - | chr8_1:53547679-53547698 | Msa1200710:intron | 45.0% |
| !! | CACAAGTGTTGGTGTGTTCT+CGG | + | chr8_1:53547712-53547731 | None:intergenic | 45.0% |
| ATTTACTTCCTGGTGACAGG+TGG | + | chr8_1:53548692-53548711 | None:intergenic | 45.0% | |
| ATCCTTGGAGGATGACTTCA+AGG | - | chr8_1:53548737-53548756 | Msa1200710:intron | 45.0% | |
| GATGACTTCAAGGTGGTTGT+TGG | - | chr8_1:53548747-53548766 | Msa1200710:intron | 45.0% | |
| !!! | TGTTTTTTCCGCGCGATAAC+TGG | - | chr8_1:53548817-53548836 | Msa1200710:intron | 45.0% |
| TTTCCAAACCAGTTATCGCG+CGG | + | chr8_1:53548828-53548847 | None:intergenic | 45.0% | |
| TTGTTGACAGTCCTGTCCTT+TGG | - | chr8_1:53548878-53548897 | Msa1200710:intron | 45.0% | |
| TGTTGACAGTCCTGTCCTTT+GGG | - | chr8_1:53548879-53548898 | Msa1200710:intron | 45.0% | |
| AAACAACGAATGACGCCCAA+AGG | + | chr8_1:53548897-53548916 | None:intergenic | 45.0% | |
| ! | CAGGATGGCATGCTATGTTT+TGG | - | chr8_1:53549030-53549049 | Msa1200710:intron | 45.0% |
| ! | GGATGGCATGCTATGTTTTG+GGG | - | chr8_1:53549032-53549051 | Msa1200710:intron | 45.0% |
| GATACAAGCGAGTCGTATCT+CGG | - | chr8_1:53549139-53549158 | Msa1200710:intron | 45.0% | |
| AAAGACATGCTGTGGTCCAA+GGG | - | chr8_1:53549538-53549557 | Msa1200710:intron | 45.0% | |
| TTGTCTGAGCCTTGAACAAG+GGG | + | chr8_1:53549567-53549586 | None:intergenic | 45.0% | |
| CGATGGCACTAAGAATGTGT+TGG | - | chr8_1:53550794-53550813 | Msa1200710:CDS | 45.0% | |
| CTAACTCTGTCCTACAAACC+AGG | + | chr8_1:53550870-53550889 | None:intergenic | 45.0% | |
| ! | CTGGTTTGTAGGACAGAGTT+AGG | - | chr8_1:53550868-53550887 | Msa1200710:intron | 45.0% |
| CAAAACATGCTCGACCATTG+AGG | + | chr8_1:53550933-53550952 | None:intergenic | 45.0% | |
| ! | GTTTTGTGACGGTGTAACGT+GGG | + | chr8_1:53551190-53551209 | None:intergenic | 45.0% |
| !! | AGTTTTGTGACGGTGTAACG+TGG | + | chr8_1:53551191-53551210 | None:intergenic | 45.0% |
| !!! | AGTGACCGGTAGTTTTGTGA+CGG | + | chr8_1:53551201-53551220 | None:intergenic | 45.0% |
| !! | CATGTTTGACGTTGGTGATG+TGG | + | chr8_1:53551278-53551297 | None:intergenic | 45.0% |
| !! | AAAAAAAAAATAAAGATAAA+AGG | + | chr8_1:53545992-53546011 | None:intergenic | 5.0% |
| !! | TAAATTATTTAAAGATAATT+TGG | - | chr8_1:53546737-53546756 | Msa1200710:intron | 5.0% |
| !! | CATTTATAAATTATAATAAT+AGG | + | chr8_1:53547012-53547031 | None:intergenic | 5.0% |
| GTGTGGCTATGGCTTCTTCA+AGG | - | chr8_1:53545723-53545742 | Msa1200710:CDS | 50.0% | |
| ! | CCCATGTTGGTGTCTGATCA+AGG | + | chr8_1:53545772-53545791 | None:intergenic | 50.0% |
| ACACAACCAACAGCCCATGT+TGG | + | chr8_1:53545785-53545804 | None:intergenic | 50.0% | |
| GAGGGCTTTGCTTGAAGCTT+TGG | - | chr8_1:53546164-53546183 | Msa1200710:intron | 50.0% | |
| ACACTGACACGTACATGTGC+TGG | + | chr8_1:53546314-53546333 | None:intergenic | 50.0% | |
| ! | AATTGGTCTGCCTCATTGGC+AGG | + | chr8_1:53546541-53546560 | None:intergenic | 50.0% |
| CGGGTACCTCTATATGGACA+TGG | + | chr8_1:53546568-53546587 | None:intergenic | 50.0% | |
| TGCTACCCCTTACAACTGCA+AGG | - | chr8_1:53546660-53546679 | Msa1200710:intron | 50.0% | |
| TACCCCTTACAACTGCAAGG+AGG | - | chr8_1:53546663-53546682 | Msa1200710:intron | 50.0% | |
| GTGCTGTCACAATGCTTCTC+GGG | - | chr8_1:53547260-53547279 | Msa1200710:intron | 50.0% | |
| ATTTCCTCCACATGGAGGGT+AGG | - | chr8_1:53547580-53547599 | Msa1200710:intron | 50.0% | |
| ! | CAGATGCTTGAAGGTGTGTC+TGG | - | chr8_1:53547672-53547691 | Msa1200710:intron | 50.0% |
| AGATACGAGGATGGAAGGCA+TGG | - | chr8_1:53547994-53548013 | Msa1200710:intron | 50.0% | |
| ! | GATACGAGGATGGAAGGCAT+GGG | - | chr8_1:53547995-53548014 | Msa1200710:intron | 50.0% |
| CACGGATACGAGTTTGCCAA+TGG | - | chr8_1:53548035-53548054 | Msa1200710:intron | 50.0% | |
| AAGCTGACTACCTGACTCTG+CGG | - | chr8_1:53548576-53548595 | Msa1200710:intron | 50.0% | |
| TAAATCCGTTCCGCAGAGTC+AGG | + | chr8_1:53548589-53548608 | None:intergenic | 50.0% | |
| ! | TCTGCGGAACGGATTTATCG+CGG | - | chr8_1:53548592-53548611 | Msa1200710:CDS | 50.0% |
| !! | GAACGGTCAAGTAACGGATG+CGG | + | chr8_1:53548656-53548675 | None:intergenic | 50.0% |
| CTTGACCGTTCATCTTGTGC+AGG | - | chr8_1:53548665-53548684 | Msa1200710:intron | 50.0% | |
| GTGGACCTGCACAAGATGAA+CGG | + | chr8_1:53548673-53548692 | None:intergenic | 50.0% | |
| CACCTTGAAGTCATCCTCCA+AGG | + | chr8_1:53548742-53548761 | None:intergenic | 50.0% | |
| CTTGGAGGATGACTTCAAGG+TGG | - | chr8_1:53548740-53548759 | Msa1200710:intron | 50.0% | |
| TCAAGGTGGTTGTTGGAGTC+AGG | - | chr8_1:53548754-53548773 | Msa1200710:intron | 50.0% | |
| TTTCCGCGCGATAACTGGTT+TGG | - | chr8_1:53548822-53548841 | Msa1200710:intron | 50.0% | |
| CTAGCTACACCCAGTTTAGG+TGG | + | chr8_1:53549263-53549282 | None:intergenic | 50.0% | |
| ! | TGGCTAGCTACACCCAGTTT+AGG | + | chr8_1:53549266-53549285 | None:intergenic | 50.0% |
| GAAAGACATGCTGTGGTCCA+AGG | - | chr8_1:53549537-53549556 | Msa1200710:intron | 50.0% | |
| CTTGAACAAGGGGAATCCCT+TGG | + | chr8_1:53549557-53549576 | None:intergenic | 50.0% | |
| CAAGGGATTCCCCTTGTTCA+AGG | - | chr8_1:53549555-53549574 | Msa1200710:intron | 50.0% | |
| GAAGGGTGATGTAACTGCAG+AGG | + | chr8_1:53550568-53550587 | None:intergenic | 50.0% | |
| AAAGTCGAGTGTGCGAACCA+GGG | - | chr8_1:53551126-53551145 | Msa1200710:CDS | 50.0% | |
| AGAGTGCACTGTTGAATCGG+TGG | + | chr8_1:53551161-53551180 | None:intergenic | 50.0% | |
| ATCGTAGCGAGTAGAGTGAC+CGG | + | chr8_1:53551215-53551234 | None:intergenic | 50.0% | |
| TGATCATCCGGAAAGAAGCG+CGG | - | chr8_1:53551414-53551433 | Msa1200710:five_prime_UTR | 50.0% | |
| !! | GGTATTGGTAGAGTGGTGGC+AGG | + | chr8_1:53545434-53545453 | None:intergenic | 55.0% |
| ! | CAGACACCAACATGGGCTGT+TGG | - | chr8_1:53545776-53545795 | Msa1200710:CDS | 55.0% |
| GCTGGGAGATAGGCACAAGA+GGG | - | chr8_1:53546146-53546165 | Msa1200710:intron | 55.0% | |
| CTGACACGTACATGTGCTGG+TGG | + | chr8_1:53546311-53546330 | None:intergenic | 55.0% | |
| GCATCGCGGGTACCTCTATA+TGG | + | chr8_1:53546574-53546593 | None:intergenic | 55.0% | |
| TCTTCCTACCCTCCATGTGG+AGG | + | chr8_1:53547587-53547606 | None:intergenic | 55.0% | |
| CTCTCTTCCTACCCTCCATG+TGG | + | chr8_1:53547590-53547609 | None:intergenic | 55.0% | |
| CACATGGAGGGTAGGAAGAG+AGG | - | chr8_1:53547588-53547607 | Msa1200710:intron | 55.0% | |
| GCATTGAGGCAGACACACAC+CGG | + | chr8_1:53547800-53547819 | None:intergenic | 55.0% | |
| GAGGCAGAGACATCGTCTCA+CGG | - | chr8_1:53548017-53548036 | Msa1200710:intron | 55.0% | |
| GACTACCTGACTCTGCGGAA+CGG | - | chr8_1:53548581-53548600 | Msa1200710:intron | 55.0% | |
| ACGAATGACGCCCAAAGGAC+AGG | + | chr8_1:53548892-53548911 | None:intergenic | 55.0% | |
| TAACGGCACATGTCGGACAC+TGG | - | chr8_1:53549845-53549864 | Msa1200710:intron | 55.0% | |
| GAAAGTCGAGTGTGCGAACC+AGG | - | chr8_1:53551125-53551144 | Msa1200710:CDS | 55.0% | |
| GCGCTTCTTTCCGGATGATC+AGG | + | chr8_1:53551415-53551434 | None:intergenic | 55.0% | |
| GGCTGGGAGATAGGCACAAG+AGG | - | chr8_1:53546145-53546164 | Msa1200710:intron | 60.0% | |
| ! | ACGAGGATGGAAGGCATGGG+AGG | - | chr8_1:53547998-53548017 | Msa1200710:intron | 60.0% |
| TCGAGTGTGCGAACCAGGGA+CGG | - | chr8_1:53551130-53551149 | Msa1200710:CDS | 60.0% | |
| GTGCAGGTCCACCTGTCACC+AGG | - | chr8_1:53548681-53548700 | Msa1200710:intron | 65.0% | |
| ATCGGTGGTGCTTCCGTCCC+TGG | + | chr8_1:53551146-53551165 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 53545310 | 53551680 | 53545310 | ID=Msa1200710;Name=Msa1200710 |
| chr8_1 | mRNA | 53545310 | 53551680 | 53545310 | ID=Msa1200710-mRNA-1;Parent=Msa1200710;Name=Msa1200710-mRNA-1;_AED=0.16;_eAED=0.16;_QI=307|0.71|0.86|1|0.57|0.6|15|217|539 |
| chr8_1 | exon | 53545310 | 53545339 | 53545310 | ID=Msa1200710-mRNA-1:exon:17114;Parent=Msa1200710-mRNA-1 |
| chr8_1 | exon | 53545362 | 53545965 | 53545362 | ID=Msa1200710-mRNA-1:exon:17113;Parent=Msa1200710-mRNA-1 |
| chr8_1 | exon | 53546380 | 53546416 | 53546380 | ID=Msa1200710-mRNA-1:exon:17112;Parent=Msa1200710-mRNA-1 |
| chr8_1 | exon | 53546797 | 53546864 | 53546797 | ID=Msa1200710-mRNA-1:exon:17111;Parent=Msa1200710-mRNA-1 |
| chr8_1 | exon | 53547343 | 53547516 | 53547343 | ID=Msa1200710-mRNA-1:exon:17110;Parent=Msa1200710-mRNA-1 |
| chr8_1 | exon | 53547917 | 53547957 | 53547917 | ID=Msa1200710-mRNA-1:exon:17109;Parent=Msa1200710-mRNA-1 |
| chr8_1 | exon | 53548053 | 53548102 | 53548053 | ID=Msa1200710-mRNA-1:exon:17108;Parent=Msa1200710-mRNA-1 |
| chr8_1 | exon | 53548215 | 53548303 | 53548215 | ID=Msa1200710-mRNA-1:exon:17107;Parent=Msa1200710-mRNA-1 |
| chr8_1 | exon | 53548377 | 53548451 | 53548377 | ID=Msa1200710-mRNA-1:exon:17106;Parent=Msa1200710-mRNA-1 |
| chr8_1 | exon | 53548587 | 53548643 | 53548587 | ID=Msa1200710-mRNA-1:exon:17105;Parent=Msa1200710-mRNA-1 |
| chr8_1 | exon | 53549699 | 53549815 | 53549699 | ID=Msa1200710-mRNA-1:exon:17104;Parent=Msa1200710-mRNA-1 |
| chr8_1 | exon | 53550306 | 53550523 | 53550306 | ID=Msa1200710-mRNA-1:exon:17103;Parent=Msa1200710-mRNA-1 |
| chr8_1 | exon | 53550789 | 53550846 | 53550789 | ID=Msa1200710-mRNA-1:exon:17102;Parent=Msa1200710-mRNA-1 |
| chr8_1 | exon | 53551125 | 53551499 | 53551125 | ID=Msa1200710-mRNA-1:exon:17101;Parent=Msa1200710-mRNA-1 |
| chr8_1 | exon | 53551530 | 53551680 | 53551530 | ID=Msa1200710-mRNA-1:exon:17100;Parent=Msa1200710-mRNA-1 |
| chr8_1 | five_prime_UTR | 53551530 | 53551680 | 53551530 | ID=Msa1200710-mRNA-1:five_prime_utr;Parent=Msa1200710-mRNA-1 |
| chr8_1 | five_prime_UTR | 53551344 | 53551499 | 53551344 | ID=Msa1200710-mRNA-1:five_prime_utr;Parent=Msa1200710-mRNA-1 |
| chr8_1 | CDS | 53551125 | 53551343 | 53551125 | ID=Msa1200710-mRNA-1:cds;Parent=Msa1200710-mRNA-1 |
| chr8_1 | CDS | 53550789 | 53550846 | 53550789 | ID=Msa1200710-mRNA-1:cds;Parent=Msa1200710-mRNA-1 |
| chr8_1 | CDS | 53550306 | 53550523 | 53550306 | ID=Msa1200710-mRNA-1:cds;Parent=Msa1200710-mRNA-1 |
| chr8_1 | CDS | 53549699 | 53549815 | 53549699 | ID=Msa1200710-mRNA-1:cds;Parent=Msa1200710-mRNA-1 |
| chr8_1 | CDS | 53548587 | 53548643 | 53548587 | ID=Msa1200710-mRNA-1:cds;Parent=Msa1200710-mRNA-1 |
| chr8_1 | CDS | 53548377 | 53548451 | 53548377 | ID=Msa1200710-mRNA-1:cds;Parent=Msa1200710-mRNA-1 |
| chr8_1 | CDS | 53548215 | 53548303 | 53548215 | ID=Msa1200710-mRNA-1:cds;Parent=Msa1200710-mRNA-1 |
| chr8_1 | CDS | 53548053 | 53548102 | 53548053 | ID=Msa1200710-mRNA-1:cds;Parent=Msa1200710-mRNA-1 |
| chr8_1 | CDS | 53547917 | 53547957 | 53547917 | ID=Msa1200710-mRNA-1:cds;Parent=Msa1200710-mRNA-1 |
| chr8_1 | CDS | 53547343 | 53547516 | 53547343 | ID=Msa1200710-mRNA-1:cds;Parent=Msa1200710-mRNA-1 |
| chr8_1 | CDS | 53546797 | 53546864 | 53546797 | ID=Msa1200710-mRNA-1:cds;Parent=Msa1200710-mRNA-1 |
| chr8_1 | CDS | 53546380 | 53546416 | 53546380 | ID=Msa1200710-mRNA-1:cds;Parent=Msa1200710-mRNA-1 |
| chr8_1 | CDS | 53545549 | 53545965 | 53545549 | ID=Msa1200710-mRNA-1:cds;Parent=Msa1200710-mRNA-1 |
| chr8_1 | three_prime_UTR | 53545362 | 53545548 | 53545362 | ID=Msa1200710-mRNA-1:three_prime_utr;Parent=Msa1200710-mRNA-1 |
| chr8_1 | three_prime_UTR | 53545310 | 53545339 | 53545310 | ID=Msa1200710-mRNA-1:three_prime_utr;Parent=Msa1200710-mRNA-1 |
| Gene Sequence |
| Protein sequence |
