AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1255000

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1255000 MtrunA17_Chr8g0372911 95.768 449 14 1 1 444 1 449 0.0 881
Msa1255000 MtrunA17_Chr5g0404591 59.465 449 165 7 1 443 1 438 2.49e-171 488
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1255000 AT3G50910.1 45.154 454 210 14 1 429 1 440 5.96e-100 306
Msa1255000 AT5G66480.1 37.931 464 243 11 1 440 1 443 1.73e-77 248

Find 164 sgRNAs with CRISPR-Local

Find 576 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAAGTTCTTTGAGTCTAAT+TGG 0.155116 8_2:+53370753 None:intergenic
TTGAGTATGTGCATAAATAT+TGG 0.200080 8_2:-53369244 Msa1255000:three_prime_UTR
AAAGCTAGTGCCGTTGAATT+TGG 0.227432 8_2:-53371647 Msa1255000:CDS
TATTTGTTTGTGAGCGAAAA+TGG 0.228867 8_2:+53372858 None:intergenic
CTCTCGAGCTTCTTCGAATT+AGG 0.273545 8_2:+53372111 None:intergenic
CTTTGAGATTTCTCGACTAT+TGG 0.277457 8_2:-53370735 Msa1255000:CDS
TGCACAACCTGGTAGAATTC+TGG 0.303045 8_2:-53368963 Msa1255000:three_prime_UTR
TAGAATTCTGGTTTCTAATC+TGG 0.308966 8_2:-53368951 Msa1255000:three_prime_UTR
TAGATGGTTGATTAGTAAAA+TGG 0.310380 8_2:-53369182 Msa1255000:three_prime_UTR
TGAGTATGTGCATAAATATT+GGG 0.314929 8_2:-53369243 Msa1255000:three_prime_UTR
CCTTCCACTGCAAGTCTAGA+TGG 0.346743 8_2:-53369198 Msa1255000:three_prime_UTR
TAGGAGGCAGAAATGGATTT+GGG 0.351278 8_2:-53369503 Msa1255000:CDS
TGCTCCTCCTTAAGAGGCTC+AGG 0.353968 8_2:+53371778 None:intergenic
CTGAGACATCTCTCTATTCA+TGG 0.373102 8_2:+53370691 None:intergenic
TAACAAATTACTTTATCATC+AGG 0.377517 8_2:+53368895 None:intergenic
ATACTGAATTGCGTGAAATA+AGG 0.379026 8_2:-53371039 Msa1255000:CDS
CTTAAGGAGGAGCAAGATAA+TGG 0.382480 8_2:-53371769 Msa1255000:CDS
ATGTTTGTCAGGCATGGTTA+TGG 0.382533 8_2:-53368855 Msa1255000:three_prime_UTR
AAAGTTCTTTGAGTCTAATT+GGG 0.386719 8_2:+53370754 None:intergenic
GAATCTTGAAGAGGAGAATC+TGG 0.389268 8_2:+53371991 None:intergenic
TTACTGCTATAGCATTTGAT+AGG 0.393299 8_2:-53372194 Msa1255000:CDS
TGCAGACCATGATGAGGTTT+CGG 0.393660 8_2:-53369401 Msa1255000:CDS
CTAGGAGGCAGAAATGGATT+TGG 0.396692 8_2:-53369504 Msa1255000:CDS
ATTACTACTGCCATTGTACT+TGG 0.398122 8_2:-53369475 Msa1255000:CDS
TGATACTGTGGTTTCTAGTT+CGG 0.399939 8_2:-53371830 Msa1255000:CDS
TTATCTTGCTCCTCCTTAAG+AGG 0.404003 8_2:+53371772 None:intergenic
TGTGAACCCTGAGCCTCTTA+AGG 0.422068 8_2:-53371785 Msa1255000:CDS
AGTGTTGGTGGAATATTAGT+TGG 0.424188 8_2:+53369363 None:intergenic
ACACTAACTTTGCCTAGTTA+TGG 0.427381 8_2:-53369345 Msa1255000:three_prime_UTR
ATCAGCAATGGTGGCGATGT+TGG 0.427580 8_2:-53371724 Msa1255000:CDS
GATGTTGATCCTTTACTTGA+TGG 0.428020 8_2:+53369424 None:intergenic
AGCTTCTTCGAATTAGGAAC+AGG 0.428648 8_2:+53372117 None:intergenic
ATAAAGTAATTTGTTAACTC+TGG 0.432687 8_2:-53368888 Msa1255000:three_prime_UTR
GAAGGTCTAGGAGGCAGAAA+TGG 0.437209 8_2:-53369510 Msa1255000:CDS
GCGGCTTCTCAAGAGTTTCT+CGG 0.438607 8_2:-53371914 Msa1255000:CDS
AATAAGGTTGAGTCTATTGA+TGG 0.440745 8_2:-53371023 Msa1255000:CDS
TCAGCAATGGTGGCGATGTT+GGG 0.441562 8_2:-53371723 Msa1255000:CDS
GAAGTATAACCATGTTTGTC+AGG 0.441883 8_2:-53368866 Msa1255000:three_prime_UTR
ACCATTGCTGATACTAACTT+TGG 0.442039 8_2:+53371735 None:intergenic
TCTTCTGATGGTGGCACTCA+AGG 0.443106 8_2:-53371085 Msa1255000:CDS
GAAAGTAGTAGTGATCCTAA+TGG 0.452649 8_2:-53371682 Msa1255000:CDS
AAGCAGGAGGTTTGTGAAGA+AGG 0.454450 8_2:-53371874 Msa1255000:CDS
AGAAGGAGTGGAAAAGGACT+AGG 0.458892 8_2:+53372802 None:intergenic
GAGCCGGGAGGTTCGAGGGC+GGG 0.460058 8_2:-53372165 Msa1255000:CDS
GGAAGAAGAAGGAGTGGAAA+AGG 0.462174 8_2:+53372796 None:intergenic
CTTATTCTGCTCGCAAGAAT+CGG 0.464729 8_2:+53369114 None:intergenic
TGCTTGTGTCATATTTCAGT+TGG 0.465533 8_2:-53368926 Msa1255000:three_prime_UTR
TGTGAAGAAGGAAATGTTAG+TGG 0.471437 8_2:-53371862 Msa1255000:CDS
CTAGGCAAAGTTAGTGTTGG+TGG 0.473411 8_2:+53369351 None:intergenic
CAGGGTTCACACAAGTAACT+TGG 0.473976 8_2:+53371797 None:intergenic
TCTGGAAGCGGCGTCACCTC+AGG 0.478272 8_2:+53372009 None:intergenic
GTTGAAGATTTATATTCCAC+AGG 0.486398 8_2:-53372889 Msa1255000:five_prime_UTR
GGCCAATGTACAGGCTAAGC+AGG 0.488598 8_2:-53371890 Msa1255000:CDS
GGAGAGAGATGGTGAGAGTG+AGG 0.489035 8_2:-53371626 Msa1255000:CDS
CGTTTGTGATTGATGATGTA+AGG 0.495077 8_2:+53371946 None:intergenic
GATTTATATTCCACAGGTGT+GGG 0.495377 8_2:-53372883 Msa1255000:five_prime_UTR
TGGTAAGAGCTCTGATACTG+TGG 0.496455 8_2:-53371842 Msa1255000:CDS
GTGTCATATTTCAGTTGGCT+CGG 0.501568 8_2:-53368921 Msa1255000:three_prime_UTR
ATTTGATAGGTTAATTGAGC+CGG 0.502367 8_2:-53372181 Msa1255000:CDS
GCAATAGCACTAAGATCTGC+AGG 0.502369 8_2:+53370902 None:intergenic
AGAGAAGGGTTATCTTCTGT+TGG 0.502369 8_2:-53370935 Msa1255000:CDS
TAGAGTGACGGCTTTAATTG+AGG 0.505166 8_2:+53372039 None:intergenic
ATGTTGATCCTTTACTTGAT+GGG 0.505404 8_2:+53369425 None:intergenic
AGGAACAGGCACCGAGGTGG+AGG 0.512021 8_2:+53372131 None:intergenic
ATATCAAACGCCATTGGAAG+AGG 0.513599 8_2:-53370812 Msa1255000:CDS
GTGAGAGACAAAGAAGGTCT+AGG 0.513662 8_2:-53369522 Msa1255000:CDS
TCATGGTCTCATAGTAATGA+AGG 0.513716 8_2:+53370708 None:intergenic
CTTTGCAGAGCGTTCTGTGC+CGG 0.520712 8_2:+53371534 None:intergenic
TGCTGACATAGATCATCTAC+AGG 0.523569 8_2:+53370854 None:intergenic
AGGAGGAGTAGTGAACCAAC+TGG 0.523857 8_2:-53372090 Msa1255000:CDS
TGACCCGCCCTCGAACCTCC+CGG 0.524844 8_2:+53372162 None:intergenic
TTCTTTCTAGCAGTTCCAGT+TGG 0.526672 8_2:+53372075 None:intergenic
TTTCTCGGAGGCCAATGTAC+AGG 0.527126 8_2:-53371899 Msa1255000:CDS
ACTGTGGTTTCTAGTTCGGC+TGG 0.529574 8_2:-53371826 Msa1255000:CDS
TGTAGATGATCTATGTCAGC+AGG 0.531232 8_2:-53370852 Msa1255000:CDS
GTCAGCAGGTTTACATTGCT+AGG 0.534842 8_2:-53370838 Msa1255000:CDS
AAGGAGAGAGATAGTTGTTG+TGG 0.537473 8_2:-53372921 Msa1255000:five_prime_UTR
ATAACCATGTTTGTCAGGCA+TGG 0.538893 8_2:-53368861 Msa1255000:three_prime_UTR
TTTGATAGGTTAATTGAGCC+GGG 0.540203 8_2:-53372180 Msa1255000:CDS
AACAAATTACTTTATCATCA+GGG 0.542841 8_2:+53368896 None:intergenic
TATTGCAGAAGGTGGGCGGC+TGG 0.543377 8_2:-53370885 Msa1255000:intron
AGATTTATATTCCACAGGTG+TGG 0.543602 8_2:-53372884 Msa1255000:five_prime_UTR
TTAAAAGCATGCAAAGTCAG+TGG 0.548243 8_2:-53370967 Msa1255000:CDS
AAATCTCACCTACTGCCTCC+TGG 0.550290 8_2:+53370663 None:intergenic
TTTAATTGAGGTCGAGTAGG+CGG 0.554278 8_2:+53372051 None:intergenic
AGGAACTGCTAGGGCTGAGG+CGG 0.561467 8_2:-53370792 Msa1255000:CDS
TCTCCTCTCCTACCATAACT+AGG 0.563984 8_2:+53369333 None:intergenic
GCTCCTCCTTAAGAGGCTCA+GGG 0.565583 8_2:+53371779 None:intergenic
TCTTGAGAAGCCGCGGCCCA+CGG 0.565601 8_2:+53371923 None:intergenic
TTCTTCCCCACGCAACCACA+AGG 0.568073 8_2:-53372780 Msa1255000:intron
TCGTATCTCCCATCAAGTAA+AGG 0.569425 8_2:-53369433 Msa1255000:CDS
TATGAGTTTCACAAGTTACA+CGG 0.569887 8_2:-53371572 Msa1255000:CDS
GCAAAATAATTTGTACTGAA+CGG 0.570572 8_2:+53369220 None:intergenic
AAGAGGAACTGCTAGGGCTG+AGG 0.574289 8_2:-53370795 Msa1255000:CDS
AGAGATGTCTCAGAGGAACC+AGG 0.576661 8_2:-53370681 Msa1255000:CDS
CCTGTAGAACTCTCTTCTGA+TGG 0.577110 8_2:-53371097 Msa1255000:intron
ACACGCTCTGTGAAATGTAT+CGG 0.577926 8_2:+53369082 None:intergenic
TAAAAGCATGCAAAGTCAGT+GGG 0.579631 8_2:-53370966 Msa1255000:CDS
CCTAGCAGTTCCTCTTCCAA+TGG 0.581191 8_2:+53370802 None:intergenic
GCTATGATGCATGCACAACC+TGG 0.582516 8_2:-53368974 Msa1255000:three_prime_UTR
TGTCATGTTTAGAGACGGCA+AGG 0.583208 8_2:-53369546 Msa1255000:intron
TAACTTTGCCTAGTTATGGT+AGG 0.584015 8_2:-53369341 Msa1255000:three_prime_UTR
GGCTTTAATTGAGGTCGAGT+AGG 0.589089 8_2:+53372048 None:intergenic
CCATCTCTCTCCAAATTCAA+CGG 0.589105 8_2:+53371637 None:intergenic
CAGTGGGAGAGAATCAGAGA+AGG 0.590426 8_2:-53370950 Msa1255000:CDS
GAGGTTTCGGAACACGATGA+CGG 0.590550 8_2:-53369388 Msa1255000:CDS
TCAACCATCTAGACTTGCAG+TGG 0.593282 8_2:+53369194 None:intergenic
GGTTGATTAGTAAAATGGTA+TGG 0.595405 8_2:-53369177 Msa1255000:three_prime_UTR
CACAAGTTACACGGATGGAG+AGG 0.595436 8_2:-53371563 Msa1255000:CDS
TAACTAGGCAAAGTTAGTGT+TGG 0.596793 8_2:+53369348 None:intergenic
TGAAGAGGAGAATCTGGAAG+CGG 0.596863 8_2:+53371997 None:intergenic
CAGAGGAACCAGGAGGCAGT+AGG 0.597788 8_2:-53370671 Msa1255000:intron
GTAGAACTCTCTTCTGATGG+TGG 0.597960 8_2:-53371094 Msa1255000:intron
CCATCTAGACTTGCAGTGGA+AGG 0.597977 8_2:+53369198 None:intergenic
TTGCCTAGTTATGGTAGGAG+AGG 0.598755 8_2:-53369336 Msa1255000:three_prime_UTR
AGTTTCACAAGTTACACGGA+TGG 0.602225 8_2:-53371568 Msa1255000:CDS
AGGTTCATATCAAACGCCAT+TGG 0.605043 8_2:-53370818 Msa1255000:CDS
CTCCTGCTTAGCCTGTACAT+TGG 0.606804 8_2:+53371888 None:intergenic
ATTCGAAGAAGCTCGAGAGG+AGG 0.607096 8_2:-53372107 Msa1255000:CDS
CATTGGAAGAGGAACTGCTA+GGG 0.609694 8_2:-53370801 Msa1255000:CDS
GAGGAAGTTGAATCTTGAAG+AGG 0.609779 8_2:+53371982 None:intergenic
ACGGATGGAGAGGATAATAC+CGG 0.610530 8_2:-53371553 Msa1255000:CDS
TGATCCTAATGGAAAGCATG+TGG 0.611128 8_2:-53371671 Msa1255000:CDS
CGTGTTCCGAAACCTCATCA+TGG 0.613190 8_2:+53369395 None:intergenic
AAGCGGCGTCACCTCAGGAG+TGG 0.619420 8_2:+53372014 None:intergenic
TTGATGATGTAAGGAGAAGG+CGG 0.620549 8_2:+53371955 None:intergenic
ACCAAAGTTAGTATCAGCAA+TGG 0.625369 8_2:-53371736 Msa1255000:CDS
CCATTGGAAGAGGAACTGCT+AGG 0.626094 8_2:-53370802 Msa1255000:CDS
ATCATCAATCACAAACGCCG+TGG 0.627424 8_2:-53371940 Msa1255000:CDS
TGGTTGCGTGGGGAAGAAGA+AGG 0.631552 8_2:+53372785 None:intergenic
TGCTGTAGTACCAAGTACAA+TGG 0.632131 8_2:+53369465 None:intergenic
AAAGTTAGTATCAGCAATGG+TGG 0.632304 8_2:-53371733 Msa1255000:CDS
CCGTTGAATTTGGAGAGAGA+TGG 0.634551 8_2:-53371637 Msa1255000:CDS
CTAATTCGAAGAAGCTCGAG+AGG 0.634698 8_2:-53372110 Msa1255000:CDS
GCGTGGGGAAGAAGAAGGAG+TGG 0.635550 8_2:+53372790 None:intergenic
AATGCTATAGCAGTAAATGT+CGG 0.635938 8_2:+53372201 None:intergenic
GTAAGGAGAAGGCGGAAACG+AGG 0.636635 8_2:+53371963 None:intergenic
AGGAGGCAGAAATGGATTTG+GGG 0.642757 8_2:-53369502 Msa1255000:CDS
ATAACCATGCCTGACAAACA+TGG 0.643269 8_2:+53368857 None:intergenic
TCAGGAGTGGCATAGAGTGA+CGG 0.645583 8_2:+53372027 None:intergenic
TGCAAAGTATAGCACTGCTG+CGG 0.648345 8_2:-53371518 Msa1255000:CDS
GAACCCTGAGCCTCTTAAGG+AGG 0.648635 8_2:-53371782 Msa1255000:CDS
AGTGGGAGAGAATCAGAGAA+GGG 0.650304 8_2:-53370949 Msa1255000:CDS
TGATTGATGATGTAAGGAGA+AGG 0.653569 8_2:+53371952 None:intergenic
ATTAGGAACAGGCACCGAGG+TGG 0.660865 8_2:+53372128 None:intergenic
TCATCAATCACAAACGCCGT+GGG 0.662353 8_2:-53371939 Msa1255000:CDS
TTAGAAACCAGAATTCTACC+AGG 0.664028 8_2:+53368956 None:intergenic
AACATCTGCAGACCATGATG+AGG 0.664570 8_2:-53369407 Msa1255000:CDS
AGAGACAAAGAAGGTCTAGG+AGG 0.667738 8_2:-53369519 Msa1255000:CDS
TTGGTACTACAGCAATAGCA+TGG 0.668403 8_2:-53369456 Msa1255000:CDS
CAAGGCGTGAGAGACAAAGA+AGG 0.669676 8_2:-53369528 Msa1255000:CDS
GTCACTCTATGCCACTCCTG+AGG 0.670762 8_2:-53372025 Msa1255000:CDS
CAATGTACAGGCTAAGCAGG+AGG 0.671371 8_2:-53371887 Msa1255000:CDS
GAAAATGGTTCCCACACCTG+TGG 0.677073 8_2:+53372873 None:intergenic
GTGCTATTGCAGAAGGTGGG+CGG 0.677325 8_2:-53370889 Msa1255000:intron
GAGAAACTCTTGAGAAGCCG+CGG 0.680768 8_2:+53371916 None:intergenic
TGAATAGAGAGATGTCTCAG+AGG 0.688163 8_2:-53370688 Msa1255000:CDS
TGATGAGTTAGAATGCTCGA+AGG 0.690848 8_2:+53369041 None:intergenic
GCTTCTCAAGAGTTTCTCGG+AGG 0.702405 8_2:-53371911 Msa1255000:CDS
ATAGAACTCATAGTATCACG+TGG 0.720038 8_2:+53371592 None:intergenic
CGAATTAGGAACAGGCACCG+AGG 0.730067 8_2:+53372125 None:intergenic
TGGTATTTATCTTATCAACG+TGG 0.737675 8_2:+53369153 None:intergenic
GATGTCTCAGAGGAACCAGG+AGG 0.739860 8_2:-53370678 Msa1255000:CDS
GATAGGTTAATTGAGCCGGG+AGG 0.794072 8_2:-53372177 Msa1255000:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAATTTTTTGTTTTGAATT+GGG + chr8_2:53369055-53369074 None:intergenic 10.0%
!!! AATAATTTTTTGTTTTGAAT+TGG + chr8_2:53369056-53369075 None:intergenic 10.0%
!!! ATTTTTCTATCTTTTTTTTT+TGG - chr8_2:53369153-53369172 Msa1255000:three_prime_UTR 10.0%
!! ATTTAAATTTAATTCAATCA+TGG - chr8_2:53369382-53369401 Msa1255000:CDS 10.0%
!!! TATTTAAATTTAATTAGCTT+TGG - chr8_2:53369450-53369469 Msa1255000:CDS 10.0%
!!! TTTTGTTTTTCTAAATATTT+TGG - chr8_2:53371869-53371888 Msa1255000:CDS 10.0%
!!! ATAATTTTTTGTTTTGAATT+GGG + chr8_2:53369055-53369074 None:intergenic 10.0%
!!! AATAATTTTTTGTTTTGAAT+TGG + chr8_2:53369056-53369075 None:intergenic 10.0%
!!! ATTTTTCTATCTTTTTTTTT+TGG - chr8_2:53369153-53369172 Msa1255000:three_prime_UTR 10.0%
!! ATTTAAATTTAATTCAATCA+TGG - chr8_2:53369382-53369401 Msa1255000:CDS 10.0%
!!! TATTTAAATTTAATTAGCTT+TGG - chr8_2:53369450-53369469 Msa1255000:CDS 10.0%
!!! TTTTGTTTTTCTAAATATTT+TGG - chr8_2:53371869-53371888 Msa1255000:CDS 10.0%
!!! TAATTTTTTGTTTTGAATTG+GGG + chr8_2:53369054-53369073 None:intergenic 15.0%
!! AAAGATAGAAAAATTGAAAT+CGG + chr8_2:53369147-53369166 None:intergenic 15.0%
!! TTAAAATATGAAAAGCTAAA+TGG + chr8_2:53370396-53370415 None:intergenic 15.0%
!!! CATTTTAAATGCATAATAAT+GGG + chr8_2:53371264-53371283 None:intergenic 15.0%
!!! TCATTTTAAATGCATAATAA+TGG + chr8_2:53371265-53371284 None:intergenic 15.0%
!! TTATTTACATAATCAAACAT+TGG + chr8_2:53371481-53371500 None:intergenic 15.0%
!! ATGTAATATACTATGTTAAT+TGG - chr8_2:53371502-53371521 Msa1255000:CDS 15.0%
!! TGTAATATACTATGTTAATT+GGG - chr8_2:53371503-53371522 Msa1255000:CDS 15.0%
!! ACTAAACAATAAATGATAAA+CGG + chr8_2:53371716-53371735 None:intergenic 15.0%
!!! TAATTTTTTGTTTTGAATTG+GGG + chr8_2:53369054-53369073 None:intergenic 15.0%
!! AAAGATAGAAAAATTGAAAT+CGG + chr8_2:53369147-53369166 None:intergenic 15.0%
!! TTAAAATATGAAAAGCTAAA+TGG + chr8_2:53370396-53370415 None:intergenic 15.0%
!!! CATTTTAAATGCATAATAAT+GGG + chr8_2:53371264-53371283 None:intergenic 15.0%
!!! TCATTTTAAATGCATAATAA+TGG + chr8_2:53371265-53371284 None:intergenic 15.0%
!! TTATTTACATAATCAAACAT+TGG + chr8_2:53371481-53371500 None:intergenic 15.0%
!! ATGTAATATACTATGTTAAT+TGG - chr8_2:53371502-53371521 Msa1255000:CDS 15.0%
!! TGTAATATACTATGTTAATT+GGG - chr8_2:53371503-53371522 Msa1255000:CDS 15.0%
!! ACTAAACAATAAATGATAAA+CGG + chr8_2:53371716-53371735 None:intergenic 15.0%
!! ATGAATAAATAAAAACCTTG+TGG + chr8_2:53368993-53369012 None:intergenic 20.0%
!!! TATCTTTTTTTTTTGGCTTT+TGG - chr8_2:53369160-53369179 Msa1255000:three_prime_UTR 20.0%
!! ATTCAATAGAGTTTGTAATT+CGG - chr8_2:53370357-53370376 Msa1255000:intron 20.0%
!! ATCAAATCAAAGACAAATTT+AGG + chr8_2:53370493-53370512 None:intergenic 20.0%
!!! AATGACAAATTTAGGATATT+TGG + chr8_2:53370518-53370537 None:intergenic 20.0%
!! GATAAATCAATGACAAATTT+AGG + chr8_2:53370526-53370545 None:intergenic 20.0%
!! ATATAATTATGATAAAGCGA+AGG - chr8_2:53370564-53370583 Msa1255000:intron 20.0%
!!! ATAATAATGGGAATTTTTGT+TGG + chr8_2:53371252-53371271 None:intergenic 20.0%
!! CTACATTTCATAATAAATGA+TGG + chr8_2:53371596-53371615 None:intergenic 20.0%
!!! CATTTATTGTTTAGTTTTTG+TGG - chr8_2:53371721-53371740 Msa1255000:CDS 20.0%
!!! TGATTTGAACATAATTTTAG+TGG - chr8_2:53372019-53372038 Msa1255000:CDS 20.0%
!!! GATTTGAACATAATTTTAGT+GGG - chr8_2:53372020-53372039 Msa1255000:CDS 20.0%
!!! ATACTTCAATTACAATTTTG+CGG - chr8_2:53372484-53372503 Msa1255000:intron 20.0%
!! AACAAATTACTTTATCATCA+GGG + chr8_2:53372862-53372881 None:intergenic 20.0%
!! TAACAAATTACTTTATCATC+AGG + chr8_2:53372863-53372882 None:intergenic 20.0%
!!! ATAAAGTAATTTGTTAACTC+TGG - chr8_2:53372867-53372886 Msa1255000:five_prime_UTR 20.0%
!! ATGAATAAATAAAAACCTTG+TGG + chr8_2:53368993-53369012 None:intergenic 20.0%
!!! TATCTTTTTTTTTTGGCTTT+TGG - chr8_2:53369160-53369179 Msa1255000:three_prime_UTR 20.0%
!! ATTCAATAGAGTTTGTAATT+CGG - chr8_2:53370357-53370376 Msa1255000:intron 20.0%
!! ATCAAATCAAAGACAAATTT+AGG + chr8_2:53370493-53370512 None:intergenic 20.0%
!!! AATGACAAATTTAGGATATT+TGG + chr8_2:53370518-53370537 None:intergenic 20.0%
!! GATAAATCAATGACAAATTT+AGG + chr8_2:53370526-53370545 None:intergenic 20.0%
!! ATATAATTATGATAAAGCGA+AGG - chr8_2:53370564-53370583 Msa1255000:intron 20.0%
!!! ATAATAATGGGAATTTTTGT+TGG + chr8_2:53371252-53371271 None:intergenic 20.0%
!! CTACATTTCATAATAAATGA+TGG + chr8_2:53371596-53371615 None:intergenic 20.0%
!!! CATTTATTGTTTAGTTTTTG+TGG - chr8_2:53371721-53371740 Msa1255000:CDS 20.0%
!!! TGATTTGAACATAATTTTAG+TGG - chr8_2:53372019-53372038 Msa1255000:CDS 20.0%
!!! GATTTGAACATAATTTTAGT+GGG - chr8_2:53372020-53372039 Msa1255000:CDS 20.0%
!!! ATACTTCAATTACAATTTTG+CGG - chr8_2:53372484-53372503 Msa1255000:intron 20.0%
!! AACAAATTACTTTATCATCA+GGG + chr8_2:53372862-53372881 None:intergenic 20.0%
!! TAACAAATTACTTTATCATC+AGG + chr8_2:53372863-53372882 None:intergenic 20.0%
!!! ATAAAGTAATTTGTTAACTC+TGG - chr8_2:53372867-53372886 Msa1255000:five_prime_UTR 20.0%
! ATAATAAGAAACGAGAAATG+AGG + chr8_2:53369030-53369049 None:intergenic 25.0%
! GAAGAAAAGGAAAATGAAAA+CGG + chr8_2:53369225-53369244 None:intergenic 25.0%
!!! AATTATGATTTGTTTCTGTC+AGG - chr8_2:53369272-53369291 Msa1255000:three_prime_UTR 25.0%
!! TCCTCAATTTGTATTAGTTT+AGG - chr8_2:53369337-53369356 Msa1255000:three_prime_UTR 25.0%
! ACCTAAACTAATACAAATTG+AGG + chr8_2:53369341-53369360 None:intergenic 25.0%
! AAAGTTCTTTGAGTCTAATT+GGG + chr8_2:53371004-53371023 None:intergenic 25.0%
!! AAGATATATGGTTTGTCATT+TGG + chr8_2:53371690-53371709 None:intergenic 25.0%
! GTAATAATACTAGTGAAGTA+TGG - chr8_2:53371755-53371774 Msa1255000:CDS 25.0%
! ATGATATGTAGATAGGTAAA+TGG + chr8_2:53371985-53372004 None:intergenic 25.0%
!!! CACAGATTTTTAATTCTCTA+GGG - chr8_2:53372049-53372068 Msa1255000:CDS 25.0%
! GACATATATTTAAGCAAACA+AGG + chr8_2:53372136-53372155 None:intergenic 25.0%
! ATGACATAAATGAGAAAAAG+TGG + chr8_2:53372185-53372204 None:intergenic 25.0%
! TTGAGTATGTGCATAAATAT+TGG - chr8_2:53372511-53372530 Msa1255000:intron 25.0%
! TGAGTATGTGCATAAATATT+GGG - chr8_2:53372512-53372531 Msa1255000:intron 25.0%
!! GCAAAATAATTTGTACTGAA+CGG + chr8_2:53372538-53372557 None:intergenic 25.0%
! TAGATGGTTGATTAGTAAAA+TGG - chr8_2:53372573-53372592 Msa1255000:intron 25.0%
! TCGGTAAGAAAAAAACTATA+TGG + chr8_2:53372625-53372644 None:intergenic 25.0%
! ATAATAAGAAACGAGAAATG+AGG + chr8_2:53369030-53369049 None:intergenic 25.0%
! GAAGAAAAGGAAAATGAAAA+CGG + chr8_2:53369225-53369244 None:intergenic 25.0%
!!! AATTATGATTTGTTTCTGTC+AGG - chr8_2:53369272-53369291 Msa1255000:three_prime_UTR 25.0%
!! TCCTCAATTTGTATTAGTTT+AGG - chr8_2:53369337-53369356 Msa1255000:three_prime_UTR 25.0%
! ACCTAAACTAATACAAATTG+AGG + chr8_2:53369341-53369360 None:intergenic 25.0%
! AAAGTTCTTTGAGTCTAATT+GGG + chr8_2:53371004-53371023 None:intergenic 25.0%
!! AAGATATATGGTTTGTCATT+TGG + chr8_2:53371690-53371709 None:intergenic 25.0%
! GTAATAATACTAGTGAAGTA+TGG - chr8_2:53371755-53371774 Msa1255000:CDS 25.0%
! ATGATATGTAGATAGGTAAA+TGG + chr8_2:53371985-53372004 None:intergenic 25.0%
!!! CACAGATTTTTAATTCTCTA+GGG - chr8_2:53372049-53372068 Msa1255000:CDS 25.0%
! GACATATATTTAAGCAAACA+AGG + chr8_2:53372136-53372155 None:intergenic 25.0%
! ATGACATAAATGAGAAAAAG+TGG + chr8_2:53372185-53372204 None:intergenic 25.0%
! TTGAGTATGTGCATAAATAT+TGG - chr8_2:53372511-53372530 Msa1255000:intron 25.0%
! TGAGTATGTGCATAAATATT+GGG - chr8_2:53372512-53372531 Msa1255000:intron 25.0%
!! GCAAAATAATTTGTACTGAA+CGG + chr8_2:53372538-53372557 None:intergenic 25.0%
! TAGATGGTTGATTAGTAAAA+TGG - chr8_2:53372573-53372592 Msa1255000:intron 25.0%
! TCGGTAAGAAAAAAACTATA+TGG + chr8_2:53372625-53372644 None:intergenic 25.0%
GTTGAAGATTTATATTCCAC+AGG - chr8_2:53368866-53368885 Msa1255000:three_prime_UTR 30.0%
TATTTGTTTGTGAGCGAAAA+TGG + chr8_2:53368900-53368919 None:intergenic 30.0%
AGGAAAAAAGAAGAAGAAGA+AGG + chr8_2:53368936-53368955 None:intergenic 30.0%
CAACAAAACAGAAGAAGAAA+AGG + chr8_2:53369238-53369257 None:intergenic 30.0%
! CTTTTCTTCTTCTGTTTTGT+TGG - chr8_2:53369236-53369255 Msa1255000:three_prime_UTR 30.0%
AATGCTATAGCAGTAAATGT+CGG + chr8_2:53369557-53369576 None:intergenic 30.0%
TTACTGCTATAGCATTTGAT+AGG - chr8_2:53369561-53369580 Msa1255000:intron 30.0%
ATTTGATAGGTTAATTGAGC+CGG - chr8_2:53369574-53369593 Msa1255000:intron 30.0%
TATGAGTTTCACAAGTTACA+CGG - chr8_2:53370183-53370202 Msa1255000:intron 30.0%
TCTATTGAATAAAACATCCG+TGG + chr8_2:53370347-53370366 None:intergenic 30.0%
!!! GTCGTTTTTCTCATATTTTC+TGG - chr8_2:53370423-53370442 Msa1255000:intron 30.0%
ATGATAAAGCGAAGGAAAAA+AGG - chr8_2:53370572-53370591 Msa1255000:intron 30.0%
! AAAAGGATATCTGGATGTTT+TGG - chr8_2:53370589-53370608 Msa1255000:intron 30.0%
! AAAGGATATCTGGATGTTTT+GGG - chr8_2:53370590-53370609 Msa1255000:intron 30.0%
ATACTGAATTGCGTGAAATA+AGG - chr8_2:53370716-53370735 Msa1255000:CDS 30.0%
AATAAGGTTGAGTCTATTGA+TGG - chr8_2:53370732-53370751 Msa1255000:CDS 30.0%
CAAAGTTCTTTGAGTCTAAT+TGG + chr8_2:53371005-53371024 None:intergenic 30.0%
TGTTCAAGAGTTATAAAGAC+CGG - chr8_2:53371370-53371389 Msa1255000:intron 30.0%
ATCAGGATTATGGTAATTGA+TGG - chr8_2:53371332-53371351 Msa1255000:intron 30.0%
! GATTATGGTAATTGATGGTA+TGG - chr8_2:53371410-53371429 Msa1255000:intron 30.0%
GATAAACGGTTGAAGATATA+TGG + chr8_2:53371702-53371721 None:intergenic 30.0%
! AGTTTTTGTGGATTTGAACT+TGG - chr8_2:53371733-53371752 Msa1255000:CDS 30.0%
!!! TTCCTTCTGATCTTTGTTTT+AGG - chr8_2:53371906-53371925 Msa1255000:CDS 30.0%
AACCTAAAACAAAGATCAGA+AGG + chr8_2:53371911-53371930 None:intergenic 30.0%
TCATGTAACAACACATTTGT+AGG - chr8_2:53371930-53371949 Msa1255000:CDS 30.0%
ACCTATCTACATATCATGTT+AGG - chr8_2:53371988-53372007 Msa1255000:CDS 30.0%
CCTAGAGAATTAAAAATCTG+TGG + chr8_2:53372051-53372070 None:intergenic 30.0%
!! CCACAGATTTTTAATTCTCT+AGG - chr8_2:53372048-53372067 Msa1255000:CDS 30.0%
AAGCAGGCTAAAAATAAACT+AGG + chr8_2:53372158-53372177 None:intergenic 30.0%
! TTTTCTGTCATGTTTAGAGA+CGG - chr8_2:53372204-53372223 Msa1255000:CDS 30.0%
ATGTTGATCCTTTACTTGAT+GGG + chr8_2:53372333-53372352 None:intergenic 30.0%
! AAGTTTTACATGCTACTATG+TGG - chr8_2:53372449-53372468 Msa1255000:intron 30.0%
GGTTGATTAGTAAAATGGTA+TGG - chr8_2:53372578-53372597 Msa1255000:intron 30.0%
TGGTATTTATCTTATCAACG+TGG + chr8_2:53372605-53372624 None:intergenic 30.0%
!! TAGAATTCTGGTTTCTAATC+TGG - chr8_2:53372804-53372823 Msa1255000:five_prime_UTR 30.0%
GTTGAAGATTTATATTCCAC+AGG - chr8_2:53368866-53368885 Msa1255000:three_prime_UTR 30.0%
TATTTGTTTGTGAGCGAAAA+TGG + chr8_2:53368900-53368919 None:intergenic 30.0%
AGGAAAAAAGAAGAAGAAGA+AGG + chr8_2:53368936-53368955 None:intergenic 30.0%
CAACAAAACAGAAGAAGAAA+AGG + chr8_2:53369238-53369257 None:intergenic 30.0%
! CTTTTCTTCTTCTGTTTTGT+TGG - chr8_2:53369236-53369255 Msa1255000:three_prime_UTR 30.0%
AATGCTATAGCAGTAAATGT+CGG + chr8_2:53369557-53369576 None:intergenic 30.0%
TTACTGCTATAGCATTTGAT+AGG - chr8_2:53369561-53369580 Msa1255000:intron 30.0%
ATTTGATAGGTTAATTGAGC+CGG - chr8_2:53369574-53369593 Msa1255000:intron 30.0%
TATGAGTTTCACAAGTTACA+CGG - chr8_2:53370183-53370202 Msa1255000:intron 30.0%
TCTATTGAATAAAACATCCG+TGG + chr8_2:53370347-53370366 None:intergenic 30.0%
!!! GTCGTTTTTCTCATATTTTC+TGG - chr8_2:53370423-53370442 Msa1255000:intron 30.0%
ATGATAAAGCGAAGGAAAAA+AGG - chr8_2:53370572-53370591 Msa1255000:intron 30.0%
! AAAAGGATATCTGGATGTTT+TGG - chr8_2:53370589-53370608 Msa1255000:intron 30.0%
! AAAGGATATCTGGATGTTTT+GGG - chr8_2:53370590-53370609 Msa1255000:intron 30.0%
ATACTGAATTGCGTGAAATA+AGG - chr8_2:53370716-53370735 Msa1255000:CDS 30.0%
AATAAGGTTGAGTCTATTGA+TGG - chr8_2:53370732-53370751 Msa1255000:CDS 30.0%
CAAAGTTCTTTGAGTCTAAT+TGG + chr8_2:53371005-53371024 None:intergenic 30.0%
TGTTCAAGAGTTATAAAGAC+CGG - chr8_2:53371370-53371389 Msa1255000:intron 30.0%
ATCAGGATTATGGTAATTGA+TGG - chr8_2:53371332-53371351 Msa1255000:intron 30.0%
! GATTATGGTAATTGATGGTA+TGG - chr8_2:53371410-53371429 Msa1255000:intron 30.0%
GATAAACGGTTGAAGATATA+TGG + chr8_2:53371702-53371721 None:intergenic 30.0%
! AGTTTTTGTGGATTTGAACT+TGG - chr8_2:53371733-53371752 Msa1255000:CDS 30.0%
!!! TTCCTTCTGATCTTTGTTTT+AGG - chr8_2:53371906-53371925 Msa1255000:CDS 30.0%
AACCTAAAACAAAGATCAGA+AGG + chr8_2:53371911-53371930 None:intergenic 30.0%
TCATGTAACAACACATTTGT+AGG - chr8_2:53371930-53371949 Msa1255000:CDS 30.0%
ACCTATCTACATATCATGTT+AGG - chr8_2:53371988-53372007 Msa1255000:CDS 30.0%
CCTAGAGAATTAAAAATCTG+TGG + chr8_2:53372051-53372070 None:intergenic 30.0%
!! CCACAGATTTTTAATTCTCT+AGG - chr8_2:53372048-53372067 Msa1255000:CDS 30.0%
AAGCAGGCTAAAAATAAACT+AGG + chr8_2:53372158-53372177 None:intergenic 30.0%
! TTTTCTGTCATGTTTAGAGA+CGG - chr8_2:53372204-53372223 Msa1255000:CDS 30.0%
ATGTTGATCCTTTACTTGAT+GGG + chr8_2:53372333-53372352 None:intergenic 30.0%
! AAGTTTTACATGCTACTATG+TGG - chr8_2:53372449-53372468 Msa1255000:intron 30.0%
GGTTGATTAGTAAAATGGTA+TGG - chr8_2:53372578-53372597 Msa1255000:intron 30.0%
TGGTATTTATCTTATCAACG+TGG + chr8_2:53372605-53372624 None:intergenic 30.0%
!! TAGAATTCTGGTTTCTAATC+TGG - chr8_2:53372804-53372823 Msa1255000:five_prime_UTR 30.0%
AGATTTATATTCCACAGGTG+TGG - chr8_2:53368871-53368890 Msa1255000:three_prime_UTR 35.0%
GATTTATATTCCACAGGTGT+GGG - chr8_2:53368872-53368891 Msa1255000:three_prime_UTR 35.0%
!! TTGTTTCTGTCAGGTGTATT+CGG - chr8_2:53369281-53369300 Msa1255000:three_prime_UTR 35.0%
TTTGATAGGTTAATTGAGCC+GGG - chr8_2:53369575-53369594 Msa1255000:intron 35.0%
!! TGATTGATGATGTAAGGAGA+AGG + chr8_2:53369806-53369825 None:intergenic 35.0%
!! CGTTTGTGATTGATGATGTA+AGG + chr8_2:53369812-53369831 None:intergenic 35.0%
TGTGAAGAAGGAAATGTTAG+TGG - chr8_2:53369893-53369912 Msa1255000:intron 35.0%
!! TGATACTGTGGTTTCTAGTT+CGG - chr8_2:53369925-53369944 Msa1255000:intron 35.0%
ACCAAAGTTAGTATCAGCAA+TGG - chr8_2:53370019-53370038 Msa1255000:intron 35.0%
ACCATTGCTGATACTAACTT+TGG + chr8_2:53370023-53370042 None:intergenic 35.0%
AAAGTTAGTATCAGCAATGG+TGG - chr8_2:53370022-53370041 Msa1255000:intron 35.0%
GAAAGTAGTAGTGATCCTAA+TGG - chr8_2:53370073-53370092 Msa1255000:intron 35.0%
! TTTTCCACATGCTTTCCATT+AGG + chr8_2:53370091-53370110 None:intergenic 35.0%
ATAGAACTCATAGTATCACG+TGG + chr8_2:53370166-53370185 None:intergenic 35.0%
TTGGGAAGGTAAAATAAACC+AGG - chr8_2:53370273-53370292 Msa1255000:intron 35.0%
GAACTAAAACAGAGTTAACC+TGG + chr8_2:53370294-53370313 None:intergenic 35.0%
TTGTAATTCGGCATGATGTT+AGG - chr8_2:53370369-53370388 Msa1255000:intron 35.0%
ATCTCATAGATTCGCTTACT+TGG - chr8_2:53370621-53370640 Msa1255000:intron 35.0%
! TTAAAAGCATGCAAAGTCAG+TGG - chr8_2:53370788-53370807 Msa1255000:CDS 35.0%
! TAAAAGCATGCAAAGTCAGT+GGG - chr8_2:53370789-53370808 Msa1255000:CDS 35.0%
!! CTTTGAGATTTCTCGACTAT+TGG - chr8_2:53371020-53371039 Msa1255000:CDS 35.0%
TCATGGTCTCATAGTAATGA+AGG + chr8_2:53371050-53371069 None:intergenic 35.0%
TGTTCAAGAGTTGTAAACAC+CGG - chr8_2:53371297-53371316 Msa1255000:intron 35.0%
GTTCAAGAGTTATAAAGACC+GGG - chr8_2:53371371-53371390 Msa1255000:intron 35.0%
GATCAGAAGGAAAAGAGATA+CGG + chr8_2:53371898-53371917 None:intergenic 35.0%
GCCTAACATGATATGTAGAT+AGG + chr8_2:53371992-53372011 None:intergenic 35.0%
! AGCGATATTCTGTTTTCTGT+TGG - chr8_2:53372108-53372127 Msa1255000:CDS 35.0%
ATTACTACTGCCATTGTACT+TGG - chr8_2:53372280-53372299 Msa1255000:intron 35.0%
GATGTTGATCCTTTACTTGA+TGG + chr8_2:53372334-53372353 None:intergenic 35.0%
!! AGTGTTGGTGGAATATTAGT+TGG + chr8_2:53372395-53372414 None:intergenic 35.0%
TAACTAGGCAAAGTTAGTGT+TGG + chr8_2:53372410-53372429 None:intergenic 35.0%
ACACTAACTTTGCCTAGTTA+TGG - chr8_2:53372410-53372429 Msa1255000:intron 35.0%
TAACTTTGCCTAGTTATGGT+AGG - chr8_2:53372414-53372433 Msa1255000:intron 35.0%
TTAGAAACCAGAATTCTACC+AGG + chr8_2:53372802-53372821 None:intergenic 35.0%
TGCTTGTGTCATATTTCAGT+TGG - chr8_2:53372829-53372848 Msa1255000:five_prime_UTR 35.0%
GAAGTATAACCATGTTTGTC+AGG - chr8_2:53372889-53372908 Msa1255000:five_prime_UTR 35.0%
AGATTTATATTCCACAGGTG+TGG - chr8_2:53368871-53368890 Msa1255000:three_prime_UTR 35.0%
GATTTATATTCCACAGGTGT+GGG - chr8_2:53368872-53368891 Msa1255000:three_prime_UTR 35.0%
!! TTGTTTCTGTCAGGTGTATT+CGG - chr8_2:53369281-53369300 Msa1255000:three_prime_UTR 35.0%
TTTGATAGGTTAATTGAGCC+GGG - chr8_2:53369575-53369594 Msa1255000:intron 35.0%
!! TGATTGATGATGTAAGGAGA+AGG + chr8_2:53369806-53369825 None:intergenic 35.0%
!! CGTTTGTGATTGATGATGTA+AGG + chr8_2:53369812-53369831 None:intergenic 35.0%
TGTGAAGAAGGAAATGTTAG+TGG - chr8_2:53369893-53369912 Msa1255000:intron 35.0%
!! TGATACTGTGGTTTCTAGTT+CGG - chr8_2:53369925-53369944 Msa1255000:intron 35.0%
ACCAAAGTTAGTATCAGCAA+TGG - chr8_2:53370019-53370038 Msa1255000:intron 35.0%
ACCATTGCTGATACTAACTT+TGG + chr8_2:53370023-53370042 None:intergenic 35.0%
AAAGTTAGTATCAGCAATGG+TGG - chr8_2:53370022-53370041 Msa1255000:intron 35.0%
GAAAGTAGTAGTGATCCTAA+TGG - chr8_2:53370073-53370092 Msa1255000:intron 35.0%
! TTTTCCACATGCTTTCCATT+AGG + chr8_2:53370091-53370110 None:intergenic 35.0%
ATAGAACTCATAGTATCACG+TGG + chr8_2:53370166-53370185 None:intergenic 35.0%
TTGGGAAGGTAAAATAAACC+AGG - chr8_2:53370273-53370292 Msa1255000:intron 35.0%
GAACTAAAACAGAGTTAACC+TGG + chr8_2:53370294-53370313 None:intergenic 35.0%
TTGTAATTCGGCATGATGTT+AGG - chr8_2:53370369-53370388 Msa1255000:intron 35.0%
ATCTCATAGATTCGCTTACT+TGG - chr8_2:53370621-53370640 Msa1255000:intron 35.0%
! TTAAAAGCATGCAAAGTCAG+TGG - chr8_2:53370788-53370807 Msa1255000:CDS 35.0%
! TAAAAGCATGCAAAGTCAGT+GGG - chr8_2:53370789-53370808 Msa1255000:CDS 35.0%
!! CTTTGAGATTTCTCGACTAT+TGG - chr8_2:53371020-53371039 Msa1255000:CDS 35.0%
TCATGGTCTCATAGTAATGA+AGG + chr8_2:53371050-53371069 None:intergenic 35.0%
TGTTCAAGAGTTGTAAACAC+CGG - chr8_2:53371297-53371316 Msa1255000:intron 35.0%
GTTCAAGAGTTATAAAGACC+GGG - chr8_2:53371371-53371390 Msa1255000:intron 35.0%
GATCAGAAGGAAAAGAGATA+CGG + chr8_2:53371898-53371917 None:intergenic 35.0%
GCCTAACATGATATGTAGAT+AGG + chr8_2:53371992-53372011 None:intergenic 35.0%
! AGCGATATTCTGTTTTCTGT+TGG - chr8_2:53372108-53372127 Msa1255000:CDS 35.0%
ATTACTACTGCCATTGTACT+TGG - chr8_2:53372280-53372299 Msa1255000:intron 35.0%
GATGTTGATCCTTTACTTGA+TGG + chr8_2:53372334-53372353 None:intergenic 35.0%
!! AGTGTTGGTGGAATATTAGT+TGG + chr8_2:53372395-53372414 None:intergenic 35.0%
TAACTAGGCAAAGTTAGTGT+TGG + chr8_2:53372410-53372429 None:intergenic 35.0%
ACACTAACTTTGCCTAGTTA+TGG - chr8_2:53372410-53372429 Msa1255000:intron 35.0%
TAACTTTGCCTAGTTATGGT+AGG - chr8_2:53372414-53372433 Msa1255000:intron 35.0%
TTAGAAACCAGAATTCTACC+AGG + chr8_2:53372802-53372821 None:intergenic 35.0%
TGCTTGTGTCATATTTCAGT+TGG - chr8_2:53372829-53372848 Msa1255000:five_prime_UTR 35.0%
GAAGTATAACCATGTTTGTC+AGG - chr8_2:53372889-53372908 Msa1255000:five_prime_UTR 35.0%
AAGGAGAGAGATAGTTGTTG+TGG - chr8_2:53368834-53368853 Msa1255000:three_prime_UTR 40.0%
TAAAAACCTTGTGGTTGCGT+GGG + chr8_2:53368984-53369003 None:intergenic 40.0%
ATAAAAACCTTGTGGTTGCG+TGG + chr8_2:53368985-53369004 None:intergenic 40.0%
GAACCTAAGATGAATTCGTG+CGG + chr8_2:53369110-53369129 None:intergenic 40.0%
AGCTTCTTCGAATTAGGAAC+AGG + chr8_2:53369641-53369660 None:intergenic 40.0%
! TTCTTTCTAGCAGTTCCAGT+TGG + chr8_2:53369683-53369702 None:intergenic 40.0%
TTTAATTGAGGTCGAGTAGG+CGG + chr8_2:53369707-53369726 None:intergenic 40.0%
! TAGAGTGACGGCTTTAATTG+AGG + chr8_2:53369719-53369738 None:intergenic 40.0%
GAATCTTGAAGAGGAGAATC+TGG + chr8_2:53369767-53369786 None:intergenic 40.0%
GAGGAAGTTGAATCTTGAAG+AGG + chr8_2:53369776-53369795 None:intergenic 40.0%
!! TTGATGATGTAAGGAGAAGG+CGG + chr8_2:53369803-53369822 None:intergenic 40.0%
TTATCTTGCTCCTCCTTAAG+AGG + chr8_2:53369986-53370005 None:intergenic 40.0%
CTTAAGGAGGAGCAAGATAA+TGG - chr8_2:53369986-53370005 Msa1255000:intron 40.0%
! TGATCCTAATGGAAAGCATG+TGG - chr8_2:53370084-53370103 Msa1255000:intron 40.0%
! AAAGCTAGTGCCGTTGAATT+TGG - chr8_2:53370108-53370127 Msa1255000:intron 40.0%
CCATCTCTCTCCAAATTCAA+CGG + chr8_2:53370121-53370140 None:intergenic 40.0%
AGTTTCACAAGTTACACGGA+TGG - chr8_2:53370187-53370206 Msa1255000:intron 40.0%
TGCAATTGCACATGTGCATT+TGG - chr8_2:53370316-53370335 Msa1255000:intron 40.0%
ATGTGCATTTGGACAAACCA+CGG - chr8_2:53370327-53370346 Msa1255000:intron 40.0%
GCGAAGGAAAAAAGGATATC+TGG - chr8_2:53370580-53370599 Msa1255000:intron 40.0%
AGAGAAGGGTTATCTTCTGT+TGG - chr8_2:53370820-53370839 Msa1255000:CDS 40.0%
! GATCTTAGTGCTATTGCAGA+AGG - chr8_2:53370859-53370878 Msa1255000:CDS 40.0%
! TTAGTGCTATTGCAGAAGGT+GGG - chr8_2:53370863-53370882 Msa1255000:CDS 40.0%
TGCTGACATAGATCATCTAC+AGG + chr8_2:53370904-53370923 None:intergenic 40.0%
TGTAGATGATCTATGTCAGC+AGG - chr8_2:53370903-53370922 Msa1255000:intron 40.0%
AGGTTCATATCAAACGCCAT+TGG - chr8_2:53370937-53370956 Msa1255000:CDS 40.0%
ATATCAAACGCCATTGGAAG+AGG - chr8_2:53370943-53370962 Msa1255000:CDS 40.0%
CTGAGACATCTCTCTATTCA+TGG + chr8_2:53371067-53371086 None:intergenic 40.0%
TGAATAGAGAGATGTCTCAG+AGG - chr8_2:53371067-53371086 Msa1255000:CDS 40.0%
CATCTATGTATCTCCTAGCT+AGG - chr8_2:53371200-53371219 Msa1255000:intron 40.0%
TATGTATCTCCTAGCTAGGA+CGG - chr8_2:53371204-53371223 Msa1255000:intron 40.0%
TAAATAAACCCGTCCTAGCT+AGG + chr8_2:53371216-53371235 None:intergenic 40.0%
GTTCAAGAGTTGTAAACACC+GGG - chr8_2:53371298-53371317 Msa1255000:intron 40.0%
GGCACTTAGTATCAGGATTA+TGG - chr8_2:53371395-53371414 Msa1255000:intron 40.0%
! GTTGGGGGTATAGTTTATAG+TGG + chr8_2:53371537-53371556 None:intergenic 40.0%
TCTTCGAACAATTCCCTCTT+TGG + chr8_2:53371564-53371583 None:intergenic 40.0%
TGGCATGTACTATAATCGCA+AGG - chr8_2:53371775-53371794 Msa1255000:CDS 40.0%
! TAGGAGGCAGAAATGGATTT+GGG - chr8_2:53372252-53372271 Msa1255000:intron 40.0%
TGCTGTAGTACCAAGTACAA+TGG + chr8_2:53372293-53372312 None:intergenic 40.0%
TTGGTACTACAGCAATAGCA+TGG - chr8_2:53372299-53372318 Msa1255000:intron 40.0%
TCGTATCTCCCATCAAGTAA+AGG - chr8_2:53372322-53372341 Msa1255000:intron 40.0%
CTTATTCTGCTCGCAAGAAT+CGG + chr8_2:53372644-53372663 None:intergenic 40.0%
ACACGCTCTGTGAAATGTAT+CGG + chr8_2:53372676-53372695 None:intergenic 40.0%
TGATGAGTTAGAATGCTCGA+AGG + chr8_2:53372717-53372736 None:intergenic 40.0%
GTGTCATATTTCAGTTGGCT+CGG - chr8_2:53372834-53372853 Msa1255000:five_prime_UTR 40.0%
ATAACCATGTTTGTCAGGCA+TGG - chr8_2:53372894-53372913 Msa1255000:five_prime_UTR 40.0%
ATAACCATGCCTGACAAACA+TGG + chr8_2:53372901-53372920 None:intergenic 40.0%
ATGTTTGTCAGGCATGGTTA+TGG - chr8_2:53372900-53372919 Msa1255000:five_prime_UTR 40.0%
AAGGAGAGAGATAGTTGTTG+TGG - chr8_2:53368834-53368853 Msa1255000:three_prime_UTR 40.0%
TAAAAACCTTGTGGTTGCGT+GGG + chr8_2:53368984-53369003 None:intergenic 40.0%
ATAAAAACCTTGTGGTTGCG+TGG + chr8_2:53368985-53369004 None:intergenic 40.0%
GAACCTAAGATGAATTCGTG+CGG + chr8_2:53369110-53369129 None:intergenic 40.0%
AGCTTCTTCGAATTAGGAAC+AGG + chr8_2:53369641-53369660 None:intergenic 40.0%
! TTCTTTCTAGCAGTTCCAGT+TGG + chr8_2:53369683-53369702 None:intergenic 40.0%
TTTAATTGAGGTCGAGTAGG+CGG + chr8_2:53369707-53369726 None:intergenic 40.0%
! TAGAGTGACGGCTTTAATTG+AGG + chr8_2:53369719-53369738 None:intergenic 40.0%
GAATCTTGAAGAGGAGAATC+TGG + chr8_2:53369767-53369786 None:intergenic 40.0%
GAGGAAGTTGAATCTTGAAG+AGG + chr8_2:53369776-53369795 None:intergenic 40.0%
!! TTGATGATGTAAGGAGAAGG+CGG + chr8_2:53369803-53369822 None:intergenic 40.0%
TTATCTTGCTCCTCCTTAAG+AGG + chr8_2:53369986-53370005 None:intergenic 40.0%
CTTAAGGAGGAGCAAGATAA+TGG - chr8_2:53369986-53370005 Msa1255000:intron 40.0%
! TGATCCTAATGGAAAGCATG+TGG - chr8_2:53370084-53370103 Msa1255000:intron 40.0%
! AAAGCTAGTGCCGTTGAATT+TGG - chr8_2:53370108-53370127 Msa1255000:intron 40.0%
CCATCTCTCTCCAAATTCAA+CGG + chr8_2:53370121-53370140 None:intergenic 40.0%
AGTTTCACAAGTTACACGGA+TGG - chr8_2:53370187-53370206 Msa1255000:intron 40.0%
TGCAATTGCACATGTGCATT+TGG - chr8_2:53370316-53370335 Msa1255000:intron 40.0%
ATGTGCATTTGGACAAACCA+CGG - chr8_2:53370327-53370346 Msa1255000:intron 40.0%
GCGAAGGAAAAAAGGATATC+TGG - chr8_2:53370580-53370599 Msa1255000:intron 40.0%
AGAGAAGGGTTATCTTCTGT+TGG - chr8_2:53370820-53370839 Msa1255000:CDS 40.0%
! GATCTTAGTGCTATTGCAGA+AGG - chr8_2:53370859-53370878 Msa1255000:CDS 40.0%
! TTAGTGCTATTGCAGAAGGT+GGG - chr8_2:53370863-53370882 Msa1255000:CDS 40.0%
TGCTGACATAGATCATCTAC+AGG + chr8_2:53370904-53370923 None:intergenic 40.0%
TGTAGATGATCTATGTCAGC+AGG - chr8_2:53370903-53370922 Msa1255000:intron 40.0%
AGGTTCATATCAAACGCCAT+TGG - chr8_2:53370937-53370956 Msa1255000:CDS 40.0%
ATATCAAACGCCATTGGAAG+AGG - chr8_2:53370943-53370962 Msa1255000:CDS 40.0%
CTGAGACATCTCTCTATTCA+TGG + chr8_2:53371067-53371086 None:intergenic 40.0%
TGAATAGAGAGATGTCTCAG+AGG - chr8_2:53371067-53371086 Msa1255000:CDS 40.0%
CATCTATGTATCTCCTAGCT+AGG - chr8_2:53371200-53371219 Msa1255000:intron 40.0%
TATGTATCTCCTAGCTAGGA+CGG - chr8_2:53371204-53371223 Msa1255000:intron 40.0%
TAAATAAACCCGTCCTAGCT+AGG + chr8_2:53371216-53371235 None:intergenic 40.0%
GTTCAAGAGTTGTAAACACC+GGG - chr8_2:53371298-53371317 Msa1255000:intron 40.0%
GGCACTTAGTATCAGGATTA+TGG - chr8_2:53371395-53371414 Msa1255000:intron 40.0%
! GTTGGGGGTATAGTTTATAG+TGG + chr8_2:53371537-53371556 None:intergenic 40.0%
TCTTCGAACAATTCCCTCTT+TGG + chr8_2:53371564-53371583 None:intergenic 40.0%
TGGCATGTACTATAATCGCA+AGG - chr8_2:53371775-53371794 Msa1255000:CDS 40.0%
! TAGGAGGCAGAAATGGATTT+GGG - chr8_2:53372252-53372271 Msa1255000:intron 40.0%
TGCTGTAGTACCAAGTACAA+TGG + chr8_2:53372293-53372312 None:intergenic 40.0%
TTGGTACTACAGCAATAGCA+TGG - chr8_2:53372299-53372318 Msa1255000:intron 40.0%
TCGTATCTCCCATCAAGTAA+AGG - chr8_2:53372322-53372341 Msa1255000:intron 40.0%
CTTATTCTGCTCGCAAGAAT+CGG + chr8_2:53372644-53372663 None:intergenic 40.0%
ACACGCTCTGTGAAATGTAT+CGG + chr8_2:53372676-53372695 None:intergenic 40.0%
TGATGAGTTAGAATGCTCGA+AGG + chr8_2:53372717-53372736 None:intergenic 40.0%
GTGTCATATTTCAGTTGGCT+CGG - chr8_2:53372834-53372853 Msa1255000:five_prime_UTR 40.0%
ATAACCATGTTTGTCAGGCA+TGG - chr8_2:53372894-53372913 Msa1255000:five_prime_UTR 40.0%
ATAACCATGCCTGACAAACA+TGG + chr8_2:53372901-53372920 None:intergenic 40.0%
ATGTTTGTCAGGCATGGTTA+TGG - chr8_2:53372900-53372919 Msa1255000:five_prime_UTR 40.0%
AGAAGGAGTGGAAAAGGACT+AGG + chr8_2:53368956-53368975 None:intergenic 45.0%
GGAAGAAGAAGGAGTGGAAA+AGG + chr8_2:53368962-53368981 None:intergenic 45.0%
AAAAACCTTGTGGTTGCGTG+GGG + chr8_2:53368983-53369002 None:intergenic 45.0%
TTGCCGCACGAATTCATCTT+AGG - chr8_2:53369104-53369123 Msa1255000:three_prime_UTR 45.0%
TCTGTCAGGTGTATTCGGTT+AGG - chr8_2:53369286-53369305 Msa1255000:three_prime_UTR 45.0%
CTGTCAGGTGTATTCGGTTA+GGG - chr8_2:53369287-53369306 Msa1255000:three_prime_UTR 45.0%
TCAAAAATCTGCCTCCACCT+CGG - chr8_2:53369613-53369632 Msa1255000:intron 45.0%
CTCTCGAGCTTCTTCGAATT+AGG + chr8_2:53369647-53369666 None:intergenic 45.0%
CTAATTCGAAGAAGCTCGAG+AGG - chr8_2:53369645-53369664 Msa1255000:intron 45.0%
! GGCTTTAATTGAGGTCGAGT+AGG + chr8_2:53369710-53369729 None:intergenic 45.0%
TGAAGAGGAGAATCTGGAAG+CGG + chr8_2:53369761-53369780 None:intergenic 45.0%
ATCATCAATCACAAACGCCG+TGG - chr8_2:53369815-53369834 Msa1255000:intron 45.0%
TCATCAATCACAAACGCCGT+GGG - chr8_2:53369816-53369835 Msa1255000:intron 45.0%
AAGCAGGAGGTTTGTGAAGA+AGG - chr8_2:53369881-53369900 Msa1255000:intron 45.0%
! TGGTAAGAGCTCTGATACTG+TGG - chr8_2:53369913-53369932 Msa1255000:intron 45.0%
CAGGGTTCACACAAGTAACT+TGG + chr8_2:53369961-53369980 None:intergenic 45.0%
CCGTTGAATTTGGAGAGAGA+TGG - chr8_2:53370118-53370137 Msa1255000:intron 45.0%
ACGGATGGAGAGGATAATAC+CGG - chr8_2:53370202-53370221 Msa1255000:intron 45.0%
TGCAAAGTATAGCACTGCTG+CGG - chr8_2:53370237-53370256 Msa1255000:intron 45.0%
!!! TGCGGAGTTTTTTGACGCTT+GGG - chr8_2:53370255-53370274 Msa1255000:intron 45.0%
!!! GAGTTTTTTGACGCTTGGGA+AGG - chr8_2:53370259-53370278 Msa1255000:intron 45.0%
CCATCAGAAGAGAGTTCTAC+AGG + chr8_2:53370661-53370680 None:intergenic 45.0%
CCTGTAGAACTCTCTTCTGA+TGG - chr8_2:53370658-53370677 Msa1255000:intron 45.0%
GTAGAACTCTCTTCTGATGG+TGG - chr8_2:53370661-53370680 Msa1255000:intron 45.0%
AGTGGGAGAGAATCAGAGAA+GGG - chr8_2:53370806-53370825 Msa1255000:CDS 45.0%
GCAATAGCACTAAGATCTGC+AGG + chr8_2:53370856-53370875 None:intergenic 45.0%
! CTTAGTGCTATTGCAGAAGG+TGG - chr8_2:53370862-53370881 Msa1255000:CDS 45.0%
GTCAGCAGGTTTACATTGCT+AGG - chr8_2:53370917-53370936 Msa1255000:CDS 45.0%
CATTGGAAGAGGAACTGCTA+GGG - chr8_2:53370954-53370973 Msa1255000:CDS 45.0%
ATGTATCTCCTAGCTAGGAC+GGG - chr8_2:53371205-53371224 Msa1255000:intron 45.0%
! GGCACTGAGTATCAGGATTA+TGG - chr8_2:53371322-53371341 Msa1255000:intron 45.0%
CAAGAGTTATAAAGACCGGG+TGG - chr8_2:53371374-53371393 Msa1255000:intron 45.0%
ATTCCCTCTTTGGTGGAGTT+GGG + chr8_2:53371554-53371573 None:intergenic 45.0%
AATTCCCTCTTTGGTGGAGT+TGG + chr8_2:53371555-53371574 None:intergenic 45.0%
TCGAACAATTCCCTCTTTGG+TGG + chr8_2:53371561-53371580 None:intergenic 45.0%
GAGAAAAAGTGGAGCAAAGC+AGG + chr8_2:53372174-53372193 None:intergenic 45.0%
TGTCATGTTTAGAGACGGCA+AGG - chr8_2:53372209-53372228 Msa1255000:exon 45.0%
GTGAGAGACAAAGAAGGTCT+AGG - chr8_2:53372233-53372252 Msa1255000:intron 45.0%
AGAGACAAAGAAGGTCTAGG+AGG - chr8_2:53372236-53372255 Msa1255000:intron 45.0%
! CTAGGAGGCAGAAATGGATT+TGG - chr8_2:53372251-53372270 Msa1255000:intron 45.0%
! AGGAGGCAGAAATGGATTTG+GGG - chr8_2:53372253-53372272 Msa1255000:intron 45.0%
AACATCTGCAGACCATGATG+AGG - chr8_2:53372348-53372367 Msa1255000:intron 45.0%
TGCAGACCATGATGAGGTTT+CGG - chr8_2:53372354-53372373 Msa1255000:intron 45.0%
! CTAGGCAAAGTTAGTGTTGG+TGG + chr8_2:53372407-53372426 None:intergenic 45.0%
TTGCCTAGTTATGGTAGGAG+AGG - chr8_2:53372419-53372438 Msa1255000:intron 45.0%
TCTCCTCTCCTACCATAACT+AGG + chr8_2:53372425-53372444 None:intergenic 45.0%
TCAACCATCTAGACTTGCAG+TGG + chr8_2:53372564-53372583 None:intergenic 45.0%
TGCACAACCTGGTAGAATTC+TGG - chr8_2:53372792-53372811 Msa1255000:five_prime_UTR 45.0%
AGAAGGAGTGGAAAAGGACT+AGG + chr8_2:53368956-53368975 None:intergenic 45.0%
GGAAGAAGAAGGAGTGGAAA+AGG + chr8_2:53368962-53368981 None:intergenic 45.0%
AAAAACCTTGTGGTTGCGTG+GGG + chr8_2:53368983-53369002 None:intergenic 45.0%
TTGCCGCACGAATTCATCTT+AGG - chr8_2:53369104-53369123 Msa1255000:three_prime_UTR 45.0%
TCTGTCAGGTGTATTCGGTT+AGG - chr8_2:53369286-53369305 Msa1255000:three_prime_UTR 45.0%
CTGTCAGGTGTATTCGGTTA+GGG - chr8_2:53369287-53369306 Msa1255000:three_prime_UTR 45.0%
TCAAAAATCTGCCTCCACCT+CGG - chr8_2:53369613-53369632 Msa1255000:intron 45.0%
CTCTCGAGCTTCTTCGAATT+AGG + chr8_2:53369647-53369666 None:intergenic 45.0%
CTAATTCGAAGAAGCTCGAG+AGG - chr8_2:53369645-53369664 Msa1255000:intron 45.0%
! GGCTTTAATTGAGGTCGAGT+AGG + chr8_2:53369710-53369729 None:intergenic 45.0%
TGAAGAGGAGAATCTGGAAG+CGG + chr8_2:53369761-53369780 None:intergenic 45.0%
ATCATCAATCACAAACGCCG+TGG - chr8_2:53369815-53369834 Msa1255000:intron 45.0%
TCATCAATCACAAACGCCGT+GGG - chr8_2:53369816-53369835 Msa1255000:intron 45.0%
AAGCAGGAGGTTTGTGAAGA+AGG - chr8_2:53369881-53369900 Msa1255000:intron 45.0%
! TGGTAAGAGCTCTGATACTG+TGG - chr8_2:53369913-53369932 Msa1255000:intron 45.0%
CAGGGTTCACACAAGTAACT+TGG + chr8_2:53369961-53369980 None:intergenic 45.0%
CCGTTGAATTTGGAGAGAGA+TGG - chr8_2:53370118-53370137 Msa1255000:intron 45.0%
ACGGATGGAGAGGATAATAC+CGG - chr8_2:53370202-53370221 Msa1255000:intron 45.0%
TGCAAAGTATAGCACTGCTG+CGG - chr8_2:53370237-53370256 Msa1255000:intron 45.0%
!!! TGCGGAGTTTTTTGACGCTT+GGG - chr8_2:53370255-53370274 Msa1255000:intron 45.0%
!!! GAGTTTTTTGACGCTTGGGA+AGG - chr8_2:53370259-53370278 Msa1255000:intron 45.0%
CCATCAGAAGAGAGTTCTAC+AGG + chr8_2:53370661-53370680 None:intergenic 45.0%
CCTGTAGAACTCTCTTCTGA+TGG - chr8_2:53370658-53370677 Msa1255000:intron 45.0%
GTAGAACTCTCTTCTGATGG+TGG - chr8_2:53370661-53370680 Msa1255000:intron 45.0%
AGTGGGAGAGAATCAGAGAA+GGG - chr8_2:53370806-53370825 Msa1255000:CDS 45.0%
GCAATAGCACTAAGATCTGC+AGG + chr8_2:53370856-53370875 None:intergenic 45.0%
! CTTAGTGCTATTGCAGAAGG+TGG - chr8_2:53370862-53370881 Msa1255000:CDS 45.0%
GTCAGCAGGTTTACATTGCT+AGG - chr8_2:53370917-53370936 Msa1255000:CDS 45.0%
CATTGGAAGAGGAACTGCTA+GGG - chr8_2:53370954-53370973 Msa1255000:CDS 45.0%
ATGTATCTCCTAGCTAGGAC+GGG - chr8_2:53371205-53371224 Msa1255000:intron 45.0%
! GGCACTGAGTATCAGGATTA+TGG - chr8_2:53371322-53371341 Msa1255000:intron 45.0%
CAAGAGTTATAAAGACCGGG+TGG - chr8_2:53371374-53371393 Msa1255000:intron 45.0%
ATTCCCTCTTTGGTGGAGTT+GGG + chr8_2:53371554-53371573 None:intergenic 45.0%
AATTCCCTCTTTGGTGGAGT+TGG + chr8_2:53371555-53371574 None:intergenic 45.0%
TCGAACAATTCCCTCTTTGG+TGG + chr8_2:53371561-53371580 None:intergenic 45.0%
GAGAAAAAGTGGAGCAAAGC+AGG + chr8_2:53372174-53372193 None:intergenic 45.0%
TGTCATGTTTAGAGACGGCA+AGG - chr8_2:53372209-53372228 Msa1255000:exon 45.0%
GTGAGAGACAAAGAAGGTCT+AGG - chr8_2:53372233-53372252 Msa1255000:intron 45.0%
AGAGACAAAGAAGGTCTAGG+AGG - chr8_2:53372236-53372255 Msa1255000:intron 45.0%
! CTAGGAGGCAGAAATGGATT+TGG - chr8_2:53372251-53372270 Msa1255000:intron 45.0%
! AGGAGGCAGAAATGGATTTG+GGG - chr8_2:53372253-53372272 Msa1255000:intron 45.0%
AACATCTGCAGACCATGATG+AGG - chr8_2:53372348-53372367 Msa1255000:intron 45.0%
TGCAGACCATGATGAGGTTT+CGG - chr8_2:53372354-53372373 Msa1255000:intron 45.0%
! CTAGGCAAAGTTAGTGTTGG+TGG + chr8_2:53372407-53372426 None:intergenic 45.0%
TTGCCTAGTTATGGTAGGAG+AGG - chr8_2:53372419-53372438 Msa1255000:intron 45.0%
TCTCCTCTCCTACCATAACT+AGG + chr8_2:53372425-53372444 None:intergenic 45.0%
TCAACCATCTAGACTTGCAG+TGG + chr8_2:53372564-53372583 None:intergenic 45.0%
TGCACAACCTGGTAGAATTC+TGG - chr8_2:53372792-53372811 Msa1255000:five_prime_UTR 45.0%
GAAAATGGTTCCCACACCTG+TGG + chr8_2:53368885-53368904 None:intergenic 50.0%
GATAGGTTAATTGAGCCGGG+AGG - chr8_2:53369578-53369597 Msa1255000:intron 50.0%
ATTCGAAGAAGCTCGAGAGG+AGG - chr8_2:53369648-53369667 Msa1255000:intron 50.0%
AGGAGGAGTAGTGAACCAAC+TGG - chr8_2:53369665-53369684 Msa1255000:intron 50.0%
TCAGGAGTGGCATAGAGTGA+CGG + chr8_2:53369731-53369750 None:intergenic 50.0%
GAGAAACTCTTGAGAAGCCG+CGG + chr8_2:53369842-53369861 None:intergenic 50.0%
GCGGCTTCTCAAGAGTTTCT+CGG - chr8_2:53369841-53369860 Msa1255000:intron 50.0%
GCTTCTCAAGAGTTTCTCGG+AGG - chr8_2:53369844-53369863 Msa1255000:intron 50.0%
TTTCTCGGAGGCCAATGTAC+AGG - chr8_2:53369856-53369875 Msa1255000:intron 50.0%
CTCCTGCTTAGCCTGTACAT+TGG + chr8_2:53369870-53369889 None:intergenic 50.0%
CAATGTACAGGCTAAGCAGG+AGG - chr8_2:53369868-53369887 Msa1255000:intron 50.0%
!! ACTGTGGTTTCTAGTTCGGC+TGG - chr8_2:53369929-53369948 Msa1255000:intron 50.0%
TGTGAACCCTGAGCCTCTTA+AGG - chr8_2:53369970-53369989 Msa1255000:intron 50.0%
! ATCAGCAATGGTGGCGATGT+TGG - chr8_2:53370031-53370050 Msa1255000:intron 50.0%
! TCAGCAATGGTGGCGATGTT+GGG - chr8_2:53370032-53370051 Msa1255000:intron 50.0%
CACAAGTTACACGGATGGAG+AGG - chr8_2:53370192-53370211 Msa1255000:intron 50.0%
!!! CTGCGGAGTTTTTTGACGCT+TGG - chr8_2:53370254-53370273 Msa1255000:intron 50.0%
!! TCTTCTGATGGTGGCACTCA+AGG - chr8_2:53370670-53370689 Msa1255000:intron 50.0%
CAGTGGGAGAGAATCAGAGA+AGG - chr8_2:53370805-53370824 Msa1255000:CDS 50.0%
CCTAGCAGTTCCTCTTCCAA+TGG + chr8_2:53370956-53370975 None:intergenic 50.0%
CCATTGGAAGAGGAACTGCT+AGG - chr8_2:53370953-53370972 Msa1255000:CDS 50.0%
AGAGATGTCTCAGAGGAACC+AGG - chr8_2:53371074-53371093 Msa1255000:CDS 50.0%
AAATCTCACCTACTGCCTCC+TGG + chr8_2:53371095-53371114 None:intergenic 50.0%
CAAGAGTTGTAAACACCGGG+TGG - chr8_2:53371301-53371320 Msa1255000:intron 50.0%
TCCTGATACTAAGTGCCACC+CGG + chr8_2:53371392-53371411 None:intergenic 50.0%
GAATCAGCATTGTCTGTCCG+CGG - chr8_2:53371449-53371468 Msa1255000:intron 50.0%
AATCAGCATTGTCTGTCCGC+GGG - chr8_2:53371450-53371469 Msa1255000:intron 50.0%
TTCCCTCTTTGGTGGAGTTG+GGG + chr8_2:53371553-53371572 None:intergenic 50.0%
CAAGGCGTGAGAGACAAAGA+AGG - chr8_2:53372227-53372246 Msa1255000:intron 50.0%
GAAGGTCTAGGAGGCAGAAA+TGG - chr8_2:53372245-53372264 Msa1255000:intron 50.0%
CGTGTTCCGAAACCTCATCA+TGG + chr8_2:53372363-53372382 None:intergenic 50.0%
GAGGTTTCGGAACACGATGA+CGG - chr8_2:53372367-53372386 Msa1255000:intron 50.0%
CCATCTAGACTTGCAGTGGA+AGG + chr8_2:53372560-53372579 None:intergenic 50.0%
CCTTCCACTGCAAGTCTAGA+TGG - chr8_2:53372557-53372576 Msa1255000:intron 50.0%
GCTATGATGCATGCACAACC+TGG - chr8_2:53372781-53372800 Msa1255000:five_prime_UTR 50.0%
GAAAATGGTTCCCACACCTG+TGG + chr8_2:53368885-53368904 None:intergenic 50.0%
GATAGGTTAATTGAGCCGGG+AGG - chr8_2:53369578-53369597 Msa1255000:intron 50.0%
ATTCGAAGAAGCTCGAGAGG+AGG - chr8_2:53369648-53369667 Msa1255000:intron 50.0%
AGGAGGAGTAGTGAACCAAC+TGG - chr8_2:53369665-53369684 Msa1255000:intron 50.0%
TCAGGAGTGGCATAGAGTGA+CGG + chr8_2:53369731-53369750 None:intergenic 50.0%
GAGAAACTCTTGAGAAGCCG+CGG + chr8_2:53369842-53369861 None:intergenic 50.0%
GCGGCTTCTCAAGAGTTTCT+CGG - chr8_2:53369841-53369860 Msa1255000:intron 50.0%
GCTTCTCAAGAGTTTCTCGG+AGG - chr8_2:53369844-53369863 Msa1255000:intron 50.0%
TTTCTCGGAGGCCAATGTAC+AGG - chr8_2:53369856-53369875 Msa1255000:intron 50.0%
CTCCTGCTTAGCCTGTACAT+TGG + chr8_2:53369870-53369889 None:intergenic 50.0%
CAATGTACAGGCTAAGCAGG+AGG - chr8_2:53369868-53369887 Msa1255000:intron 50.0%
!! ACTGTGGTTTCTAGTTCGGC+TGG - chr8_2:53369929-53369948 Msa1255000:intron 50.0%
TGTGAACCCTGAGCCTCTTA+AGG - chr8_2:53369970-53369989 Msa1255000:intron 50.0%
! ATCAGCAATGGTGGCGATGT+TGG - chr8_2:53370031-53370050 Msa1255000:intron 50.0%
! TCAGCAATGGTGGCGATGTT+GGG - chr8_2:53370032-53370051 Msa1255000:intron 50.0%
CACAAGTTACACGGATGGAG+AGG - chr8_2:53370192-53370211 Msa1255000:intron 50.0%
!!! CTGCGGAGTTTTTTGACGCT+TGG - chr8_2:53370254-53370273 Msa1255000:intron 50.0%
!! TCTTCTGATGGTGGCACTCA+AGG - chr8_2:53370670-53370689 Msa1255000:intron 50.0%
CAGTGGGAGAGAATCAGAGA+AGG - chr8_2:53370805-53370824 Msa1255000:CDS 50.0%
CCTAGCAGTTCCTCTTCCAA+TGG + chr8_2:53370956-53370975 None:intergenic 50.0%
CCATTGGAAGAGGAACTGCT+AGG - chr8_2:53370953-53370972 Msa1255000:CDS 50.0%
AGAGATGTCTCAGAGGAACC+AGG - chr8_2:53371074-53371093 Msa1255000:CDS 50.0%
AAATCTCACCTACTGCCTCC+TGG + chr8_2:53371095-53371114 None:intergenic 50.0%
CAAGAGTTGTAAACACCGGG+TGG - chr8_2:53371301-53371320 Msa1255000:intron 50.0%
TCCTGATACTAAGTGCCACC+CGG + chr8_2:53371392-53371411 None:intergenic 50.0%
GAATCAGCATTGTCTGTCCG+CGG - chr8_2:53371449-53371468 Msa1255000:intron 50.0%
AATCAGCATTGTCTGTCCGC+GGG - chr8_2:53371450-53371469 Msa1255000:intron 50.0%
TTCCCTCTTTGGTGGAGTTG+GGG + chr8_2:53371553-53371572 None:intergenic 50.0%
CAAGGCGTGAGAGACAAAGA+AGG - chr8_2:53372227-53372246 Msa1255000:intron 50.0%
GAAGGTCTAGGAGGCAGAAA+TGG - chr8_2:53372245-53372264 Msa1255000:intron 50.0%
CGTGTTCCGAAACCTCATCA+TGG + chr8_2:53372363-53372382 None:intergenic 50.0%
GAGGTTTCGGAACACGATGA+CGG - chr8_2:53372367-53372386 Msa1255000:intron 50.0%
CCATCTAGACTTGCAGTGGA+AGG + chr8_2:53372560-53372579 None:intergenic 50.0%
CCTTCCACTGCAAGTCTAGA+TGG - chr8_2:53372557-53372576 Msa1255000:intron 50.0%
GCTATGATGCATGCACAACC+TGG - chr8_2:53372781-53372800 Msa1255000:five_prime_UTR 50.0%
TGGTTGCGTGGGGAAGAAGA+AGG + chr8_2:53368973-53368992 None:intergenic 55.0%
TTCTTCCCCACGCAACCACA+AGG - chr8_2:53368975-53368994 Msa1255000:three_prime_UTR 55.0%
TAATTGAGCCGGGAGGTTCG+AGG - chr8_2:53369585-53369604 Msa1255000:intron 55.0%
AATTGAGCCGGGAGGTTCGA+GGG - chr8_2:53369586-53369605 Msa1255000:intron 55.0%
!! ATTAGGAACAGGCACCGAGG+TGG + chr8_2:53369630-53369649 None:intergenic 55.0%
! CGAATTAGGAACAGGCACCG+AGG + chr8_2:53369633-53369652 None:intergenic 55.0%
GTCACTCTATGCCACTCCTG+AGG - chr8_2:53369730-53369749 Msa1255000:intron 55.0%
GTAAGGAGAAGGCGGAAACG+AGG + chr8_2:53369795-53369814 None:intergenic 55.0%
GGCCAATGTACAGGCTAAGC+AGG - chr8_2:53369865-53369884 Msa1255000:intron 55.0%
GAACCCTGAGCCTCTTAAGG+AGG - chr8_2:53369973-53369992 Msa1255000:intron 55.0%
GCTCCTCCTTAAGAGGCTCA+GGG + chr8_2:53369979-53369998 None:intergenic 55.0%
TGCTCCTCCTTAAGAGGCTC+AGG + chr8_2:53369980-53369999 None:intergenic 55.0%
GGAGAGAGATGGTGAGAGTG+AGG - chr8_2:53370129-53370148 Msa1255000:intron 55.0%
! CTTTGCAGAGCGTTCTGTGC+CGG + chr8_2:53370224-53370243 None:intergenic 55.0%
! GTGCTATTGCAGAAGGTGGG+CGG - chr8_2:53370866-53370885 Msa1255000:CDS 55.0%
AAGAGGAACTGCTAGGGCTG+AGG - chr8_2:53370960-53370979 Msa1255000:CDS 55.0%
GATGTCTCAGAGGAACCAGG+AGG - chr8_2:53371077-53371096 Msa1255000:CDS 55.0%
TCCTGATACTCAGTGCCACC+CGG + chr8_2:53371319-53371338 None:intergenic 55.0%
ACCGGGTGGCACTTAGTATC+AGG - chr8_2:53371388-53371407 Msa1255000:intron 55.0%
TCAAACATTGGCCCTACCCG+CGG + chr8_2:53371469-53371488 None:intergenic 55.0%
TACCCCCAACTCCACCAAAG+AGG - chr8_2:53371547-53371566 Msa1255000:CDS 55.0%
ACCCCCAACTCCACCAAAGA+GGG - chr8_2:53371548-53371567 Msa1255000:CDS 55.0%
TCCCTCTTTGGTGGAGTTGG+GGG + chr8_2:53371552-53371571 None:intergenic 55.0%
TGGTTGCGTGGGGAAGAAGA+AGG + chr8_2:53368973-53368992 None:intergenic 55.0%
TTCTTCCCCACGCAACCACA+AGG - chr8_2:53368975-53368994 Msa1255000:three_prime_UTR 55.0%
TAATTGAGCCGGGAGGTTCG+AGG - chr8_2:53369585-53369604 Msa1255000:intron 55.0%
AATTGAGCCGGGAGGTTCGA+GGG - chr8_2:53369586-53369605 Msa1255000:intron 55.0%
!! ATTAGGAACAGGCACCGAGG+TGG + chr8_2:53369630-53369649 None:intergenic 55.0%
! CGAATTAGGAACAGGCACCG+AGG + chr8_2:53369633-53369652 None:intergenic 55.0%
GTCACTCTATGCCACTCCTG+AGG - chr8_2:53369730-53369749 Msa1255000:intron 55.0%
GTAAGGAGAAGGCGGAAACG+AGG + chr8_2:53369795-53369814 None:intergenic 55.0%
GGCCAATGTACAGGCTAAGC+AGG - chr8_2:53369865-53369884 Msa1255000:intron 55.0%
GAACCCTGAGCCTCTTAAGG+AGG - chr8_2:53369973-53369992 Msa1255000:intron 55.0%
GCTCCTCCTTAAGAGGCTCA+GGG + chr8_2:53369979-53369998 None:intergenic 55.0%
TGCTCCTCCTTAAGAGGCTC+AGG + chr8_2:53369980-53369999 None:intergenic 55.0%
GGAGAGAGATGGTGAGAGTG+AGG - chr8_2:53370129-53370148 Msa1255000:intron 55.0%
! CTTTGCAGAGCGTTCTGTGC+CGG + chr8_2:53370224-53370243 None:intergenic 55.0%
! GTGCTATTGCAGAAGGTGGG+CGG - chr8_2:53370866-53370885 Msa1255000:CDS 55.0%
AAGAGGAACTGCTAGGGCTG+AGG - chr8_2:53370960-53370979 Msa1255000:CDS 55.0%
GATGTCTCAGAGGAACCAGG+AGG - chr8_2:53371077-53371096 Msa1255000:CDS 55.0%
TCCTGATACTCAGTGCCACC+CGG + chr8_2:53371319-53371338 None:intergenic 55.0%
ACCGGGTGGCACTTAGTATC+AGG - chr8_2:53371388-53371407 Msa1255000:intron 55.0%
TCAAACATTGGCCCTACCCG+CGG + chr8_2:53371469-53371488 None:intergenic 55.0%
TACCCCCAACTCCACCAAAG+AGG - chr8_2:53371547-53371566 Msa1255000:CDS 55.0%
ACCCCCAACTCCACCAAAGA+GGG - chr8_2:53371548-53371567 Msa1255000:CDS 55.0%
TCCCTCTTTGGTGGAGTTGG+GGG + chr8_2:53371552-53371571 None:intergenic 55.0%
GCGTGGGGAAGAAGAAGGAG+TGG + chr8_2:53368968-53368987 None:intergenic 60.0%
TATTGCAGAAGGTGGGCGGC+TGG - chr8_2:53370870-53370889 Msa1255000:CDS 60.0%
AGGAACTGCTAGGGCTGAGG+CGG - chr8_2:53370963-53370982 Msa1255000:CDS 60.0%
CAGAGGAACCAGGAGGCAGT+AGG - chr8_2:53371084-53371103 Msa1255000:CDS 60.0%
! ACCGGGTGGCACTGAGTATC+AGG - chr8_2:53371315-53371334 Msa1255000:intron 60.0%
AGCATTGTCTGTCCGCGGGT+AGG - chr8_2:53371454-53371473 Msa1255000:intron 60.0%
GCATTGTCTGTCCGCGGGTA+GGG - chr8_2:53371455-53371474 Msa1255000:intron 60.0%
GCGTGGGGAAGAAGAAGGAG+TGG + chr8_2:53368968-53368987 None:intergenic 60.0%
TATTGCAGAAGGTGGGCGGC+TGG - chr8_2:53370870-53370889 Msa1255000:CDS 60.0%
AGGAACTGCTAGGGCTGAGG+CGG - chr8_2:53370963-53370982 Msa1255000:CDS 60.0%
CAGAGGAACCAGGAGGCAGT+AGG - chr8_2:53371084-53371103 Msa1255000:CDS 60.0%
! ACCGGGTGGCACTGAGTATC+AGG - chr8_2:53371315-53371334 Msa1255000:intron 60.0%
AGCATTGTCTGTCCGCGGGT+AGG - chr8_2:53371454-53371473 Msa1255000:intron 60.0%
GCATTGTCTGTCCGCGGGTA+GGG - chr8_2:53371455-53371474 Msa1255000:intron 60.0%
!! AGGAACAGGCACCGAGGTGG+AGG + chr8_2:53369627-53369646 None:intergenic 65.0%
AAGCGGCGTCACCTCAGGAG+TGG + chr8_2:53369744-53369763 None:intergenic 65.0%
TCTGGAAGCGGCGTCACCTC+AGG + chr8_2:53369749-53369768 None:intergenic 65.0%
ATCACAAACGCCGTGGGCCG+CGG - chr8_2:53369822-53369841 Msa1255000:intron 65.0%
TCTTGAGAAGCCGCGGCCCA+CGG + chr8_2:53369835-53369854 None:intergenic 65.0%
!! AGGAACAGGCACCGAGGTGG+AGG + chr8_2:53369627-53369646 None:intergenic 65.0%
AAGCGGCGTCACCTCAGGAG+TGG + chr8_2:53369744-53369763 None:intergenic 65.0%
TCTGGAAGCGGCGTCACCTC+AGG + chr8_2:53369749-53369768 None:intergenic 65.0%
ATCACAAACGCCGTGGGCCG+CGG - chr8_2:53369822-53369841 Msa1255000:intron 65.0%
TCTTGAGAAGCCGCGGCCCA+CGG + chr8_2:53369835-53369854 None:intergenic 65.0%
TGAGCCGGGAGGTTCGAGGG+CGG - chr8_2:53369589-53369608 Msa1255000:intron 70.0%
TGACCCGCCCTCGAACCTCC+CGG + chr8_2:53369596-53369615 None:intergenic 70.0%
TGAGCCGGGAGGTTCGAGGG+CGG - chr8_2:53369589-53369608 Msa1255000:intron 70.0%
TGACCCGCCCTCGAACCTCC+CGG + chr8_2:53369596-53369615 None:intergenic 70.0%
GAGCCGGGAGGTTCGAGGGC+GGG - chr8_2:53369590-53369609 Msa1255000:intron 75.0%
GAGCCGGGAGGTTCGAGGGC+GGG - chr8_2:53369590-53369609 Msa1255000:intron 75.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 53368834 53372943 53368834 ID=Msa1255000;Name=Msa1255000
chr8_2 mRNA 53368834 53372943 53368834 ID=Msa1255000-mRNA-1;Parent=Msa1255000;Name=Msa1255000-mRNA-1;_AED=0.11;_eAED=0.11;_QI=165|0.75|0.6|1|0.25|0.2|5|544|444
chr8_2 exon 53368834 53369556 53368834 ID=Msa1255000-mRNA-1:exon:16496;Parent=Msa1255000-mRNA-1
chr8_2 exon 53370672 53370896 53370672 ID=Msa1255000-mRNA-1:exon:16495;Parent=Msa1255000-mRNA-1
chr8_2 exon 53370912 53371112 53370912 ID=Msa1255000-mRNA-1:exon:16494;Parent=Msa1255000-mRNA-1
chr8_2 exon 53371497 53372228 53371497 ID=Msa1255000-mRNA-1:exon:16493;Parent=Msa1255000-mRNA-1
chr8_2 exon 53372781 53372943 53372781 ID=Msa1255000-mRNA-1:exon:16492;Parent=Msa1255000-mRNA-1
chr8_2 five_prime_UTR 53372781 53372943 53372781 ID=Msa1255000-mRNA-1:five_prime_utr;Parent=Msa1255000-mRNA-1
chr8_2 five_prime_UTR 53372227 53372228 53372227 ID=Msa1255000-mRNA-1:five_prime_utr;Parent=Msa1255000-mRNA-1
chr8_2 CDS 53371497 53372226 53371497 ID=Msa1255000-mRNA-1:cds;Parent=Msa1255000-mRNA-1
chr8_2 CDS 53370912 53371112 53370912 ID=Msa1255000-mRNA-1:cds;Parent=Msa1255000-mRNA-1
chr8_2 CDS 53370672 53370896 53370672 ID=Msa1255000-mRNA-1:cds;Parent=Msa1255000-mRNA-1
chr8_2 CDS 53369378 53369556 53369378 ID=Msa1255000-mRNA-1:cds;Parent=Msa1255000-mRNA-1
chr8_2 three_prime_UTR 53368834 53369377 53368834 ID=Msa1255000-mRNA-1:three_prime_utr;Parent=Msa1255000-mRNA-1
Gene Sequence

>Msa1255000

ATGCCGACATTTACTGCTATAGCATTTGATAGGTTAATTGAGCCGGGAGGTTCGAGGGCGGGTCAAAAATCTGCCTCCACCTCGGTGCCTGTTCCTAATTCGAAGAAGCTCGAGAGGAGGAGTAGTGAACCAACTGGAACTGCTAGAAAGAAGCCGCCTACTCGACCTCAATTAAAGCCGTCACTCTATGCCACTCCTGAGGTGACGCCGCTTCCAGATTCTCCTCTTCAAGATTCAACTTCCTCGTTTCCGCCTTCTCCTTACATCATCAATCACAAACGCCGTGGGCCGCGGCTTCTCAAGAGTTTCTCGGAGGCCAATGTACAGGCTAAGCAGGAGGTTTGTGAAGAAGGAAATGTTAGTGGTAAGAGCTCTGATACTGTGGTTTCTAGTTCGGCTGGTGATCTCCAAGTTACTTGTGTGAACCCTGAGCCTCTTAAGGAGGAGCAAGATAATGGAGTACAAGATACCAAAGTTAGTATCAGCAATGGTGGCGATGTTGGGCATGAGAACAGAGAAAATGAAAGTAGTAGTGATCCTAATGGAAAGCATGTGGAAAAGCTAGTGCCGTTGAATTTGGAGAGAGATGGTGAGAGTGAGGACTTTTATGATCCACGTGATACTATGAGTTCTATGAGTTTCACAAGTTACACGGATGGAGAGGATAATACCGGCACAGAACGCTCTGCAAAGTATAGCACTGCTGCGGAGTTTTTTGACGCTTGGGAAGAACTCTCTTCTGATGGTGGCACTCAAGGTTCTCTACGACTACGTGATGTTGATACTGAATTGCGTGAAATAAGGTTGAGTCTATTGATGGAGATAGAGAAGCGAAAGCAAATTGAAGAATCAATTAAAAGCATGCAAAGTCAGTGGGAGAGAATCAGAGAAGGGTTATCTTCTGTTGGAATTGTTTTACCTGCAGATCTTAGTGGGCGGCTGGATTCTGATCCTGTAGATGATCTATGTCAGCAGGTTTACATTGCTAGGTTCATATCAAACGCCATTGGAAGAGGAACTGCTAGGGCTGAGGCGGAGACAGAGATGAAAACCCAATTAGACTCAAAGAACTTTGAGATTTCTCGACTATTGGAACGCCTTCATTACTATGAGACCATGAATAGAGAGATGTCTCAGAGGAACCAGGAGGCAGTAGAGACGGCAAGGCGTGAGAGACAAAGAAGGTCTAGGAGGCAGAAATGGATTTGGGGCTCTATTACTACTGCCATTGTACTTGGTACTACAGCAATAGCATGGTCGTATCTCCCATCAAGTAAAGGATCAACATCTGCAGACCATGATGAGGTTTCGGAACACGATGACGGAGCCAACTAA
Protein sequence

>Msa1255000

MPTFTAIAFDRLIEPGGSRAGQKSASTSVPVPNSKKLERRSSEPTGTARKKPPTRPQLKPSLYATPEVTPLPDSPLQDSTSSFPPSPYIINHKRRGPRLLKSFSEANVQAKQEVCEEGNVSGKSSDTVVSSSAGDLQVTCVNPEPLKEEQDNGVQDTKVSISNGGDVGHENRENESSSDPNGKHVEKLVPLNLERDGESEDFYDPRDTMSSMSFTSYTDGEDNTGTERSAKYSTAAEFFDAWEELSSDGGTQGSLRLRDVDTELREIRLSLLMEIEKRKQIEESIKSMQSQWERIREGLSSVGIVLPADLSGRLDSDPVDDLCQQVYIARFISNAIGRGTARAEAETEMKTQLDSKNFEISRLLERLHYYETMNREMSQRNQEAVETARRERQRRSRRQKWIWGSITTAIVLGTTAIAWSYLPSSKGSTSADHDEVSEHDDGAN*