AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1295100

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1295100 MtrunA17_Chr8g0372911 96.214 449 12 1 42 485 1 449 0.0 883
Msa1295100 MtrunA17_Chr5g0404591 59.911 449 163 7 42 484 1 438 3.79e-171 489
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1295100 AT3G50910.1 45.154 454 210 14 42 470 1 440 4.74e-99 305
Msa1295100 AT5G66480.1 38.147 464 242 11 42 481 1 443 6.20e-77 248

Find 158 sgRNAs with CRISPR-Local

Find 350 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAAGTTCTTTGAGTCTAAT+TGG 0.155116 8_3:+53145354 None:intergenic
TTGAGTATGTGCATAAATAT+TGG 0.200080 8_3:-53143845 Msa1295100:three_prime_UTR
AAAGCTAGTGCCGTTGAATT+TGG 0.227432 8_3:-53146248 Msa1295100:CDS
TATTTGTTTGTGAGCGAAAA+TGG 0.228867 8_3:+53147464 None:intergenic
CTCTCGAGCTTCTTCGAATT+AGG 0.273545 8_3:+53146712 None:intergenic
CTTTGAGATTTCTCGACTAT+TGG 0.277457 8_3:-53145336 Msa1295100:CDS
TGCACAACCTGGTAGAATTC+TGG 0.303045 8_3:-53143564 Msa1295100:three_prime_UTR
TAGAATTCTGGTTTCTAATC+TGG 0.308966 8_3:-53143552 Msa1295100:three_prime_UTR
TAGATGGTTGATTAGTAAAA+TGG 0.310380 8_3:-53143783 Msa1295100:three_prime_UTR
TGAGTATGTGCATAAATATT+GGG 0.314929 8_3:-53143844 Msa1295100:three_prime_UTR
CCTTCCACTGCAAGTCTAGA+TGG 0.346743 8_3:-53143799 Msa1295100:three_prime_UTR
TAGGAGGCAGAAATGGATTT+GGG 0.351278 8_3:-53144104 Msa1295100:CDS
TGCTCCTCCTTAAGAGGCTC+AGG 0.353968 8_3:+53146379 None:intergenic
CTGAGACATCTCTCTATTCA+TGG 0.373102 8_3:+53145292 None:intergenic
TAACAAATTACTTTATCATC+AGG 0.377517 8_3:+53143496 None:intergenic
CTTAAGGAGGAGCAAGATAA+TGG 0.382480 8_3:-53146370 Msa1295100:CDS
ATGTTTGTCAGGCATGGTTA+TGG 0.382533 8_3:-53143456 Msa1295100:three_prime_UTR
AGAAGAAGAAGGAGTGGAAA+AGG 0.385777 8_3:+53147402 None:intergenic
AAAGTTCTTTGAGTCTAATT+GGG 0.386719 8_3:+53145355 None:intergenic
ATGCTGAATTGCGTGAAATA+AGG 0.388730 8_3:-53145640 Msa1295100:CDS
GAATCTTGAAGAGGAGAATC+TGG 0.389268 8_3:+53146592 None:intergenic
TTACTGCTATAGCATTTGAT+AGG 0.393299 8_3:-53146795 Msa1295100:CDS
TGCAGACCATGATGAGGTTT+CGG 0.393660 8_3:-53144002 Msa1295100:CDS
CTAGGAGGCAGAAATGGATT+TGG 0.396692 8_3:-53144105 Msa1295100:CDS
ATTACTACTGCCATTGTACT+TGG 0.398122 8_3:-53144076 Msa1295100:CDS
TGATACTGTGGTTTCTAGTT+CGG 0.399939 8_3:-53146431 Msa1295100:CDS
TTATCTTGCTCCTCCTTAAG+AGG 0.404003 8_3:+53146373 None:intergenic
TGTGAACCCTGAGCCTCTTA+AGG 0.422068 8_3:-53146386 Msa1295100:CDS
AGTGTTGGTGGAATATTAGT+TGG 0.424188 8_3:+53143964 None:intergenic
ACACTAACTTTGCCTAGTTA+TGG 0.427381 8_3:-53143946 Msa1295100:three_prime_UTR
ATCAGCAATGGTGGCGATGT+TGG 0.427580 8_3:-53146325 Msa1295100:CDS
GATGTTGATCCTTTACTTGA+TGG 0.428020 8_3:+53144025 None:intergenic
AGCTTCTTCGAATTAGGAAC+AGG 0.428648 8_3:+53146718 None:intergenic
ATAAAGTAATTTGTTAACTC+TGG 0.432687 8_3:-53143489 Msa1295100:three_prime_UTR
GAAGGTCTAGGAGGCAGAAA+TGG 0.437209 8_3:-53144111 Msa1295100:CDS
GCGGCTTCTCAAGAGTTTCT+CGG 0.438607 8_3:-53146515 Msa1295100:CDS
AATAAGGTTGAGTCTATTGA+TGG 0.440745 8_3:-53145624 Msa1295100:CDS
TCAGCAATGGTGGCGATGTT+GGG 0.441562 8_3:-53146324 Msa1295100:CDS
GAAGTATAACCATGTTTGTC+AGG 0.441883 8_3:-53143467 Msa1295100:three_prime_UTR
ACCATTGCTGATACTAACTT+TGG 0.442039 8_3:+53146336 None:intergenic
TCTTCTGATGGTGGCACTCA+AGG 0.443106 8_3:-53145686 Msa1295100:CDS
GAAAGTAGTAGTGATCCTAA+TGG 0.452649 8_3:-53146283 Msa1295100:CDS
AAGCAGGAGGTTTGTGAAGA+AGG 0.454450 8_3:-53146475 Msa1295100:CDS
AGAAGGAGTGGAAAAGGACT+AGG 0.458892 8_3:+53147408 None:intergenic
CTTATTCTGCTCGCAAGAAT+CGG 0.464729 8_3:+53143715 None:intergenic
TGCTTGTGTCATATTTCAGT+TGG 0.465533 8_3:-53143527 Msa1295100:three_prime_UTR
TGTGAAGAAGGAAATGTTAG+TGG 0.471437 8_3:-53146463 Msa1295100:CDS
CTAGGCAAAGTTAGTGTTGG+TGG 0.473411 8_3:+53143952 None:intergenic
CAGGGTTCACACAAGTAACT+TGG 0.473976 8_3:+53146398 None:intergenic
TCTGGAAGCGGCGTCACCTC+AGG 0.478272 8_3:+53146610 None:intergenic
GGCCAATGTACAGGCTAAGC+AGG 0.488598 8_3:-53146491 Msa1295100:CDS
GGAGAGAGATGGTGAGAGTG+AGG 0.489035 8_3:-53146227 Msa1295100:CDS
AATTGAGCCGGGAGGTTCCA+GGG 0.489664 8_3:-53146770 Msa1295100:CDS
CGTTTGTGATTGATGATGTA+AGG 0.495077 8_3:+53146547 None:intergenic
TGGTAAGAGCTCTGATACTG+TGG 0.496455 8_3:-53146443 Msa1295100:CDS
GTGTCATATTTCAGTTGGCT+CGG 0.501568 8_3:-53143522 Msa1295100:three_prime_UTR
ATTTGATAGGTTAATTGAGC+CGG 0.502367 8_3:-53146782 Msa1295100:CDS
GCAATAGCACTAAGATCTGC+AGG 0.502369 8_3:+53145503 None:intergenic
AGAGAAGGGTTATCTTCTGT+TGG 0.502369 8_3:-53145536 Msa1295100:CDS
TAGAGTGACGGCTTTAATTG+AGG 0.505166 8_3:+53146640 None:intergenic
ATGTTGATCCTTTACTTGAT+GGG 0.505404 8_3:+53144026 None:intergenic
CGTGGGGAAGAAGAAGAAGA+AGG 0.509815 8_3:+53147391 None:intergenic
AGGAACAGGCACCGAGGTGG+AGG 0.512021 8_3:+53146732 None:intergenic
ATATCAAACGCCATTGGAAG+AGG 0.513599 8_3:-53145413 Msa1295100:CDS
GTGAGAGACAAAGAAGGTCT+AGG 0.513662 8_3:-53144123 Msa1295100:CDS
TCATGGTCTCATAGTAATGA+AGG 0.513716 8_3:+53145309 None:intergenic
TGACCCGCCCTGGAACCTCC+CGG 0.517221 8_3:+53146763 None:intergenic
TATTGCAGAAGGTGGGCAGC+TGG 0.520501 8_3:-53145486 Msa1295100:intron
CTTTGCAGAGCGTTCTGTGC+CGG 0.520712 8_3:+53146135 None:intergenic
TGCTGACATAGATCATCTAC+AGG 0.523569 8_3:+53145455 None:intergenic
AGGAGGAGTAGTGAACCAAC+TGG 0.523857 8_3:-53146691 Msa1295100:CDS
TTCTTTCTAGCAGTTCCAGT+TGG 0.526672 8_3:+53146676 None:intergenic
TTTCTCGGAGGCCAATGTAC+AGG 0.527126 8_3:-53146500 Msa1295100:CDS
ACTGTGGTTTCTAGTTCGGC+TGG 0.529574 8_3:-53146427 Msa1295100:CDS
TGTAGATGATCTATGTCAGC+AGG 0.531232 8_3:-53145453 Msa1295100:CDS
GTCAGCAGGTTTACATTGCT+AGG 0.534842 8_3:-53145439 Msa1295100:CDS
ATAACCATGTTTGTCAGGCA+TGG 0.538893 8_3:-53143462 Msa1295100:three_prime_UTR
TTTGATAGGTTAATTGAGCC+GGG 0.540203 8_3:-53146781 Msa1295100:CDS
AACAAATTACTTTATCATCA+GGG 0.542841 8_3:+53143497 None:intergenic
TTAAAAGCATGCAAAGTCAG+TGG 0.548243 8_3:-53145568 Msa1295100:CDS
AAATCTCACCTACTGCCTCC+TGG 0.550290 8_3:+53145264 None:intergenic
TTTAATTGAGGTCGAGTAGG+CGG 0.554278 8_3:+53146652 None:intergenic
AGGAACTGCTAGGGCTGAGG+CGG 0.561467 8_3:-53145393 Msa1295100:CDS
TCTCCTCTCCTACCATAACT+AGG 0.563984 8_3:+53143934 None:intergenic
GCTCCTCCTTAAGAGGCTCA+GGG 0.565583 8_3:+53146380 None:intergenic
TCTTGAGAAGCCGCGGCCCA+CGG 0.565601 8_3:+53146524 None:intergenic
TTCTTCCCCACGCAACCACA+AGG 0.568073 8_3:-53147380 Msa1295100:intron
TCGTATCTCCCATCAAGTAA+AGG 0.569425 8_3:-53144034 Msa1295100:CDS
TATGAGTTTCACAAGTTACA+CGG 0.569887 8_3:-53146173 Msa1295100:CDS
GCAAAATAATTTGTACTGAA+CGG 0.570572 8_3:+53143821 None:intergenic
AAGAGGAACTGCTAGGGCTG+AGG 0.574289 8_3:-53145396 Msa1295100:CDS
AGAGATGTCTCAGAGGAACC+AGG 0.576661 8_3:-53145282 Msa1295100:CDS
CCTGTAGAACTCTCTTCTGA+TGG 0.577110 8_3:-53145698 Msa1295100:intron
ACACGCTCTGTGAAATGTAT+CGG 0.577926 8_3:+53143683 None:intergenic
TAAAAGCATGCAAAGTCAGT+GGG 0.579631 8_3:-53145567 Msa1295100:CDS
CCTAGCAGTTCCTCTTCCAA+TGG 0.581191 8_3:+53145403 None:intergenic
GCTATGATGCATGCACAACC+TGG 0.582516 8_3:-53143575 Msa1295100:three_prime_UTR
TGTCATGTTTAGAGACGGCA+AGG 0.583208 8_3:-53144147 Msa1295100:intron
TAACTTTGCCTAGTTATGGT+AGG 0.584015 8_3:-53143942 Msa1295100:three_prime_UTR
GGCTTTAATTGAGGTCGAGT+AGG 0.589089 8_3:+53146649 None:intergenic
CCATCTCTCTCCAAATTCAA+CGG 0.589105 8_3:+53146238 None:intergenic
CAGTGGGAGAGAATCAGAGA+AGG 0.590426 8_3:-53145551 Msa1295100:CDS
GAGGTTTCGGAACACGATGA+CGG 0.590550 8_3:-53143989 Msa1295100:CDS
TCAACCATCTAGACTTGCAG+TGG 0.593282 8_3:+53143795 None:intergenic
GGTTGATTAGTAAAATGGTA+TGG 0.595405 8_3:-53143778 Msa1295100:three_prime_UTR
CACAAGTTACACGGATGGAG+AGG 0.595436 8_3:-53146164 Msa1295100:CDS
TAACTAGGCAAAGTTAGTGT+TGG 0.596793 8_3:+53143949 None:intergenic
TGAAGAGGAGAATCTGGAAG+CGG 0.596863 8_3:+53146598 None:intergenic
CAGAGGAACCAGGAGGCAGT+AGG 0.597788 8_3:-53145272 Msa1295100:intron
GTAGAACTCTCTTCTGATGG+TGG 0.597960 8_3:-53145695 Msa1295100:intron
CCATCTAGACTTGCAGTGGA+AGG 0.597977 8_3:+53143799 None:intergenic
TTGCCTAGTTATGGTAGGAG+AGG 0.598755 8_3:-53143937 Msa1295100:three_prime_UTR
AGTTTCACAAGTTACACGGA+TGG 0.602225 8_3:-53146169 Msa1295100:CDS
AGGTTCATATCAAACGCCAT+TGG 0.605043 8_3:-53145419 Msa1295100:CDS
CTCCTGCTTAGCCTGTACAT+TGG 0.606804 8_3:+53146489 None:intergenic
ATTCGAAGAAGCTCGAGAGG+AGG 0.607096 8_3:-53146708 Msa1295100:CDS
CATTGGAAGAGGAACTGCTA+GGG 0.609694 8_3:-53145402 Msa1295100:CDS
GAGGAAGTTGAATCTTGAAG+AGG 0.609779 8_3:+53146583 None:intergenic
ACGGATGGAGAGGATAATAC+CGG 0.610530 8_3:-53146154 Msa1295100:CDS
TGATCCTAATGGAAAGCATG+TGG 0.611128 8_3:-53146272 Msa1295100:CDS
CGTGTTCCGAAACCTCATCA+TGG 0.613190 8_3:+53143996 None:intergenic
AAGCGGCGTCACCTCAGGAG+TGG 0.619420 8_3:+53146615 None:intergenic
TTGATGATGTAAGGAGAAGG+CGG 0.620549 8_3:+53146556 None:intergenic
ACCAAAGTTAGTATCAGCAA+TGG 0.625369 8_3:-53146337 Msa1295100:CDS
CCATTGGAAGAGGAACTGCT+AGG 0.626094 8_3:-53145403 Msa1295100:CDS
ATCATCAATCACAAACGCCG+TGG 0.627424 8_3:-53146541 Msa1295100:CDS
TGCTGTAGTACCAAGTACAA+TGG 0.632131 8_3:+53144066 None:intergenic
AAAGTTAGTATCAGCAATGG+TGG 0.632304 8_3:-53146334 Msa1295100:CDS
CCGTTGAATTTGGAGAGAGA+TGG 0.634551 8_3:-53146238 Msa1295100:CDS
CTAATTCGAAGAAGCTCGAG+AGG 0.634698 8_3:-53146711 Msa1295100:CDS
AATGCTATAGCAGTAAATGT+CGG 0.635938 8_3:+53146802 None:intergenic
GTAAGGAGAAGGCGGAAACG+AGG 0.636635 8_3:+53146564 None:intergenic
AGGAGGCAGAAATGGATTTG+GGG 0.642757 8_3:-53144103 Msa1295100:CDS
ATAACCATGCCTGACAAACA+TGG 0.643269 8_3:+53143458 None:intergenic
TCAGGAGTGGCATAGAGTGA+CGG 0.645583 8_3:+53146628 None:intergenic
TGCAAAGTATAGCACTGCTG+CGG 0.648345 8_3:-53146119 Msa1295100:CDS
GAACCCTGAGCCTCTTAAGG+AGG 0.648635 8_3:-53146383 Msa1295100:CDS
AGTGGGAGAGAATCAGAGAA+GGG 0.650304 8_3:-53145550 Msa1295100:CDS
TGATTGATGATGTAAGGAGA+AGG 0.653569 8_3:+53146553 None:intergenic
ATTAGGAACAGGCACCGAGG+TGG 0.660865 8_3:+53146729 None:intergenic
TCATCAATCACAAACGCCGT+GGG 0.662353 8_3:-53146540 Msa1295100:CDS
TGAGCCGGGAGGTTCCAGGG+CGG 0.662672 8_3:-53146767 Msa1295100:CDS
TGGTATTTATCTTATGAACG+TGG 0.662700 8_3:+53143754 None:intergenic
TTAGAAACCAGAATTCTACC+AGG 0.664028 8_3:+53143557 None:intergenic
AACATCTGCAGACCATGATG+AGG 0.664570 8_3:-53144008 Msa1295100:CDS
AGAGACAAAGAAGGTCTAGG+AGG 0.667738 8_3:-53144120 Msa1295100:CDS
TTGGTACTACAGCAATAGCA+TGG 0.668403 8_3:-53144057 Msa1295100:CDS
CAAGGCGTGAGAGACAAAGA+AGG 0.669676 8_3:-53144129 Msa1295100:CDS
GTCACTCTATGCCACTCCTG+AGG 0.670762 8_3:-53146626 Msa1295100:CDS
CAATGTACAGGCTAAGCAGG+AGG 0.671371 8_3:-53146488 Msa1295100:CDS
GAGAAACTCTTGAGAAGCCG+CGG 0.680768 8_3:+53146517 None:intergenic
TGATGAATTAGAATGCTCGA+AGG 0.685291 8_3:+53143642 None:intergenic
TGAATAGAGAGATGTCTCAG+AGG 0.688163 8_3:-53145289 Msa1295100:CDS
GCTTCTCAAGAGTTTCTCGG+AGG 0.702405 8_3:-53146512 Msa1295100:CDS
ATAGAACTCATAGTATCACG+TGG 0.720038 8_3:+53146193 None:intergenic
CGAATTAGGAACAGGCACCG+AGG 0.730067 8_3:+53146726 None:intergenic
GATGTCTCAGAGGAACCAGG+AGG 0.739860 8_3:-53145279 Msa1295100:CDS
GATAGGTTAATTGAGCCGGG+AGG 0.794072 8_3:-53146778 Msa1295100:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTTTTTTTTTT+GGG + chr8_3:53144211-53144230 None:intergenic 0.0%
!!! TTTTTTTTTTTTTTTTTTTT+TGG + chr8_3:53144211-53144230 None:intergenic 0.0%
!! AAAAAAAAAAAAAAAAAAAT+AGG - chr8_3:53144220-53144239 Msa1295100:intron 0.0%
!! AAAAAAAAAAAAAAAAAATA+GGG - chr8_3:53144221-53144240 Msa1295100:intron 0.0%
!!! ATAATTTTTTGTTTTGAATT+GGG + chr8_3:53144480-53144499 None:intergenic 10.0%
!!! AATAATTTTTTGTTTTGAAT+TGG + chr8_3:53144481-53144500 None:intergenic 10.0%
!! ATTTAAATTTAATTCAATCA+TGG - chr8_3:53144807-53144826 Msa1295100:intron 10.0%
!!! TATTTAAATTTAATTAGCTT+TGG - chr8_3:53144875-53144894 Msa1295100:intron 10.0%
!!! TTTTGTTTTTCTAAATATTT+TGG - chr8_3:53147293-53147312 Msa1295100:intron 10.0%
!! ATATAGAAAATAATGTTTGT+TGG - chr8_3:53143635-53143654 Msa1295100:three_prime_UTR 15.0%
!! TATAGAAAATAATGTTTGTT+GGG - chr8_3:53143636-53143655 Msa1295100:three_prime_UTR 15.0%
!! TATTATGTAAATGCTTAAAA+TGG - chr8_3:53143760-53143779 Msa1295100:three_prime_UTR 15.0%
!! ATCTTAATAATATACAAACA+TGG + chr8_3:53143881-53143900 None:intergenic 15.0%
!!! TTTTTTTTTTTTTTTTGGGA+GGG + chr8_3:53144207-53144226 None:intergenic 15.0%
!!! TTTTTTTTTTTTTTTTTGGG+AGG + chr8_3:53144208-53144227 None:intergenic 15.0%
!! AAAAAAAAAAAAAAATAGGG+TGG - chr8_3:53144224-53144243 Msa1295100:intron 15.0%
!! AAAAAAAAAAAAAATAGGGT+GGG - chr8_3:53144225-53144244 Msa1295100:intron 15.0%
!!! TAATTTTTTGTTTTGAATTG+GGG + chr8_3:53144479-53144498 None:intergenic 15.0%
!! AAAGATAGAAAAATTGAAAT+CGG + chr8_3:53144572-53144591 None:intergenic 15.0%
!!! TATCTTTTTTTTTTAGCTTT+TGG - chr8_3:53144585-53144604 Msa1295100:intron 15.0%
!! TTAAAATATGAAAAGCTAAA+TGG + chr8_3:53145820-53145839 None:intergenic 15.0%
!!! CATTTTAAATGCATAATAAT+GGG + chr8_3:53146688-53146707 None:intergenic 15.0%
!!! TCATTTTAAATGCATAATAA+TGG + chr8_3:53146689-53146708 None:intergenic 15.0%
!! TTATTTACATAATCAAACAT+TGG + chr8_3:53146905-53146924 None:intergenic 15.0%
!! ATGTAATATACTATGTTAAT+TGG - chr8_3:53146926-53146945 Msa1295100:intron 15.0%
!! TGTAATATACTATGTTAATT+GGG - chr8_3:53146927-53146946 Msa1295100:intron 15.0%
!! ACTAAACAATAAATGATAAA+CGG + chr8_3:53147140-53147159 None:intergenic 15.0%
!!! ATTTGAATTTTGAATTGAAG+AGG - chr8_3:53143705-53143724 Msa1295100:three_prime_UTR 20.0%
!!! TTTGAATTTTGAATTGAAGA+GGG - chr8_3:53143706-53143725 Msa1295100:three_prime_UTR 20.0%
!! AGAACTAGAAGAAATATATT+TGG - chr8_3:53144073-53144092 Msa1295100:CDS 20.0%
!!! TTTTTTTTTTTTTTTGGGAG+GGG + chr8_3:53144206-53144225 None:intergenic 20.0%
!! AAAAAAAAAAAAATAGGGTG+GGG - chr8_3:53144226-53144245 Msa1295100:intron 20.0%
!! ATGAATAAATAAAAACCTTG+TGG + chr8_3:53144418-53144437 None:intergenic 20.0%
!! ATTCAATAGAGTTTGTAATT+CGG - chr8_3:53145781-53145800 Msa1295100:intron 20.0%
!! ATCAAATCAAAGACAAATTT+AGG + chr8_3:53145917-53145936 None:intergenic 20.0%
!!! AATGACAAATTTAGGATATT+TGG + chr8_3:53145942-53145961 None:intergenic 20.0%
!! GATAAATCAATGACAAATTT+AGG + chr8_3:53145950-53145969 None:intergenic 20.0%
!! ATATAATTATGATAAAGCGA+AGG - chr8_3:53145988-53146007 Msa1295100:intron 20.0%
!!! ATAATAATGGGAATTTTTGT+TGG + chr8_3:53146676-53146695 None:intergenic 20.0%
!! CTACATTTCATAATAAATGA+TGG + chr8_3:53147020-53147039 None:intergenic 20.0%
!!! CATTTATTGTTTAGTTTTTG+TGG - chr8_3:53147145-53147164 Msa1295100:intron 20.0%
!!! TGATTTGAACATAATTTTAG+TGG - chr8_3:53147443-53147462 Msa1295100:CDS 20.0%
!!! GATTTGAACATAATTTTAGT+GGG - chr8_3:53147444-53147463 Msa1295100:CDS 20.0%
!!! ATACTTCAATTACAATTTTG+CGG - chr8_3:53147908-53147927 Msa1295100:intron 20.0%
!! AACAAATTACTTTATCATCA+GGG + chr8_3:53148286-53148305 None:intergenic 20.0%
!! TAACAAATTACTTTATCATC+AGG + chr8_3:53148287-53148306 None:intergenic 20.0%
!!! ATAAAGTAATTTGTTAACTC+TGG - chr8_3:53148291-53148310 Msa1295100:intron 20.0%
! ATATTGTTGCACATGATAAA+TGG - chr8_3:53143928-53143947 Msa1295100:three_prime_UTR 25.0%
!!! CATGATAAATGGATTGAAAT+TGG - chr8_3:53143939-53143958 Msa1295100:three_prime_UTR 25.0%
! ATAATAAGAAACGAGAAATG+AGG + chr8_3:53144455-53144474 None:intergenic 25.0%
! GAAGAAAAGGAAAATGAAAA+CGG + chr8_3:53144650-53144669 None:intergenic 25.0%
!!! AATTATGATTTGTTTCTGTC+CGG - chr8_3:53144697-53144716 Msa1295100:intron 25.0%
! TCCTCAATTTGTATTTGTTT+AGG - chr8_3:53144762-53144781 Msa1295100:intron 25.0%
! ACCTAAACAAATACAAATTG+AGG + chr8_3:53144766-53144785 None:intergenic 25.0%
! AAAGTTCTTTGAGTCTAATT+GGG + chr8_3:53146428-53146447 None:intergenic 25.0%
!! AAGATATATGGTTTGTCATT+TGG + chr8_3:53147114-53147133 None:intergenic 25.0%
! GTAATAATACTAGTGAAGTA+TGG - chr8_3:53147179-53147198 Msa1295100:intron 25.0%
! ATGATATGTAGATAGGTAAA+TGG + chr8_3:53147409-53147428 None:intergenic 25.0%
!!! CACAGATTTTTAATTCTCTA+GGG - chr8_3:53147473-53147492 Msa1295100:CDS 25.0%
! GACATATATTTAAGCAAACA+AGG + chr8_3:53147560-53147579 None:intergenic 25.0%
! ATGACATAAATGAGAAAAAG+TGG + chr8_3:53147609-53147628 None:intergenic 25.0%
! TTGAGTATGTGCATAAATAT+TGG - chr8_3:53147935-53147954 Msa1295100:intron 25.0%
! TGAGTATGTGCATAAATATT+GGG - chr8_3:53147936-53147955 Msa1295100:intron 25.0%
!! GCAAAATAATTTGTACTGAA+CGG + chr8_3:53147962-53147981 None:intergenic 25.0%
! TAGATGGTTGATTAGTAAAA+TGG - chr8_3:53147997-53148016 Msa1295100:intron 25.0%
! TCGGTAAGAAAAAAACTATA+TGG + chr8_3:53148049-53148068 None:intergenic 25.0%
!!! TTATTTTTATGTGATGCAGC+CGG - chr8_3:53143444-53143463 Msa1295100:three_prime_UTR 30.0%
AGAAAGAAGATAGAGAGAAA+AGG - chr8_3:53143483-53143502 Msa1295100:three_prime_UTR 30.0%
GAAAGAAGATAGAGAGAAAA+GGG - chr8_3:53143484-53143503 Msa1295100:three_prime_UTR 30.0%
GATAGAAAGTGAGGAAAAAA+AGG - chr8_3:53143581-53143600 Msa1295100:three_prime_UTR 30.0%
AAAAGGAAAGAAGTTTAGAG+TGG - chr8_3:53143598-53143617 Msa1295100:three_prime_UTR 30.0%
GTTGAAGATTTATATTCCAC+AGG - chr8_3:53144285-53144304 Msa1295100:intron 30.0%
TATTTGTTTGTGAGCGAAAA+TGG + chr8_3:53144319-53144338 None:intergenic 30.0%
AGGAAAAAAGAAGAAGAAGA+AGG + chr8_3:53144355-53144374 None:intergenic 30.0%
CAACAAAACAGAAGAAGAAA+AGG + chr8_3:53144663-53144682 None:intergenic 30.0%
! CTTTTCTTCTTCTGTTTTGT+TGG - chr8_3:53144661-53144680 Msa1295100:intron 30.0%
AATGCTATAGCAGTAAATGT+CGG + chr8_3:53144981-53145000 None:intergenic 30.0%
TTACTGCTATAGCATTTGAT+AGG - chr8_3:53144985-53145004 Msa1295100:intron 30.0%
ATTTGATAGGTTAATTGAGC+CGG - chr8_3:53144998-53145017 Msa1295100:intron 30.0%
TATGAGTTTCACAAGTTACA+CGG - chr8_3:53145607-53145626 Msa1295100:CDS 30.0%
TCTATTGAATAAAACATCCG+TGG + chr8_3:53145771-53145790 None:intergenic 30.0%
!!! GTCGTTTTTCTCATATTTTC+TGG - chr8_3:53145847-53145866 Msa1295100:intron 30.0%
ATGATAAAGCGAAGGAAAAA+AGG - chr8_3:53145996-53146015 Msa1295100:intron 30.0%
! AAAAGGATATCTGGATGTTT+TGG - chr8_3:53146013-53146032 Msa1295100:intron 30.0%
! AAAGGATATCTGGATGTTTT+GGG - chr8_3:53146014-53146033 Msa1295100:intron 30.0%
AATAAGGTTGAGTCTATTGA+TGG - chr8_3:53146156-53146175 Msa1295100:CDS 30.0%
CAAAGTTCTTTGAGTCTAAT+TGG + chr8_3:53146429-53146448 None:intergenic 30.0%
TGTTCAAGAGTTATAAAGAC+CGG - chr8_3:53146794-53146813 Msa1295100:CDS 30.0%
ATCAGGATTATGGTAATTGA+TGG - chr8_3:53146756-53146775 Msa1295100:CDS 30.0%
! GATTATGGTAATTGATGGTA+TGG - chr8_3:53146834-53146853 Msa1295100:intron 30.0%
GATAAACGGTTGAAGATATA+TGG + chr8_3:53147126-53147145 None:intergenic 30.0%
! AGTTTTTGTGGATTTGAACT+TGG - chr8_3:53147157-53147176 Msa1295100:intron 30.0%
!!! TTCCTTCTGATCTTTGTTTT+AGG - chr8_3:53147330-53147349 Msa1295100:intron 30.0%
AACCTAAAACAAAGATCAGA+AGG + chr8_3:53147335-53147354 None:intergenic 30.0%
TCATGTAACAACACATTTGT+AGG - chr8_3:53147354-53147373 Msa1295100:intron 30.0%
ACCTATCTACATATCATGTT+AGG - chr8_3:53147412-53147431 Msa1295100:CDS 30.0%
CCTAGAGAATTAAAAATCTG+TGG + chr8_3:53147475-53147494 None:intergenic 30.0%
!! CCACAGATTTTTAATTCTCT+AGG - chr8_3:53147472-53147491 Msa1295100:CDS 30.0%
AAGCAGGCTAAAAATAAACT+AGG + chr8_3:53147582-53147601 None:intergenic 30.0%
! TTTTCTGTCATGTTTAGAGA+CGG - chr8_3:53147628-53147647 Msa1295100:intron 30.0%
ATGTTGATCCTTTACTTGAT+GGG + chr8_3:53147757-53147776 None:intergenic 30.0%
! AAGTTTTACATGCTACTATG+TGG - chr8_3:53147873-53147892 Msa1295100:intron 30.0%
GGTTGATTAGTAAAATGGTA+TGG - chr8_3:53148002-53148021 Msa1295100:intron 30.0%
TGGTATTTATCTTATGAACG+TGG + chr8_3:53148029-53148048 None:intergenic 30.0%
!! TAGAATTCTGGTTTCTAATC+TGG - chr8_3:53148228-53148247 Msa1295100:intron 30.0%
ATAGAGAGAAAAGGGTTTCA+TGG - chr8_3:53143492-53143511 Msa1295100:three_prime_UTR 35.0%
AGAAAGTTATGTTGAGTGTG+TGG - chr8_3:53143555-53143574 Msa1295100:three_prime_UTR 35.0%
TTAGAGTGGATGAGAGATAA+AGG - chr8_3:53143612-53143631 Msa1295100:three_prime_UTR 35.0%
GTTGGGATATGAGAAAAAGT+AGG - chr8_3:53143653-53143672 Msa1295100:three_prime_UTR 35.0%
GGATATGAGAAAAAGTAGGA+GGG - chr8_3:53143657-53143676 Msa1295100:three_prime_UTR 35.0%
! AATGATGATGTGACATGTAG+TGG - chr8_3:53143803-53143822 Msa1295100:three_prime_UTR 35.0%
TCTTCTTAATGTGTGTTGTG+TGG + chr8_3:53144053-53144072 None:intergenic 35.0%
ACCTAAAAGAAAAGCAGAGA+AGG - chr8_3:53144167-53144186 Msa1295100:intron 35.0%
!! ACCTTCTCTGCTTTTCTTTT+AGG + chr8_3:53144171-53144190 None:intergenic 35.0%
!!! TTTTTTTTGGGAGGGGAATT+TGG + chr8_3:53144199-53144218 None:intergenic 35.0%
AAAGAGAGAGATAGTTGTTG+TGG - chr8_3:53144253-53144272 Msa1295100:intron 35.0%
AGATTTATATTCCACAGGTG+TGG - chr8_3:53144290-53144309 Msa1295100:intron 35.0%
GATTTATATTCCACAGGTGT+GGG - chr8_3:53144291-53144310 Msa1295100:intron 35.0%
TTTGATAGGTTAATTGAGCC+GGG - chr8_3:53144999-53145018 Msa1295100:intron 35.0%
!! TGATTGATGATGTAAGGAGA+AGG + chr8_3:53145230-53145249 None:intergenic 35.0%
!! CGTTTGTGATTGATGATGTA+AGG + chr8_3:53145236-53145255 None:intergenic 35.0%
TGTGAAGAAGGAAATGTTAG+TGG - chr8_3:53145317-53145336 Msa1295100:CDS 35.0%
!! TGATACTGTGGTTTCTAGTT+CGG - chr8_3:53145349-53145368 Msa1295100:CDS 35.0%
ACCAAAGTTAGTATCAGCAA+TGG - chr8_3:53145443-53145462 Msa1295100:CDS 35.0%
ACCATTGCTGATACTAACTT+TGG + chr8_3:53145447-53145466 None:intergenic 35.0%
AAAGTTAGTATCAGCAATGG+TGG - chr8_3:53145446-53145465 Msa1295100:CDS 35.0%
GAAAGTAGTAGTGATCCTAA+TGG - chr8_3:53145497-53145516 Msa1295100:intron 35.0%
! TTTTCCACATGCTTTCCATT+AGG + chr8_3:53145515-53145534 None:intergenic 35.0%
ATAGAACTCATAGTATCACG+TGG + chr8_3:53145590-53145609 None:intergenic 35.0%
TTGGGAAGGTAAAATAAACC+AGG - chr8_3:53145697-53145716 Msa1295100:intron 35.0%
GAACTAAAACAGAGTTAACC+TGG + chr8_3:53145718-53145737 None:intergenic 35.0%
TTGTAATTCGGCATGATGTT+AGG - chr8_3:53145793-53145812 Msa1295100:intron 35.0%
ATCTCATAGATTCGCTTACT+TGG - chr8_3:53146045-53146064 Msa1295100:intron 35.0%
ATGCTGAATTGCGTGAAATA+AGG - chr8_3:53146140-53146159 Msa1295100:CDS 35.0%
! TTAAAAGCATGCAAAGTCAG+TGG - chr8_3:53146212-53146231 Msa1295100:CDS 35.0%
! TAAAAGCATGCAAAGTCAGT+GGG - chr8_3:53146213-53146232 Msa1295100:CDS 35.0%
!! CTTTGAGATTTCTCGACTAT+TGG - chr8_3:53146444-53146463 Msa1295100:CDS 35.0%
TCATGGTCTCATAGTAATGA+AGG + chr8_3:53146474-53146493 None:intergenic 35.0%
TGTTCAAGAGTTGTAAACAC+CGG - chr8_3:53146721-53146740 Msa1295100:CDS 35.0%
GTTCAAGAGTTATAAAGACC+GGG - chr8_3:53146795-53146814 Msa1295100:CDS 35.0%
GATCAGAAGGAAAAGAGATA+CGG + chr8_3:53147322-53147341 None:intergenic 35.0%
GCCTAACATGATATGTAGAT+AGG + chr8_3:53147416-53147435 None:intergenic 35.0%
! AGCGATATTCTGTTTTCTGT+TGG - chr8_3:53147532-53147551 Msa1295100:intron 35.0%
ATTACTACTGCCATTGTACT+TGG - chr8_3:53147704-53147723 Msa1295100:intron 35.0%
GATGTTGATCCTTTACTTGA+TGG + chr8_3:53147758-53147777 None:intergenic 35.0%
!! AGTGTTGGTGGAATATTAGT+TGG + chr8_3:53147819-53147838 None:intergenic 35.0%
TAACTAGGCAAAGTTAGTGT+TGG + chr8_3:53147834-53147853 None:intergenic 35.0%
ACACTAACTTTGCCTAGTTA+TGG - chr8_3:53147834-53147853 Msa1295100:intron 35.0%
TAACTTTGCCTAGTTATGGT+AGG - chr8_3:53147838-53147857 Msa1295100:intron 35.0%
TGATGAATTAGAATGCTCGA+AGG + chr8_3:53148141-53148160 None:intergenic 35.0%
TTAGAAACCAGAATTCTACC+AGG + chr8_3:53148226-53148245 None:intergenic 35.0%
TGCTTGTGTCATATTTCAGT+TGG - chr8_3:53148253-53148272 Msa1295100:intron 35.0%
GAAGTATAACCATGTTTGTC+AGG - chr8_3:53148313-53148332 Msa1295100:intron 35.0%
TCTTCATTTCCGATCAACTC+CGG + chr8_3:53143466-53143485 None:intergenic 40.0%
AGAGAAAAGGGTTTCATGGA+GGG - chr8_3:53143496-53143515 Msa1295100:three_prime_UTR 40.0%
GGGATATGAGAAAAAGTAGG+AGG - chr8_3:53143656-53143675 Msa1295100:three_prime_UTR 40.0%
AGTGCGTCATTGATACAACA+AGG + chr8_3:53143982-53144001 None:intergenic 40.0%
TGTTGTATCAATGACGCACT+TGG - chr8_3:53143982-53144001 Msa1295100:CDS 40.0%
AGAAGAAGAAGGAGTGGAAA+AGG + chr8_3:53144381-53144400 None:intergenic 40.0%
TAAAAACCTTGTGGTTGCGT+GGG + chr8_3:53144409-53144428 None:intergenic 40.0%
ATAAAAACCTTGTGGTTGCG+TGG + chr8_3:53144410-53144429 None:intergenic 40.0%
GAACCTAAGATGAATTCGTG+CGG + chr8_3:53144535-53144554 None:intergenic 40.0%
!! TTGTTTCTGTCCGGTGTATT+CGG - chr8_3:53144706-53144725 Msa1295100:intron 40.0%
AGCTTCTTCGAATTAGGAAC+AGG + chr8_3:53145065-53145084 None:intergenic 40.0%
! TTCTTTCTAGCAGTTCCAGT+TGG + chr8_3:53145107-53145126 None:intergenic 40.0%
TTTAATTGAGGTCGAGTAGG+CGG + chr8_3:53145131-53145150 None:intergenic 40.0%
! TAGAGTGACGGCTTTAATTG+AGG + chr8_3:53145143-53145162 None:intergenic 40.0%
GAATCTTGAAGAGGAGAATC+TGG + chr8_3:53145191-53145210 None:intergenic 40.0%
GAGGAAGTTGAATCTTGAAG+AGG + chr8_3:53145200-53145219 None:intergenic 40.0%
!! TTGATGATGTAAGGAGAAGG+CGG + chr8_3:53145227-53145246 None:intergenic 40.0%
TTATCTTGCTCCTCCTTAAG+AGG + chr8_3:53145410-53145429 None:intergenic 40.0%
CTTAAGGAGGAGCAAGATAA+TGG - chr8_3:53145410-53145429 Msa1295100:CDS 40.0%
! TGATCCTAATGGAAAGCATG+TGG - chr8_3:53145508-53145527 Msa1295100:intron 40.0%
! AAAGCTAGTGCCGTTGAATT+TGG - chr8_3:53145532-53145551 Msa1295100:CDS 40.0%
CCATCTCTCTCCAAATTCAA+CGG + chr8_3:53145545-53145564 None:intergenic 40.0%
AGTTTCACAAGTTACACGGA+TGG - chr8_3:53145611-53145630 Msa1295100:CDS 40.0%
TGCAATTGCACATGTGCATT+TGG - chr8_3:53145740-53145759 Msa1295100:intron 40.0%
ATGTGCATTTGGACAAACCA+CGG - chr8_3:53145751-53145770 Msa1295100:intron 40.0%
GCGAAGGAAAAAAGGATATC+TGG - chr8_3:53146004-53146023 Msa1295100:intron 40.0%
AGAGAAGGGTTATCTTCTGT+TGG - chr8_3:53146244-53146263 Msa1295100:CDS 40.0%
! GATCTTAGTGCTATTGCAGA+AGG - chr8_3:53146283-53146302 Msa1295100:CDS 40.0%
! TTAGTGCTATTGCAGAAGGT+GGG - chr8_3:53146287-53146306 Msa1295100:CDS 40.0%
TGCTGACATAGATCATCTAC+AGG + chr8_3:53146328-53146347 None:intergenic 40.0%
TGTAGATGATCTATGTCAGC+AGG - chr8_3:53146327-53146346 Msa1295100:CDS 40.0%
AGGTTCATATCAAACGCCAT+TGG - chr8_3:53146361-53146380 Msa1295100:CDS 40.0%
ATATCAAACGCCATTGGAAG+AGG - chr8_3:53146367-53146386 Msa1295100:CDS 40.0%
CTGAGACATCTCTCTATTCA+TGG + chr8_3:53146491-53146510 None:intergenic 40.0%
TGAATAGAGAGATGTCTCAG+AGG - chr8_3:53146491-53146510 Msa1295100:CDS 40.0%
CATCTATGTATCTCCTAGCT+AGG - chr8_3:53146624-53146643 Msa1295100:CDS 40.0%
TATGTATCTCCTAGCTAGGA+CGG - chr8_3:53146628-53146647 Msa1295100:CDS 40.0%
TAAATAAACCCGTCCTAGCT+AGG + chr8_3:53146640-53146659 None:intergenic 40.0%
GTTCAAGAGTTGTAAACACC+GGG - chr8_3:53146722-53146741 Msa1295100:CDS 40.0%
GGCACTTAGTATCAGGATTA+TGG - chr8_3:53146819-53146838 Msa1295100:intron 40.0%
! GTTGGGGGTATAGTTTATAG+TGG + chr8_3:53146961-53146980 None:intergenic 40.0%
TCTTCGAACAATTCCCTCTT+TGG + chr8_3:53146988-53147007 None:intergenic 40.0%
TGGCATGTACTATAATCGCA+AGG - chr8_3:53147199-53147218 Msa1295100:intron 40.0%
! TAGGAGGCAGAAATGGATTT+GGG - chr8_3:53147676-53147695 Msa1295100:intron 40.0%
TGCTGTAGTACCAAGTACAA+TGG + chr8_3:53147717-53147736 None:intergenic 40.0%
TTGGTACTACAGCAATAGCA+TGG - chr8_3:53147723-53147742 Msa1295100:intron 40.0%
TCGTATCTCCCATCAAGTAA+AGG - chr8_3:53147746-53147765 Msa1295100:intron 40.0%
CTTATTCTGCTCGCAAGAAT+CGG + chr8_3:53148068-53148087 None:intergenic 40.0%
ACACGCTCTGTGAAATGTAT+CGG + chr8_3:53148100-53148119 None:intergenic 40.0%
GTGTCATATTTCAGTTGGCT+CGG - chr8_3:53148258-53148277 Msa1295100:intron 40.0%
ATAACCATGTTTGTCAGGCA+TGG - chr8_3:53148318-53148337 Msa1295100:intron 40.0%
ATAACCATGCCTGACAAACA+TGG + chr8_3:53148325-53148344 None:intergenic 40.0%
ATGTTTGTCAGGCATGGTTA+TGG - chr8_3:53148324-53148343 Msa1295100:intron 40.0%
GAGAGAAAAGGGTTTCATGG+AGG - chr8_3:53143495-53143514 Msa1295100:three_prime_UTR 45.0%
AAAAGGGTTTCATGGAGGGA+GGG - chr8_3:53143500-53143519 Msa1295100:three_prime_UTR 45.0%
AAAGAAACCGAGTGAGTGTG+AGG - chr8_3:53143525-53143544 Msa1295100:three_prime_UTR 45.0%
CTTTCTTCCTCACACTCACT+CGG + chr8_3:53143535-53143554 None:intergenic 45.0%
GTGTGGTGAGATAGAAAGTG+AGG - chr8_3:53143572-53143591 Msa1295100:three_prime_UTR 45.0%
ATGTGACATGTAGTGGCTTG+AGG - chr8_3:53143810-53143829 Msa1295100:three_prime_UTR 45.0%
! TATCAATGACGCACTTGGTG+AGG - chr8_3:53143987-53144006 Msa1295100:CDS 45.0%
!! TTTTTGGGAGGGGAATTTGG+TGG + chr8_3:53144196-53144215 None:intergenic 45.0%
AGAAGGAGTGGAAAAGGACT+AGG + chr8_3:53144375-53144394 None:intergenic 45.0%
GGAAGAAGAAGAAGAAGGAG+TGG + chr8_3:53144387-53144406 None:intergenic 45.0%
AAAAACCTTGTGGTTGCGTG+GGG + chr8_3:53144408-53144427 None:intergenic 45.0%
TTGCCGCACGAATTCATCTT+AGG - chr8_3:53144529-53144548 Msa1295100:intron 45.0%
ACAACCCTAACCGAATACAC+CGG + chr8_3:53144719-53144738 None:intergenic 45.0%
TCAAAAATCTGCCTCCACCT+CGG - chr8_3:53145037-53145056 Msa1295100:intron 45.0%
CTCTCGAGCTTCTTCGAATT+AGG + chr8_3:53145071-53145090 None:intergenic 45.0%
CTAATTCGAAGAAGCTCGAG+AGG - chr8_3:53145069-53145088 Msa1295100:intron 45.0%
! GGCTTTAATTGAGGTCGAGT+AGG + chr8_3:53145134-53145153 None:intergenic 45.0%
TGAAGAGGAGAATCTGGAAG+CGG + chr8_3:53145185-53145204 None:intergenic 45.0%
ATCATCAATCACAAACGCCG+TGG - chr8_3:53145239-53145258 Msa1295100:intron 45.0%
TCATCAATCACAAACGCCGT+GGG - chr8_3:53145240-53145259 Msa1295100:intron 45.0%
AAGCAGGAGGTTTGTGAAGA+AGG - chr8_3:53145305-53145324 Msa1295100:CDS 45.0%
! TGGTAAGAGCTCTGATACTG+TGG - chr8_3:53145337-53145356 Msa1295100:CDS 45.0%
CAGGGTTCACACAAGTAACT+TGG + chr8_3:53145385-53145404 None:intergenic 45.0%
CCGTTGAATTTGGAGAGAGA+TGG - chr8_3:53145542-53145561 Msa1295100:CDS 45.0%
ACGGATGGAGAGGATAATAC+CGG - chr8_3:53145626-53145645 Msa1295100:CDS 45.0%
TGCAAAGTATAGCACTGCTG+CGG - chr8_3:53145661-53145680 Msa1295100:CDS 45.0%
!!! TGCGGAGTTTTTTGACGCTT+GGG - chr8_3:53145679-53145698 Msa1295100:CDS 45.0%
!!! GAGTTTTTTGACGCTTGGGA+AGG - chr8_3:53145683-53145702 Msa1295100:CDS 45.0%
CCATCAGAAGAGAGTTCTAC+AGG + chr8_3:53146085-53146104 None:intergenic 45.0%
CCTGTAGAACTCTCTTCTGA+TGG - chr8_3:53146082-53146101 Msa1295100:intron 45.0%
GTAGAACTCTCTTCTGATGG+TGG - chr8_3:53146085-53146104 Msa1295100:intron 45.0%
AGTGGGAGAGAATCAGAGAA+GGG - chr8_3:53146230-53146249 Msa1295100:CDS 45.0%
GCAATAGCACTAAGATCTGC+AGG + chr8_3:53146280-53146299 None:intergenic 45.0%
! CTTAGTGCTATTGCAGAAGG+TGG - chr8_3:53146286-53146305 Msa1295100:CDS 45.0%
GTCAGCAGGTTTACATTGCT+AGG - chr8_3:53146341-53146360 Msa1295100:CDS 45.0%
CATTGGAAGAGGAACTGCTA+GGG - chr8_3:53146378-53146397 Msa1295100:CDS 45.0%
ATGTATCTCCTAGCTAGGAC+GGG - chr8_3:53146629-53146648 Msa1295100:CDS 45.0%
! GGCACTGAGTATCAGGATTA+TGG - chr8_3:53146746-53146765 Msa1295100:CDS 45.0%
CAAGAGTTATAAAGACCGGG+TGG - chr8_3:53146798-53146817 Msa1295100:CDS 45.0%
ATTCCCTCTTTGGTGGAGTT+GGG + chr8_3:53146978-53146997 None:intergenic 45.0%
AATTCCCTCTTTGGTGGAGT+TGG + chr8_3:53146979-53146998 None:intergenic 45.0%
TCGAACAATTCCCTCTTTGG+TGG + chr8_3:53146985-53147004 None:intergenic 45.0%
GAGAAAAAGTGGAGCAAAGC+AGG + chr8_3:53147598-53147617 None:intergenic 45.0%
TGTCATGTTTAGAGACGGCA+AGG - chr8_3:53147633-53147652 Msa1295100:intron 45.0%
GTGAGAGACAAAGAAGGTCT+AGG - chr8_3:53147657-53147676 Msa1295100:intron 45.0%
AGAGACAAAGAAGGTCTAGG+AGG - chr8_3:53147660-53147679 Msa1295100:intron 45.0%
! CTAGGAGGCAGAAATGGATT+TGG - chr8_3:53147675-53147694 Msa1295100:intron 45.0%
! AGGAGGCAGAAATGGATTTG+GGG - chr8_3:53147677-53147696 Msa1295100:intron 45.0%
AACATCTGCAGACCATGATG+AGG - chr8_3:53147772-53147791 Msa1295100:intron 45.0%
TGCAGACCATGATGAGGTTT+CGG - chr8_3:53147778-53147797 Msa1295100:intron 45.0%
! CTAGGCAAAGTTAGTGTTGG+TGG + chr8_3:53147831-53147850 None:intergenic 45.0%
TTGCCTAGTTATGGTAGGAG+AGG - chr8_3:53147843-53147862 Msa1295100:intron 45.0%
TCTCCTCTCCTACCATAACT+AGG + chr8_3:53147849-53147868 None:intergenic 45.0%
TCAACCATCTAGACTTGCAG+TGG + chr8_3:53147988-53148007 None:intergenic 45.0%
TGCACAACCTGGTAGAATTC+TGG - chr8_3:53148216-53148235 Msa1295100:intron 45.0%
GAAAAGGGTTTCATGGAGGG+AGG - chr8_3:53143499-53143518 Msa1295100:three_prime_UTR 50.0%
GAGGACGTGACACATTGGAT+TGG - chr8_3:53143829-53143848 Msa1295100:three_prime_UTR 50.0%
GAAAATGGTTCCCACACCTG+TGG + chr8_3:53144304-53144323 None:intergenic 50.0%
CGTGGGGAAGAAGAAGAAGA+AGG + chr8_3:53144392-53144411 None:intergenic 50.0%
TCTGTCCGGTGTATTCGGTT+AGG - chr8_3:53144711-53144730 Msa1295100:intron 50.0%
CTGTCCGGTGTATTCGGTTA+GGG - chr8_3:53144712-53144731 Msa1295100:intron 50.0%
GATAGGTTAATTGAGCCGGG+AGG - chr8_3:53145002-53145021 Msa1295100:intron 50.0%
ATTCGAAGAAGCTCGAGAGG+AGG - chr8_3:53145072-53145091 Msa1295100:intron 50.0%
AGGAGGAGTAGTGAACCAAC+TGG - chr8_3:53145089-53145108 Msa1295100:intron 50.0%
TCAGGAGTGGCATAGAGTGA+CGG + chr8_3:53145155-53145174 None:intergenic 50.0%
GAGAAACTCTTGAGAAGCCG+CGG + chr8_3:53145266-53145285 None:intergenic 50.0%
GCGGCTTCTCAAGAGTTTCT+CGG - chr8_3:53145265-53145284 Msa1295100:intron 50.0%
GCTTCTCAAGAGTTTCTCGG+AGG - chr8_3:53145268-53145287 Msa1295100:intron 50.0%
TTTCTCGGAGGCCAATGTAC+AGG - chr8_3:53145280-53145299 Msa1295100:CDS 50.0%
CTCCTGCTTAGCCTGTACAT+TGG + chr8_3:53145294-53145313 None:intergenic 50.0%
CAATGTACAGGCTAAGCAGG+AGG - chr8_3:53145292-53145311 Msa1295100:CDS 50.0%
!! ACTGTGGTTTCTAGTTCGGC+TGG - chr8_3:53145353-53145372 Msa1295100:CDS 50.0%
TGTGAACCCTGAGCCTCTTA+AGG - chr8_3:53145394-53145413 Msa1295100:CDS 50.0%
! ATCAGCAATGGTGGCGATGT+TGG - chr8_3:53145455-53145474 Msa1295100:CDS 50.0%
! TCAGCAATGGTGGCGATGTT+GGG - chr8_3:53145456-53145475 Msa1295100:CDS 50.0%
CACAAGTTACACGGATGGAG+AGG - chr8_3:53145616-53145635 Msa1295100:CDS 50.0%
!!! CTGCGGAGTTTTTTGACGCT+TGG - chr8_3:53145678-53145697 Msa1295100:CDS 50.0%
!! TCTTCTGATGGTGGCACTCA+AGG - chr8_3:53146094-53146113 Msa1295100:intron 50.0%
CAGTGGGAGAGAATCAGAGA+AGG - chr8_3:53146229-53146248 Msa1295100:CDS 50.0%
CCTAGCAGTTCCTCTTCCAA+TGG + chr8_3:53146380-53146399 None:intergenic 50.0%
CCATTGGAAGAGGAACTGCT+AGG - chr8_3:53146377-53146396 Msa1295100:CDS 50.0%
AGAGATGTCTCAGAGGAACC+AGG - chr8_3:53146498-53146517 Msa1295100:CDS 50.0%
AAATCTCACCTACTGCCTCC+TGG + chr8_3:53146519-53146538 None:intergenic 50.0%
CAAGAGTTGTAAACACCGGG+TGG - chr8_3:53146725-53146744 Msa1295100:CDS 50.0%
TCCTGATACTAAGTGCCACC+CGG + chr8_3:53146816-53146835 None:intergenic 50.0%
GAATCAGCATTGTCTGTCCG+CGG - chr8_3:53146873-53146892 Msa1295100:intron 50.0%
AATCAGCATTGTCTGTCCGC+GGG - chr8_3:53146874-53146893 Msa1295100:intron 50.0%
TTCCCTCTTTGGTGGAGTTG+GGG + chr8_3:53146977-53146996 None:intergenic 50.0%
CAAGGCGTGAGAGACAAAGA+AGG - chr8_3:53147651-53147670 Msa1295100:intron 50.0%
GAAGGTCTAGGAGGCAGAAA+TGG - chr8_3:53147669-53147688 Msa1295100:intron 50.0%
CGTGTTCCGAAACCTCATCA+TGG + chr8_3:53147787-53147806 None:intergenic 50.0%
GAGGTTTCGGAACACGATGA+CGG - chr8_3:53147791-53147810 Msa1295100:intron 50.0%
CCATCTAGACTTGCAGTGGA+AGG + chr8_3:53147984-53148003 None:intergenic 50.0%
CCTTCCACTGCAAGTCTAGA+TGG - chr8_3:53147981-53148000 Msa1295100:intron 50.0%
GCTATGATGCATGCACAACC+TGG - chr8_3:53148205-53148224 Msa1295100:intron 50.0%
! GTGATGCAGCCGGAGTTGAT+CGG - chr8_3:53143454-53143473 Msa1295100:three_prime_UTR 55.0%
GGCTTGAGGACGTGACACAT+TGG - chr8_3:53143824-53143843 Msa1295100:three_prime_UTR 55.0%
! ATGACGCACTTGGTGAGGCA+TGG - chr8_3:53143992-53144011 Msa1295100:CDS 55.0%
ATGTGTGTTGTGTGGCCCGT+GGG + chr8_3:53144045-53144064 None:intergenic 55.0%
AATGTGTGTTGTGTGGCCCG+TGG + chr8_3:53144046-53144065 None:intergenic 55.0%
TTCTTCCCCACGCAACCACA+AGG - chr8_3:53144400-53144419 Msa1295100:intron 55.0%
TAATTGAGCCGGGAGGTTCC+AGG - chr8_3:53145009-53145028 Msa1295100:intron 55.0%
AATTGAGCCGGGAGGTTCCA+GGG - chr8_3:53145010-53145029 Msa1295100:intron 55.0%
!! ATTAGGAACAGGCACCGAGG+TGG + chr8_3:53145054-53145073 None:intergenic 55.0%
! CGAATTAGGAACAGGCACCG+AGG + chr8_3:53145057-53145076 None:intergenic 55.0%
GTCACTCTATGCCACTCCTG+AGG - chr8_3:53145154-53145173 Msa1295100:intron 55.0%
GTAAGGAGAAGGCGGAAACG+AGG + chr8_3:53145219-53145238 None:intergenic 55.0%
GGCCAATGTACAGGCTAAGC+AGG - chr8_3:53145289-53145308 Msa1295100:CDS 55.0%
GAACCCTGAGCCTCTTAAGG+AGG - chr8_3:53145397-53145416 Msa1295100:CDS 55.0%
GCTCCTCCTTAAGAGGCTCA+GGG + chr8_3:53145403-53145422 None:intergenic 55.0%
TGCTCCTCCTTAAGAGGCTC+AGG + chr8_3:53145404-53145423 None:intergenic 55.0%
GGAGAGAGATGGTGAGAGTG+AGG - chr8_3:53145553-53145572 Msa1295100:CDS 55.0%
! CTTTGCAGAGCGTTCTGTGC+CGG + chr8_3:53145648-53145667 None:intergenic 55.0%
TATTGCAGAAGGTGGGCAGC+TGG - chr8_3:53146294-53146313 Msa1295100:CDS 55.0%
AAGAGGAACTGCTAGGGCTG+AGG - chr8_3:53146384-53146403 Msa1295100:CDS 55.0%
GATGTCTCAGAGGAACCAGG+AGG - chr8_3:53146501-53146520 Msa1295100:CDS 55.0%
TCCTGATACTCAGTGCCACC+CGG + chr8_3:53146743-53146762 None:intergenic 55.0%
ACCGGGTGGCACTTAGTATC+AGG - chr8_3:53146812-53146831 Msa1295100:intron 55.0%
TCAAACATTGGCCCTACCCG+CGG + chr8_3:53146893-53146912 None:intergenic 55.0%
TACCCCCAACTCCACCAAAG+AGG - chr8_3:53146971-53146990 Msa1295100:intron 55.0%
ACCCCCAACTCCACCAAAGA+GGG - chr8_3:53146972-53146991 Msa1295100:intron 55.0%
TCCCTCTTTGGTGGAGTTGG+GGG + chr8_3:53146976-53146995 None:intergenic 55.0%
! GGGGTGCTCGTGGCATGTAT+GGG + chr8_3:53144023-53144042 None:intergenic 60.0%
TGTGTGTTGTGTGGCCCGTG+GGG + chr8_3:53144044-53144063 None:intergenic 60.0%
! GGCAGATTTTTGACCCGCCC+TGG + chr8_3:53145030-53145049 None:intergenic 60.0%
AGGAACTGCTAGGGCTGAGG+CGG - chr8_3:53146387-53146406 Msa1295100:CDS 60.0%
CAGAGGAACCAGGAGGCAGT+AGG - chr8_3:53146508-53146527 Msa1295100:CDS 60.0%
! ACCGGGTGGCACTGAGTATC+AGG - chr8_3:53146739-53146758 Msa1295100:CDS 60.0%
AGCATTGTCTGTCCGCGGGT+AGG - chr8_3:53146878-53146897 Msa1295100:intron 60.0%
GCATTGTCTGTCCGCGGGTA+GGG - chr8_3:53146879-53146898 Msa1295100:intron 60.0%
!! GGGGGTGCTCGTGGCATGTA+TGG + chr8_3:53144024-53144043 None:intergenic 65.0%
TGTGTTGTGTGGCCCGTGGG+GGG + chr8_3:53144042-53144061 None:intergenic 65.0%
GTGTGTTGTGTGGCCCGTGG+GGG + chr8_3:53144043-53144062 None:intergenic 65.0%
!! AGGAACAGGCACCGAGGTGG+AGG + chr8_3:53145051-53145070 None:intergenic 65.0%
AAGCGGCGTCACCTCAGGAG+TGG + chr8_3:53145168-53145187 None:intergenic 65.0%
TCTGGAAGCGGCGTCACCTC+AGG + chr8_3:53145173-53145192 None:intergenic 65.0%
ATCACAAACGCCGTGGGCCG+CGG - chr8_3:53145246-53145265 Msa1295100:intron 65.0%
TCTTGAGAAGCCGCGGCCCA+CGG + chr8_3:53145259-53145278 None:intergenic 65.0%
CATGCCACGAGCACCCCCCA+CGG - chr8_3:53144026-53144045 Msa1295100:CDS 70.0%
ATGCCACGAGCACCCCCCAC+GGG - chr8_3:53144027-53144046 Msa1295100:CDS 70.0%
TGAGCCGGGAGGTTCCAGGG+CGG - chr8_3:53145013-53145032 Msa1295100:intron 70.0%
TGACCCGCCCTGGAACCTCC+CGG + chr8_3:53145020-53145039 None:intergenic 70.0%
GAGCCGGGAGGTTCCAGGGC+GGG - chr8_3:53145014-53145033 Msa1295100:intron 75.0%
!!! TGGCCCGTGGGGGGTGCTCG+TGG + chr8_3:53144033-53144052 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 53143435 53148367 53143435 ID=Msa1295100;Name=Msa1295100
chr8_3 mRNA 53143435 53148367 53143435 ID=Msa1295100-mRNA-1;Parent=Msa1295100;Name=Msa1295100-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|0.6|0.33|0.83|0.2|0.33|6|544|485
chr8_3 exon 53143435 53144157 53143435 ID=Msa1295100-mRNA-1:exon:15220;Parent=Msa1295100-mRNA-1
chr8_3 exon 53145273 53145497 53145273 ID=Msa1295100-mRNA-1:exon:15219;Parent=Msa1295100-mRNA-1
chr8_3 exon 53145513 53145713 53145513 ID=Msa1295100-mRNA-1:exon:15218;Parent=Msa1295100-mRNA-1
chr8_3 exon 53146098 53146829 53146098 ID=Msa1295100-mRNA-1:exon:15217;Parent=Msa1295100-mRNA-1
chr8_3 exon 53147381 53147495 53147381 ID=Msa1295100-mRNA-1:exon:15216;Parent=Msa1295100-mRNA-1
chr8_3 exon 53148362 53148367 53148362 ID=Msa1295100-mRNA-1:exon:15215;Parent=Msa1295100-mRNA-1
chr8_3 CDS 53148362 53148367 53148362 ID=Msa1295100-mRNA-1:cds;Parent=Msa1295100-mRNA-1
chr8_3 CDS 53147381 53147495 53147381 ID=Msa1295100-mRNA-1:cds;Parent=Msa1295100-mRNA-1
chr8_3 CDS 53146098 53146829 53146098 ID=Msa1295100-mRNA-1:cds;Parent=Msa1295100-mRNA-1
chr8_3 CDS 53145513 53145713 53145513 ID=Msa1295100-mRNA-1:cds;Parent=Msa1295100-mRNA-1
chr8_3 CDS 53145273 53145497 53145273 ID=Msa1295100-mRNA-1:cds;Parent=Msa1295100-mRNA-1
chr8_3 CDS 53143979 53144157 53143979 ID=Msa1295100-mRNA-1:cds;Parent=Msa1295100-mRNA-1
chr8_3 three_prime_UTR 53143435 53143978 53143435 ID=Msa1295100-mRNA-1:three_prime_utr;Parent=Msa1295100-mRNA-1
Gene Sequence

>Msa1295100

ATGGTGGTGTGGGAACCATTTTCGCTCACAAACAAATATTATTATTATGCACCTTCTTCTTCTTCTTTTTTCCTAGTCCTTTTCCACTCCTTCTTCTTCTTCTTCCCCACGCAACCACAAGTTATGCCGACATTTACTGCTATAGCATTTGATAGGTTAATTGAGCCGGGAGGTTCCAGGGCGGGTCAAAAATCTGCCTCCACCTCGGTGCCTGTTCCTAATTCGAAGAAGCTCGAGAGGAGGAGTAGTGAACCAACTGGAACTGCTAGAAAGAAGCCGCCTACTCGACCTCAATTAAAGCCGTCACTCTATGCCACTCCTGAGGTGACGCCGCTTCCAGATTCTCCTCTTCAAGATTCAACTTCCTCGTTTCCGCCTTCTCCTTACATCATCAATCACAAACGCCGTGGGCCGCGGCTTCTCAAGAGTTTCTCGGAGGCCAATGTACAGGCTAAGCAGGAGGTTTGTGAAGAAGGAAATGTTAGTGGTAAGAGCTCTGATACTGTGGTTTCTAGTTCGGCTGGTGATCTCCAAGTTACTTGTGTGAACCCTGAGCCTCTTAAGGAGGAGCAAGATAATGGAGTACAAGATACCAAAGTTAGTATCAGCAATGGTGGCGATGTTGGGCATGAGAACAGAGAAAATGAAAGTAGTAGTGATCCTAATGGAAAGCATGTGGAAAAGCTAGTGCCGTTGAATTTGGAGAGAGATGGTGAGAGTGAGGACTTTTATGATCCACGTGATACTATGAGTTCTATGAGTTTCACAAGTTACACGGATGGAGAGGATAATACCGGCACAGAACGCTCTGCAAAGTATAGCACTGCTGCGGAGTTTTTTGACGCTTGGGAAGAACTCTCTTCTGATGGTGGCACTCAAGGTTCTCTACGACTACGTGATGTTGATGCTGAATTGCGTGAAATAAGGTTGAGTCTATTGATGGAGATAGAGAAGCGAAAGCAAATTGAAGAATCAATTAAAAGCATGCAAAGTCAGTGGGAGAGAATCAGAGAAGGGTTATCTTCTGTTGGAATTGTTTTACCTGCAGATCTTAGTGGGCAGCTGGATTCTGATCCTGTAGATGATCTATGTCAGCAGGTTTACATTGCTAGGTTCATATCAAACGCCATTGGAAGAGGAACTGCTAGGGCTGAGGCGGAGACAGAGATGAAAACCCAATTAGACTCAAAGAACTTTGAGATTTCTCGACTATTGGAACGCCTTCATTACTATGAGACCATGAATAGAGAGATGTCTCAGAGGAACCAGGAGGCAGTAGAGACGGCAAGGCGTGAGAGACAAAGAAGGTCTAGGAGGCAGAAATGGATTTGGGGCTCTATTACTACTGCCATTGTACTTGGTACTACAGCAATAGCATGGTCGTATCTCCCATCAAGTAAAGGATCAACATCTGCAGACCATGATGAGGTTTCGGAACACGATGACGGAGCCAACTAA
Protein sequence

>Msa1295100

MVVWEPFSLTNKYYYYAPSSSSFFLVLFHSFFFFFPTQPQVMPTFTAIAFDRLIEPGGSRAGQKSASTSVPVPNSKKLERRSSEPTGTARKKPPTRPQLKPSLYATPEVTPLPDSPLQDSTSSFPPSPYIINHKRRGPRLLKSFSEANVQAKQEVCEEGNVSGKSSDTVVSSSAGDLQVTCVNPEPLKEEQDNGVQDTKVSISNGGDVGHENRENESSSDPNGKHVEKLVPLNLERDGESEDFYDPRDTMSSMSFTSYTDGEDNTGTERSAKYSTAAEFFDAWEELSSDGGTQGSLRLRDVDAELREIRLSLLMEIEKRKQIEESIKSMQSQWERIREGLSSVGIVLPADLSGQLDSDPVDDLCQQVYIARFISNAIGRGTARAEAETEMKTQLDSKNFEISRLLERLHYYETMNREMSQRNQEAVETARRERQRRSRRQKWIWGSITTAIVLGTTAIAWSYLPSSKGSTSADHDEVSEHDDGAN*