Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1255550 | XP_013446422.1 | 78.399 | 537 | 60 | 7 | 1 | 485 | 1 | 533 | 0.0 | 811 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1255550 | sp|O64827|SUVR5_ARATH | 45.302 | 298 | 127 | 9 | 215 | 485 | 1089 | 1377 | 1.48e-62 | 224 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1255550 | A0A072TSH8 | 78.399 | 537 | 60 | 7 | 1 | 485 | 1 | 533 | 0.0 | 811 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa1135190 | Msa1255550 | 0.809349 | 1.977406e-50 | -8.615850e-47 |
Msa0574590 | Msa1255550 | 0.805234 | 1.472679e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1255550 | MtrunA17_Chr8g0373821 | 78.399 | 537 | 60 | 7 | 1 | 485 | 1 | 533 | 0.0 | 811 |
Msa1255550 | MtrunA17_Chr5g0403241 | 53.106 | 322 | 116 | 7 | 192 | 485 | 1188 | 1502 | 4.07e-92 | 306 |
Msa1255550 | MtrunA17_Chr5g0403241 | 33.793 | 145 | 56 | 2 | 64 | 168 | 492 | 636 | 1.03e-13 | 73.9 |
Msa1255550 | MtrunA17_Chr4g0075321 | 54.799 | 323 | 114 | 8 | 190 | 485 | 742 | 1059 | 4.26e-87 | 288 |
Msa1255550 | MtrunA17_Chr4g0075321 | 34.800 | 250 | 95 | 4 | 13 | 207 | 326 | 562 | 4.51e-27 | 115 |
Msa1255550 | MtrunA17_Chr8g0373841 | 50.667 | 225 | 80 | 5 | 6 | 207 | 20 | 236 | 7.49e-49 | 174 |
Msa1255550 | MtrunA17_Chr4g0075341 | 44.776 | 134 | 65 | 3 | 47 | 175 | 167 | 296 | 1.86e-21 | 95.9 |
Msa1255550 | MtrunA17_Chr4g0003501 | 31.455 | 213 | 105 | 7 | 310 | 485 | 742 | 950 | 1.02e-18 | 89.7 |
Msa1255550 | MtrunA17_Chr5g0399801 | 30.516 | 213 | 109 | 8 | 310 | 485 | 874 | 1084 | 4.63e-18 | 87.8 |
Msa1255550 | MtrunA17_Chr4g0003511 | 29.358 | 218 | 105 | 7 | 310 | 485 | 837 | 1047 | 1.21e-17 | 86.3 |
Msa1255550 | MtrunA17_Chr7g0255181 | 27.393 | 303 | 166 | 13 | 209 | 485 | 426 | 700 | 1.49e-17 | 85.9 |
Msa1255550 | MtrunA17_Chr7g0262001 | 33.149 | 181 | 98 | 5 | 328 | 485 | 517 | 697 | 1.32e-16 | 82.8 |
Msa1255550 | MtrunA17_Chr1g0183321 | 31.868 | 182 | 99 | 6 | 328 | 485 | 561 | 741 | 2.37e-16 | 82.0 |
Msa1255550 | MtrunA17_Chr1g0190311 | 31.148 | 183 | 100 | 5 | 328 | 485 | 458 | 639 | 5.19e-16 | 80.9 |
Msa1255550 | MtrunA17_Chr8g0354821 | 27.778 | 324 | 168 | 14 | 202 | 485 | 386 | 683 | 5.39e-15 | 77.8 |
Msa1255550 | MtrunA17_Chr3g0125251 | 29.878 | 164 | 91 | 6 | 336 | 485 | 1307 | 1460 | 1.42e-11 | 67.4 |
Msa1255550 | MtrunA17_Chr2g0305371 | 29.375 | 160 | 101 | 5 | 332 | 485 | 314 | 467 | 1.47e-11 | 66.6 |
Msa1255550 | MtrunA17_Chr1g0170651 | 27.972 | 286 | 162 | 10 | 212 | 485 | 288 | 541 | 6.20e-11 | 64.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1255550 | AT2G23740.1 | 45.302 | 298 | 127 | 9 | 215 | 485 | 1082 | 1370 | 1.41e-63 | 224 |
Msa1255550 | AT2G23740.3 | 45.302 | 298 | 127 | 9 | 215 | 485 | 1089 | 1377 | 1.50e-63 | 224 |
Msa1255550 | AT2G23740.6 | 45.302 | 298 | 127 | 9 | 215 | 485 | 1089 | 1377 | 1.50e-63 | 224 |
Msa1255550 | AT2G23740.2 | 45.302 | 298 | 127 | 9 | 215 | 485 | 1089 | 1377 | 1.50e-63 | 224 |
Msa1255550 | AT2G23740.4 | 56.085 | 189 | 65 | 4 | 215 | 392 | 1089 | 1270 | 1.55e-54 | 197 |
Msa1255550 | AT2G23740.5 | 56.085 | 189 | 65 | 4 | 215 | 392 | 1089 | 1270 | 1.55e-54 | 197 |
Msa1255550 | AT3G04380.2 | 28.070 | 228 | 119 | 8 | 283 | 485 | 223 | 430 | 8.31e-17 | 83.2 |
Msa1255550 | AT3G04380.1 | 28.070 | 228 | 119 | 8 | 283 | 485 | 250 | 457 | 9.37e-17 | 83.2 |
Msa1255550 | AT3G04380.6 | 28.070 | 228 | 119 | 8 | 283 | 485 | 223 | 430 | 1.01e-16 | 82.8 |
Msa1255550 | AT3G04380.4 | 28.070 | 228 | 119 | 8 | 283 | 485 | 250 | 457 | 1.02e-16 | 83.2 |
Msa1255550 | AT3G04380.5 | 28.070 | 228 | 119 | 8 | 283 | 485 | 207 | 414 | 1.08e-16 | 82.8 |
Msa1255550 | AT3G04380.3 | 28.070 | 228 | 119 | 8 | 283 | 485 | 234 | 441 | 1.14e-16 | 82.8 |
Msa1255550 | AT1G73100.1 | 28.440 | 327 | 156 | 17 | 204 | 485 | 371 | 664 | 5.40e-16 | 81.3 |
Msa1255550 | AT2G35160.5 | 29.891 | 184 | 99 | 5 | 322 | 485 | 580 | 753 | 5.33e-14 | 75.1 |
Msa1255550 | AT2G35160.2 | 29.891 | 184 | 99 | 5 | 322 | 485 | 616 | 789 | 5.62e-14 | 75.1 |
Msa1255550 | AT2G35160.3 | 29.891 | 184 | 99 | 5 | 322 | 485 | 616 | 789 | 5.62e-14 | 75.1 |
Msa1255550 | AT2G35160.1 | 29.891 | 184 | 99 | 5 | 322 | 485 | 616 | 789 | 5.62e-14 | 75.1 |
Msa1255550 | AT2G35160.4 | 29.891 | 184 | 99 | 5 | 322 | 485 | 616 | 789 | 5.62e-14 | 75.1 |
Msa1255550 | AT2G22740.2 | 26.267 | 217 | 114 | 7 | 310 | 485 | 574 | 785 | 7.00e-12 | 68.6 |
Msa1255550 | AT2G22740.1 | 26.267 | 217 | 114 | 7 | 310 | 485 | 574 | 785 | 7.00e-12 | 68.6 |
Msa1255550 | AT5G04940.2 | 24.922 | 321 | 174 | 14 | 204 | 485 | 373 | 665 | 5.30e-11 | 65.5 |
Msa1255550 | AT5G04940.1 | 24.922 | 321 | 174 | 14 | 204 | 485 | 373 | 665 | 5.30e-11 | 65.5 |
Msa1255550 | AT3G03750.2 | 28.814 | 177 | 104 | 4 | 331 | 485 | 169 | 345 | 8.76e-11 | 63.9 |
Find 101 sgRNAs with CRISPR-Local
Find 171 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CACATACATAATTTCCTTAT+TGG | 0.135814 | 8_2:+54358819 | None:intergenic |
GATGAAGAAAAGGACATATT+TGG | 0.136959 | 8_2:-54360455 | Msa1255550:CDS |
GGCGAAATGCTCAAGCTTTC+TGG | 0.183364 | 8_2:-54361105 | Msa1255550:CDS |
TTGATCTCCAATGGACTTTC+CGG | 0.248032 | 8_2:+54361180 | None:intergenic |
CGAATATGATATATCGAAAA+TGG | 0.248933 | 8_2:-54361699 | Msa1255550:CDS |
ATGAAGAAAAGGACATATTT+GGG | 0.300996 | 8_2:-54360454 | Msa1255550:CDS |
GAACGGAGTTCGTGTTAAAT+TGG | 0.304027 | 8_2:-54360051 | Msa1255550:CDS |
AATCCATGCAAATCAGGTTC+TGG | 0.312350 | 8_2:+54361217 | None:intergenic |
CCGTTCTGCAATATTCTGTT+TGG | 0.323633 | 8_2:+54360068 | None:intergenic |
AACAGGCCAAGTCAGTAAAA+AGG | 0.328103 | 8_2:+54359767 | None:intergenic |
CAACTTATTCCGCAATATAC+TGG | 0.334368 | 8_2:+54358867 | None:intergenic |
TATACGTGATCACACGTTTC+AGG | 0.337540 | 8_2:+54360485 | None:intergenic |
GCTATATTTGGTATTAAAAC+AGG | 0.346709 | 8_2:+54359750 | None:intergenic |
TAACTCTGTAATCACAAGAT+TGG | 0.374249 | 8_2:+54359234 | None:intergenic |
GAACCTGATTTGCATGGATT+TGG | 0.375054 | 8_2:-54361214 | Msa1255550:CDS |
TGTGGAGGTACAACTGGTTC+TGG | 0.375847 | 8_2:-54361375 | Msa1255550:intron |
TGTAAATGGTCGAATCATAT+TGG | 0.379997 | 8_2:-54360402 | Msa1255550:CDS |
GGATTTGGTGTTGGCACATC+CGG | 0.380974 | 8_2:-54361199 | Msa1255550:CDS |
AGGTTCGCATACGATGTAAA+TGG | 0.389210 | 8_2:-54360416 | Msa1255550:CDS |
CCCATTTGTGGAGGTACAAC+TGG | 0.389596 | 8_2:-54361381 | Msa1255550:intron |
AACATTTAAAGTGTCCAATA+AGG | 0.399037 | 8_2:-54358833 | Msa1255550:three_prime_UTR |
TGTACGACGGTTTGAATTTG+AGG | 0.401657 | 8_2:+54361275 | None:intergenic |
ATTCACAGGGATTCGGAGTA+AGG | 0.405434 | 8_2:-54359932 | Msa1255550:intron |
TATGAGCCTGTGCTCGTAGA+AGG | 0.406674 | 8_2:-54358981 | Msa1255550:CDS |
TTCTTTGCAAAGAACATCTC+AGG | 0.407939 | 8_2:-54361126 | Msa1255550:CDS |
TGATAATGAGAATGCTGTTA+AGG | 0.413807 | 8_2:-54361055 | Msa1255550:CDS |
TATGCGAACCTTCCGGCCAT+TGG | 0.417185 | 8_2:+54360428 | None:intergenic |
TACATCGTATGCGAACCTTC+CGG | 0.420636 | 8_2:+54360421 | None:intergenic |
TTATCTGATTCACAGGGATT+CGG | 0.425686 | 8_2:-54359939 | Msa1255550:intron |
GAAGGATATCCTTGTCTTTG+TGG | 0.428480 | 8_2:-54358963 | Msa1255550:CDS |
AACTCTGTAATCACAAGATT+GGG | 0.429228 | 8_2:+54359235 | None:intergenic |
TATGTATGTGTAACATTGAA+TGG | 0.430897 | 8_2:-54358806 | Msa1255550:three_prime_UTR |
GCAAGCTAAGTGAATCCCTT+TGG | 0.435509 | 8_2:+54361624 | None:intergenic |
ATCAAGGCCTGTGGATGAAA+TGG | 0.435866 | 8_2:-54361561 | Msa1255550:CDS |
CTGCAATATTCTGTTTGGAC+AGG | 0.439001 | 8_2:+54360073 | None:intergenic |
GTAAACATCTCCCAAGGCTT+AGG | 0.442228 | 8_2:+54360895 | None:intergenic |
ACACCAAATCCATGCAAATC+AGG | 0.445863 | 8_2:+54361211 | None:intergenic |
ATCCATGCAAATCAGGTTCT+GGG | 0.447802 | 8_2:+54361218 | None:intergenic |
GACGGTTTGAATTTGAGGTC+TGG | 0.466441 | 8_2:+54361280 | None:intergenic |
TGAATAGCCATTTCATCCAC+AGG | 0.471451 | 8_2:+54361554 | None:intergenic |
TTGATTCTGCCGCAAAGCTT+AGG | 0.472145 | 8_2:+54360989 | None:intergenic |
ATGCAATGACCTAAGCTTTG+CGG | 0.481210 | 8_2:-54360998 | Msa1255550:CDS |
CATTGTCGATCCTTGGTACC+AGG | 0.488120 | 8_2:+54361518 | None:intergenic |
CTACGCAATTGATGAAGAAT+CGG | 0.488801 | 8_2:+54360859 | None:intergenic |
ATGTATATCTTCCTAAGCCT+TGG | 0.489667 | 8_2:-54360906 | Msa1255550:CDS |
TGTATATCTTCCTAAGCCTT+GGG | 0.489888 | 8_2:-54360905 | Msa1255550:CDS |
GAGATGTTCTTTGCAAAGAA+AGG | 0.490990 | 8_2:+54361129 | None:intergenic |
TGCTCGACATTGTCGATCCT+TGG | 0.497731 | 8_2:+54361511 | None:intergenic |
GATTTGCATGGATTTGGTGT+TGG | 0.498006 | 8_2:-54361208 | Msa1255550:CDS |
GATTGTAAGCATACACATAT+CGG | 0.502921 | 8_2:-54359197 | Msa1255550:CDS |
TGTAAGTATCGTTCCCGTCC+TGG | 0.503749 | 8_2:-54361345 | Msa1255550:CDS |
AAATGTTGAGGTTCTAGTAA+AGG | 0.506407 | 8_2:+54358919 | None:intergenic |
CATTGGCACAAAGCCGAGAC+GGG | 0.509657 | 8_2:-54361303 | Msa1255550:CDS |
AAAATTAGGGTCGTCGCGAA+AGG | 0.515962 | 8_2:-54361031 | Msa1255550:CDS |
CGGAGTTCGTGTTAAATTGG+AGG | 0.527617 | 8_2:-54360048 | Msa1255550:intron |
CAAACCGTCGTACATTAAAG+AGG | 0.536529 | 8_2:-54361266 | Msa1255550:CDS |
TTCCCAGAACCTGATTTGCA+TGG | 0.538009 | 8_2:-54361220 | Msa1255550:CDS |
ATTTGAGGTCTGGCCCGTCT+CGG | 0.538631 | 8_2:+54361290 | None:intergenic |
GGCACATCCGGAAAGTCCAT+TGG | 0.540615 | 8_2:-54361187 | Msa1255550:CDS |
CAGGGATTCGGAGTAAGGGC+TGG | 0.542170 | 8_2:-54359927 | Msa1255550:CDS |
CAGAGTTATTGTAGAGGGCA+CGG | 0.549634 | 8_2:-54359219 | Msa1255550:CDS |
AACACTGGATTGATCTCCAA+TGG | 0.550234 | 8_2:+54361171 | None:intergenic |
ATTTGTAGAACCTGGTACCA+AGG | 0.559017 | 8_2:-54361528 | Msa1255550:CDS |
AAGAATCGGCTTTGTCACAT+AGG | 0.562883 | 8_2:+54360873 | None:intergenic |
GTCGAGCATATGTCAAAGCA+AGG | 0.566844 | 8_2:-54361496 | Msa1255550:CDS |
GTCTGATATAGAAAACCAAA+GGG | 0.569533 | 8_2:-54361639 | Msa1255550:CDS |
ATTCAAATATTTGTAGAACC+TGG | 0.571965 | 8_2:-54361536 | Msa1255550:CDS |
ACATCATTGATGACCAACAC+TGG | 0.573744 | 8_2:+54361156 | None:intergenic |
ACATTGGCACAAAGCCGAGA+CGG | 0.573840 | 8_2:-54361304 | Msa1255550:CDS |
ATTGCGTAGTCTTGATTCTG+AGG | 0.575859 | 8_2:-54360845 | Msa1255550:intron |
AGTCTGATATAGAAAACCAA+AGG | 0.577396 | 8_2:-54361640 | Msa1255550:CDS |
CAAAAGAAGAGATTACGTCT+TGG | 0.579395 | 8_2:+54359807 | None:intergenic |
ATAGCAGTGGAACAGTATCA+AGG | 0.585597 | 8_2:-54361577 | Msa1255550:CDS |
CTTTCCTCTTTAATGTACGA+CGG | 0.585682 | 8_2:+54361262 | None:intergenic |
TTCACAGGGATTCGGAGTAA+GGG | 0.591817 | 8_2:-54359931 | Msa1255550:intron |
GGATATCCTTCTACGAGCAC+AGG | 0.594050 | 8_2:+54358975 | None:intergenic |
AAATGGTCGAATCATATTGG+AGG | 0.599006 | 8_2:-54360399 | Msa1255550:intron |
CAGGAGGCACACAACAGACG+CGG | 0.600597 | 8_2:-54359846 | Msa1255550:CDS |
TTAGACTGTCCAGTATATTG+CGG | 0.600785 | 8_2:-54358876 | Msa1255550:three_prime_UTR |
TGTGGATCTTTGAAATGCTG+AGG | 0.600856 | 8_2:-54358945 | Msa1255550:exon |
TTGGGAAACCAATGGCCGGA+AGG | 0.605290 | 8_2:-54360436 | Msa1255550:CDS |
GATTACAGAGTTATTGTAGA+GGG | 0.611271 | 8_2:-54359224 | Msa1255550:CDS |
ATTGGAGATCAATCCAGTGT+TGG | 0.619835 | 8_2:-54361169 | Msa1255550:CDS |
AATTATACTTCGATTCACAA+AGG | 0.622152 | 8_2:+54358721 | None:intergenic |
ATATTTGGGAAACCAATGGC+CGG | 0.622843 | 8_2:-54360440 | Msa1255550:CDS |
AGATCTACTACACATATCAC+AGG | 0.627421 | 8_2:+54360964 | None:intergenic |
GGACATATTTGGGAAACCAA+TGG | 0.633831 | 8_2:-54360444 | Msa1255550:CDS |
GCATATGTCAAAGCAAGGGA+AGG | 0.636728 | 8_2:-54361491 | Msa1255550:CDS |
GAAATGATCTCGTATAGCAG+TGG | 0.636945 | 8_2:-54361590 | Msa1255550:CDS |
TGGAACAGTATCAAGGCCTG+TGG | 0.639274 | 8_2:-54361570 | Msa1255550:CDS |
TTCAAAGATCCACAAAGACA+AGG | 0.641053 | 8_2:+54358954 | None:intergenic |
TCGAGCATATGTCAAAGCAA+GGG | 0.655487 | 8_2:-54361495 | Msa1255550:CDS |
TGATTACAGAGTTATTGTAG+AGG | 0.655560 | 8_2:-54359225 | Msa1255550:CDS |
ACGTTTGTGTGTGAGTACAT+TGG | 0.657919 | 8_2:-54359885 | Msa1255550:CDS |
AGGCACACAACAGACGCGGA+AGG | 0.658214 | 8_2:-54359842 | Msa1255550:CDS |
ACATAGGTAAACATCTCCCA+AGG | 0.667902 | 8_2:+54360889 | None:intergenic |
CCAAACAGAATATTGCAGAA+CGG | 0.677454 | 8_2:-54360068 | Msa1255550:CDS |
AGGAAAGCTGAAGAAAATTG+CGG | 0.686851 | 8_2:-54361246 | Msa1255550:CDS |
ACACATTTAACATCTCGTTG+AGG | 0.700034 | 8_2:-54358752 | Msa1255550:three_prime_UTR |
AAAGCTGAAGAAAATTGCGG+TGG | 0.708696 | 8_2:-54361243 | Msa1255550:CDS |
TTCGAGTGTAACGATAAGTG+CGG | 0.716852 | 8_2:-54360107 | Msa1255550:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATATTGTAGTTTACAATTAA+TGG | + | chr8_2:54360033-54360052 | None:intergenic | 15.0% |
!! | TGGCATTTAAAAAGAAAAAT+TGG | - | chr8_2:54359762-54359781 | Msa1255550:CDS | 20.0% |
!!! | ATTTTAGCATATTCTTGATA+TGG | + | chr8_2:54360104-54360123 | None:intergenic | 20.0% |
!! | GATAAGACAAAAAATTAACA+TGG | - | chr8_2:54360814-54360833 | Msa1255550:intron | 20.0% |
!!! | GCAATTTGTTCATTTTTAAT+TGG | - | chr8_2:54360838-54360857 | Msa1255550:intron | 20.0% |
!!! | CTACACATTTAATAACTTTT+TGG | + | chr8_2:54360951-54360970 | None:intergenic | 20.0% |
!! | ATAGACTACTTTAAACTTAA+CGG | - | chr8_2:54361033-54361052 | Msa1255550:CDS | 20.0% |
!! | TTGTATTTAACACATTAATC+AGG | + | chr8_2:54361060-54361079 | None:intergenic | 20.0% |
! | CGAATATGATATATCGAAAA+TGG | - | chr8_2:54358697-54358716 | Msa1255550:three_prime_UTR | 25.0% |
! | ATTCAAATATTTGTAGAACC+TGG | - | chr8_2:54358860-54358879 | Msa1255550:three_prime_UTR | 25.0% |
!! | TTTCTTTTTGTAAGAGACAT+TGG | - | chr8_2:54359076-54359095 | Msa1255550:intron | 25.0% |
! | AATGCTGTTAAGGAAAAATT+AGG | - | chr8_2:54359351-54359370 | Msa1255550:intron | 25.0% |
! | ATGCTGTTAAGGAAAAATTA+GGG | - | chr8_2:54359352-54359371 | Msa1255550:intron | 25.0% |
! | ATGATCAAACTGTAATGATA+CGG | - | chr8_2:54359601-54359620 | Msa1255550:intron | 25.0% |
!!! | TATGTAGTTGTGTTTTGTTA+AGG | - | chr8_2:54359688-54359707 | Msa1255550:intron | 25.0% |
! | AATAGCAGGTTAAATATTGT+CGG | + | chr8_2:54359839-54359858 | None:intergenic | 25.0% |
!! | ATACCTTTTTGATGAAGAAA+AGG | - | chr8_2:54359931-54359950 | Msa1255550:intron | 25.0% |
! | ATGAAGAAAAGGACATATTT+GGG | - | chr8_2:54359942-54359961 | Msa1255550:intron | 25.0% |
!! | TCCTAACATATTCATTTTGT+AGG | - | chr8_2:54360123-54360142 | Msa1255550:CDS | 25.0% |
! | ACCTACAAAATGAATATGTT+AGG | + | chr8_2:54360127-54360146 | None:intergenic | 25.0% |
! | TGTAAGATGTAAATTCTACT+AGG | + | chr8_2:54360174-54360193 | None:intergenic | 25.0% |
!!! | TAACTAATTTTTTCCAATGC+TGG | - | chr8_2:54360229-54360248 | Msa1255550:intron | 25.0% |
! | AAATTTCTCTACAAAACTTC+AGG | - | chr8_2:54360252-54360271 | Msa1255550:intron | 25.0% |
! | GCTATATTTGGTATTAAAAC+AGG | + | chr8_2:54360649-54360668 | None:intergenic | 25.0% |
!!! | GCAATTTTCTTTGCTATATT+TGG | + | chr8_2:54360661-54360680 | None:intergenic | 25.0% |
! | ATAGAATCAATGACATATCA+GGG | + | chr8_2:54360744-54360763 | None:intergenic | 25.0% |
! | AATAGAATCAATGACATATC+AGG | + | chr8_2:54360745-54360764 | None:intergenic | 25.0% |
!!! | GTCATTGATTCTATTACATA+TGG | - | chr8_2:54360750-54360769 | Msa1255550:intron | 25.0% |
! | TTATTTCCTTGAACATAAGA+TGG | - | chr8_2:54360883-54360902 | Msa1255550:CDS | 25.0% |
! | GCTATTTACAACTAAATGAT+TGG | - | chr8_2:54361106-54361125 | Msa1255550:CDS | 25.0% |
! | ATTTACAACTAAATGATTGG+TGG | - | chr8_2:54361109-54361128 | Msa1255550:CDS | 25.0% |
!! | AACATTTAAAGTGTCCAATA+AGG | - | chr8_2:54361563-54361582 | Msa1255550:CDS | 25.0% |
! | CACATACATAATTTCCTTAT+TGG | + | chr8_2:54361580-54361599 | None:intergenic | 25.0% |
! | TATGTATGTGTAACATTGAA+TGG | - | chr8_2:54361590-54361609 | Msa1255550:CDS | 25.0% |
!! | TTAAATGTGTCTCATCTTTT+AGG | + | chr8_2:54361634-54361653 | None:intergenic | 25.0% |
! | AATTATACTTCGATTCACAA+AGG | + | chr8_2:54361678-54361697 | None:intergenic | 25.0% |
AGTCTGATATAGAAAACCAA+AGG | - | chr8_2:54358756-54358775 | Msa1255550:three_prime_UTR | 30.0% | |
GTCTGATATAGAAAACCAAA+GGG | - | chr8_2:54358757-54358776 | Msa1255550:three_prime_UTR | 30.0% | |
GTATATATTGCTACCAATTG+TGG | + | chr8_2:54358944-54358963 | None:intergenic | 30.0% | |
TACAAAAAGAAAATCCAGGA+CGG | + | chr8_2:54359068-54359087 | None:intergenic | 30.0% | |
CTCTTACAAAAAGAAAATCC+AGG | + | chr8_2:54359072-54359091 | None:intergenic | 30.0% | |
! | TGATAATGAGAATGCTGTTA+AGG | - | chr8_2:54359341-54359360 | Msa1255550:intron | 30.0% |
!! | GTTTTGTTAAGGAGCTAAAT+CGG | - | chr8_2:54359699-54359718 | Msa1255550:intron | 30.0% |
! | ACTCACAAGAATACAGATTT+TGG | - | chr8_2:54359742-54359761 | Msa1255550:CDS | 30.0% |
ATAGCAGGTTAAATATTGTC+GGG | + | chr8_2:54359838-54359857 | None:intergenic | 30.0% | |
! | TGTCCTTTTCTTCATCAAAA+AGG | + | chr8_2:54359937-54359956 | None:intergenic | 30.0% |
GATGAAGAAAAGGACATATT+TGG | - | chr8_2:54359941-54359960 | Msa1255550:intron | 30.0% | |
TGTAAATGGTCGAATCATAT+TGG | - | chr8_2:54359994-54360013 | Msa1255550:intron | 30.0% | |
TAACATATTCAGAACAGCAT+GGG | + | chr8_2:54360064-54360083 | None:intergenic | 30.0% | |
TTAACATATTCAGAACAGCA+TGG | + | chr8_2:54360065-54360084 | None:intergenic | 30.0% | |
!! | TTTCTTCCTTTTTACTGACT+TGG | - | chr8_2:54360623-54360642 | Msa1255550:intron | 30.0% |
!! | TTTTAATTGGCAACATCGTT+AGG | - | chr8_2:54360851-54360870 | Msa1255550:CDS | 30.0% |
TCAAAACCATCTTATGTTCA+AGG | + | chr8_2:54360892-54360911 | None:intergenic | 30.0% | |
AACTCTGTAATCACAAGATT+GGG | + | chr8_2:54361164-54361183 | None:intergenic | 30.0% | |
TAACTCTGTAATCACAAGAT+TGG | + | chr8_2:54361165-54361184 | None:intergenic | 30.0% | |
TGATTACAGAGTTATTGTAG+AGG | - | chr8_2:54361171-54361190 | Msa1255550:CDS | 30.0% | |
GATTACAGAGTTATTGTAGA+GGG | - | chr8_2:54361172-54361191 | Msa1255550:CDS | 30.0% | |
GATTGTAAGCATACACATAT+CGG | - | chr8_2:54361199-54361218 | Msa1255550:CDS | 30.0% | |
! | GCAGTAACTTGTAACAATAA+TGG | + | chr8_2:54361300-54361319 | None:intergenic | 30.0% |
! | AAATGTTGAGGTTCTAGTAA+AGG | + | chr8_2:54361480-54361499 | None:intergenic | 30.0% |
ACAACAACAGAAAAATGTTG+AGG | + | chr8_2:54361492-54361511 | None:intergenic | 30.0% | |
ACAAAAAGAAAATCCAGGAC+GGG | + | chr8_2:54359067-54359086 | None:intergenic | 35.0% | |
CTTTCCTCTTTAATGTACGA+CGG | + | chr8_2:54359137-54359156 | None:intergenic | 35.0% | |
AGGAAAGCTGAAGAAAATTG+CGG | - | chr8_2:54359150-54359169 | Msa1255550:intron | 35.0% | |
GAGATGTTCTTTGCAAAGAA+AGG | + | chr8_2:54359270-54359289 | None:intergenic | 35.0% | |
TTCTTTGCAAAGAACATCTC+AGG | - | chr8_2:54359270-54359289 | Msa1255550:intron | 35.0% | |
AGATCTACTACACATATCAC+AGG | + | chr8_2:54359435-54359454 | None:intergenic | 35.0% | |
ATGTATATCTTCCTAAGCCT+TGG | - | chr8_2:54359490-54359509 | Msa1255550:intron | 35.0% | |
TGTATATCTTCCTAAGCCTT+GGG | - | chr8_2:54359491-54359510 | Msa1255550:intron | 35.0% | |
CTACGCAATTGATGAAGAAT+CGG | + | chr8_2:54359540-54359559 | None:intergenic | 35.0% | |
GAAAAATCACTTCATCCTTG+TGG | - | chr8_2:54359805-54359824 | Msa1255550:CDS | 35.0% | |
!!! | TAACCTGCTATTTTGTTAGC+AGG | - | chr8_2:54359847-54359866 | Msa1255550:CDS | 35.0% |
AAATGGTCGAATCATATTGG+AGG | - | chr8_2:54359997-54360016 | Msa1255550:intron | 35.0% | |
TGTAGAGAAATTTCCAGCAT+TGG | + | chr8_2:54360245-54360264 | None:intergenic | 35.0% | |
TTCTCTACAAAACTTCAGGA+AGG | - | chr8_2:54360256-54360275 | Msa1255550:intron | 35.0% | |
CCAAACAGAATATTGCAGAA+CGG | - | chr8_2:54360328-54360347 | Msa1255550:intron | 35.0% | |
GGTCTTTATGACAGAGAAAA+AGG | - | chr8_2:54360369-54360388 | Msa1255550:intron | 35.0% | |
CTTTATGACAGAGAAAAAGG+TGG | - | chr8_2:54360372-54360391 | Msa1255550:intron | 35.0% | |
!! | ACGTTTGTTATCTGATTCAC+AGG | - | chr8_2:54360450-54360469 | Msa1255550:CDS | 35.0% |
!! | CGTTTGTTATCTGATTCACA+GGG | - | chr8_2:54360451-54360470 | Msa1255550:CDS | 35.0% |
TTATCTGATTCACAGGGATT+CGG | - | chr8_2:54360457-54360476 | Msa1255550:CDS | 35.0% | |
CAAAAGAAGAGATTACGTCT+TGG | + | chr8_2:54360592-54360611 | None:intergenic | 35.0% | |
TGCTAACCATATGAGTAGAT+TGG | - | chr8_2:54360707-54360726 | Msa1255550:intron | 35.0% | |
TTACATATGGCAATGTGTCT+AGG | - | chr8_2:54360763-54360782 | Msa1255550:intron | 35.0% | |
TGTCTAGGTTCATCAATAAC+AGG | - | chr8_2:54360778-54360797 | Msa1255550:intron | 35.0% | |
TAAGTGATGTGTGCATATAG+AGG | + | chr8_2:54361257-54361276 | None:intergenic | 35.0% | |
TTCAAAGATCCACAAAGACA+AGG | + | chr8_2:54361445-54361464 | None:intergenic | 35.0% | |
TTAGACTGTCCAGTATATTG+CGG | - | chr8_2:54361520-54361539 | Msa1255550:CDS | 35.0% | |
CAACTTATTCCGCAATATAC+TGG | + | chr8_2:54361532-54361551 | None:intergenic | 35.0% | |
ACACATTTAACATCTCGTTG+AGG | - | chr8_2:54361644-54361663 | Msa1255550:CDS | 35.0% | |
GAAATGATCTCGTATAGCAG+TGG | - | chr8_2:54358806-54358825 | Msa1255550:three_prime_UTR | 40.0% | |
ATAGCAGTGGAACAGTATCA+AGG | - | chr8_2:54358819-54358838 | Msa1255550:three_prime_UTR | 40.0% | |
TGAATAGCCATTTCATCCAC+AGG | + | chr8_2:54358845-54358864 | None:intergenic | 40.0% | |
ATTTGTAGAACCTGGTACCA+AGG | - | chr8_2:54358868-54358887 | Msa1255550:three_prime_UTR | 40.0% | |
TCGAGCATATGTCAAAGCAA+GGG | - | chr8_2:54358901-54358920 | Msa1255550:three_prime_UTR | 40.0% | |
AAAGTAAGCACTCCCATTTG+TGG | - | chr8_2:54359003-54359022 | Msa1255550:CDS | 40.0% | |
TGTACGACGGTTTGAATTTG+AGG | + | chr8_2:54359124-54359143 | None:intergenic | 40.0% | |
CAAACCGTCGTACATTAAAG+AGG | - | chr8_2:54359130-54359149 | Msa1255550:intron | 40.0% | |
AAAGCTGAAGAAAATTGCGG+TGG | - | chr8_2:54359153-54359172 | Msa1255550:intron | 40.0% | |
ATCCATGCAAATCAGGTTCT+GGG | + | chr8_2:54359181-54359200 | None:intergenic | 40.0% | |
AATCCATGCAAATCAGGTTC+TGG | + | chr8_2:54359182-54359201 | None:intergenic | 40.0% | |
! | GAACCTGATTTGCATGGATT+TGG | - | chr8_2:54359182-54359201 | Msa1255550:CDS | 40.0% |
ACACCAAATCCATGCAAATC+AGG | + | chr8_2:54359188-54359207 | None:intergenic | 40.0% | |
!! | GATTTGCATGGATTTGGTGT+TGG | - | chr8_2:54359188-54359207 | Msa1255550:CDS | 40.0% |
! | TTGATCTCCAATGGACTTTC+CGG | + | chr8_2:54359219-54359238 | None:intergenic | 40.0% |
AACACTGGATTGATCTCCAA+TGG | + | chr8_2:54359228-54359247 | None:intergenic | 40.0% | |
ATTGGAGATCAATCCAGTGT+TGG | - | chr8_2:54359227-54359246 | Msa1255550:CDS | 40.0% | |
! | ACATCATTGATGACCAACAC+TGG | + | chr8_2:54359243-54359262 | None:intergenic | 40.0% |
ATGCAATGACCTAAGCTTTG+CGG | - | chr8_2:54359398-54359417 | Msa1255550:intron | 40.0% | |
ACATAGGTAAACATCTCCCA+AGG | + | chr8_2:54359510-54359529 | None:intergenic | 40.0% | |
! | AAGAATCGGCTTTGTCACAT+AGG | + | chr8_2:54359526-54359545 | None:intergenic | 40.0% |
! | ATTGCGTAGTCTTGATTCTG+AGG | - | chr8_2:54359551-54359570 | Msa1255550:intron | 40.0% |
TTGTCGGGAAAAAAACCACA+AGG | + | chr8_2:54359823-54359842 | None:intergenic | 40.0% | |
GATCCTGCTAACAAAATAGC+AGG | + | chr8_2:54359853-54359872 | None:intergenic | 40.0% | |
TATACGTGATCACACGTTTC+AGG | + | chr8_2:54359914-54359933 | None:intergenic | 40.0% | |
GGACATATTTGGGAAACCAA+TGG | - | chr8_2:54359952-54359971 | Msa1255550:intron | 40.0% | |
ATATTTGGGAAACCAATGGC+CGG | - | chr8_2:54359956-54359975 | Msa1255550:intron | 40.0% | |
AGGTTCGCATACGATGTAAA+TGG | - | chr8_2:54359980-54359999 | Msa1255550:intron | 40.0% | |
! | ATTCAGAACAGCATGGGTTA+GGG | + | chr8_2:54360058-54360077 | None:intergenic | 40.0% |
TATTCAGAACAGCATGGGTT+AGG | + | chr8_2:54360059-54360078 | None:intergenic | 40.0% | |
TTCGAGTGTAACGATAAGTG+CGG | - | chr8_2:54360289-54360308 | Msa1255550:intron | 40.0% | |
CTGCAATATTCTGTTTGGAC+AGG | + | chr8_2:54360326-54360345 | None:intergenic | 40.0% | |
CCGTTCTGCAATATTCTGTT+TGG | + | chr8_2:54360331-54360350 | None:intergenic | 40.0% | |
GAACGGAGTTCGTGTTAAAT+TGG | - | chr8_2:54360345-54360364 | Msa1255550:intron | 40.0% | |
ACGTTTGTGTGTGAGTACAT+TGG | - | chr8_2:54360511-54360530 | Msa1255550:CDS | 40.0% | |
AACAGGCCAAGTCAGTAAAA+AGG | + | chr8_2:54360632-54360651 | None:intergenic | 40.0% | |
CTTCGACCAATCTACTCATA+TGG | + | chr8_2:54360716-54360735 | None:intergenic | 40.0% | |
! | CATATGAGTAGATTGGTCGA+AGG | - | chr8_2:54360714-54360733 | Msa1255550:intron | 40.0% |
GTGAACAGTTGACATCAGTA+CGG | - | chr8_2:54361326-54361345 | Msa1255550:CDS | 40.0% | |
GAAGGATATCCTTGTCTTTG+TGG | - | chr8_2:54361433-54361452 | Msa1255550:intron | 40.0% | |
!! | TGTGGATCTTTGAAATGCTG+AGG | - | chr8_2:54361451-54361470 | Msa1255550:intron | 40.0% |
GCAAGCTAAGTGAATCCCTT+TGG | + | chr8_2:54358775-54358794 | None:intergenic | 45.0% | |
ATCAAGGCCTGTGGATGAAA+TGG | - | chr8_2:54358835-54358854 | Msa1255550:three_prime_UTR | 45.0% | |
GTCGAGCATATGTCAAAGCA+AGG | - | chr8_2:54358900-54358919 | Msa1255550:three_prime_UTR | 45.0% | |
GCATATGTCAAAGCAAGGGA+AGG | - | chr8_2:54358905-54358924 | Msa1255550:three_prime_UTR | 45.0% | |
CAGTGTGTGAGAACCACAAT+TGG | - | chr8_2:54358928-54358947 | Msa1255550:exon | 45.0% | |
CCAGTTGTACCTCCACAAAT+GGG | + | chr8_2:54359018-54359037 | None:intergenic | 45.0% | |
ACCAGTTGTACCTCCACAAA+TGG | + | chr8_2:54359019-54359038 | None:intergenic | 45.0% | |
! | GACGGTTTGAATTTGAGGTC+TGG | + | chr8_2:54359119-54359138 | None:intergenic | 45.0% |
! | TTCCCAGAACCTGATTTGCA+TGG | - | chr8_2:54359176-54359195 | Msa1255550:intron | 45.0% |
AAAATTAGGGTCGTCGCGAA+AGG | - | chr8_2:54359365-54359384 | Msa1255550:intron | 45.0% | |
TTGATTCTGCCGCAAAGCTT+AGG | + | chr8_2:54359410-54359429 | None:intergenic | 45.0% | |
GTAAACATCTCCCAAGGCTT+AGG | + | chr8_2:54359504-54359523 | None:intergenic | 45.0% | |
TACATCGTATGCGAACCTTC+CGG | + | chr8_2:54359978-54359997 | None:intergenic | 45.0% | |
CGGAGTTCGTGTTAAATTGG+AGG | - | chr8_2:54360348-54360367 | Msa1255550:intron | 45.0% | |
ATTCACAGGGATTCGGAGTA+AGG | - | chr8_2:54360464-54360483 | Msa1255550:CDS | 45.0% | |
TTCACAGGGATTCGGAGTAA+GGG | - | chr8_2:54360465-54360484 | Msa1255550:CDS | 45.0% | |
!!! | TGGTGAAGTTTTAGAGCAGC+AGG | - | chr8_2:54360531-54360550 | Msa1255550:intron | 45.0% |
!!! | TGAAGTTTTAGAGCAGCAGG+AGG | - | chr8_2:54360534-54360553 | Msa1255550:intron | 45.0% |
CAGAGTTATTGTAGAGGGCA+CGG | - | chr8_2:54361177-54361196 | Msa1255550:CDS | 45.0% | |
TGGAACAGTATCAAGGCCTG+TGG | - | chr8_2:54358826-54358845 | Msa1255550:three_prime_UTR | 50.0% | |
CATTGTCGATCCTTGGTACC+AGG | + | chr8_2:54358881-54358900 | None:intergenic | 50.0% | |
TGCTCGACATTGTCGATCCT+TGG | + | chr8_2:54358888-54358907 | None:intergenic | 50.0% | |
GTAAGCACTCCCATTTGTGG+AGG | - | chr8_2:54359006-54359025 | Msa1255550:CDS | 50.0% | |
! | CCCATTTGTGGAGGTACAAC+TGG | - | chr8_2:54359015-54359034 | Msa1255550:CDS | 50.0% |
! | TGTGGAGGTACAACTGGTTC+TGG | - | chr8_2:54359021-54359040 | Msa1255550:intron | 50.0% |
! | TGTAAGTATCGTTCCCGTCC+TGG | - | chr8_2:54359051-54359070 | Msa1255550:intron | 50.0% |
ACATTGGCACAAAGCCGAGA+CGG | - | chr8_2:54359092-54359111 | Msa1255550:intron | 50.0% | |
!! | GGATTTGGTGTTGGCACATC+CGG | - | chr8_2:54359197-54359216 | Msa1255550:CDS | 50.0% |
GGCGAAATGCTCAAGCTTTC+TGG | - | chr8_2:54359291-54359310 | Msa1255550:intron | 50.0% | |
TATGAGCCTGTGCTCGTAGA+AGG | - | chr8_2:54361415-54361434 | Msa1255550:intron | 50.0% | |
GGATATCCTTCTACGAGCAC+AGG | + | chr8_2:54361424-54361443 | None:intergenic | 50.0% | |
CATTGGCACAAAGCCGAGAC+GGG | - | chr8_2:54359093-54359112 | Msa1255550:intron | 55.0% | |
! | ATTTGAGGTCTGGCCCGTCT+CGG | + | chr8_2:54359109-54359128 | None:intergenic | 55.0% |
GGCACATCCGGAAAGTCCAT+TGG | - | chr8_2:54359209-54359228 | Msa1255550:CDS | 55.0% | |
TTGGGAAACCAATGGCCGGA+AGG | - | chr8_2:54359960-54359979 | Msa1255550:intron | 55.0% | |
TATGCGAACCTTCCGGCCAT+TGG | + | chr8_2:54359971-54359990 | None:intergenic | 55.0% | |
!! | GCTGGCGAAGCTATTTTGCG+TGG | - | chr8_2:54360487-54360506 | Msa1255550:CDS | 55.0% |
CAGGGATTCGGAGTAAGGGC+TGG | - | chr8_2:54360469-54360488 | Msa1255550:CDS | 60.0% | |
! | CAGGAGGCACACAACAGACG+CGG | - | chr8_2:54360550-54360569 | Msa1255550:intron | 60.0% |
AGGCACACAACAGACGCGGA+AGG | - | chr8_2:54360554-54360573 | Msa1255550:intron | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8_2 | gene | 54358653 | 54361765 | 54358653 | ID=Msa1255550;Name=Msa1255550 |
chr8_2 | mRNA | 54358653 | 54361765 | 54358653 | ID=Msa1255550-mRNA-1;Parent=Msa1255550;Name=Msa1255550-mRNA-1;_AED=0.39;_eAED=0.39;_QI=0|0.5|0.42|1|1|1|7|294|485 |
chr8_2 | exon | 54358653 | 54359039 | 54358653 | ID=Msa1255550-mRNA-1:exon:16829;Parent=Msa1255550-mRNA-1 |
chr8_2 | exon | 54359178 | 54359264 | 54359178 | ID=Msa1255550-mRNA-1:exon:16828;Parent=Msa1255550-mRNA-1 |
chr8_2 | exon | 54359737 | 54359946 | 54359737 | ID=Msa1255550-mRNA-1:exon:16827;Parent=Msa1255550-mRNA-1 |
chr8_2 | exon | 54360049 | 54360144 | 54360049 | ID=Msa1255550-mRNA-1:exon:16826;Parent=Msa1255550-mRNA-1 |
chr8_2 | exon | 54360400 | 54360549 | 54360400 | ID=Msa1255550-mRNA-1:exon:16825;Parent=Msa1255550-mRNA-1 |
chr8_2 | exon | 54360846 | 54361390 | 54360846 | ID=Msa1255550-mRNA-1:exon:16824;Parent=Msa1255550-mRNA-1 |
chr8_2 | exon | 54361489 | 54361765 | 54361489 | ID=Msa1255550-mRNA-1:exon:16823;Parent=Msa1255550-mRNA-1 |
chr8_2 | CDS | 54361489 | 54361765 | 54361489 | ID=Msa1255550-mRNA-1:cds;Parent=Msa1255550-mRNA-1 |
chr8_2 | CDS | 54360846 | 54361390 | 54360846 | ID=Msa1255550-mRNA-1:cds;Parent=Msa1255550-mRNA-1 |
chr8_2 | CDS | 54360400 | 54360549 | 54360400 | ID=Msa1255550-mRNA-1:cds;Parent=Msa1255550-mRNA-1 |
chr8_2 | CDS | 54360049 | 54360144 | 54360049 | ID=Msa1255550-mRNA-1:cds;Parent=Msa1255550-mRNA-1 |
chr8_2 | CDS | 54359737 | 54359946 | 54359737 | ID=Msa1255550-mRNA-1:cds;Parent=Msa1255550-mRNA-1 |
chr8_2 | CDS | 54359178 | 54359264 | 54359178 | ID=Msa1255550-mRNA-1:cds;Parent=Msa1255550-mRNA-1 |
chr8_2 | CDS | 54358947 | 54359039 | 54358947 | ID=Msa1255550-mRNA-1:cds;Parent=Msa1255550-mRNA-1 |
chr8_2 | three_prime_UTR | 54358653 | 54358946 | 54358653 | ID=Msa1255550-mRNA-1:three_prime_utr;Parent=Msa1255550-mRNA-1 |
Gene Sequence |
Protein sequence |