AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1255550


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1255550 MtrunA17_Chr8g0373821 78.399 537 60 7 1 485 1 533 0.0 811
Msa1255550 MtrunA17_Chr5g0403241 53.106 322 116 7 192 485 1188 1502 4.07e-92 306
Msa1255550 MtrunA17_Chr5g0403241 33.793 145 56 2 64 168 492 636 1.03e-13 73.9
Msa1255550 MtrunA17_Chr4g0075321 54.799 323 114 8 190 485 742 1059 4.26e-87 288
Msa1255550 MtrunA17_Chr4g0075321 34.800 250 95 4 13 207 326 562 4.51e-27 115
Msa1255550 MtrunA17_Chr8g0373841 50.667 225 80 5 6 207 20 236 7.49e-49 174
Msa1255550 MtrunA17_Chr4g0075341 44.776 134 65 3 47 175 167 296 1.86e-21 95.9
Msa1255550 MtrunA17_Chr4g0003501 31.455 213 105 7 310 485 742 950 1.02e-18 89.7
Msa1255550 MtrunA17_Chr5g0399801 30.516 213 109 8 310 485 874 1084 4.63e-18 87.8
Msa1255550 MtrunA17_Chr4g0003511 29.358 218 105 7 310 485 837 1047 1.21e-17 86.3
Msa1255550 MtrunA17_Chr7g0255181 27.393 303 166 13 209 485 426 700 1.49e-17 85.9
Msa1255550 MtrunA17_Chr7g0262001 33.149 181 98 5 328 485 517 697 1.32e-16 82.8
Msa1255550 MtrunA17_Chr1g0183321 31.868 182 99 6 328 485 561 741 2.37e-16 82.0
Msa1255550 MtrunA17_Chr1g0190311 31.148 183 100 5 328 485 458 639 5.19e-16 80.9
Msa1255550 MtrunA17_Chr8g0354821 27.778 324 168 14 202 485 386 683 5.39e-15 77.8
Msa1255550 MtrunA17_Chr3g0125251 29.878 164 91 6 336 485 1307 1460 1.42e-11 67.4
Msa1255550 MtrunA17_Chr2g0305371 29.375 160 101 5 332 485 314 467 1.47e-11 66.6
Msa1255550 MtrunA17_Chr1g0170651 27.972 286 162 10 212 485 288 541 6.20e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1255550 AT2G23740.1 45.302 298 127 9 215 485 1082 1370 1.41e-63 224
Msa1255550 AT2G23740.3 45.302 298 127 9 215 485 1089 1377 1.50e-63 224
Msa1255550 AT2G23740.6 45.302 298 127 9 215 485 1089 1377 1.50e-63 224
Msa1255550 AT2G23740.2 45.302 298 127 9 215 485 1089 1377 1.50e-63 224
Msa1255550 AT2G23740.4 56.085 189 65 4 215 392 1089 1270 1.55e-54 197
Msa1255550 AT2G23740.5 56.085 189 65 4 215 392 1089 1270 1.55e-54 197
Msa1255550 AT3G04380.2 28.070 228 119 8 283 485 223 430 8.31e-17 83.2
Msa1255550 AT3G04380.1 28.070 228 119 8 283 485 250 457 9.37e-17 83.2
Msa1255550 AT3G04380.6 28.070 228 119 8 283 485 223 430 1.01e-16 82.8
Msa1255550 AT3G04380.4 28.070 228 119 8 283 485 250 457 1.02e-16 83.2
Msa1255550 AT3G04380.5 28.070 228 119 8 283 485 207 414 1.08e-16 82.8
Msa1255550 AT3G04380.3 28.070 228 119 8 283 485 234 441 1.14e-16 82.8
Msa1255550 AT1G73100.1 28.440 327 156 17 204 485 371 664 5.40e-16 81.3
Msa1255550 AT2G35160.5 29.891 184 99 5 322 485 580 753 5.33e-14 75.1
Msa1255550 AT2G35160.2 29.891 184 99 5 322 485 616 789 5.62e-14 75.1
Msa1255550 AT2G35160.3 29.891 184 99 5 322 485 616 789 5.62e-14 75.1
Msa1255550 AT2G35160.1 29.891 184 99 5 322 485 616 789 5.62e-14 75.1
Msa1255550 AT2G35160.4 29.891 184 99 5 322 485 616 789 5.62e-14 75.1
Msa1255550 AT2G22740.2 26.267 217 114 7 310 485 574 785 7.00e-12 68.6
Msa1255550 AT2G22740.1 26.267 217 114 7 310 485 574 785 7.00e-12 68.6
Msa1255550 AT5G04940.2 24.922 321 174 14 204 485 373 665 5.30e-11 65.5
Msa1255550 AT5G04940.1 24.922 321 174 14 204 485 373 665 5.30e-11 65.5
Msa1255550 AT3G03750.2 28.814 177 104 4 331 485 169 345 8.76e-11 63.9

Find 101 sgRNAs with CRISPR-Local

Find 171 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACATACATAATTTCCTTAT+TGG 0.135814 8_2:+54358819 None:intergenic
GATGAAGAAAAGGACATATT+TGG 0.136959 8_2:-54360455 Msa1255550:CDS
GGCGAAATGCTCAAGCTTTC+TGG 0.183364 8_2:-54361105 Msa1255550:CDS
TTGATCTCCAATGGACTTTC+CGG 0.248032 8_2:+54361180 None:intergenic
CGAATATGATATATCGAAAA+TGG 0.248933 8_2:-54361699 Msa1255550:CDS
ATGAAGAAAAGGACATATTT+GGG 0.300996 8_2:-54360454 Msa1255550:CDS
GAACGGAGTTCGTGTTAAAT+TGG 0.304027 8_2:-54360051 Msa1255550:CDS
AATCCATGCAAATCAGGTTC+TGG 0.312350 8_2:+54361217 None:intergenic
CCGTTCTGCAATATTCTGTT+TGG 0.323633 8_2:+54360068 None:intergenic
AACAGGCCAAGTCAGTAAAA+AGG 0.328103 8_2:+54359767 None:intergenic
CAACTTATTCCGCAATATAC+TGG 0.334368 8_2:+54358867 None:intergenic
TATACGTGATCACACGTTTC+AGG 0.337540 8_2:+54360485 None:intergenic
GCTATATTTGGTATTAAAAC+AGG 0.346709 8_2:+54359750 None:intergenic
TAACTCTGTAATCACAAGAT+TGG 0.374249 8_2:+54359234 None:intergenic
GAACCTGATTTGCATGGATT+TGG 0.375054 8_2:-54361214 Msa1255550:CDS
TGTGGAGGTACAACTGGTTC+TGG 0.375847 8_2:-54361375 Msa1255550:intron
TGTAAATGGTCGAATCATAT+TGG 0.379997 8_2:-54360402 Msa1255550:CDS
GGATTTGGTGTTGGCACATC+CGG 0.380974 8_2:-54361199 Msa1255550:CDS
AGGTTCGCATACGATGTAAA+TGG 0.389210 8_2:-54360416 Msa1255550:CDS
CCCATTTGTGGAGGTACAAC+TGG 0.389596 8_2:-54361381 Msa1255550:intron
AACATTTAAAGTGTCCAATA+AGG 0.399037 8_2:-54358833 Msa1255550:three_prime_UTR
TGTACGACGGTTTGAATTTG+AGG 0.401657 8_2:+54361275 None:intergenic
ATTCACAGGGATTCGGAGTA+AGG 0.405434 8_2:-54359932 Msa1255550:intron
TATGAGCCTGTGCTCGTAGA+AGG 0.406674 8_2:-54358981 Msa1255550:CDS
TTCTTTGCAAAGAACATCTC+AGG 0.407939 8_2:-54361126 Msa1255550:CDS
TGATAATGAGAATGCTGTTA+AGG 0.413807 8_2:-54361055 Msa1255550:CDS
TATGCGAACCTTCCGGCCAT+TGG 0.417185 8_2:+54360428 None:intergenic
TACATCGTATGCGAACCTTC+CGG 0.420636 8_2:+54360421 None:intergenic
TTATCTGATTCACAGGGATT+CGG 0.425686 8_2:-54359939 Msa1255550:intron
GAAGGATATCCTTGTCTTTG+TGG 0.428480 8_2:-54358963 Msa1255550:CDS
AACTCTGTAATCACAAGATT+GGG 0.429228 8_2:+54359235 None:intergenic
TATGTATGTGTAACATTGAA+TGG 0.430897 8_2:-54358806 Msa1255550:three_prime_UTR
GCAAGCTAAGTGAATCCCTT+TGG 0.435509 8_2:+54361624 None:intergenic
ATCAAGGCCTGTGGATGAAA+TGG 0.435866 8_2:-54361561 Msa1255550:CDS
CTGCAATATTCTGTTTGGAC+AGG 0.439001 8_2:+54360073 None:intergenic
GTAAACATCTCCCAAGGCTT+AGG 0.442228 8_2:+54360895 None:intergenic
ACACCAAATCCATGCAAATC+AGG 0.445863 8_2:+54361211 None:intergenic
ATCCATGCAAATCAGGTTCT+GGG 0.447802 8_2:+54361218 None:intergenic
GACGGTTTGAATTTGAGGTC+TGG 0.466441 8_2:+54361280 None:intergenic
TGAATAGCCATTTCATCCAC+AGG 0.471451 8_2:+54361554 None:intergenic
TTGATTCTGCCGCAAAGCTT+AGG 0.472145 8_2:+54360989 None:intergenic
ATGCAATGACCTAAGCTTTG+CGG 0.481210 8_2:-54360998 Msa1255550:CDS
CATTGTCGATCCTTGGTACC+AGG 0.488120 8_2:+54361518 None:intergenic
CTACGCAATTGATGAAGAAT+CGG 0.488801 8_2:+54360859 None:intergenic
ATGTATATCTTCCTAAGCCT+TGG 0.489667 8_2:-54360906 Msa1255550:CDS
TGTATATCTTCCTAAGCCTT+GGG 0.489888 8_2:-54360905 Msa1255550:CDS
GAGATGTTCTTTGCAAAGAA+AGG 0.490990 8_2:+54361129 None:intergenic
TGCTCGACATTGTCGATCCT+TGG 0.497731 8_2:+54361511 None:intergenic
GATTTGCATGGATTTGGTGT+TGG 0.498006 8_2:-54361208 Msa1255550:CDS
GATTGTAAGCATACACATAT+CGG 0.502921 8_2:-54359197 Msa1255550:CDS
TGTAAGTATCGTTCCCGTCC+TGG 0.503749 8_2:-54361345 Msa1255550:CDS
AAATGTTGAGGTTCTAGTAA+AGG 0.506407 8_2:+54358919 None:intergenic
CATTGGCACAAAGCCGAGAC+GGG 0.509657 8_2:-54361303 Msa1255550:CDS
AAAATTAGGGTCGTCGCGAA+AGG 0.515962 8_2:-54361031 Msa1255550:CDS
CGGAGTTCGTGTTAAATTGG+AGG 0.527617 8_2:-54360048 Msa1255550:intron
CAAACCGTCGTACATTAAAG+AGG 0.536529 8_2:-54361266 Msa1255550:CDS
TTCCCAGAACCTGATTTGCA+TGG 0.538009 8_2:-54361220 Msa1255550:CDS
ATTTGAGGTCTGGCCCGTCT+CGG 0.538631 8_2:+54361290 None:intergenic
GGCACATCCGGAAAGTCCAT+TGG 0.540615 8_2:-54361187 Msa1255550:CDS
CAGGGATTCGGAGTAAGGGC+TGG 0.542170 8_2:-54359927 Msa1255550:CDS
CAGAGTTATTGTAGAGGGCA+CGG 0.549634 8_2:-54359219 Msa1255550:CDS
AACACTGGATTGATCTCCAA+TGG 0.550234 8_2:+54361171 None:intergenic
ATTTGTAGAACCTGGTACCA+AGG 0.559017 8_2:-54361528 Msa1255550:CDS
AAGAATCGGCTTTGTCACAT+AGG 0.562883 8_2:+54360873 None:intergenic
GTCGAGCATATGTCAAAGCA+AGG 0.566844 8_2:-54361496 Msa1255550:CDS
GTCTGATATAGAAAACCAAA+GGG 0.569533 8_2:-54361639 Msa1255550:CDS
ATTCAAATATTTGTAGAACC+TGG 0.571965 8_2:-54361536 Msa1255550:CDS
ACATCATTGATGACCAACAC+TGG 0.573744 8_2:+54361156 None:intergenic
ACATTGGCACAAAGCCGAGA+CGG 0.573840 8_2:-54361304 Msa1255550:CDS
ATTGCGTAGTCTTGATTCTG+AGG 0.575859 8_2:-54360845 Msa1255550:intron
AGTCTGATATAGAAAACCAA+AGG 0.577396 8_2:-54361640 Msa1255550:CDS
CAAAAGAAGAGATTACGTCT+TGG 0.579395 8_2:+54359807 None:intergenic
ATAGCAGTGGAACAGTATCA+AGG 0.585597 8_2:-54361577 Msa1255550:CDS
CTTTCCTCTTTAATGTACGA+CGG 0.585682 8_2:+54361262 None:intergenic
TTCACAGGGATTCGGAGTAA+GGG 0.591817 8_2:-54359931 Msa1255550:intron
GGATATCCTTCTACGAGCAC+AGG 0.594050 8_2:+54358975 None:intergenic
AAATGGTCGAATCATATTGG+AGG 0.599006 8_2:-54360399 Msa1255550:intron
CAGGAGGCACACAACAGACG+CGG 0.600597 8_2:-54359846 Msa1255550:CDS
TTAGACTGTCCAGTATATTG+CGG 0.600785 8_2:-54358876 Msa1255550:three_prime_UTR
TGTGGATCTTTGAAATGCTG+AGG 0.600856 8_2:-54358945 Msa1255550:exon
TTGGGAAACCAATGGCCGGA+AGG 0.605290 8_2:-54360436 Msa1255550:CDS
GATTACAGAGTTATTGTAGA+GGG 0.611271 8_2:-54359224 Msa1255550:CDS
ATTGGAGATCAATCCAGTGT+TGG 0.619835 8_2:-54361169 Msa1255550:CDS
AATTATACTTCGATTCACAA+AGG 0.622152 8_2:+54358721 None:intergenic
ATATTTGGGAAACCAATGGC+CGG 0.622843 8_2:-54360440 Msa1255550:CDS
AGATCTACTACACATATCAC+AGG 0.627421 8_2:+54360964 None:intergenic
GGACATATTTGGGAAACCAA+TGG 0.633831 8_2:-54360444 Msa1255550:CDS
GCATATGTCAAAGCAAGGGA+AGG 0.636728 8_2:-54361491 Msa1255550:CDS
GAAATGATCTCGTATAGCAG+TGG 0.636945 8_2:-54361590 Msa1255550:CDS
TGGAACAGTATCAAGGCCTG+TGG 0.639274 8_2:-54361570 Msa1255550:CDS
TTCAAAGATCCACAAAGACA+AGG 0.641053 8_2:+54358954 None:intergenic
TCGAGCATATGTCAAAGCAA+GGG 0.655487 8_2:-54361495 Msa1255550:CDS
TGATTACAGAGTTATTGTAG+AGG 0.655560 8_2:-54359225 Msa1255550:CDS
ACGTTTGTGTGTGAGTACAT+TGG 0.657919 8_2:-54359885 Msa1255550:CDS
AGGCACACAACAGACGCGGA+AGG 0.658214 8_2:-54359842 Msa1255550:CDS
ACATAGGTAAACATCTCCCA+AGG 0.667902 8_2:+54360889 None:intergenic
CCAAACAGAATATTGCAGAA+CGG 0.677454 8_2:-54360068 Msa1255550:CDS
AGGAAAGCTGAAGAAAATTG+CGG 0.686851 8_2:-54361246 Msa1255550:CDS
ACACATTTAACATCTCGTTG+AGG 0.700034 8_2:-54358752 Msa1255550:three_prime_UTR
AAAGCTGAAGAAAATTGCGG+TGG 0.708696 8_2:-54361243 Msa1255550:CDS
TTCGAGTGTAACGATAAGTG+CGG 0.716852 8_2:-54360107 Msa1255550:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATTGTAGTTTACAATTAA+TGG + chr8_2:54360033-54360052 None:intergenic 15.0%
!! TGGCATTTAAAAAGAAAAAT+TGG - chr8_2:54359762-54359781 Msa1255550:CDS 20.0%
!!! ATTTTAGCATATTCTTGATA+TGG + chr8_2:54360104-54360123 None:intergenic 20.0%
!! GATAAGACAAAAAATTAACA+TGG - chr8_2:54360814-54360833 Msa1255550:intron 20.0%
!!! GCAATTTGTTCATTTTTAAT+TGG - chr8_2:54360838-54360857 Msa1255550:intron 20.0%
!!! CTACACATTTAATAACTTTT+TGG + chr8_2:54360951-54360970 None:intergenic 20.0%
!! ATAGACTACTTTAAACTTAA+CGG - chr8_2:54361033-54361052 Msa1255550:CDS 20.0%
!! TTGTATTTAACACATTAATC+AGG + chr8_2:54361060-54361079 None:intergenic 20.0%
! CGAATATGATATATCGAAAA+TGG - chr8_2:54358697-54358716 Msa1255550:three_prime_UTR 25.0%
! ATTCAAATATTTGTAGAACC+TGG - chr8_2:54358860-54358879 Msa1255550:three_prime_UTR 25.0%
!! TTTCTTTTTGTAAGAGACAT+TGG - chr8_2:54359076-54359095 Msa1255550:intron 25.0%
! AATGCTGTTAAGGAAAAATT+AGG - chr8_2:54359351-54359370 Msa1255550:intron 25.0%
! ATGCTGTTAAGGAAAAATTA+GGG - chr8_2:54359352-54359371 Msa1255550:intron 25.0%
! ATGATCAAACTGTAATGATA+CGG - chr8_2:54359601-54359620 Msa1255550:intron 25.0%
!!! TATGTAGTTGTGTTTTGTTA+AGG - chr8_2:54359688-54359707 Msa1255550:intron 25.0%
! AATAGCAGGTTAAATATTGT+CGG + chr8_2:54359839-54359858 None:intergenic 25.0%
!! ATACCTTTTTGATGAAGAAA+AGG - chr8_2:54359931-54359950 Msa1255550:intron 25.0%
! ATGAAGAAAAGGACATATTT+GGG - chr8_2:54359942-54359961 Msa1255550:intron 25.0%
!! TCCTAACATATTCATTTTGT+AGG - chr8_2:54360123-54360142 Msa1255550:CDS 25.0%
! ACCTACAAAATGAATATGTT+AGG + chr8_2:54360127-54360146 None:intergenic 25.0%
! TGTAAGATGTAAATTCTACT+AGG + chr8_2:54360174-54360193 None:intergenic 25.0%
!!! TAACTAATTTTTTCCAATGC+TGG - chr8_2:54360229-54360248 Msa1255550:intron 25.0%
! AAATTTCTCTACAAAACTTC+AGG - chr8_2:54360252-54360271 Msa1255550:intron 25.0%
! GCTATATTTGGTATTAAAAC+AGG + chr8_2:54360649-54360668 None:intergenic 25.0%
!!! GCAATTTTCTTTGCTATATT+TGG + chr8_2:54360661-54360680 None:intergenic 25.0%
! ATAGAATCAATGACATATCA+GGG + chr8_2:54360744-54360763 None:intergenic 25.0%
! AATAGAATCAATGACATATC+AGG + chr8_2:54360745-54360764 None:intergenic 25.0%
!!! GTCATTGATTCTATTACATA+TGG - chr8_2:54360750-54360769 Msa1255550:intron 25.0%
! TTATTTCCTTGAACATAAGA+TGG - chr8_2:54360883-54360902 Msa1255550:CDS 25.0%
! GCTATTTACAACTAAATGAT+TGG - chr8_2:54361106-54361125 Msa1255550:CDS 25.0%
! ATTTACAACTAAATGATTGG+TGG - chr8_2:54361109-54361128 Msa1255550:CDS 25.0%
!! AACATTTAAAGTGTCCAATA+AGG - chr8_2:54361563-54361582 Msa1255550:CDS 25.0%
! CACATACATAATTTCCTTAT+TGG + chr8_2:54361580-54361599 None:intergenic 25.0%
! TATGTATGTGTAACATTGAA+TGG - chr8_2:54361590-54361609 Msa1255550:CDS 25.0%
!! TTAAATGTGTCTCATCTTTT+AGG + chr8_2:54361634-54361653 None:intergenic 25.0%
! AATTATACTTCGATTCACAA+AGG + chr8_2:54361678-54361697 None:intergenic 25.0%
AGTCTGATATAGAAAACCAA+AGG - chr8_2:54358756-54358775 Msa1255550:three_prime_UTR 30.0%
GTCTGATATAGAAAACCAAA+GGG - chr8_2:54358757-54358776 Msa1255550:three_prime_UTR 30.0%
GTATATATTGCTACCAATTG+TGG + chr8_2:54358944-54358963 None:intergenic 30.0%
TACAAAAAGAAAATCCAGGA+CGG + chr8_2:54359068-54359087 None:intergenic 30.0%
CTCTTACAAAAAGAAAATCC+AGG + chr8_2:54359072-54359091 None:intergenic 30.0%
! TGATAATGAGAATGCTGTTA+AGG - chr8_2:54359341-54359360 Msa1255550:intron 30.0%
!! GTTTTGTTAAGGAGCTAAAT+CGG - chr8_2:54359699-54359718 Msa1255550:intron 30.0%
! ACTCACAAGAATACAGATTT+TGG - chr8_2:54359742-54359761 Msa1255550:CDS 30.0%
ATAGCAGGTTAAATATTGTC+GGG + chr8_2:54359838-54359857 None:intergenic 30.0%
! TGTCCTTTTCTTCATCAAAA+AGG + chr8_2:54359937-54359956 None:intergenic 30.0%
GATGAAGAAAAGGACATATT+TGG - chr8_2:54359941-54359960 Msa1255550:intron 30.0%
TGTAAATGGTCGAATCATAT+TGG - chr8_2:54359994-54360013 Msa1255550:intron 30.0%
TAACATATTCAGAACAGCAT+GGG + chr8_2:54360064-54360083 None:intergenic 30.0%
TTAACATATTCAGAACAGCA+TGG + chr8_2:54360065-54360084 None:intergenic 30.0%
!! TTTCTTCCTTTTTACTGACT+TGG - chr8_2:54360623-54360642 Msa1255550:intron 30.0%
!! TTTTAATTGGCAACATCGTT+AGG - chr8_2:54360851-54360870 Msa1255550:CDS 30.0%
TCAAAACCATCTTATGTTCA+AGG + chr8_2:54360892-54360911 None:intergenic 30.0%
AACTCTGTAATCACAAGATT+GGG + chr8_2:54361164-54361183 None:intergenic 30.0%
TAACTCTGTAATCACAAGAT+TGG + chr8_2:54361165-54361184 None:intergenic 30.0%
TGATTACAGAGTTATTGTAG+AGG - chr8_2:54361171-54361190 Msa1255550:CDS 30.0%
GATTACAGAGTTATTGTAGA+GGG - chr8_2:54361172-54361191 Msa1255550:CDS 30.0%
GATTGTAAGCATACACATAT+CGG - chr8_2:54361199-54361218 Msa1255550:CDS 30.0%
! GCAGTAACTTGTAACAATAA+TGG + chr8_2:54361300-54361319 None:intergenic 30.0%
! AAATGTTGAGGTTCTAGTAA+AGG + chr8_2:54361480-54361499 None:intergenic 30.0%
ACAACAACAGAAAAATGTTG+AGG + chr8_2:54361492-54361511 None:intergenic 30.0%
ACAAAAAGAAAATCCAGGAC+GGG + chr8_2:54359067-54359086 None:intergenic 35.0%
CTTTCCTCTTTAATGTACGA+CGG + chr8_2:54359137-54359156 None:intergenic 35.0%
AGGAAAGCTGAAGAAAATTG+CGG - chr8_2:54359150-54359169 Msa1255550:intron 35.0%
GAGATGTTCTTTGCAAAGAA+AGG + chr8_2:54359270-54359289 None:intergenic 35.0%
TTCTTTGCAAAGAACATCTC+AGG - chr8_2:54359270-54359289 Msa1255550:intron 35.0%
AGATCTACTACACATATCAC+AGG + chr8_2:54359435-54359454 None:intergenic 35.0%
ATGTATATCTTCCTAAGCCT+TGG - chr8_2:54359490-54359509 Msa1255550:intron 35.0%
TGTATATCTTCCTAAGCCTT+GGG - chr8_2:54359491-54359510 Msa1255550:intron 35.0%
CTACGCAATTGATGAAGAAT+CGG + chr8_2:54359540-54359559 None:intergenic 35.0%
GAAAAATCACTTCATCCTTG+TGG - chr8_2:54359805-54359824 Msa1255550:CDS 35.0%
!!! TAACCTGCTATTTTGTTAGC+AGG - chr8_2:54359847-54359866 Msa1255550:CDS 35.0%
AAATGGTCGAATCATATTGG+AGG - chr8_2:54359997-54360016 Msa1255550:intron 35.0%
TGTAGAGAAATTTCCAGCAT+TGG + chr8_2:54360245-54360264 None:intergenic 35.0%
TTCTCTACAAAACTTCAGGA+AGG - chr8_2:54360256-54360275 Msa1255550:intron 35.0%
CCAAACAGAATATTGCAGAA+CGG - chr8_2:54360328-54360347 Msa1255550:intron 35.0%
GGTCTTTATGACAGAGAAAA+AGG - chr8_2:54360369-54360388 Msa1255550:intron 35.0%
CTTTATGACAGAGAAAAAGG+TGG - chr8_2:54360372-54360391 Msa1255550:intron 35.0%
!! ACGTTTGTTATCTGATTCAC+AGG - chr8_2:54360450-54360469 Msa1255550:CDS 35.0%
!! CGTTTGTTATCTGATTCACA+GGG - chr8_2:54360451-54360470 Msa1255550:CDS 35.0%
TTATCTGATTCACAGGGATT+CGG - chr8_2:54360457-54360476 Msa1255550:CDS 35.0%
CAAAAGAAGAGATTACGTCT+TGG + chr8_2:54360592-54360611 None:intergenic 35.0%
TGCTAACCATATGAGTAGAT+TGG - chr8_2:54360707-54360726 Msa1255550:intron 35.0%
TTACATATGGCAATGTGTCT+AGG - chr8_2:54360763-54360782 Msa1255550:intron 35.0%
TGTCTAGGTTCATCAATAAC+AGG - chr8_2:54360778-54360797 Msa1255550:intron 35.0%
TAAGTGATGTGTGCATATAG+AGG + chr8_2:54361257-54361276 None:intergenic 35.0%
TTCAAAGATCCACAAAGACA+AGG + chr8_2:54361445-54361464 None:intergenic 35.0%
TTAGACTGTCCAGTATATTG+CGG - chr8_2:54361520-54361539 Msa1255550:CDS 35.0%
CAACTTATTCCGCAATATAC+TGG + chr8_2:54361532-54361551 None:intergenic 35.0%
ACACATTTAACATCTCGTTG+AGG - chr8_2:54361644-54361663 Msa1255550:CDS 35.0%
GAAATGATCTCGTATAGCAG+TGG - chr8_2:54358806-54358825 Msa1255550:three_prime_UTR 40.0%
ATAGCAGTGGAACAGTATCA+AGG - chr8_2:54358819-54358838 Msa1255550:three_prime_UTR 40.0%
TGAATAGCCATTTCATCCAC+AGG + chr8_2:54358845-54358864 None:intergenic 40.0%
ATTTGTAGAACCTGGTACCA+AGG - chr8_2:54358868-54358887 Msa1255550:three_prime_UTR 40.0%
TCGAGCATATGTCAAAGCAA+GGG - chr8_2:54358901-54358920 Msa1255550:three_prime_UTR 40.0%
AAAGTAAGCACTCCCATTTG+TGG - chr8_2:54359003-54359022 Msa1255550:CDS 40.0%
TGTACGACGGTTTGAATTTG+AGG + chr8_2:54359124-54359143 None:intergenic 40.0%
CAAACCGTCGTACATTAAAG+AGG - chr8_2:54359130-54359149 Msa1255550:intron 40.0%
AAAGCTGAAGAAAATTGCGG+TGG - chr8_2:54359153-54359172 Msa1255550:intron 40.0%
ATCCATGCAAATCAGGTTCT+GGG + chr8_2:54359181-54359200 None:intergenic 40.0%
AATCCATGCAAATCAGGTTC+TGG + chr8_2:54359182-54359201 None:intergenic 40.0%
! GAACCTGATTTGCATGGATT+TGG - chr8_2:54359182-54359201 Msa1255550:CDS 40.0%
ACACCAAATCCATGCAAATC+AGG + chr8_2:54359188-54359207 None:intergenic 40.0%
!! GATTTGCATGGATTTGGTGT+TGG - chr8_2:54359188-54359207 Msa1255550:CDS 40.0%
! TTGATCTCCAATGGACTTTC+CGG + chr8_2:54359219-54359238 None:intergenic 40.0%
AACACTGGATTGATCTCCAA+TGG + chr8_2:54359228-54359247 None:intergenic 40.0%
ATTGGAGATCAATCCAGTGT+TGG - chr8_2:54359227-54359246 Msa1255550:CDS 40.0%
! ACATCATTGATGACCAACAC+TGG + chr8_2:54359243-54359262 None:intergenic 40.0%
ATGCAATGACCTAAGCTTTG+CGG - chr8_2:54359398-54359417 Msa1255550:intron 40.0%
ACATAGGTAAACATCTCCCA+AGG + chr8_2:54359510-54359529 None:intergenic 40.0%
! AAGAATCGGCTTTGTCACAT+AGG + chr8_2:54359526-54359545 None:intergenic 40.0%
! ATTGCGTAGTCTTGATTCTG+AGG - chr8_2:54359551-54359570 Msa1255550:intron 40.0%
TTGTCGGGAAAAAAACCACA+AGG + chr8_2:54359823-54359842 None:intergenic 40.0%
GATCCTGCTAACAAAATAGC+AGG + chr8_2:54359853-54359872 None:intergenic 40.0%
TATACGTGATCACACGTTTC+AGG + chr8_2:54359914-54359933 None:intergenic 40.0%
GGACATATTTGGGAAACCAA+TGG - chr8_2:54359952-54359971 Msa1255550:intron 40.0%
ATATTTGGGAAACCAATGGC+CGG - chr8_2:54359956-54359975 Msa1255550:intron 40.0%
AGGTTCGCATACGATGTAAA+TGG - chr8_2:54359980-54359999 Msa1255550:intron 40.0%
! ATTCAGAACAGCATGGGTTA+GGG + chr8_2:54360058-54360077 None:intergenic 40.0%
TATTCAGAACAGCATGGGTT+AGG + chr8_2:54360059-54360078 None:intergenic 40.0%
TTCGAGTGTAACGATAAGTG+CGG - chr8_2:54360289-54360308 Msa1255550:intron 40.0%
CTGCAATATTCTGTTTGGAC+AGG + chr8_2:54360326-54360345 None:intergenic 40.0%
CCGTTCTGCAATATTCTGTT+TGG + chr8_2:54360331-54360350 None:intergenic 40.0%
GAACGGAGTTCGTGTTAAAT+TGG - chr8_2:54360345-54360364 Msa1255550:intron 40.0%
ACGTTTGTGTGTGAGTACAT+TGG - chr8_2:54360511-54360530 Msa1255550:CDS 40.0%
AACAGGCCAAGTCAGTAAAA+AGG + chr8_2:54360632-54360651 None:intergenic 40.0%
CTTCGACCAATCTACTCATA+TGG + chr8_2:54360716-54360735 None:intergenic 40.0%
! CATATGAGTAGATTGGTCGA+AGG - chr8_2:54360714-54360733 Msa1255550:intron 40.0%
GTGAACAGTTGACATCAGTA+CGG - chr8_2:54361326-54361345 Msa1255550:CDS 40.0%
GAAGGATATCCTTGTCTTTG+TGG - chr8_2:54361433-54361452 Msa1255550:intron 40.0%
!! TGTGGATCTTTGAAATGCTG+AGG - chr8_2:54361451-54361470 Msa1255550:intron 40.0%
GCAAGCTAAGTGAATCCCTT+TGG + chr8_2:54358775-54358794 None:intergenic 45.0%
ATCAAGGCCTGTGGATGAAA+TGG - chr8_2:54358835-54358854 Msa1255550:three_prime_UTR 45.0%
GTCGAGCATATGTCAAAGCA+AGG - chr8_2:54358900-54358919 Msa1255550:three_prime_UTR 45.0%
GCATATGTCAAAGCAAGGGA+AGG - chr8_2:54358905-54358924 Msa1255550:three_prime_UTR 45.0%
CAGTGTGTGAGAACCACAAT+TGG - chr8_2:54358928-54358947 Msa1255550:exon 45.0%
CCAGTTGTACCTCCACAAAT+GGG + chr8_2:54359018-54359037 None:intergenic 45.0%
ACCAGTTGTACCTCCACAAA+TGG + chr8_2:54359019-54359038 None:intergenic 45.0%
! GACGGTTTGAATTTGAGGTC+TGG + chr8_2:54359119-54359138 None:intergenic 45.0%
! TTCCCAGAACCTGATTTGCA+TGG - chr8_2:54359176-54359195 Msa1255550:intron 45.0%
AAAATTAGGGTCGTCGCGAA+AGG - chr8_2:54359365-54359384 Msa1255550:intron 45.0%
TTGATTCTGCCGCAAAGCTT+AGG + chr8_2:54359410-54359429 None:intergenic 45.0%
GTAAACATCTCCCAAGGCTT+AGG + chr8_2:54359504-54359523 None:intergenic 45.0%
TACATCGTATGCGAACCTTC+CGG + chr8_2:54359978-54359997 None:intergenic 45.0%
CGGAGTTCGTGTTAAATTGG+AGG - chr8_2:54360348-54360367 Msa1255550:intron 45.0%
ATTCACAGGGATTCGGAGTA+AGG - chr8_2:54360464-54360483 Msa1255550:CDS 45.0%
TTCACAGGGATTCGGAGTAA+GGG - chr8_2:54360465-54360484 Msa1255550:CDS 45.0%
!!! TGGTGAAGTTTTAGAGCAGC+AGG - chr8_2:54360531-54360550 Msa1255550:intron 45.0%
!!! TGAAGTTTTAGAGCAGCAGG+AGG - chr8_2:54360534-54360553 Msa1255550:intron 45.0%
CAGAGTTATTGTAGAGGGCA+CGG - chr8_2:54361177-54361196 Msa1255550:CDS 45.0%
TGGAACAGTATCAAGGCCTG+TGG - chr8_2:54358826-54358845 Msa1255550:three_prime_UTR 50.0%
CATTGTCGATCCTTGGTACC+AGG + chr8_2:54358881-54358900 None:intergenic 50.0%
TGCTCGACATTGTCGATCCT+TGG + chr8_2:54358888-54358907 None:intergenic 50.0%
GTAAGCACTCCCATTTGTGG+AGG - chr8_2:54359006-54359025 Msa1255550:CDS 50.0%
! CCCATTTGTGGAGGTACAAC+TGG - chr8_2:54359015-54359034 Msa1255550:CDS 50.0%
! TGTGGAGGTACAACTGGTTC+TGG - chr8_2:54359021-54359040 Msa1255550:intron 50.0%
! TGTAAGTATCGTTCCCGTCC+TGG - chr8_2:54359051-54359070 Msa1255550:intron 50.0%
ACATTGGCACAAAGCCGAGA+CGG - chr8_2:54359092-54359111 Msa1255550:intron 50.0%
!! GGATTTGGTGTTGGCACATC+CGG - chr8_2:54359197-54359216 Msa1255550:CDS 50.0%
GGCGAAATGCTCAAGCTTTC+TGG - chr8_2:54359291-54359310 Msa1255550:intron 50.0%
TATGAGCCTGTGCTCGTAGA+AGG - chr8_2:54361415-54361434 Msa1255550:intron 50.0%
GGATATCCTTCTACGAGCAC+AGG + chr8_2:54361424-54361443 None:intergenic 50.0%
CATTGGCACAAAGCCGAGAC+GGG - chr8_2:54359093-54359112 Msa1255550:intron 55.0%
! ATTTGAGGTCTGGCCCGTCT+CGG + chr8_2:54359109-54359128 None:intergenic 55.0%
GGCACATCCGGAAAGTCCAT+TGG - chr8_2:54359209-54359228 Msa1255550:CDS 55.0%
TTGGGAAACCAATGGCCGGA+AGG - chr8_2:54359960-54359979 Msa1255550:intron 55.0%
TATGCGAACCTTCCGGCCAT+TGG + chr8_2:54359971-54359990 None:intergenic 55.0%
!! GCTGGCGAAGCTATTTTGCG+TGG - chr8_2:54360487-54360506 Msa1255550:CDS 55.0%
CAGGGATTCGGAGTAAGGGC+TGG - chr8_2:54360469-54360488 Msa1255550:CDS 60.0%
! CAGGAGGCACACAACAGACG+CGG - chr8_2:54360550-54360569 Msa1255550:intron 60.0%
AGGCACACAACAGACGCGGA+AGG - chr8_2:54360554-54360573 Msa1255550:intron 60.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 54358653 54361765 54358653 ID=Msa1255550;Name=Msa1255550
chr8_2 mRNA 54358653 54361765 54358653 ID=Msa1255550-mRNA-1;Parent=Msa1255550;Name=Msa1255550-mRNA-1;_AED=0.39;_eAED=0.39;_QI=0|0.5|0.42|1|1|1|7|294|485
chr8_2 exon 54358653 54359039 54358653 ID=Msa1255550-mRNA-1:exon:16829;Parent=Msa1255550-mRNA-1
chr8_2 exon 54359178 54359264 54359178 ID=Msa1255550-mRNA-1:exon:16828;Parent=Msa1255550-mRNA-1
chr8_2 exon 54359737 54359946 54359737 ID=Msa1255550-mRNA-1:exon:16827;Parent=Msa1255550-mRNA-1
chr8_2 exon 54360049 54360144 54360049 ID=Msa1255550-mRNA-1:exon:16826;Parent=Msa1255550-mRNA-1
chr8_2 exon 54360400 54360549 54360400 ID=Msa1255550-mRNA-1:exon:16825;Parent=Msa1255550-mRNA-1
chr8_2 exon 54360846 54361390 54360846 ID=Msa1255550-mRNA-1:exon:16824;Parent=Msa1255550-mRNA-1
chr8_2 exon 54361489 54361765 54361489 ID=Msa1255550-mRNA-1:exon:16823;Parent=Msa1255550-mRNA-1
chr8_2 CDS 54361489 54361765 54361489 ID=Msa1255550-mRNA-1:cds;Parent=Msa1255550-mRNA-1
chr8_2 CDS 54360846 54361390 54360846 ID=Msa1255550-mRNA-1:cds;Parent=Msa1255550-mRNA-1
chr8_2 CDS 54360400 54360549 54360400 ID=Msa1255550-mRNA-1:cds;Parent=Msa1255550-mRNA-1
chr8_2 CDS 54360049 54360144 54360049 ID=Msa1255550-mRNA-1:cds;Parent=Msa1255550-mRNA-1
chr8_2 CDS 54359737 54359946 54359737 ID=Msa1255550-mRNA-1:cds;Parent=Msa1255550-mRNA-1
chr8_2 CDS 54359178 54359264 54359178 ID=Msa1255550-mRNA-1:cds;Parent=Msa1255550-mRNA-1
chr8_2 CDS 54358947 54359039 54358947 ID=Msa1255550-mRNA-1:cds;Parent=Msa1255550-mRNA-1
chr8_2 three_prime_UTR 54358653 54358946 54358653 ID=Msa1255550-mRNA-1:three_prime_utr;Parent=Msa1255550-mRNA-1
Gene Sequence

>Msa1255550

ATGGCAATGCTTCATAATGAAGAACATATTTGCGTTGTAAATCGCGAATATGATATATCGAAAATGGATGATGAACTCAGCGACAGTTCAGTTGTAATGAAAGAGTCTGATATAGAAAACCAAAGGGATTCACTTAGCTTGCAAGAATCTACAGAAATGATCTCGTATAGCAGTGGAACAGTATCAAGGCCTGTGGATGAAATGGCTATTCAAATATTTGTAGAACCTGGTACCAAGGATCGACAATGTCGAGCATATGTCAAAGCAAGGGAAGGCAGTACAACTGGTTCTGGTATTAGCTGTAAGTATCGTTCCCGTCCTGGATTTTCTTTTTGTAAGAGACATTGGCACAAAGCCGAGACGGGCCAGACCTCAAATTCAAACCGTCGTACATTAAAGAGGAAAGCTGAAGAAAATTGCGGTGGTTCCCAGAACCTGATTTGCATGGATTTGGTGTTGGCACATCCGGAAAGTCCATTGGAGATCAATCCAGTGTTGGTCATCAATGATGTTGATCCTTTCTTTGCAAAGAACATCTCAGGCGAAATGCTCAAGCTTTCTGGTAATGATCATAATGAAGACTCTTGTATTGATAATGAGAATGCTGTTAAGGAAAAATTAGGGTCGTCGCGAAAGGTTATAGTGTTATGCAATGACCTAAGCTTTGCGGCAGAATCAACTCCTGTGATATGTGTAGTAGATCTACAAGTACTAAATTATCTTTGTGAGCAAGAGAGATATGTATATCTTCCTAAGCCTTGGGAGATGTTTACCTATGTGACAAAGCCGATTCTTCATCAATTGCGTAGTCTTGATTCTGAGGATCTGCAACTGTCTTGTAATTGCTTATATTCTACTTGCTGTCCTGAAACGTGTGATCACGTATACCTTTTTGATGAAGAAAAGGACATATTTGGGAAACCAATGGCCGGAAGGTTCGCATACGATGTAAATGGTCGAATCATATTGGAGGAAGGTAGTTTTGTCTTCGAGTGTAACGATAAGTGCGGATGCAATAAAACCTGTCCAAACAGAATATTGCAGAACGGAGTTCGTGTTAAATTGGAGGGATTCGGAGTAAGGGCTGGCGAAGCTATTTTGCGTGGCACGTTTGTGTGTGAGTACATTGGTGAAGTTTTAGAGCAGCAGGAGGCACACAACAGACGCGGAAGGTTTACATTTCTTCCAAGACGTAATCTCTTCTTTTGTATGCTTGATGTTTCTTCCTTTTTACTGACTTGGCCTGTTTTAATACCAAATATAGCAAAGAAAATTGCACTGTTCACCCAATCTTGTGATTACAGAGTTATTGTAGAGGGCACGGATTGTAAGCATACACATATCGGTCTTTACGCAAGTCGAGATATTGCTTTGCATGAAGAATTGACATATAATTATGACTATGAGCCTGTGCTCGTAGAAGGATATCCTTGTCTTTGTGGATCTTTGAAATGCTGA

Protein sequence

>Msa1255550

MAMLHNEEHICVVNREYDISKMDDELSDSSVVMKESDIENQRDSLSLQESTEMISYSSGTVSRPVDEMAIQIFVEPGTKDRQCRAYVKAREGSTTGSGISCKYRSRPGFSFCKRHWHKAETGQTSNSNRRTLKRKAEENCGGSQNLICMDLVLAHPESPLEINPVLVINDVDPFFAKNISGEMLKLSGNDHNEDSCIDNENAVKEKLGSSRKVIVLCNDLSFAAESTPVICVVDLQVLNYLCEQERYVYLPKPWEMFTYVTKPILHQLRSLDSEDLQLSCNCLYSTCCPETCDHVYLFDEEKDIFGKPMAGRFAYDVNGRIILEEGSFVFECNDKCGCNKTCPNRILQNGVRVKLEGFGVRAGEAILRGTFVCEYIGEVLEQQEAHNRRGRFTFLPRRNLFFCMLDVSSFLLTWPVLIPNIAKKIALFTQSCDYRVIVEGTDCKHTHIGLYASRDIALHEELTYNYDYEPVLVEGYPCLCGSLKC*