Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1255750 | XP_003629540.2 | 96.717 | 396 | 13 | 0 | 1 | 396 | 599 | 994 | 0.0 | 772 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1255750 | sp|Q9SH30|HMA5_ARATH | 76.768 | 396 | 91 | 1 | 1 | 396 | 599 | 993 | 0.0 | 633 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0707330 | Msa1255750 | 0.805996 | 1.018983e-49 | -8.615850e-47 |
Msa1255750 | Msa1408400 | 0.837825 | 4.135110e-57 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1255750 | MtrunA17_Chr5g0397621 | 79.545 | 396 | 79 | 2 | 1 | 396 | 506 | 899 | 0.0 | 647 |
Msa1255750 | MtrunA17_Chr8g0374331 | 97.581 | 248 | 6 | 0 | 149 | 396 | 1 | 248 | 4.61e-174 | 485 |
Msa1255750 | MtrunA17_Chr8g0374391 | 97.510 | 241 | 6 | 0 | 156 | 396 | 1 | 241 | 9.73e-169 | 471 |
Msa1255750 | MtrunA17_Chr8g0339181 | 63.472 | 386 | 134 | 2 | 1 | 382 | 569 | 951 | 4.44e-153 | 456 |
Msa1255750 | MtrunA17_Chr4g0052521 | 56.328 | 403 | 162 | 3 | 2 | 390 | 587 | 989 | 2.69e-141 | 427 |
Msa1255750 | MtrunA17_Chr2g0297051 | 56.923 | 390 | 159 | 1 | 2 | 382 | 624 | 1013 | 6.12e-140 | 424 |
Msa1255750 | MtrunA17_Chr4g0050431 | 41.237 | 388 | 202 | 5 | 6 | 377 | 530 | 907 | 2.95e-81 | 267 |
Msa1255750 | MtrunA17_Chr3g0136331 | 37.817 | 394 | 222 | 6 | 6 | 383 | 500 | 886 | 4.33e-72 | 242 |
Msa1255750 | MtrunA17_Chr8g0374321 | 95.604 | 91 | 4 | 0 | 1 | 91 | 599 | 689 | 2.38e-50 | 180 |
Msa1255750 | MtrunA17_Chr4g0071991 | 34.301 | 379 | 218 | 11 | 8 | 376 | 340 | 697 | 3.49e-49 | 178 |
Msa1255750 | MtrunA17_Chr2g0297871 | 30.127 | 395 | 229 | 12 | 4 | 381 | 183 | 547 | 6.12e-47 | 170 |
Msa1255750 | MtrunA17_Chr4g0053441 | 30.000 | 380 | 215 | 13 | 12 | 357 | 407 | 769 | 1.24e-29 | 121 |
Msa1255750 | MtrunA17_Chr5g0401211 | 33.898 | 177 | 88 | 3 | 191 | 338 | 649 | 825 | 5.72e-22 | 98.6 |
Msa1255750 | MtrunA17_Chr1g0147981 | 25.377 | 398 | 223 | 8 | 11 | 346 | 292 | 677 | 3.11e-21 | 96.3 |
Msa1255750 | MtrunA17_Chr3g0134771 | 32.955 | 176 | 90 | 3 | 191 | 338 | 652 | 827 | 3.88e-21 | 95.9 |
Msa1255750 | MtrunA17_Chr2g0298031 | 26.551 | 403 | 213 | 9 | 11 | 346 | 280 | 666 | 5.02e-21 | 95.5 |
Msa1255750 | MtrunA17_Chr4g0054021 | 32.768 | 177 | 90 | 3 | 191 | 338 | 572 | 748 | 8.85e-21 | 94.7 |
Msa1255750 | MtrunA17_Chr7g0276551 | 24.697 | 413 | 234 | 12 | 11 | 357 | 41 | 442 | 4.70e-20 | 92.4 |
Msa1255750 | MtrunA17_Chr8g0365021 | 25.126 | 398 | 224 | 8 | 11 | 346 | 345 | 730 | 5.78e-20 | 92.4 |
Msa1255750 | MtrunA17_Chr8g0335291 | 25.980 | 408 | 235 | 11 | 11 | 357 | 283 | 684 | 2.73e-19 | 90.1 |
Msa1255750 | MtrunA17_Chr4g0072131 | 25.229 | 436 | 246 | 10 | 11 | 374 | 278 | 705 | 3.00e-19 | 90.1 |
Msa1255750 | MtrunA17_Chr4g0020551 | 32.768 | 177 | 91 | 3 | 190 | 338 | 584 | 760 | 3.71e-19 | 89.7 |
Msa1255750 | MtrunA17_Chr8g0382071 | 31.667 | 180 | 94 | 3 | 190 | 340 | 648 | 827 | 7.89e-18 | 85.9 |
Msa1255750 | MtrunA17_Chr3g0138931 | 30.851 | 188 | 93 | 2 | 189 | 346 | 480 | 660 | 8.36e-18 | 85.9 |
Msa1255750 | MtrunA17_Chr8g0340261 | 29.508 | 183 | 97 | 3 | 190 | 340 | 193 | 375 | 8.57e-18 | 85.1 |
Msa1255750 | MtrunA17_Chr4g0002331 | 27.358 | 212 | 116 | 4 | 164 | 340 | 684 | 892 | 9.65e-18 | 85.5 |
Msa1255750 | MtrunA17_Chr4g0065481 | 29.787 | 188 | 95 | 2 | 189 | 346 | 481 | 661 | 1.46e-17 | 85.1 |
Msa1255750 | MtrunA17_Chr7g0263361 | 27.004 | 237 | 117 | 4 | 136 | 335 | 586 | 803 | 1.55e-17 | 85.1 |
Msa1255750 | MtrunA17_Chr2g0298871 | 27.717 | 184 | 100 | 2 | 190 | 340 | 696 | 879 | 1.72e-17 | 84.7 |
Msa1255750 | MtrunA17_Chr6g0456201 | 29.032 | 186 | 100 | 3 | 187 | 340 | 638 | 823 | 1.90e-17 | 84.7 |
Msa1255750 | MtrunA17_Chr6g0452721 | 29.353 | 201 | 107 | 3 | 189 | 357 | 482 | 679 | 1.92e-17 | 84.7 |
Msa1255750 | MtrunA17_Chr1g0148031 | 30.319 | 188 | 94 | 2 | 189 | 346 | 480 | 660 | 1.99e-17 | 84.7 |
Msa1255750 | MtrunA17_Chr1g0173111 | 31.461 | 178 | 93 | 3 | 190 | 338 | 645 | 822 | 2.37e-17 | 84.3 |
Msa1255750 | MtrunA17_Chr4g0059961 | 28.358 | 201 | 109 | 3 | 189 | 357 | 484 | 681 | 5.34e-17 | 83.2 |
Msa1255750 | MtrunA17_Chr7g0260401 | 26.190 | 210 | 120 | 3 | 166 | 340 | 647 | 856 | 8.31e-17 | 82.8 |
Msa1255750 | MtrunA17_Chr2g0333721 | 29.947 | 187 | 93 | 2 | 190 | 338 | 479 | 665 | 1.23e-16 | 82.0 |
Msa1255750 | MtrunA17_Chr2g0304941 | 29.545 | 176 | 94 | 1 | 190 | 335 | 482 | 657 | 3.82e-16 | 80.5 |
Msa1255750 | MtrunA17_Chr8g0381711 | 28.877 | 187 | 106 | 3 | 161 | 320 | 486 | 672 | 2.36e-15 | 78.2 |
Msa1255750 | MtrunA17_Chr3g0134951 | 27.411 | 197 | 109 | 3 | 187 | 349 | 580 | 776 | 4.56e-15 | 77.4 |
Msa1255750 | MtrunA17_Chr8g0346461 | 28.994 | 169 | 86 | 2 | 190 | 324 | 619 | 787 | 4.60e-15 | 77.4 |
Msa1255750 | MtrunA17_Chr8g0355421 | 30.488 | 164 | 85 | 3 | 190 | 324 | 639 | 802 | 4.73e-14 | 74.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1255750 | AT1G63440.1 | 76.768 | 396 | 91 | 1 | 1 | 396 | 599 | 993 | 0.0 | 633 |
Msa1255750 | AT5G44790.1 | 56.378 | 392 | 158 | 1 | 4 | 382 | 599 | 990 | 5.91e-141 | 426 |
Msa1255750 | AT5G21930.2 | 36.139 | 404 | 234 | 7 | 2 | 388 | 487 | 883 | 4.07e-77 | 256 |
Msa1255750 | AT5G21930.1 | 36.139 | 404 | 234 | 7 | 2 | 388 | 487 | 883 | 4.07e-77 | 256 |
Msa1255750 | AT5G21930.3 | 36.139 | 404 | 234 | 7 | 2 | 388 | 464 | 860 | 5.16e-77 | 255 |
Msa1255750 | AT4G33520.2 | 39.896 | 386 | 208 | 6 | 6 | 377 | 541 | 916 | 2.42e-69 | 235 |
Msa1255750 | AT4G33520.3 | 39.896 | 386 | 208 | 6 | 6 | 377 | 541 | 916 | 3.05e-69 | 235 |
Msa1255750 | AT5G21930.4 | 33.846 | 325 | 191 | 7 | 2 | 309 | 487 | 804 | 1.30e-51 | 185 |
Msa1255750 | AT4G30110.1 | 31.854 | 383 | 236 | 9 | 8 | 383 | 336 | 700 | 3.70e-48 | 176 |
Msa1255750 | AT4G30110.2 | 31.854 | 383 | 236 | 9 | 8 | 383 | 336 | 700 | 3.70e-48 | 176 |
Msa1255750 | AT2G19110.2 | 30.370 | 405 | 248 | 12 | 4 | 396 | 346 | 728 | 1.25e-45 | 169 |
Msa1255750 | AT2G19110.3 | 30.370 | 405 | 248 | 12 | 4 | 396 | 346 | 728 | 1.25e-45 | 169 |
Msa1255750 | AT2G19110.1 | 30.370 | 405 | 248 | 12 | 4 | 396 | 346 | 728 | 1.25e-45 | 169 |
Msa1255750 | AT4G37270.1 | 28.836 | 378 | 221 | 13 | 12 | 357 | 403 | 764 | 1.16e-24 | 106 |
Msa1255750 | AT2G41560.2 | 24.882 | 422 | 224 | 10 | 12 | 340 | 298 | 719 | 8.21e-21 | 95.1 |
Msa1255750 | AT2G41560.3 | 24.882 | 422 | 224 | 10 | 12 | 340 | 298 | 719 | 8.21e-21 | 95.1 |
Msa1255750 | AT2G41560.4 | 24.882 | 422 | 224 | 10 | 12 | 340 | 298 | 719 | 8.21e-21 | 95.1 |
Msa1255750 | AT4G37640.1 | 32.768 | 177 | 90 | 3 | 191 | 338 | 649 | 825 | 1.41e-20 | 94.7 |
Msa1255750 | AT3G60330.4 | 26.034 | 411 | 233 | 13 | 9 | 357 | 274 | 675 | 2.89e-20 | 93.6 |
Msa1255750 | AT3G60330.3 | 26.034 | 411 | 233 | 13 | 9 | 357 | 274 | 675 | 2.89e-20 | 93.6 |
Msa1255750 | AT3G60330.2 | 26.034 | 411 | 233 | 13 | 9 | 357 | 274 | 675 | 3.02e-20 | 93.6 |
Msa1255750 | AT3G60330.1 | 26.034 | 411 | 233 | 13 | 9 | 357 | 274 | 675 | 3.02e-20 | 93.6 |
Msa1255750 | AT1G27770.3 | 32.203 | 177 | 91 | 3 | 191 | 338 | 589 | 765 | 7.85e-20 | 92.4 |
Msa1255750 | AT2G41560.1 | 32.402 | 179 | 93 | 2 | 190 | 340 | 643 | 821 | 8.08e-20 | 92.4 |
Msa1255750 | AT1G27770.4 | 32.203 | 177 | 91 | 3 | 191 | 338 | 652 | 828 | 8.82e-20 | 92.0 |
Msa1255750 | AT1G27770.1 | 32.203 | 177 | 91 | 3 | 191 | 338 | 652 | 828 | 8.82e-20 | 92.0 |
Msa1255750 | AT2G22950.1 | 31.638 | 177 | 92 | 3 | 191 | 338 | 650 | 826 | 1.04e-19 | 92.0 |
Msa1255750 | AT3G57330.1 | 32.402 | 179 | 93 | 2 | 190 | 340 | 640 | 818 | 1.14e-19 | 92.0 |
Msa1255750 | AT3G57330.2 | 32.402 | 179 | 93 | 2 | 190 | 340 | 585 | 763 | 1.41e-19 | 91.7 |
Msa1255750 | AT1G17260.1 | 25.436 | 401 | 225 | 11 | 7 | 338 | 277 | 672 | 8.32e-19 | 89.4 |
Msa1255750 | AT4G30120.2 | 33.117 | 154 | 92 | 4 | 4 | 155 | 183 | 327 | 2.16e-18 | 86.7 |
Msa1255750 | AT4G30120.1 | 33.117 | 154 | 92 | 4 | 4 | 155 | 342 | 486 | 2.94e-18 | 87.0 |
Msa1255750 | AT4G29900.1 | 27.143 | 210 | 119 | 3 | 164 | 340 | 653 | 861 | 4.57e-18 | 87.0 |
Msa1255750 | AT4G29900.2 | 27.143 | 210 | 119 | 3 | 164 | 340 | 653 | 861 | 4.57e-18 | 87.0 |
Msa1255750 | AT5G57350.3 | 31.915 | 188 | 91 | 3 | 189 | 346 | 217 | 397 | 4.73e-18 | 86.7 |
Msa1255750 | AT4G30190.1 | 31.383 | 188 | 92 | 2 | 189 | 346 | 478 | 658 | 5.06e-18 | 86.7 |
Msa1255750 | AT5G57350.4 | 31.915 | 188 | 91 | 3 | 189 | 346 | 479 | 659 | 6.58e-18 | 86.3 |
Msa1255750 | AT5G57350.2 | 31.915 | 188 | 91 | 3 | 189 | 346 | 479 | 659 | 6.58e-18 | 86.3 |
Msa1255750 | AT5G57350.1 | 31.915 | 188 | 91 | 3 | 189 | 346 | 479 | 659 | 6.58e-18 | 86.3 |
Msa1255750 | AT3G21180.1 | 27.717 | 184 | 100 | 2 | 190 | 340 | 691 | 874 | 7.23e-18 | 86.3 |
Msa1255750 | AT2G18960.1 | 31.915 | 188 | 91 | 2 | 189 | 346 | 478 | 658 | 7.74e-18 | 86.3 |
Msa1255750 | AT2G18960.3 | 31.915 | 188 | 91 | 2 | 189 | 346 | 414 | 594 | 8.30e-18 | 86.3 |
Msa1255750 | AT2G18960.2 | 31.915 | 188 | 91 | 2 | 189 | 346 | 414 | 594 | 8.30e-18 | 86.3 |
Msa1255750 | AT5G57110.1 | 27.717 | 184 | 100 | 2 | 190 | 340 | 674 | 857 | 9.89e-18 | 85.9 |
Msa1255750 | AT5G57110.3 | 27.717 | 184 | 100 | 2 | 190 | 340 | 674 | 857 | 9.89e-18 | 85.9 |
Msa1255750 | AT5G57110.2 | 27.717 | 184 | 100 | 2 | 190 | 340 | 674 | 857 | 9.89e-18 | 85.9 |
Msa1255750 | AT1G07670.2 | 27.528 | 178 | 97 | 2 | 190 | 335 | 621 | 798 | 4.14e-17 | 84.0 |
Msa1255750 | AT1G07670.1 | 27.528 | 178 | 97 | 2 | 190 | 335 | 621 | 798 | 4.14e-17 | 84.0 |
Msa1255750 | AT2G07560.1 | 30.682 | 176 | 93 | 1 | 189 | 335 | 481 | 656 | 4.20e-17 | 84.0 |
Msa1255750 | AT1G07810.1 | 28.652 | 178 | 95 | 3 | 190 | 335 | 621 | 798 | 5.28e-17 | 83.6 |
Msa1255750 | AT3G47950.1 | 28.856 | 201 | 108 | 3 | 189 | 357 | 486 | 683 | 6.27e-17 | 83.6 |
Msa1255750 | AT3G47950.2 | 28.856 | 201 | 108 | 3 | 189 | 357 | 486 | 683 | 6.27e-17 | 83.6 |
Msa1255750 | AT3G42640.1 | 30.348 | 201 | 105 | 3 | 189 | 357 | 481 | 678 | 9.97e-17 | 82.8 |
Msa1255750 | AT5G62670.1 | 28.358 | 201 | 109 | 3 | 189 | 357 | 482 | 679 | 1.17e-16 | 82.8 |
Msa1255750 | AT2G24520.2 | 29.787 | 188 | 95 | 2 | 189 | 346 | 523 | 703 | 1.74e-16 | 82.0 |
Msa1255750 | AT2G24520.4 | 29.787 | 188 | 95 | 2 | 189 | 346 | 217 | 397 | 1.86e-16 | 81.6 |
Msa1255750 | AT2G24520.3 | 29.787 | 188 | 95 | 2 | 189 | 346 | 460 | 640 | 1.98e-16 | 82.0 |
Msa1255750 | AT2G24520.1 | 29.787 | 188 | 95 | 2 | 189 | 346 | 460 | 640 | 1.98e-16 | 82.0 |
Msa1255750 | AT1G10130.1 | 27.451 | 204 | 110 | 3 | 184 | 349 | 572 | 775 | 3.00e-16 | 81.3 |
Msa1255750 | AT3G22910.1 | 28.261 | 184 | 99 | 2 | 190 | 340 | 636 | 819 | 3.21e-16 | 81.3 |
Msa1255750 | AT1G80660.2 | 29.379 | 177 | 95 | 1 | 189 | 335 | 354 | 530 | 9.09e-16 | 79.7 |
Msa1255750 | AT3G63380.1 | 27.451 | 204 | 114 | 3 | 171 | 340 | 620 | 823 | 9.42e-16 | 79.7 |
Msa1255750 | AT1G80660.1 | 29.379 | 177 | 95 | 1 | 189 | 335 | 483 | 659 | 1.13e-15 | 79.7 |
Msa1255750 | AT1G80660.4 | 29.379 | 177 | 95 | 1 | 189 | 335 | 483 | 659 | 1.21e-15 | 79.3 |
Msa1255750 | AT1G80660.3 | 29.379 | 177 | 95 | 1 | 189 | 335 | 483 | 659 | 1.22e-15 | 79.3 |
Msa1255750 | AT4G00900.2 | 28.994 | 169 | 86 | 3 | 190 | 324 | 615 | 783 | 2.90e-14 | 75.1 |
Msa1255750 | AT4G00900.1 | 28.994 | 169 | 86 | 3 | 190 | 324 | 615 | 783 | 2.90e-14 | 75.1 |
Msa1255750 | AT4G30190.2 | 41.414 | 99 | 51 | 1 | 248 | 346 | 600 | 691 | 6.08e-13 | 71.2 |
Find 79 sgRNAs with CRISPR-Local
Find 212 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTAAATTACATTTGGGCTTT+AGG | 0.167127 | 8_2:+54821554 | Msa1255750:CDS |
CATGGCTCAAACAGGAATTT+TGG | 0.195063 | 8_2:+54819617 | Msa1255750:CDS |
TAATGGTGACAGGTGATAAT+TGG | 0.244399 | 8_2:+54819745 | Msa1255750:CDS |
TATACTTGGTGGCAGAATTC+TGG | 0.290037 | 8_2:+54821341 | Msa1255750:intron |
TGTTCAAAACAAGGAAATAA+TGG | 0.301600 | 8_2:+54819515 | Msa1255750:CDS |
GACACAAATTCCTTTGCTTC+TGG | 0.302263 | 8_2:-54819465 | None:intergenic |
TACTAAAGTAAAGGAATTAC+AGG | 0.304850 | 8_2:+54819842 | Msa1255750:CDS |
ATAGCTTGTCCTTGTGCTCT+TGG | 0.308206 | 8_2:+54818948 | Msa1255750:CDS |
AGGTTACCACCTTGGATTGC+TGG | 0.314307 | 8_2:+54821635 | Msa1255750:CDS |
TCTTATGAAGAGTAACTTAG+AGG | 0.322084 | 8_2:+54821481 | Msa1255750:CDS |
AAGGAATTTGTGTCTATTGC+TGG | 0.348011 | 8_2:+54819474 | Msa1255750:CDS |
TGGAGAAATTGTCGGAGTTT+TGG | 0.354180 | 8_2:+54819650 | Msa1255750:CDS |
TCAACAATGGACTTTGCTAT+TGG | 0.359587 | 8_2:-54819396 | None:intergenic |
AAGACAGGAACTCTCACTAT+TGG | 0.365137 | 8_2:+54819184 | Msa1255750:CDS |
GTATACGTCTAAATTACATT+TGG | 0.368053 | 8_2:+54821546 | Msa1255750:CDS |
TTTGAGCTTGCACTTCAGTT+TGG | 0.371632 | 8_2:+54818909 | Msa1255750:CDS |
TATACGTCTAAATTACATTT+GGG | 0.388043 | 8_2:+54821547 | Msa1255750:CDS |
AATGGTGACAGGTGATAATT+GGG | 0.389397 | 8_2:+54819746 | Msa1255750:CDS |
AGTTGGAGATGAATGGTATT+CGG | 0.392073 | 8_2:+54821741 | Msa1255750:CDS |
ACTTTAGTAGCTTTAGTCTC+AGG | 0.403729 | 8_2:-54819828 | None:intergenic |
AAAAGTATGCCAGCAGCAAT+AGG | 0.418214 | 8_2:-54821596 | None:intergenic |
TCATAACATAGCTATTTCAT+TGG | 0.421787 | 8_2:+54819563 | Msa1255750:CDS |
TCCAACTTGTTAAGCTTGGT+TGG | 0.430082 | 8_2:-54821725 | None:intergenic |
CTAGCCATTCCTATTGCTGC+TGG | 0.431313 | 8_2:+54821587 | Msa1255750:CDS |
GGTAACCTAAATCTAGTAGA+AGG | 0.435103 | 8_2:-54821620 | None:intergenic |
CATCTCCAACTTGTTAAGCT+TGG | 0.437629 | 8_2:-54821729 | None:intergenic |
TGCATTGTGTTTGATAAGAC+AGG | 0.453034 | 8_2:+54819169 | Msa1255750:CDS |
CATGAAAATAAAGAGCATAA+TGG | 0.455425 | 8_2:+54819728 | Msa1255750:CDS |
AGACAGGAACTCTCACTATT+GGG | 0.460982 | 8_2:+54819185 | Msa1255750:CDS |
GCTGAAAACATGGCTCAAAC+AGG | 0.465875 | 8_2:+54819609 | Msa1255750:CDS |
TGTGTGCACTTTCTAATGCT+TGG | 0.473648 | 8_2:-54819043 | None:intergenic |
TTGGATTGCTGGAGCTGCAA+TGG | 0.487123 | 8_2:+54821646 | Msa1255750:CDS |
GCACTAGTAGCAGCTGATGT+TGG | 0.489521 | 8_2:+54821407 | Msa1255750:CDS |
GTTGGAATGGCAATTGGTGC+TGG | 0.502064 | 8_2:+54821425 | Msa1255750:CDS |
CTTAACAAGTTGGAGATGAA+TGG | 0.506035 | 8_2:+54821734 | Msa1255750:CDS |
GCTGATGTTGGAATGGCAAT+TGG | 0.508224 | 8_2:+54821419 | Msa1255750:CDS |
AGCCACTCCTACAGCGGTCA+TGG | 0.513949 | 8_2:+54818974 | Msa1255750:CDS |
CTAGATTTAGGTTACCACCT+TGG | 0.517511 | 8_2:+54821627 | Msa1255750:CDS |
GTCATGGTTGGTACCGGAGT+TGG | 0.522797 | 8_2:+54818990 | Msa1255750:CDS |
GGATACACTGTAGGAATGGT+AGG | 0.525626 | 8_2:+54821362 | Msa1255750:CDS |
GACTAAAGCTACTAAAGTAA+AGG | 0.529942 | 8_2:+54819833 | Msa1255750:CDS |
ACAGCGGTCATGGTTGGTAC+CGG | 0.534259 | 8_2:+54818984 | Msa1255750:CDS |
CAAAACAAGGAAATAATGGT+TGG | 0.535760 | 8_2:+54819519 | Msa1255750:CDS |
ACATCAGCTGCTACTAGTGC+TGG | 0.539899 | 8_2:-54821404 | None:intergenic |
TTCATCATGGCCAGAAGCAA+AGG | 0.544219 | 8_2:+54819455 | Msa1255750:CDS |
ATAAAGAGCATAATGGTGAC+AGG | 0.549153 | 8_2:+54819735 | Msa1255750:CDS |
AATTCTATAGCTAGACAAGC+TGG | 0.552536 | 8_2:+54819777 | Msa1255750:CDS |
ACCAACCAAGCTTAACAAGT+TGG | 0.553400 | 8_2:+54821724 | Msa1255750:CDS |
TTCTGGATACACTGTAGGAA+TGG | 0.557596 | 8_2:+54821358 | Msa1255750:CDS |
CAGAATTCTGGATACACTGT+AGG | 0.561507 | 8_2:+54821353 | Msa1255750:intron |
ATGAACAAAATCATTCATCA+TGG | 0.562767 | 8_2:+54819442 | Msa1255750:CDS |
TCAGTTTGGAATTTCAGTCA+TGG | 0.566870 | 8_2:+54818923 | Msa1255750:CDS |
AGAAGAGCAAACGACACTGA+TGG | 0.567557 | 8_2:-54821678 | None:intergenic |
ACCTTGAGTTGCACCAACTC+CGG | 0.571323 | 8_2:-54819003 | None:intergenic |
TGACCGCTGTAGGAGTGGCT+AGG | 0.576720 | 8_2:-54818971 | None:intergenic |
ACCGGAGTTGGTGCAACTCA+AGG | 0.578148 | 8_2:+54819002 | Msa1255750:CDS |
AGCATTAGAAAGTGCACACA+AGG | 0.580174 | 8_2:+54819046 | Msa1255750:CDS |
ATTAGCAGAAGCTGAAAACA+TGG | 0.580990 | 8_2:+54819599 | Msa1255750:CDS |
AGTAGCAGCTGATGTTGGAA+TGG | 0.584059 | 8_2:+54821412 | Msa1255750:CDS |
GTGGCTAGGCCAAGAGCACA+AGG | 0.584136 | 8_2:-54818957 | None:intergenic |
AACCATGACCGCTGTAGGAG+TGG | 0.599538 | 8_2:-54818976 | None:intergenic |
TTTGTGTCTATTGCTGGACA+TGG | 0.601968 | 8_2:+54819480 | Msa1255750:CDS |
TGGCCTAGCCACTCCTACAG+CGG | 0.605944 | 8_2:+54818968 | Msa1255750:CDS |
TGAACTTGTTGCTGCAGCAG+AGG | 0.608008 | 8_2:+54819264 | Msa1255750:CDS |
ACTGTAGGAATGGTAGGAGA+TGG | 0.612600 | 8_2:+54821368 | Msa1255750:CDS |
CAAGGTGTGTTGATCAAAGG+TGG | 0.614870 | 8_2:+54819020 | Msa1255750:CDS |
ACTCCTACAGCGGTCATGGT+TGG | 0.617392 | 8_2:+54818978 | Msa1255750:CDS |
ATTGCAGCTCCAGCAATCCA+AGG | 0.621783 | 8_2:-54821644 | None:intergenic |
TATTGAAACTGTCATGGCTG+AGG | 0.621886 | 8_2:+54819800 | Msa1255750:CDS |
TCATTGGATGGAGAAATTGT+CGG | 0.622139 | 8_2:+54819642 | Msa1255750:CDS |
GTACCAACCATGACCGCTGT+AGG | 0.635820 | 8_2:-54818981 | None:intergenic |
GAAGGCAATTGTTCAAAACA+AGG | 0.642903 | 8_2:+54819506 | Msa1255750:CDS |
TATGCCAGCAGCAATAGGAA+TGG | 0.645015 | 8_2:-54821591 | None:intergenic |
ACTCAAGGTGTGTTGATCAA+AGG | 0.657349 | 8_2:+54819017 | Msa1255750:CDS |
AGCTGGTATTGAAACTGTCA+TGG | 0.661486 | 8_2:+54819794 | Msa1255750:CDS |
TATTGCTGGACATGGAGTGA+AGG | 0.690560 | 8_2:+54819488 | Msa1255750:CDS |
TCTCACTATTGGGAAGACAG+TGG | 0.732396 | 8_2:+54819195 | Msa1255750:CDS |
GCAGCTCCAGCAATCCAAGG+TGG | 0.740644 | 8_2:-54821641 | None:intergenic |
ATGGTGACAGGTGATAATTG+GGG | 0.767964 | 8_2:+54819747 | Msa1255750:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TAAAAAAATTAAATTTTATA+AGG | + | chr8_2:54821257-54821276 | Msa1255750:intron | 0.0% |
!! | AATCTAAACAAAATAATTAG+AGG | + | chr8_2:54820177-54820196 | Msa1255750:intron | 15.0% |
!! | ATCTAAACAAAATAATTAGA+GGG | + | chr8_2:54820178-54820197 | Msa1255750:intron | 15.0% |
!! | AAATATATTAACACCAAAAA+CGG | + | chr8_2:54820455-54820474 | Msa1255750:intron | 15.0% |
!! | GATTGTCTAAATATTATATA+GGG | - | chr8_2:54821300-54821319 | None:intergenic | 15.0% |
!! | AGATTGTCTAAATATTATAT+AGG | - | chr8_2:54821301-54821320 | None:intergenic | 15.0% |
!!! | TATTTCAAGTACTACATTAA+TGG | + | chr8_2:54819301-54819320 | Msa1255750:intron | 20.0% |
!! | ATTGTTATATCTACATGATT+AGG | + | chr8_2:54819359-54819378 | Msa1255750:intron | 20.0% |
!! | TACAGGTATATACAAAATTA+TGG | + | chr8_2:54819859-54819878 | Msa1255750:intron | 20.0% |
!!! | ATAGGACATTTATTCAATTT+TGG | + | chr8_2:54819951-54819970 | Msa1255750:intron | 20.0% |
!!! | TCTCAACAAAAATTTTTACA+AGG | - | chr8_2:54820024-54820043 | None:intergenic | 20.0% |
!! | CAACATTTATTGTATTTGTT+GGG | - | chr8_2:54820053-54820072 | None:intergenic | 20.0% |
!! | ACAACATTTATTGTATTTGT+TGG | - | chr8_2:54820054-54820073 | None:intergenic | 20.0% |
!! | TTGCAATTTATTAATTATGC+AGG | - | chr8_2:54820784-54820803 | None:intergenic | 20.0% |
!! | AATTAATAAATTGCAAACCA+TGG | + | chr8_2:54820788-54820807 | Msa1255750:intron | 20.0% |
!!! | TATAGGGTTGAATATATTTT+TGG | - | chr8_2:54821284-54821303 | None:intergenic | 20.0% |
!! | AGTTATTTGACATATATACT+TGG | + | chr8_2:54821327-54821346 | Msa1255750:intron | 20.0% |
!! | TATACGTCTAAATTACATTT+GGG | + | chr8_2:54821547-54821566 | Msa1255750:CDS | 20.0% |
!!! | TTTGTTACTTACAATTTTGC+AGG | + | chr8_2:54819141-54819160 | Msa1255750:intron | 25.0% |
!! | TTCATCTTGTGTGATATTTT+TGG | - | chr8_2:54819427-54819446 | None:intergenic | 25.0% |
! | ATGAACAAAATCATTCATCA+TGG | + | chr8_2:54819442-54819461 | Msa1255750:CDS | 25.0% |
! | TGTTCAAAACAAGGAAATAA+TGG | + | chr8_2:54819515-54819534 | Msa1255750:CDS | 25.0% |
!! | TCATAACATAGCTATTTCAT+TGG | + | chr8_2:54819563-54819582 | Msa1255750:CDS | 25.0% |
!!! | CATTATGCTCTTTATTTTCA+TGG | - | chr8_2:54819730-54819749 | None:intergenic | 25.0% |
!! | CATGAAAATAAAGAGCATAA+TGG | + | chr8_2:54819728-54819747 | Msa1255750:CDS | 25.0% |
! | TACTAAAGTAAAGGAATTAC+AGG | + | chr8_2:54819842-54819861 | Msa1255750:CDS | 25.0% |
!! | TTTAAGACTTTGTTCACTAT+AGG | + | chr8_2:54819933-54819952 | Msa1255750:intron | 25.0% |
! | ATCACTTAAGTTCAATTACT+TGG | - | chr8_2:54820209-54820228 | None:intergenic | 25.0% |
! | AATTGAATTCAGATTCTTAG+AGG | - | chr8_2:54820242-54820261 | None:intergenic | 25.0% |
! | ACACAAAAGAAAATATTTCG+AGG | + | chr8_2:54820324-54820343 | Msa1255750:intron | 25.0% |
! | CACAAAAGAAAATATTTCGA+GGG | + | chr8_2:54820325-54820344 | Msa1255750:intron | 25.0% |
!!! | GTAACGTTGTTTTTAGTTTT+GGG | - | chr8_2:54820600-54820619 | None:intergenic | 25.0% |
!!! | AGTAACGTTGTTTTTAGTTT+TGG | - | chr8_2:54820601-54820620 | None:intergenic | 25.0% |
! | AAGTAAAATCATATTCCTTG+TGG | - | chr8_2:54820636-54820655 | None:intergenic | 25.0% |
! | TTTACTTTGTCTAACAAATG+CGG | + | chr8_2:54820649-54820668 | Msa1255750:intron | 25.0% |
!!! | GTTCTTTTTTCCATCTTATT+TGG | - | chr8_2:54820744-54820763 | None:intergenic | 25.0% |
! | CAATTTATTAATTATGCAGG+TGG | - | chr8_2:54820781-54820800 | None:intergenic | 25.0% |
! | GTTACCTACAAAACAAAATT+TGG | - | chr8_2:54820980-54820999 | None:intergenic | 25.0% |
!!! | AATTTTGTTTTGTAGGTAAC+CGG | + | chr8_2:54820980-54820999 | Msa1255750:intron | 25.0% |
!! | ATCAAAATATGGAGTTGATT+TGG | - | chr8_2:54821059-54821078 | None:intergenic | 25.0% |
!!! | TCCATATTTTGATGTAACAT+GGG | + | chr8_2:54821066-54821085 | Msa1255750:intron | 25.0% |
! | TATTTGACATATATACTTGG+TGG | + | chr8_2:54821330-54821349 | Msa1255750:intron | 25.0% |
! | GTATACGTCTAAATTACATT+TGG | + | chr8_2:54821546-54821565 | Msa1255750:CDS | 25.0% |
!! | TTTTTCCTTCTACTAGATTT+AGG | + | chr8_2:54821615-54821634 | Msa1255750:CDS | 25.0% |
! | TGACTTTTCTACAGTTGAAA+TGG | - | chr8_2:54819121-54819140 | None:intergenic | 30.0% |
!!! | ATTTTTGGCATGATCAACAA+TGG | - | chr8_2:54819412-54819431 | None:intergenic | 30.0% |
CAAAACAAGGAAATAATGGT+TGG | + | chr8_2:54819519-54819538 | Msa1255750:CDS | 30.0% | |
!! | AACAGGAATTTTGGTATCAT+TGG | + | chr8_2:54819626-54819645 | Msa1255750:CDS | 30.0% |
! | GAAATAACTTCTTTTGCATC+AGG | - | chr8_2:54819696-54819715 | None:intergenic | 30.0% |
GACTAAAGCTACTAAAGTAA+AGG | + | chr8_2:54819833-54819852 | Msa1255750:CDS | 30.0% | |
AAGCAATAATTTGGGAATTG+GGG | - | chr8_2:54819886-54819905 | None:intergenic | 30.0% | |
GAAGCAATAATTTGGGAATT+GGG | - | chr8_2:54819887-54819906 | None:intergenic | 30.0% | |
TGAAGCAATAATTTGGGAAT+TGG | - | chr8_2:54819888-54819907 | None:intergenic | 30.0% | |
AAGGAGTGAAGCAATAATTT+GGG | - | chr8_2:54819894-54819913 | None:intergenic | 30.0% | |
AAAGGAGTGAAGCAATAATT+TGG | - | chr8_2:54819895-54819914 | None:intergenic | 30.0% | |
AATTATTGCTTCACTCCTTT+AGG | + | chr8_2:54819895-54819914 | Msa1255750:intron | 30.0% | |
ATTATTGCTTCACTCCTTTA+GGG | + | chr8_2:54819896-54819915 | Msa1255750:intron | 30.0% | |
TCAATGCAGTTATAGTGTAT+TGG | + | chr8_2:54819991-54820010 | Msa1255750:intron | 30.0% | |
AGTCTTTAACGTCAACTTAT+TGG | + | chr8_2:54820078-54820097 | Msa1255750:intron | 30.0% | |
CAATCCTTACAAATTAAACG+CGG | - | chr8_2:54820157-54820176 | None:intergenic | 30.0% | |
! | CAATTTTTCGTCAGACTTTA+AGG | + | chr8_2:54820273-54820292 | Msa1255750:intron | 30.0% |
!!! | TTAGTTTTGGGATCCATAAT+TGG | - | chr8_2:54820588-54820607 | None:intergenic | 30.0% |
TAAAATCATATTCCTTGTGG+TGG | - | chr8_2:54820633-54820652 | None:intergenic | 30.0% | |
TTCTATGTGTTTGGATATTG+TGG | - | chr8_2:54820720-54820739 | None:intergenic | 30.0% | |
! | TTATTTGGCTTCTATGTGTT+TGG | - | chr8_2:54820729-54820748 | None:intergenic | 30.0% |
!!! | CTTGCCAAATTTTGTTTTGT+AGG | + | chr8_2:54820973-54820992 | Msa1255750:intron | 30.0% |
!!! | CTCCATATTTTGATGTAACA+TGG | + | chr8_2:54821065-54821084 | Msa1255750:intron | 30.0% |
ACCCATGTTACATCAAAATA+TGG | - | chr8_2:54821070-54821089 | None:intergenic | 30.0% | |
! | ATTACTTACAGTTACTTTGC+AGG | - | chr8_2:54821184-54821203 | None:intergenic | 30.0% |
TCTTATGAAGAGTAACTTAG+AGG | + | chr8_2:54821481-54821500 | Msa1255750:CDS | 30.0% | |
CTAAATTACATTTGGGCTTT+AGG | + | chr8_2:54821554-54821573 | Msa1255750:CDS | 30.0% | |
! | TCAGTTTGGAATTTCAGTCA+TGG | + | chr8_2:54818923-54818942 | Msa1255750:CDS | 35.0% |
ACAAGGTGAGTGAATAACAT+TGG | + | chr8_2:54819063-54819082 | Msa1255750:intron | 35.0% | |
TGCATTGTGTTTGATAAGAC+AGG | + | chr8_2:54819169-54819188 | Msa1255750:CDS | 35.0% | |
! | TCAACAATGGACTTTGCTAT+TGG | - | chr8_2:54819399-54819418 | None:intergenic | 35.0% |
AAGGAATTTGTGTCTATTGC+TGG | + | chr8_2:54819474-54819493 | Msa1255750:CDS | 35.0% | |
GAAGGCAATTGTTCAAAACA+AGG | + | chr8_2:54819506-54819525 | Msa1255750:CDS | 35.0% | |
ATTAGCAGAAGCTGAAAACA+TGG | + | chr8_2:54819599-54819618 | Msa1255750:CDS | 35.0% | |
!! | GGAATTTTGGTATCATTGGA+TGG | + | chr8_2:54819630-54819649 | Msa1255750:CDS | 35.0% |
TCATTGGATGGAGAAATTGT+CGG | + | chr8_2:54819642-54819661 | Msa1255750:CDS | 35.0% | |
! | TCTTTTGCATCAGGTTTCAA+TGG | - | chr8_2:54819687-54819706 | None:intergenic | 35.0% |
! | ATAAAGAGCATAATGGTGAC+AGG | + | chr8_2:54819735-54819754 | Msa1255750:CDS | 35.0% |
TAATGGTGACAGGTGATAAT+TGG | + | chr8_2:54819745-54819764 | Msa1255750:CDS | 35.0% | |
AATGGTGACAGGTGATAATT+GGG | + | chr8_2:54819746-54819765 | Msa1255750:CDS | 35.0% | |
AATTCTATAGCTAGACAAGC+TGG | + | chr8_2:54819777-54819796 | Msa1255750:CDS | 35.0% | |
!! | ACTTTAGTAGCTTTAGTCTC+AGG | - | chr8_2:54819831-54819850 | None:intergenic | 35.0% |
!!! | GTGTTAACACTCCGTTTTTT+AGG | - | chr8_2:54820308-54820327 | None:intergenic | 35.0% |
! | CTTGCAATGATTGTGTGTTT+TGG | - | chr8_2:54820358-54820377 | None:intergenic | 35.0% |
AAGGTGTGCTGTAACAATAA+CGG | + | chr8_2:54820492-54820511 | Msa1255750:intron | 35.0% | |
TTTGGATATTGTGGAATGAG+CGG | - | chr8_2:54820711-54820730 | None:intergenic | 35.0% | |
CACATAGAAGCCAAATAAGA+TGG | + | chr8_2:54820731-54820750 | Msa1255750:intron | 35.0% | |
AAGCCAGAAAAAGATGATTC+AGG | + | chr8_2:54820890-54820909 | Msa1255750:intron | 35.0% | |
AACAAAATTTGGCAAGTCGT+GGG | - | chr8_2:54820969-54820988 | None:intergenic | 35.0% | |
AAACAAAATTTGGCAAGTCG+TGG | - | chr8_2:54820970-54820989 | None:intergenic | 35.0% | |
!! | TGAAAGTGTCTATACTTGCT+TGG | - | chr8_2:54821020-54821039 | None:intergenic | 35.0% |
GCAAGTATAGACACTTTCAA+AGG | + | chr8_2:54821021-54821040 | Msa1255750:intron | 35.0% | |
! | TGTTTTCTTTGCAAGGTCAA+TGG | - | chr8_2:54821519-54821538 | None:intergenic | 35.0% |
! | GAGAGAATGTTTTCTTTGCA+AGG | - | chr8_2:54821526-54821545 | None:intergenic | 35.0% |
GGTAACCTAAATCTAGTAGA+AGG | - | chr8_2:54821623-54821642 | None:intergenic | 35.0% | |
! | CTTAACAAGTTGGAGATGAA+TGG | + | chr8_2:54821734-54821753 | Msa1255750:CDS | 35.0% |
AGTTGGAGATGAATGGTATT+CGG | + | chr8_2:54821741-54821760 | Msa1255750:CDS | 35.0% | |
TTTGAGCTTGCACTTCAGTT+TGG | + | chr8_2:54818909-54818928 | Msa1255750:CDS | 40.0% | |
! | ACTCAAGGTGTGTTGATCAA+AGG | + | chr8_2:54819017-54819036 | Msa1255750:CDS | 40.0% |
TGTGTGCACTTTCTAATGCT+TGG | - | chr8_2:54819046-54819065 | None:intergenic | 40.0% | |
! | AGCATTAGAAAGTGCACACA+AGG | + | chr8_2:54819046-54819065 | Msa1255750:CDS | 40.0% |
! | ATGGCAAGTTGAGAGAACAA+TGG | - | chr8_2:54819102-54819121 | None:intergenic | 40.0% |
AAGACAGGAACTCTCACTAT+TGG | + | chr8_2:54819184-54819203 | Msa1255750:CDS | 40.0% | |
AGACAGGAACTCTCACTATT+GGG | + | chr8_2:54819185-54819204 | Msa1255750:CDS | 40.0% | |
GACACAAATTCCTTTGCTTC+TGG | - | chr8_2:54819468-54819487 | None:intergenic | 40.0% | |
TTTGTGTCTATTGCTGGACA+TGG | + | chr8_2:54819480-54819499 | Msa1255750:CDS | 40.0% | |
! | CATGGCTCAAACAGGAATTT+TGG | + | chr8_2:54819617-54819636 | Msa1255750:CDS | 40.0% |
! | TGGAGAAATTGTCGGAGTTT+TGG | + | chr8_2:54819650-54819669 | Msa1255750:CDS | 40.0% |
ATGGTGACAGGTGATAATTG+GGG | + | chr8_2:54819747-54819766 | Msa1255750:CDS | 40.0% | |
! | AGCTGGTATTGAAACTGTCA+TGG | + | chr8_2:54819794-54819813 | Msa1255750:CDS | 40.0% |
TATTGAAACTGTCATGGCTG+AGG | + | chr8_2:54819800-54819819 | Msa1255750:CDS | 40.0% | |
! | ACCACGTGACGTGATTTTAT+TGG | + | chr8_2:54820101-54820120 | Msa1255750:intron | 40.0% |
! | CCACGTGACGTGATTTTATT+GGG | + | chr8_2:54820102-54820121 | Msa1255750:intron | 40.0% |
!! | GCAACCGCGTTTAATTTGTA+AGG | + | chr8_2:54820150-54820169 | Msa1255750:intron | 40.0% |
!!! | ACTCCGTTTTTTAGGAGAAG+GGG | - | chr8_2:54820300-54820319 | None:intergenic | 40.0% |
!!! | CACTCCGTTTTTTAGGAGAA+GGG | - | chr8_2:54820301-54820320 | None:intergenic | 40.0% |
!!! | ACACTCCGTTTTTTAGGAGA+AGG | - | chr8_2:54820302-54820321 | None:intergenic | 40.0% |
TCGATACCCATACAAATGAG+CGG | + | chr8_2:54820553-54820572 | Msa1255750:intron | 40.0% | |
!!! | GTTTTGGGATCCATAATTGG+TGG | - | chr8_2:54820585-54820604 | None:intergenic | 40.0% |
ACTCAGTTCATAACAGACCA+TGG | - | chr8_2:54820808-54820827 | None:intergenic | 40.0% | |
!! | TTTCTGGCTTGTCCATACTT+TGG | - | chr8_2:54820880-54820899 | None:intergenic | 40.0% |
! | GGACCTGAATCATCTTTTTC+TGG | - | chr8_2:54820896-54820915 | None:intergenic | 40.0% |
ACAAAATTTGGCAAGTCGTG+GGG | - | chr8_2:54820968-54820987 | None:intergenic | 40.0% | |
GTATGATATGTTGACATCGC+AGG | - | chr8_2:54821097-54821116 | None:intergenic | 40.0% | |
!! | TTTTGGTTACCAGATCAGAC+TGG | - | chr8_2:54821141-54821160 | None:intergenic | 40.0% |
! | TATACTTGGTGGCAGAATTC+TGG | + | chr8_2:54821341-54821360 | Msa1255750:intron | 40.0% |
CAGAATTCTGGATACACTGT+AGG | + | chr8_2:54821353-54821372 | Msa1255750:intron | 40.0% | |
TTCTGGATACACTGTAGGAA+TGG | + | chr8_2:54821358-54821377 | Msa1255750:CDS | 40.0% | |
! | AAAAGTATGCCAGCAGCAAT+AGG | - | chr8_2:54821599-54821618 | None:intergenic | 40.0% |
! | CTAGATTTAGGTTACCACCT+TGG | + | chr8_2:54821627-54821646 | Msa1255750:CDS | 40.0% |
ACCAACCAAGCTTAACAAGT+TGG | + | chr8_2:54821724-54821743 | Msa1255750:CDS | 40.0% | |
!! | TCCAACTTGTTAAGCTTGGT+TGG | - | chr8_2:54821728-54821747 | None:intergenic | 40.0% |
!! | CATCTCCAACTTGTTAAGCT+TGG | - | chr8_2:54821732-54821751 | None:intergenic | 40.0% |
! | ATAGCTTGTCCTTGTGCTCT+TGG | + | chr8_2:54818948-54818967 | Msa1255750:CDS | 45.0% |
! | CAAGGTGTGTTGATCAAAGG+TGG | + | chr8_2:54819020-54819039 | Msa1255750:CDS | 45.0% |
TCTCACTATTGGGAAGACAG+TGG | + | chr8_2:54819195-54819214 | Msa1255750:CDS | 45.0% | |
TTCATCATGGCCAGAAGCAA+AGG | + | chr8_2:54819455-54819474 | Msa1255750:CDS | 45.0% | |
TATTGCTGGACATGGAGTGA+AGG | + | chr8_2:54819488-54819507 | Msa1255750:CDS | 45.0% | |
GCTGAAAACATGGCTCAAAC+AGG | + | chr8_2:54819609-54819628 | Msa1255750:CDS | 45.0% | |
!! | TCCTTTAGGGTTTGCTCTCA+TGG | + | chr8_2:54819909-54819928 | Msa1255750:intron | 45.0% |
ACCATGAGAGCAAACCCTAA+AGG | - | chr8_2:54819913-54819932 | None:intergenic | 45.0% | |
CCCAATAAAATCACGTCACG+TGG | - | chr8_2:54820105-54820124 | None:intergenic | 45.0% | |
!!! | CTCCGTTTTTTAGGAGAAGG+GGG | - | chr8_2:54820299-54820318 | None:intergenic | 45.0% |
! | TGCTGCAGCAATTCCGTTTT+TGG | - | chr8_2:54820471-54820490 | None:intergenic | 45.0% |
CGATACCCATACAAATGAGC+GGG | + | chr8_2:54820554-54820573 | Msa1255750:intron | 45.0% | |
TCGAACCCGCTCATTTGTAT+GGG | - | chr8_2:54820562-54820581 | None:intergenic | 45.0% | |
! | AAGTCGTGGGGTCTTATCTT+TGG | - | chr8_2:54820956-54820975 | None:intergenic | 45.0% |
!! | GGAGTTGATTTGGCACAAAC+AGG | - | chr8_2:54821049-54821068 | None:intergenic | 45.0% |
! | AGATCAGACTGGTGGGTATA+CGG | - | chr8_2:54821130-54821149 | None:intergenic | 45.0% |
GGATACACTGTAGGAATGGT+AGG | + | chr8_2:54821362-54821381 | Msa1255750:CDS | 45.0% | |
ACTGTAGGAATGGTAGGAGA+TGG | + | chr8_2:54821368-54821387 | Msa1255750:CDS | 45.0% | |
AGTAGCAGCTGATGTTGGAA+TGG | + | chr8_2:54821412-54821431 | Msa1255750:CDS | 45.0% | |
GCTGATGTTGGAATGGCAAT+TGG | + | chr8_2:54821419-54821438 | Msa1255750:CDS | 45.0% | |
TATGCCAGCAGCAATAGGAA+TGG | - | chr8_2:54821594-54821613 | None:intergenic | 45.0% | |
AGAAGAGCAAACGACACTGA+TGG | - | chr8_2:54821681-54821700 | None:intergenic | 45.0% | |
! | ACCTTGAGTTGCACCAACTC+CGG | - | chr8_2:54819006-54819025 | None:intergenic | 50.0% |
!! | TGAACTTGTTGCTGCAGCAG+AGG | + | chr8_2:54819264-54819283 | Msa1255750:CDS | 50.0% |
TTGTTGCTGCAGCAGAGGTA+AGG | + | chr8_2:54819269-54819288 | Msa1255750:intron | 50.0% | |
GGCCCCCTTCTCCTAAAAAA+CGG | + | chr8_2:54820294-54820313 | Msa1255750:intron | 50.0% | |
AACGGAATTGCTGCAGCACA+AGG | + | chr8_2:54820473-54820492 | Msa1255750:intron | 50.0% | |
GTCGAACCCGCTCATTTGTA+TGG | - | chr8_2:54820563-54820582 | None:intergenic | 50.0% | |
!! | ACTAGCTTTCAGCCACCACA+AGG | + | chr8_2:54820618-54820637 | Msa1255750:intron | 50.0% |
!! | AGCTTGGCTTGGTGTTGTTG+GGG | - | chr8_2:54820836-54820855 | None:intergenic | 50.0% |
!! | GAGCTTGGCTTGGTGTTGTT+GGG | - | chr8_2:54820837-54820856 | None:intergenic | 50.0% |
! | GTCCATACTTTGGTGCGTTG+TGG | - | chr8_2:54820870-54820889 | None:intergenic | 50.0% |
! | GGTCATGCATTGATGGGTGT+GGG | - | chr8_2:54820927-54820946 | None:intergenic | 50.0% |
! | TCGTGGGGTCTTATCTTTGG+AGG | - | chr8_2:54820953-54820972 | None:intergenic | 50.0% |
! | ACTTGCTTGGCGTTTGCTGA+GGG | - | chr8_2:54821007-54821026 | None:intergenic | 50.0% |
! | TACTTGCTTGGCGTTTGCTG+AGG | - | chr8_2:54821008-54821027 | None:intergenic | 50.0% |
GTATACCCACCAGTCTGATC+TGG | + | chr8_2:54821129-54821148 | Msa1255750:intron | 50.0% | |
GGTTACCAGATCAGACTGGT+GGG | - | chr8_2:54821137-54821156 | None:intergenic | 50.0% | |
TGGTTACCAGATCAGACTGG+TGG | - | chr8_2:54821138-54821157 | None:intergenic | 50.0% | |
! | CCTCTTCTGACAGGTGGTTT+TGG | - | chr8_2:54821158-54821177 | None:intergenic | 50.0% |
CCAAAACCACCTGTCAGAAG+AGG | + | chr8_2:54821155-54821174 | Msa1255750:intron | 50.0% | |
AGGAATCCTCTTCTGACAGG+TGG | - | chr8_2:54821164-54821183 | None:intergenic | 50.0% | |
TGCAGGAATCCTCTTCTGAC+AGG | - | chr8_2:54821167-54821186 | None:intergenic | 50.0% | |
ACATCAGCTGCTACTAGTGC+TGG | - | chr8_2:54821407-54821426 | None:intergenic | 50.0% | |
GCACTAGTAGCAGCTGATGT+TGG | + | chr8_2:54821407-54821426 | Msa1255750:CDS | 50.0% | |
GTTGGAATGGCAATTGGTGC+TGG | + | chr8_2:54821425-54821444 | Msa1255750:CDS | 50.0% | |
CTAGCCATTCCTATTGCTGC+TGG | + | chr8_2:54821587-54821606 | Msa1255750:CDS | 50.0% | |
AGGTTACCACCTTGGATTGC+TGG | + | chr8_2:54821635-54821654 | Msa1255750:CDS | 50.0% | |
ATTGCAGCTCCAGCAATCCA+AGG | - | chr8_2:54821647-54821666 | None:intergenic | 50.0% | |
TTGGATTGCTGGAGCTGCAA+TGG | + | chr8_2:54821646-54821665 | Msa1255750:CDS | 50.0% | |
AACCATGACCGCTGTAGGAG+TGG | - | chr8_2:54818979-54818998 | None:intergenic | 55.0% | |
ACTCCTACAGCGGTCATGGT+TGG | + | chr8_2:54818978-54818997 | Msa1255750:CDS | 55.0% | |
GTACCAACCATGACCGCTGT+AGG | - | chr8_2:54818984-54819003 | None:intergenic | 55.0% | |
! | ACAGCGGTCATGGTTGGTAC+CGG | + | chr8_2:54818984-54819003 | Msa1255750:CDS | 55.0% |
! | GTCATGGTTGGTACCGGAGT+TGG | + | chr8_2:54818990-54819009 | Msa1255750:CDS | 55.0% |
!! | ACCGGAGTTGGTGCAACTCA+AGG | + | chr8_2:54819002-54819021 | Msa1255750:CDS | 55.0% |
GCGGGTTCGACCACCAATTA+TGG | + | chr8_2:54820572-54820591 | Msa1255750:intron | 55.0% | |
!! | CGAGCTTGGCTTGGTGTTGT+TGG | - | chr8_2:54820838-54820857 | None:intergenic | 55.0% |
GGCCACAACGCACCAAAGTA+TGG | + | chr8_2:54820865-54820884 | Msa1255750:intron | 55.0% | |
! | CGGTCATGCATTGATGGGTG+TGG | - | chr8_2:54820928-54820947 | None:intergenic | 55.0% |
! | AGGCGCGGTCATGCATTGAT+GGG | - | chr8_2:54820933-54820952 | None:intergenic | 55.0% |
! | GGGTCTTATCTTTGGAGGCG+CGG | - | chr8_2:54820948-54820967 | None:intergenic | 55.0% |
! | ACTGGTGGGTATACGGTTCG+TGG | - | chr8_2:54821123-54821142 | None:intergenic | 55.0% |
! | GTGGCTAGGCCAAGAGCACA+AGG | - | chr8_2:54818960-54818979 | None:intergenic | 60.0% |
TGGCCTAGCCACTCCTACAG+CGG | + | chr8_2:54818968-54818987 | Msa1255750:CDS | 60.0% | |
TGACCGCTGTAGGAGTGGCT+AGG | - | chr8_2:54818974-54818993 | None:intergenic | 60.0% | |
AGCCACTCCTACAGCGGTCA+TGG | + | chr8_2:54818974-54818993 | Msa1255750:CDS | 60.0% | |
CCAAGCCAAGCTCGCACCAT+CGG | + | chr8_2:54820844-54820863 | Msa1255750:intron | 60.0% | |
! | CTTTGGTGCGTTGTGGCCGA+TGG | - | chr8_2:54820863-54820882 | None:intergenic | 60.0% |
! | TGATGGGTGTGGGCATGTCG+AGG | - | chr8_2:54820917-54820936 | None:intergenic | 60.0% |
GAGGCGCGGTCATGCATTGA+TGG | - | chr8_2:54820934-54820953 | None:intergenic | 60.0% | |
! | CTTGGCGTTTGCTGAGGGAC+CGG | - | chr8_2:54821002-54821021 | None:intergenic | 60.0% |
GCAGCTCCAGCAATCCAAGG+TGG | - | chr8_2:54821644-54821663 | None:intergenic | 60.0% | |
CCGATGGTGCGAGCTTGGCT+TGG | - | chr8_2:54820847-54820866 | None:intergenic | 65.0% | |
TGTGGCCGATGGTGCGAGCT+TGG | - | chr8_2:54820852-54820871 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8_2 | gene | 54818900 | 54821772 | 54818900 | ID=Msa1255750;Name=Msa1255750 |
chr8_2 | mRNA | 54818900 | 54821772 | 54818900 | ID=Msa1255750-mRNA-1;Parent=Msa1255750;Name=Msa1255750-mRNA-1;_AED=0.38;_eAED=0.38;_QI=0|0.66|0|1|1|1|4|0|396 |
chr8_2 | exon | 54818900 | 54819067 | 54818900 | ID=Msa1255750-mRNA-1:exon:16979;Parent=Msa1255750-mRNA-1 |
chr8_2 | exon | 54819163 | 54819285 | 54819163 | ID=Msa1255750-mRNA-1:exon:16980;Parent=Msa1255750-mRNA-1 |
chr8_2 | exon | 54819381 | 54819863 | 54819381 | ID=Msa1255750-mRNA-1:exon:16981;Parent=Msa1255750-mRNA-1 |
chr8_2 | exon | 54821356 | 54821772 | 54821356 | ID=Msa1255750-mRNA-1:exon:16982;Parent=Msa1255750-mRNA-1 |
chr8_2 | CDS | 54818900 | 54819067 | 54818900 | ID=Msa1255750-mRNA-1:cds;Parent=Msa1255750-mRNA-1 |
chr8_2 | CDS | 54819163 | 54819285 | 54819163 | ID=Msa1255750-mRNA-1:cds;Parent=Msa1255750-mRNA-1 |
chr8_2 | CDS | 54819381 | 54819863 | 54819381 | ID=Msa1255750-mRNA-1:cds;Parent=Msa1255750-mRNA-1 |
chr8_2 | CDS | 54821356 | 54821772 | 54821356 | ID=Msa1255750-mRNA-1:cds;Parent=Msa1255750-mRNA-1 |
Gene Sequence |
Protein sequence |