AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0707330


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0707330 MtrunA17_Chr8g0388331 98.571 210 3 0 1 210 1 210 1.20e-151 419
Msa0707330 MtrunA17_Chr4g0055421 54.762 210 95 0 1 210 1 210 2.05e-86 254
Msa0707330 MtrunA17_Chr8g0346911 62.564 195 73 0 16 210 39 233 3.00e-86 254
Msa0707330 MtrunA17_Chr5g0446931 55.714 210 93 0 1 210 16 225 6.37e-83 246
Msa0707330 MtrunA17_Chr4g0076551 57.949 195 82 0 16 210 32 226 1.31e-82 245
Msa0707330 MtrunA17_Chr3g0102821 58.462 195 81 0 16 210 31 225 4.31e-82 243
Msa0707330 MtrunA17_Chr1g0151621 63.102 187 69 0 21 207 60 246 5.84e-82 244
Msa0707330 MtrunA17_Chr2g0290771 55.789 190 84 0 21 210 1 190 4.82e-76 227
Msa0707330 MtrunA17_Chr2g0290781 55.615 187 83 0 24 210 44 230 3.99e-70 213
Msa0707330 MtrunA17_Chr8g0341941 56.842 190 82 0 21 210 66 255 4.66e-69 211
Msa0707330 MtrunA17_Chr2g0290751 53.297 182 85 0 11 192 29 210 5.09e-64 197
Msa0707330 MtrunA17_Chr2g0290761 51.042 192 92 1 3 192 19 210 3.82e-63 195
Msa0707330 MtrunA17_Chr4g0063121 42.541 181 84 1 30 210 7 167 1.13e-50 163
Msa0707330 MtrunA17_Chr3g0126811 65.455 110 37 1 1 109 1 110 8.18e-45 145
Msa0707330 MtrunA17_Chr3g0126801 63.636 99 36 0 112 210 6 104 7.11e-43 140
Msa0707330 MtrunA17_Chr5g0399921 53.043 115 53 1 1 115 1 114 3.14e-38 128
Msa0707330 MtrunA17_Chr8g0388321 42.754 138 51 3 1 129 46 164 4.26e-29 106
Msa0707330 MtrunA17_Chr8g0388311 50.633 79 39 0 132 210 1 79 3.22e-24 91.7
Msa0707330 MtrunA17_Chr5g0399931 48.052 77 39 1 132 208 1 76 6.71e-20 80.1
Msa0707330 MtrunA17_Chr4g0059951 30.488 164 96 5 16 175 360 509 1.74e-12 65.5
Msa0707330 MtrunA17_Chr1g0188171 36.719 128 68 5 49 173 25 142 1.08e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0707330 AT1G64480.2 66.190 210 71 0 1 210 5 214 1.51e-93 272
Msa0707330 AT1G64480.3 66.190 210 71 0 1 210 5 214 1.51e-93 272
Msa0707330 AT1G64480.1 66.190 210 71 0 1 210 5 214 1.51e-93 272
Msa0707330 AT5G24270.4 63.077 195 72 0 16 210 20 214 6.64e-87 256
Msa0707330 AT5G24270.1 63.077 195 72 0 16 210 20 214 6.64e-87 256
Msa0707330 AT5G24270.2 63.077 195 72 0 16 210 20 214 6.64e-87 256
Msa0707330 AT4G17615.4 56.190 210 92 0 1 210 1 210 7.91e-86 253
Msa0707330 AT4G17615.1 56.190 210 92 0 1 210 1 210 7.91e-86 253
Msa0707330 AT4G17615.5 56.190 210 92 0 1 210 1 210 7.91e-86 253
Msa0707330 AT5G47100.1 55.238 210 94 0 1 210 1 210 5.48e-85 251
Msa0707330 AT5G24270.5 63.978 186 67 0 25 210 4 189 1.64e-84 249
Msa0707330 AT1G64480.4 65.803 193 66 0 1 193 5 197 1.10e-83 247
Msa0707330 AT4G26570.1 55.769 208 92 0 3 210 18 225 2.69e-81 242
Msa0707330 AT5G55990.1 53.810 210 97 0 1 210 16 225 1.62e-79 237
Msa0707330 AT5G55990.2 53.810 210 97 0 1 210 16 225 1.62e-79 237
Msa0707330 AT4G33000.2 55.981 209 91 1 3 210 38 246 3.85e-79 237
Msa0707330 AT4G26570.2 57.949 195 78 1 20 210 35 229 5.20e-79 236
Msa0707330 AT4G33000.1 55.981 209 91 1 3 210 48 256 6.06e-79 237
Msa0707330 AT4G17615.3 55.612 196 87 0 1 196 1 196 3.55e-76 229
Msa0707330 AT4G16350.2 50.485 206 97 2 5 210 19 219 2.33e-69 211
Msa0707330 AT4G16350.1 50.485 206 97 2 5 210 19 219 2.33e-69 211
Msa0707330 AT5G24270.3 60.510 157 62 0 54 210 11 167 2.31e-68 207
Msa0707330 AT4G17615.2 57.962 157 66 0 54 210 12 168 8.39e-68 206
Msa0707330 AT4G01420.1 47.317 205 103 2 1 203 1 202 2.91e-61 190
Msa0707330 AT4G01420.2 47.668 193 100 1 1 193 1 192 6.03e-57 179
Msa0707330 AT5G47100.2 52.564 156 74 0 1 156 1 156 7.60e-57 178
Msa0707330 AT4G26560.1 44.503 191 93 2 33 210 23 213 5.19e-53 169
Msa0707330 AT4G33000.4 52.903 155 72 1 3 156 38 192 1.95e-50 162
Msa0707330 AT4G33000.6 52.903 155 72 1 3 156 38 192 1.95e-50 162
Msa0707330 AT4G33000.5 52.564 156 73 1 3 157 38 193 2.15e-50 163
Msa0707330 AT4G33000.3 55.963 109 47 1 3 110 38 146 1.43e-33 118

Find 46 sgRNAs with CRISPR-Local

Find 124 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCAATGGTTATTTGATTT+TGG 0.175176 4_4:+80563804 Msa0707330:five_prime_UTR
CGTAACGGAGTAATTGAATT+TGG 0.204781 4_4:+80564953 Msa0707330:CDS
CTTTGCCTACCTAACATTAA+TGG 0.210865 4_4:+80566301 Msa0707330:three_prime_UTR
TTCTTCTCTTCAGATGTCTT+TGG 0.273008 4_4:-80565007 None:intergenic
TGTTGAATCCATTGTGGAAA+AGG 0.373453 4_4:+80565740 Msa0707330:CDS
TAAGTGAATCCATTAATGTT+AGG 0.375159 4_4:-80566310 None:intergenic
AAGGAAACCTACTTTAGATA+TGG 0.376068 4_4:-80565965 None:intergenic
AGGAGATGGGAAGATTGATA+TGG 0.412059 4_4:+80565886 Msa0707330:CDS
TTGAAGATCAATGCACTAGA+AGG 0.415628 4_4:+80566164 Msa0707330:three_prime_UTR
CTCGGTGTGCAAAACAAAGC+TGG 0.421434 4_4:-80566119 None:intergenic
CATTTAAACTGTTTGACCTT+GGG 0.422487 4_4:+80565128 Msa0707330:CDS
TTCAATATGTACGCTTGCTT+AGG 0.424749 4_4:+80566258 Msa0707330:three_prime_UTR
GCCTGTCAGGGATATAACTA+TGG 0.426019 4_4:+80566090 Msa0707330:intron
ACAATCCTCCATTCTTGCCT+TGG 0.428593 4_4:+80563936 Msa0707330:CDS
AGTAGTTCAATTATTGATGA+TGG 0.437437 4_4:+80564398 Msa0707330:CDS
CTCGCTATGCTCAATGTATC+CGG 0.442215 4_4:-80565155 None:intergenic
GCATTTAAACTGTTTGACCT+TGG 0.472507 4_4:+80565127 Msa0707330:CDS
CTGTTTGACCTTGGGAAGAC+CGG 0.474090 4_4:+80565136 Msa0707330:CDS
TGATGTCTCCAAGGCAAGAA+TGG 0.479240 4_4:-80563944 None:intergenic
GAAGTTAAAGGAGATGGTCT+TGG 0.487507 4_4:+80565677 Msa0707330:intron
AGCAGAATCTACTTGCAAGC+AGG 0.490658 4_4:+80564673 Msa0707330:CDS
GTGTCAGGTCCTATTGTGTC+AGG 0.497078 4_4:+80563828 Msa0707330:five_prime_UTR
TATTTCTGAAAAGTGCGAGT+TGG 0.503450 4_4:-80564644 None:intergenic
ATGGAGGAGGTTGACTCAAA+AGG 0.503493 4_4:+80565866 Msa0707330:CDS
GAGGTTGACTCAAAAGGAGA+TGG 0.510798 4_4:+80565872 Msa0707330:CDS
AGAGTGCTGCCTGACACAAT+AGG 0.511060 4_4:-80563837 None:intergenic
GTCATGATCTTAAGAAGAGA+AGG 0.521718 4_4:-80565938 None:intergenic
CACACTGAAGTTAAAGGAGA+TGG 0.544821 4_4:+80565671 Msa0707330:intron
TGAATCCATTAATGTTAGGT+AGG 0.556380 4_4:-80566306 None:intergenic
GTACTTACATGATGTCTCCA+AGG 0.563471 4_4:-80563953 None:intergenic
TTTGACAGTTACTGTGAATG+AGG 0.571808 4_4:+80564343 Msa0707330:intron
CGATATTGTTGAATCCATTG+TGG 0.573614 4_4:+80565734 Msa0707330:CDS
TCGGTGTGCAAAACAAAGCT+GGG 0.576484 4_4:-80566118 None:intergenic
GGAAGATTGATATGGAAGAG+TGG 0.580086 4_4:+80565894 Msa0707330:CDS
ATGTACGCTTGCTTAGGCTT+AGG 0.582414 4_4:+80566264 Msa0707330:three_prime_UTR
GCAGAATCTACTTGCAAGCA+GGG 0.583200 4_4:+80564674 Msa0707330:CDS
AGTTACTGTGAATGAGGTTG+AGG 0.584753 4_4:+80564349 Msa0707330:intron
CATTAATGTTAGGTAGGCAA+AGG 0.590979 4_4:-80566300 None:intergenic
AGGTTGACTCAAAAGGAGAT+GGG 0.599352 4_4:+80565873 Msa0707330:CDS
ATGTTTGATATTAAGCGTAA+CGG 0.599376 4_4:+80564938 Msa0707330:CDS
CAATGTATCCGGTCTTCCCA+AGG 0.602208 4_4:-80565144 None:intergenic
TGATGATGGCTGCATTCACA+AGG 0.608057 4_4:+80564412 Msa0707330:CDS
AGCAAGCGTACATATTGAAG+CGG 0.623083 4_4:-80566254 None:intergenic
TGTCTCCAAGGCAAGAATGG+AGG 0.659508 4_4:-80563941 None:intergenic
TTGTTGCTAATCTTCCACCT+CGG 0.668338 4_4:-80566137 None:intergenic
CGGATACATTGAGCATAGCG+AGG 0.692909 4_4:+80565156 Msa0707330:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTAAATGAAATTTTATAG+TGG + chr4_4:80564820-80564839 Msa0707330:intron 10.0%
!!! ATTTTAATGTCACTTTTTAT+AGG - chr4_4:80565496-80565515 None:intergenic 15.0%
!!! TTCATAGTTACTATTATTTT+TGG + chr4_4:80565992-80566011 Msa0707330:intron 15.0%
!!! TTCACAAGGTAAATTTATTT+TGG + chr4_4:80564426-80564445 Msa0707330:intron 20.0%
!! TTCATATAGAGAGAAATATT+TGG - chr4_4:80564488-80564507 None:intergenic 20.0%
!! ACTGTAAGAACAAAAAAAAA+TGG - chr4_4:80565106-80565125 None:intergenic 20.0%
!! TTTGTATTAATTTACCCTTT+AGG + chr4_4:80565281-80565300 Msa0707330:intron 20.0%
!! AGATAAAGATTGCATAATTA+TGG + chr4_4:80565422-80565441 Msa0707330:intron 20.0%
!!! TCAAAATGGTCTTATATTTA+AGG + chr4_4:80565517-80565536 Msa0707330:intron 20.0%
!! AAGAGATAAGAATTAAATTG+AGG - chr4_4:80565817-80565836 None:intergenic 20.0%
!! AATAGTAACTATGAAATTGA+AGG - chr4_4:80565987-80566006 None:intergenic 20.0%
!! TTAACAGTAAAAGATTAGAA+TGG - chr4_4:80566033-80566052 None:intergenic 20.0%
!! AGTTTTTATCAATGCTTCAA+TGG + chr4_4:80563790-80563809 Msa0707330:five_prime_UTR 25.0%
!!! CTTCAATGGTTATTTGATTT+TGG + chr4_4:80563804-80563823 Msa0707330:five_prime_UTR 25.0%
! AGTAGTTCAATTATTGATGA+TGG + chr4_4:80564398-80564417 Msa0707330:CDS 25.0%
! CCATAATTACAATTGTATGA+GGG - chr4_4:80564754-80564773 None:intergenic 25.0%
! TCCATAATTACAATTGTATG+AGG - chr4_4:80564755-80564774 None:intergenic 25.0%
!!! TAACAAAAATCTCTGAAACA+TGG + chr4_4:80564784-80564803 Msa0707330:intron 25.0%
! ATGTTTGATATTAAGCGTAA+CGG + chr4_4:80564938-80564957 Msa0707330:CDS 25.0%
! AAAGTGAAAATGATGAACAA+TGG - chr4_4:80565201-80565220 None:intergenic 25.0%
!! TTGTTCATCATTTTCACTTT+AGG + chr4_4:80565201-80565220 Msa0707330:intron 25.0%
! GTGACATTAAAATCTCAAAA+TGG + chr4_4:80565503-80565522 Msa0707330:intron 25.0%
!!! TGAACCTTTTTTGTACATAA+TGG + chr4_4:80565648-80565667 Msa0707330:intron 25.0%
! GATAAATGTATGGTTTCATA+TGG - chr4_4:80565773-80565792 None:intergenic 25.0%
! TTCTTATCTCTTATACTTCT+TGG + chr4_4:80565825-80565844 Msa0707330:intron 25.0%
! TAAGTGAATCCATTAATGTT+AGG - chr4_4:80566313-80566332 None:intergenic 25.0%
!! TTTTGAAGAATTCAGTAGTG+AGG + chr4_4:80563742-80563761 Msa0707330:five_prime_UTR 30.0%
!! TTATTTGATTTTGGTGTGTC+AGG + chr4_4:80563813-80563832 Msa0707330:five_prime_UTR 30.0%
!! GATTGTTCTTGCTTAGTTTT+TGG - chr4_4:80563922-80563941 None:intergenic 30.0%
! CACATCTTCAATCTAAAGTA+TGG + chr4_4:80564128-80564147 Msa0707330:intron 30.0%
!!! TTTTGACTTTTAGTCACTCA+TGG - chr4_4:80564199-80564218 None:intergenic 30.0%
TAATCATATATGAGCCTGTT+TGG - chr4_4:80564254-80564273 None:intergenic 30.0%
TATACATGTCAGATTTCTTG+TGG + chr4_4:80564289-80564308 Msa0707330:intron 30.0%
!!! TTGTGGTTTTAACTCTGATT+TGG + chr4_4:80564306-80564325 Msa0707330:intron 30.0%
CCCTCATACAATTGTAATTA+TGG + chr4_4:80564751-80564770 Msa0707330:intron 30.0%
TGAAACATGGATGAAATTCA+TGG + chr4_4:80564797-80564816 Msa0707330:intron 30.0%
CATTTAAACTGTTTGACCTT+GGG + chr4_4:80565128-80565147 Msa0707330:CDS 30.0%
ATGAACAATGGAAAGGTTAA+AGG - chr4_4:80565189-80565208 None:intergenic 30.0%
GAAAATGATGAACAATGGAA+AGG - chr4_4:80565196-80565215 None:intergenic 30.0%
ACTACTAAAGTTACATGAGA+AGG - chr4_4:80565576-80565595 None:intergenic 30.0%
! TGTGCCATTATGTACAAAAA+AGG - chr4_4:80565655-80565674 None:intergenic 30.0%
GAAACTATAGAAATTGAAGG+CGG - chr4_4:80565795-80565814 None:intergenic 30.0%
GAGGAAACTATAGAAATTGA+AGG - chr4_4:80565798-80565817 None:intergenic 30.0%
TCCATTGTCTAAAAAAGATC+AGG - chr4_4:80565851-80565870 None:intergenic 30.0%
!!! TGATCTTTTTTAGACAATGG+AGG + chr4_4:80565850-80565869 Msa0707330:intron 30.0%
AAGGAAACCTACTTTAGATA+TGG - chr4_4:80565968-80565987 None:intergenic 30.0%
TGAATCCATTAATGTTAGGT+AGG - chr4_4:80566309-80566328 None:intergenic 30.0%
!!! AGCTGTTTTTGCTTGATGAA+AGG + chr4_4:80563892-80563911 Msa0707330:CDS 35.0%
CTTTAGATTGAAGATGTGTC+TGG - chr4_4:80564126-80564145 None:intergenic 35.0%
CTCAATTGAATCTCTCTTCA+CGG + chr4_4:80564171-80564190 Msa0707330:intron 35.0%
AACATTTGCTCAAACCAAAC+AGG + chr4_4:80564237-80564256 Msa0707330:intron 35.0%
CATGTATAGAACTATAGCAG+CGG - chr4_4:80564277-80564296 None:intergenic 35.0%
CAGTAACTGTCAAATGGTAA+AGG - chr4_4:80564337-80564356 None:intergenic 35.0%
CATTCACAGTAACTGTCAAA+TGG - chr4_4:80564343-80564362 None:intergenic 35.0%
TTTGACAGTTACTGTGAATG+AGG + chr4_4:80564343-80564362 Msa0707330:intron 35.0%
CTCAAGTATGATGACAGTTA+GGG - chr4_4:80564554-80564573 None:intergenic 35.0%
ACTCAAGTATGATGACAGTT+AGG - chr4_4:80564555-80564574 None:intergenic 35.0%
CGTCAAGACAATTTATTTGC+AGG + chr4_4:80564614-80564633 Msa0707330:intron 35.0%
CAAGACAATTTATTTGCAGG+AGG + chr4_4:80564617-80564636 Msa0707330:intron 35.0%
! TATTTCTGAAAAGTGCGAGT+TGG - chr4_4:80564647-80564666 None:intergenic 35.0%
AAGCTAAGAAAACTGAATGC+AGG + chr4_4:80564907-80564926 Msa0707330:intron 35.0%
! CGTAACGGAGTAATTGAATT+TGG + chr4_4:80564953-80564972 Msa0707330:CDS 35.0%
TTCTTCTCTTCAGATGTCTT+TGG - chr4_4:80565010-80565029 None:intergenic 35.0%
GCATTTAAACTGTTTGACCT+TGG + chr4_4:80565127-80565146 Msa0707330:CDS 35.0%
! AAATTGATTCTGTGCAGGTT+TGG - chr4_4:80565370-80565389 None:intergenic 35.0%
! GACATAAATTGATTCTGTGC+AGG - chr4_4:80565375-80565394 None:intergenic 35.0%
! GGTCTTATATTTAAGGACAG+AGG + chr4_4:80565524-80565543 Msa0707330:intron 35.0%
TAATGGCACACTGAAGTTAA+AGG + chr4_4:80565665-80565684 Msa0707330:intron 35.0%
CGATATTGTTGAATCCATTG+TGG + chr4_4:80565734-80565753 Msa0707330:CDS 35.0%
TGTTGAATCCATTGTGGAAA+AGG + chr4_4:80565740-80565759 Msa0707330:CDS 35.0%
! GTTAAGAACCTTTTCCACAA+TGG - chr4_4:80565751-80565770 None:intergenic 35.0%
ATTGAAGGCGGATAAATGTA+TGG - chr4_4:80565783-80565802 None:intergenic 35.0%
!!! GCCTGATCTTTTTTAGACAA+TGG + chr4_4:80565847-80565866 Msa0707330:intron 35.0%
!!! TCTTTTTTAGACAATGGAGG+AGG + chr4_4:80565853-80565872 Msa0707330:intron 35.0%
GTCATGATCTTAAGAAGAGA+AGG - chr4_4:80565941-80565960 None:intergenic 35.0%
TTGAAGATCAATGCACTAGA+AGG + chr4_4:80566164-80566183 Msa0707330:three_prime_UTR 35.0%
TTCAATATGTACGCTTGCTT+AGG + chr4_4:80566258-80566277 Msa0707330:three_prime_UTR 35.0%
CATTAATGTTAGGTAGGCAA+AGG - chr4_4:80566303-80566322 None:intergenic 35.0%
CTTTGCCTACCTAACATTAA+TGG + chr4_4:80566301-80566320 Msa0707330:three_prime_UTR 35.0%
GTACTTACATGATGTCTCCA+AGG - chr4_4:80563956-80563975 None:intergenic 40.0%
AGTTACTGTGAATGAGGTTG+AGG + chr4_4:80564349-80564368 Msa0707330:intron 40.0%
! GCAGCTTTGACAAAATCACA+TGG + chr4_4:80565234-80565253 Msa0707330:intron 40.0%
!!! TTCTGTGCAGGTTTGGTTTT+GGG - chr4_4:80565363-80565382 None:intergenic 40.0%
!! ATTCTGTGCAGGTTTGGTTT+TGG - chr4_4:80565364-80565383 None:intergenic 40.0%
CACACTGAAGTTAAAGGAGA+TGG + chr4_4:80565671-80565690 Msa0707330:intron 40.0%
GAAGTTAAAGGAGATGGTCT+TGG + chr4_4:80565677-80565696 Msa0707330:intron 40.0%
! AGGTTGACTCAAAAGGAGAT+GGG + chr4_4:80565873-80565892 Msa0707330:CDS 40.0%
AGGAGATGGGAAGATTGATA+TGG + chr4_4:80565886-80565905 Msa0707330:CDS 40.0%
GGAAGATTGATATGGAAGAG+TGG + chr4_4:80565894-80565913 Msa0707330:CDS 40.0%
! GACTCTGCCATATCTAAAGT+AGG + chr4_4:80565958-80565977 Msa0707330:intron 40.0%
AAATGAATGTTGTGCCTGTC+AGG + chr4_4:80566077-80566096 Msa0707330:intron 40.0%
AATGAATGTTGTGCCTGTCA+GGG + chr4_4:80566078-80566097 Msa0707330:intron 40.0%
TTGTTGCTAATCTTCCACCT+CGG - chr4_4:80566140-80566159 None:intergenic 40.0%
AGCAAGCGTACATATTGAAG+CGG - chr4_4:80566257-80566276 None:intergenic 40.0%
ACAATCCTCCATTCTTGCCT+TGG + chr4_4:80563936-80563955 Msa0707330:CDS 45.0%
TGATGTCTCCAAGGCAAGAA+TGG - chr4_4:80563947-80563966 None:intergenic 45.0%
!! TGATGATGGCTGCATTCACA+AGG + chr4_4:80564412-80564431 Msa0707330:CDS 45.0%
AGCAGAATCTACTTGCAAGC+AGG + chr4_4:80564673-80564692 Msa0707330:CDS 45.0%
GCAGAATCTACTTGCAAGCA+GGG + chr4_4:80564674-80564693 Msa0707330:CDS 45.0%
CTCGCTATGCTCAATGTATC+CGG - chr4_4:80565158-80565177 None:intergenic 45.0%
! ACCCTTTAGGAGATAGAGTG+CGG + chr4_4:80565294-80565313 Msa0707330:intron 45.0%
!!! TTTGGTTTTGGGGGTAGCAT+TGG - chr4_4:80565352-80565371 None:intergenic 45.0%
!!! TCTGTGCAGGTTTGGTTTTG+GGG - chr4_4:80565362-80565381 None:intergenic 45.0%
! ATGGAGGAGGTTGACTCAAA+AGG + chr4_4:80565866-80565885 Msa0707330:CDS 45.0%
! GAGGTTGACTCAAAAGGAGA+TGG + chr4_4:80565872-80565891 Msa0707330:CDS 45.0%
GCCTGTCAGGGATATAACTA+TGG + chr4_4:80566090-80566109 Msa0707330:intron 45.0%
GCCATAGTTATATCCCTGAC+AGG - chr4_4:80566094-80566113 None:intergenic 45.0%
TCGGTGTGCAAAACAAAGCT+GGG - chr4_4:80566121-80566140 None:intergenic 45.0%
ATGTACGCTTGCTTAGGCTT+AGG + chr4_4:80566264-80566283 Msa0707330:three_prime_UTR 45.0%
GTGTCAGGTCCTATTGTGTC+AGG + chr4_4:80563828-80563847 Msa0707330:five_prime_UTR 50.0%
!! AGAGTGCTGCCTGACACAAT+AGG - chr4_4:80563840-80563859 None:intergenic 50.0%
TGTCTCCAAGGCAAGAATGG+AGG - chr4_4:80563944-80563963 None:intergenic 50.0%
CTGTTTGACCTTGGGAAGAC+CGG + chr4_4:80565136-80565155 Msa0707330:CDS 50.0%
CAATGTATCCGGTCTTCCCA+AGG - chr4_4:80565147-80565166 None:intergenic 50.0%
CGGATACATTGAGCATAGCG+AGG + chr4_4:80565156-80565175 Msa0707330:CDS 50.0%
CCCGCACTCTATCTCCTAAA+GGG - chr4_4:80565298-80565317 None:intergenic 50.0%
! CCCTTTAGGAGATAGAGTGC+GGG + chr4_4:80565295-80565314 Msa0707330:intron 50.0%
ACCCGCACTCTATCTCCTAA+AGG - chr4_4:80565299-80565318 None:intergenic 50.0%
TAGGAGATAGAGTGCGGGTT+TGG + chr4_4:80565300-80565319 Msa0707330:intron 50.0%
AGAGTGCGGGTTTGGATTCA+CGG + chr4_4:80565308-80565327 Msa0707330:intron 50.0%
!!! CTGTGCAGGTTTGGTTTTGG+GGG - chr4_4:80565361-80565380 None:intergenic 50.0%
! CTCGGTGTGCAAAACAAAGC+TGG - chr4_4:80566122-80566141 None:intergenic 50.0%
!!! CAGCTTTGTTTTGCACACCG+AGG + chr4_4:80566120-80566139 Msa0707330:CDS 50.0%
!!! CTTTGTTTTGCACACCGAGG+TGG + chr4_4:80566123-80566142 Msa0707330:CDS 50.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 80563714 80566365 80563714 ID=Msa0707330;Name=Msa0707330
chr4_4 mRNA 80563714 80566365 80563714 ID=Msa0707330-mRNA-1;Parent=Msa0707330;Name=Msa0707330-mRNA-1;_AED=0.37;_eAED=0.37;_QI=175|1|1|1|1|1|8|212|210
chr4_4 exon 80563714 80563967 80563714 ID=Msa0707330-mRNA-1:exon:26204;Parent=Msa0707330-mRNA-1
chr4_4 exon 80564351 80564433 80564351 ID=Msa0707330-mRNA-1:exon:26205;Parent=Msa0707330-mRNA-1
chr4_4 exon 80564636 80564695 80564636 ID=Msa0707330-mRNA-1:exon:26206;Parent=Msa0707330-mRNA-1
chr4_4 exon 80564929 80565037 80564929 ID=Msa0707330-mRNA-1:exon:26207;Parent=Msa0707330-mRNA-1
chr4_4 exon 80565125 80565177 80565125 ID=Msa0707330-mRNA-1:exon:26208;Parent=Msa0707330-mRNA-1
chr4_4 exon 80565681 80565761 80565681 ID=Msa0707330-mRNA-1:exon:26209;Parent=Msa0707330-mRNA-1
chr4_4 exon 80565863 80565975 80565863 ID=Msa0707330-mRNA-1:exon:26210;Parent=Msa0707330-mRNA-1
chr4_4 exon 80566099 80566365 80566099 ID=Msa0707330-mRNA-1:exon:26211;Parent=Msa0707330-mRNA-1
chr4_4 five_prime_UTR 80563714 80563888 80563714 ID=Msa0707330-mRNA-1:five_prime_utr;Parent=Msa0707330-mRNA-1
chr4_4 CDS 80563889 80563967 80563889 ID=Msa0707330-mRNA-1:cds;Parent=Msa0707330-mRNA-1
chr4_4 CDS 80564351 80564433 80564351 ID=Msa0707330-mRNA-1:cds;Parent=Msa0707330-mRNA-1
chr4_4 CDS 80564636 80564695 80564636 ID=Msa0707330-mRNA-1:cds;Parent=Msa0707330-mRNA-1
chr4_4 CDS 80564929 80565037 80564929 ID=Msa0707330-mRNA-1:cds;Parent=Msa0707330-mRNA-1
chr4_4 CDS 80565125 80565177 80565125 ID=Msa0707330-mRNA-1:cds;Parent=Msa0707330-mRNA-1
chr4_4 CDS 80565681 80565761 80565681 ID=Msa0707330-mRNA-1:cds;Parent=Msa0707330-mRNA-1
chr4_4 CDS 80565863 80565975 80565863 ID=Msa0707330-mRNA-1:cds;Parent=Msa0707330-mRNA-1
chr4_4 CDS 80566099 80566153 80566099 ID=Msa0707330-mRNA-1:cds;Parent=Msa0707330-mRNA-1
chr4_4 three_prime_UTR 80566154 80566365 80566154 ID=Msa0707330-mRNA-1:three_prime_utr;Parent=Msa0707330-mRNA-1
Gene Sequence

>Msa0707330

ATGAGCTGTTTTTGCTTGATGAAAGGCAAACCAAAAACTAAGCAAGAACAATCCTCCATTCTTGCCTTGGAGACATCATTTACTGTGAATGAGGTTGAGGCTTTACTTGACTTGTTTAAGAAACTAAGTAGTTCAATTATTGATGATGGCTGCATTCACAAGGAGGAGTTCCAACTCGCACTTTTCAGAAATAAGAGCAAGCAGAATCTACTTGCAAGCAGGGTATTTGATATGTTTGATATTAAGCGTAACGGAGTAATTGAATTTGGAGAATTTGTTCGCTCACTAAGTATTTTTCATCCAAAGACATCTGAAGAGAAGAAAATTGAATTTGCATTTAAACTGTTTGACCTTGGGAAGACCGGATACATTGAGCATAGCGAGTTAAAGGAGATGGTCTTGGCTACTTTGACTGAATCAGAAGTTACAGTTTCAGACGATATTGTTGAATCCATTGTGGAAAAGACAATGGAGGAGGTTGACTCAAAAGGAGATGGGAAGATTGATATGGAAGAGTGGAAAGCGTATGCAGCAAAGAATCCTTCTCTTCTTAAGATCATGACTCTGCCATATCTAAAGGATATAACTATGGCATTTCCCAGCTTTGTTTTGCACACCGAGGTGGAAGATTAG

Protein sequence

>Msa0707330

MSCFCLMKGKPKTKQEQSSILALETSFTVNEVEALLDLFKKLSSSIIDDGCIHKEEFQLALFRNKSKQNLLASRVFDMFDIKRNGVIEFGEFVRSLSIFHPKTSEEKKIEFAFKLFDLGKTGYIEHSELKEMVLATLTESEVTVSDDIVESIVEKTMEEVDSKGDGKIDMEEWKAYAAKNPSLLKIMTLPYLKDITMAFPSFVLHTEVED*