Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1256400 | KEH31502.1 | 84.252 | 127 | 14 | 1 | 1 | 121 | 1 | 127 | 3.47e-60 | 209 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0752540 | Msa1256400 | 0.801260 | 9.790273e-49 | -8.615850e-47 |
| Msa1256390 | Msa1256400 | 0.810266 | 1.255741e-50 | -8.615850e-47 |
| Msa1009170 | Msa1256400 | 0.807670 | 4.513862e-50 | -8.615850e-47 |
| Msa1204710 | Msa1256400 | 0.805203 | 1.494869e-49 | -8.615850e-47 |
| Msa1204720 | Msa1256400 | 0.812750 | 3.622579e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1256400 | MtrunA17_Chr4g0053521 | 75.000 | 128 | 25 | 2 | 1 | 121 | 1 | 128 | 4.45e-53 | 179 |
| Msa1256400 | MtrunA17_Chr4g0053521 | 65.079 | 126 | 36 | 4 | 3 | 121 | 560 | 684 | 1.52e-38 | 138 |
| Msa1256400 | MtrunA17_Chr4g0053571 | 68.750 | 128 | 33 | 4 | 1 | 121 | 1 | 128 | 1.83e-45 | 157 |
| Msa1256400 | MtrunA17_Chr4g0053561 | 67.717 | 127 | 34 | 3 | 1 | 121 | 1 | 126 | 3.54e-44 | 154 |
| Msa1256400 | MtrunA17_Chr4g0053611 | 61.832 | 131 | 40 | 4 | 1 | 121 | 1 | 131 | 1.58e-31 | 110 |
| Msa1256400 | MtrunA17_Chr6g0468691 | 44.231 | 104 | 45 | 4 | 31 | 123 | 29 | 130 | 1.96e-12 | 63.5 |
| Msa1256400 | MtrunA17_Chr1g0202711 | 41.000 | 100 | 47 | 6 | 31 | 120 | 47 | 144 | 4.02e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 21 sgRNAs with CRISPR-Local
Find 268 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGATGATTGATTTGTTTCTA+TGG | 0.284823 | 8_2:+56339537 | None:intergenic |
| AAATTCAACGTTTCTGTTCC+CGG | 0.339246 | 8_2:-56339376 | Msa1256400:intron |
| CGTACCATGTAAGTATTGTT+TGG | 0.371500 | 8_2:+56339445 | None:intergenic |
| GTGAAGAGAATGAAAAGAAA+TGG | 0.389396 | 8_2:+56339419 | None:intergenic |
| AACGGAAAATCCTTGCAGTT+TGG | 0.414496 | 8_2:+56339497 | None:intergenic |
| CATGTAAGTATTGTTTGGTT+TGG | 0.416707 | 8_2:+56339450 | None:intergenic |
| AGTGAATTTGTAGGAAGATT+CGG | 0.424805 | 8_2:+56339474 | None:intergenic |
| TTTGCAGTGGAAAGGTTAGT+TGG | 0.435305 | 8_2:+56339397 | None:intergenic |
| TTGTTCATTGTATCCGATAG+AGG | 0.450009 | 8_2:+56339672 | None:intergenic |
| CAAACCAAACAATACTTACA+TGG | 0.506599 | 8_2:-56339449 | Msa1256400:CDS |
| TGGTTTGGTAGTGAATTTGT+AGG | 0.512385 | 8_2:+56339465 | None:intergenic |
| CAAGGTTACTTCATCAGTTG+TGG | 0.512747 | 8_2:-56339652 | Msa1256400:CDS |
| TCATTATACTTCCCCTCTAT+CGG | 0.518480 | 8_2:-56339685 | Msa1256400:CDS |
| AATGCAAATGATGATGTTTG+AGG | 0.529388 | 8_2:+56339247 | None:intergenic |
| TGTTCATTGTATCCGATAGA+GGG | 0.542419 | 8_2:+56339673 | None:intergenic |
| ATCCTTGCAGTTTGGTAGAG+AGG | 0.543085 | 8_2:+56339505 | None:intergenic |
| GCAGTTTGGTAGAGAGGTGA+AGG | 0.550299 | 8_2:+56339511 | None:intergenic |
| GTTCATTGTATCCGATAGAG+GGG | 0.640728 | 8_2:+56339674 | None:intergenic |
| CACCTCTCTACCAAACTGCA+AGG | 0.645797 | 8_2:-56339507 | Msa1256400:CDS |
| ATTTGTAGGAAGATTCGGAA+CGG | 0.658139 | 8_2:+56339479 | None:intergenic |
| TCTATCGGATACAATGAACA+AGG | 0.689755 | 8_2:-56339670 | Msa1256400:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAATTTTTATTTAATATT+TGG | + | chr8_2:56342592-56342611 | None:intergenic | 0.0% |
| !! | AATATTAAATAAAAATTAAA+AGG | - | chr8_2:56342592-56342611 | Msa1256400:intron | 0.0% |
| !! | AAAAAATTATTAATCAATCA+TGG | + | chr8_2:56339677-56339696 | None:intergenic | 10.0% |
| !!! | AGATTAATTTTTATTTTTGT+AGG | - | chr8_2:56340609-56340628 | Msa1256400:intron | 10.0% |
| !!! | AGATTTTAAATAAATAATAC+TGG | + | chr8_2:56341623-56341642 | None:intergenic | 10.0% |
| !! | TAATCATATATACTAGTATA+TGG | + | chr8_2:56339502-56339521 | None:intergenic | 15.0% |
| !! | TTGGATTATTAATTTAACAT+TGG | - | chr8_2:56339569-56339588 | Msa1256400:CDS | 15.0% |
| !! | TCTACATTATAATTTAGATT+AGG | - | chr8_2:56340551-56340570 | Msa1256400:intron | 15.0% |
| !! | TTATAATTTAGATTAGGTTT+AGG | - | chr8_2:56340557-56340576 | Msa1256400:intron | 15.0% |
| !! | TAAGTAAAATATCAGATATT+AGG | - | chr8_2:56340667-56340686 | Msa1256400:intron | 15.0% |
| !! | AAGTAAAATATCAGATATTA+GGG | - | chr8_2:56340668-56340687 | Msa1256400:intron | 15.0% |
| !!! | GAATAATAGACATTTTTTTA+AGG | + | chr8_2:56340976-56340995 | None:intergenic | 15.0% |
| !!! | CATAATAGACATTTTTTTAA+AGG | + | chr8_2:56340998-56341017 | None:intergenic | 15.0% |
| !!! | AAAGTTTTGAGTTTTAAATT+TGG | - | chr8_2:56342884-56342903 | Msa1256400:intron | 15.0% |
| !! | AACTAAGTATGAAAAATACA+AGG | + | chr8_2:56339337-56339356 | None:intergenic | 20.0% |
| !! | TATTGAAAAATAGGATAGAA+AGG | + | chr8_2:56339783-56339802 | None:intergenic | 20.0% |
| !! | ATAAAACAGAATTGCAATAA+AGG | + | chr8_2:56339939-56339958 | None:intergenic | 20.0% |
| !! | AAAAAATTAATTCATGCAAG+TGG | - | chr8_2:56340064-56340083 | Msa1256400:intron | 20.0% |
| !! | TTGCATATAAAGAAAATTCA+AGG | - | chr8_2:56340110-56340129 | Msa1256400:intron | 20.0% |
| !! | TTTAATACACATACAAACAA+AGG | + | chr8_2:56340306-56340325 | None:intergenic | 20.0% |
| !! | ACAAGTTAGTAGTATTAATT+AGG | - | chr8_2:56340347-56340366 | Msa1256400:intron | 20.0% |
| !! | CAAGTTAGTAGTATTAATTA+GGG | - | chr8_2:56340348-56340367 | Msa1256400:intron | 20.0% |
| !! | AAGTTAGTAGTATTAATTAG+GGG | - | chr8_2:56340349-56340368 | Msa1256400:intron | 20.0% |
| !! | GGACAAAAATAAAATCAAAT+GGG | - | chr8_2:56340431-56340450 | Msa1256400:intron | 20.0% |
| !! | ATTATAATGTAGATTCATGT+CGG | + | chr8_2:56340544-56340563 | None:intergenic | 20.0% |
| !! | ACATATTTAACTATAAAGTC+AGG | - | chr8_2:56340633-56340652 | Msa1256400:intron | 20.0% |
| !! | ATTAGGGTTTAATACTATAT+TGG | - | chr8_2:56340684-56340703 | Msa1256400:intron | 20.0% |
| !!! | TTTTTTCATGTTGTTAATAC+CGG | + | chr8_2:56341169-56341188 | None:intergenic | 20.0% |
| !! | ATTACTACTGTTATCATATT+AGG | - | chr8_2:56341354-56341373 | Msa1256400:intron | 20.0% |
| !!! | CAATTTACTAACTTTTCTTT+AGG | - | chr8_2:56341400-56341419 | Msa1256400:intron | 20.0% |
| !!! | CTTTTTGAAAAGATCAAATT+TGG | - | chr8_2:56341725-56341744 | Msa1256400:intron | 20.0% |
| !!! | ATTTGGACTTTAAATTTTGT+TGG | - | chr8_2:56341742-56341761 | Msa1256400:intron | 20.0% |
| !! | AGACAAAATTTAATCGATAA+TGG | + | chr8_2:56341827-56341846 | None:intergenic | 20.0% |
| !! | AATGATTTAAACCAATAAGA+GGG | + | chr8_2:56341912-56341931 | None:intergenic | 20.0% |
| !!! | AAAAAGTTGTGTCATTATTT+AGG | + | chr8_2:56342133-56342152 | None:intergenic | 20.0% |
| !!! | TTATCGATAAAAGACTATTT+TGG | + | chr8_2:56342182-56342201 | None:intergenic | 20.0% |
| !! | ACTTATTTATTTAAATGCTG+CGG | + | chr8_2:56342504-56342523 | None:intergenic | 20.0% |
| !! | ATAAATAAGTTATTAGCACA+AGG | - | chr8_2:56342514-56342533 | Msa1256400:intron | 20.0% |
| !! | AGACTTTATCTTTCAAAAAA+AGG | + | chr8_2:56342687-56342706 | None:intergenic | 20.0% |
| !! | GAAAGTAACAAAGTTTATAT+AGG | - | chr8_2:56343205-56343224 | Msa1256400:intron | 20.0% |
| ! | ATGAAAAATACAAGGAAACA+AGG | + | chr8_2:56339329-56339348 | None:intergenic | 25.0% |
| ! | TCATACTTAGTTATAGTTGT+TGG | - | chr8_2:56339345-56339364 | Msa1256400:intron | 25.0% |
| ! | TGATGATTCCAATTAACTAT+TGG | - | chr8_2:56339407-56339426 | Msa1256400:CDS | 25.0% |
| ! | CCTAATTACCAATAGTTAAT+TGG | + | chr8_2:56339418-56339437 | None:intergenic | 25.0% |
| !! | CCAATTAACTATTGGTAATT+AGG | - | chr8_2:56339415-56339434 | Msa1256400:CDS | 25.0% |
| ! | TTGTACAATATATTCTACAC+TGG | - | chr8_2:56339467-56339486 | Msa1256400:CDS | 25.0% |
| !! | CATTCTGGTTATTGAAAAAT+AGG | + | chr8_2:56339792-56339811 | None:intergenic | 25.0% |
| ! | CAATTCAATGAACACAAATA+GGG | - | chr8_2:56339829-56339848 | Msa1256400:intron | 25.0% |
| ! | AGAAATGTGAAAAATGCAAA+GGG | + | chr8_2:56340191-56340210 | None:intergenic | 25.0% |
| ! | AAGAAATGTGAAAAATGCAA+AGG | + | chr8_2:56340192-56340211 | None:intergenic | 25.0% |
| ! | TTTGACACATTTCTTAAGAA+AGG | - | chr8_2:56340229-56340248 | Msa1256400:intron | 25.0% |
| !! | TATTAATTAGGGGTATGTTT+AGG | - | chr8_2:56340359-56340378 | Msa1256400:intron | 25.0% |
| ! | TGCATCTAGTAATTTGAAAA+TGG | - | chr8_2:56340396-56340415 | Msa1256400:intron | 25.0% |
| ! | GCATCTAGTAATTTGAAAAT+GGG | - | chr8_2:56340397-56340416 | Msa1256400:intron | 25.0% |
| ! | CATCTAGTAATTTGAAAATG+GGG | - | chr8_2:56340398-56340417 | Msa1256400:intron | 25.0% |
| ! | GGGACAAAAATAAAATCAAA+TGG | - | chr8_2:56340430-56340449 | Msa1256400:intron | 25.0% |
| ! | CAAAAATAAAATCAAATGGG+TGG | - | chr8_2:56340434-56340453 | Msa1256400:intron | 25.0% |
| ! | TGGTAATTTATAGTCTGTTA+TGG | - | chr8_2:56340732-56340751 | Msa1256400:intron | 25.0% |
| ! | GGTAATTTATAGTCTGTTAT+GGG | - | chr8_2:56340733-56340752 | Msa1256400:intron | 25.0% |
| ! | ATTCTTATGTAGATCGATAT+GGG | + | chr8_2:56341021-56341040 | None:intergenic | 25.0% |
| ! | TATTCTTATGTAGATCGATA+TGG | + | chr8_2:56341022-56341041 | None:intergenic | 25.0% |
| ! | CGATCTACATAAGAATATAT+CGG | - | chr8_2:56341025-56341044 | Msa1256400:intron | 25.0% |
| !! | AGTTAATTGATGTTTTCGTT+TGG | + | chr8_2:56341197-56341216 | None:intergenic | 25.0% |
| ! | ACGAAAACATCAATTAACTA+TGG | - | chr8_2:56341198-56341217 | Msa1256400:intron | 25.0% |
| !!! | TAATGGTGCTATTGTTATAT+TGG | + | chr8_2:56341810-56341829 | None:intergenic | 25.0% |
| ! | CAATGATTTAAACCAATAAG+AGG | + | chr8_2:56341913-56341932 | None:intergenic | 25.0% |
| !!! | TCTAACACTCACTTTTTTAT+TGG | + | chr8_2:56341995-56342014 | None:intergenic | 25.0% |
| !! | TGGAATATAGCATAATTTTG+TGG | + | chr8_2:56342356-56342375 | None:intergenic | 25.0% |
| !! | TTTGGAAGTTGATTTATCAA+TGG | + | chr8_2:56342574-56342593 | None:intergenic | 25.0% |
| ! | AAAAAGGAAGACTTTATCTA+AGG | + | chr8_2:56342671-56342690 | None:intergenic | 25.0% |
| ! | ATCTTTACTCCATTCTTTAT+TGG | - | chr8_2:56342714-56342733 | Msa1256400:intron | 25.0% |
| !! | ACTTAATCCAATTTCAAGTA+GGG | + | chr8_2:56342759-56342778 | None:intergenic | 25.0% |
| !!! | TTTTGCTGAAACTTGTTTTA+GGG | + | chr8_2:56343252-56343271 | None:intergenic | 25.0% |
| !!! | TGATGATTGATTTGTTTCTA+TGG | + | chr8_2:56343278-56343297 | None:intergenic | 25.0% |
| !! | CTGTAATACTCTTTTACTAA+AGG | + | chr8_2:56343508-56343527 | None:intergenic | 25.0% |
| ATACTAGTATATGGCATTGT+TGG | + | chr8_2:56339493-56339512 | None:intergenic | 30.0% | |
| TGGTATGCAAATTACTATGT+TGG | - | chr8_2:56339550-56339569 | Msa1256400:CDS | 30.0% | |
| TAATCAATCATGGTAATCAC+AGG | + | chr8_2:56339667-56339686 | None:intergenic | 30.0% | |
| ! | TAATCAGTTGCCTTTTACAA+AGG | - | chr8_2:56339718-56339737 | Msa1256400:CDS | 30.0% |
| ! | ACTCTCTTTTCCTTTGTAAA+AGG | + | chr8_2:56339731-56339750 | None:intergenic | 30.0% |
| CCTATTTGTGTTCATTGAAT+TGG | + | chr8_2:56339831-56339850 | None:intergenic | 30.0% | |
| CCAATTCAATGAACACAAAT+AGG | - | chr8_2:56339828-56339847 | Msa1256400:intron | 30.0% | |
| AAATGCTATACATCTCGTTT+GGG | - | chr8_2:56339871-56339890 | Msa1256400:intron | 30.0% | |
| CAGAATTGCAATAAAGGTTT+AGG | + | chr8_2:56339933-56339952 | None:intergenic | 30.0% | |
| TTCTTTATATGCAAGAGTCT+CGG | + | chr8_2:56340104-56340123 | None:intergenic | 30.0% | |
| AAATGTGAAAAATGCAAAGG+GGG | + | chr8_2:56340189-56340208 | None:intergenic | 30.0% | |
| GAAATGTGAAAAATGCAAAG+GGG | + | chr8_2:56340190-56340209 | None:intergenic | 30.0% | |
| TTGAAAATGGGGTTACATTT+AGG | - | chr8_2:56340409-56340428 | Msa1256400:intron | 30.0% | |
| TGAAAATGGGGTTACATTTA+GGG | - | chr8_2:56340410-56340429 | Msa1256400:intron | 30.0% | |
| TCAATTTATTCCTAAGGGTT+TGG | + | chr8_2:56340917-56340936 | None:intergenic | 30.0% | |
| AACCCTTAGGAATAAATTGA+CGG | - | chr8_2:56340917-56340936 | Msa1256400:intron | 30.0% | |
| AACCGTCAATTTATTCCTAA+GGG | + | chr8_2:56340922-56340941 | None:intergenic | 30.0% | |
| ! | GACTTTAAATTTTGTTGGCA+AGG | - | chr8_2:56341747-56341766 | Msa1256400:intron | 30.0% |
| ! | TTTAAATTTTGTTGGCAAGG+CGG | - | chr8_2:56341750-56341769 | Msa1256400:intron | 30.0% |
| TTTAATACTCACCCTCTTAT+TGG | - | chr8_2:56341898-56341917 | Msa1256400:intron | 30.0% | |
| TTGATTGTAAAACTGTTCCA+TGG | - | chr8_2:56342055-56342074 | Msa1256400:intron | 30.0% | |
| CTAATAATGCAGCCAAAATA+AGG | + | chr8_2:56342462-56342481 | None:intergenic | 30.0% | |
| AAGAATGGAGTAAAGATAAG+AGG | + | chr8_2:56342711-56342730 | None:intergenic | 30.0% | |
| ! | CACTTAATCCAATTTCAAGT+AGG | + | chr8_2:56342760-56342779 | None:intergenic | 30.0% |
| AGTCACATTATTATGCAGTT+AGG | - | chr8_2:56342781-56342800 | Msa1256400:intron | 30.0% | |
| GATATCCAATCTTGATCAAA+CGG | - | chr8_2:56342906-56342925 | Msa1256400:intron | 30.0% | |
| ATTAGTACGTACAAGTACTA+GGG | + | chr8_2:56342992-56343011 | None:intergenic | 30.0% | |
| AATTAGTACGTACAAGTACT+AGG | + | chr8_2:56342993-56343012 | None:intergenic | 30.0% | |
| !! | CTTTTGCTGAAACTTGTTTT+AGG | + | chr8_2:56343253-56343272 | None:intergenic | 30.0% |
| AGTGAATTTGTAGGAAGATT+CGG | + | chr8_2:56343341-56343360 | None:intergenic | 30.0% | |
| ! | CATGTAAGTATTGTTTGGTT+TGG | + | chr8_2:56343365-56343384 | None:intergenic | 30.0% |
| CAAACCAAACAATACTTACA+TGG | - | chr8_2:56343363-56343382 | Msa1256400:intron | 30.0% | |
| GTGAAGAGAATGAAAAGAAA+TGG | + | chr8_2:56343396-56343415 | None:intergenic | 30.0% | |
| ATTAGTTAACAGAAGGAAAC+CGG | + | chr8_2:56343458-56343477 | None:intergenic | 30.0% | |
| CATCGAAATTAGTTAACAGA+AGG | + | chr8_2:56343465-56343484 | None:intergenic | 30.0% | |
| ! | AATGCAAATGATGATGTTTG+AGG | + | chr8_2:56343568-56343587 | None:intergenic | 30.0% |
| !!! | AGGAGCTGTGTTTTATTTGA+TGG | - | chr8_2:56339285-56339304 | Msa1256400:CDS | 35.0% |
| AAGGAAACAAGGACAAAACA+GGG | + | chr8_2:56339318-56339337 | None:intergenic | 35.0% | |
| TATGTTTCCTTCACCTTCTT+TGG | - | chr8_2:56339520-56339539 | Msa1256400:CDS | 35.0% | |
| ATGTTTCCTTCACCTTCTTT+GGG | - | chr8_2:56339521-56339540 | Msa1256400:CDS | 35.0% | |
| GAATGAATGCAATAGTTGCT+AGG | + | chr8_2:56339761-56339780 | None:intergenic | 35.0% | |
| ! | CTGGTTTGAATTCATCATTC+TGG | + | chr8_2:56339807-56339826 | None:intergenic | 35.0% |
| TTGTGTTCATTGAATTGGAC+TGG | + | chr8_2:56339826-56339845 | None:intergenic | 35.0% | |
| GAAATGCTATACATCTCGTT+TGG | - | chr8_2:56339870-56339889 | Msa1256400:intron | 35.0% | |
| AATGTGAAAAATGCAAAGGG+GGG | + | chr8_2:56340188-56340207 | None:intergenic | 35.0% | |
| TCAAATGGGTGGTTACATTA+AGG | - | chr8_2:56340445-56340464 | Msa1256400:intron | 35.0% | |
| CAAATGGGTGGTTACATTAA+GGG | - | chr8_2:56340446-56340465 | Msa1256400:intron | 35.0% | |
| CTCTAATGAAGGTGAGATAT+TGG | + | chr8_2:56340501-56340520 | None:intergenic | 35.0% | |
| CAATATCTCACCTTCATTAG+AGG | - | chr8_2:56340499-56340518 | Msa1256400:intron | 35.0% | |
| ATTATTCCCACCTCTAATGA+AGG | + | chr8_2:56340512-56340531 | None:intergenic | 35.0% | |
| TTTATAGTCTGTTATGGGCT+TGG | - | chr8_2:56340738-56340757 | Msa1256400:intron | 35.0% | |
| GAACCGTCAATTTATTCCTA+AGG | + | chr8_2:56340923-56340942 | None:intergenic | 35.0% | |
| ! | TAGACGACGTTTTTATTCCT+GGG | - | chr8_2:56341277-56341296 | Msa1256400:intron | 35.0% |
| AATTTGAGTGAGTTTGACGA+TGG | + | chr8_2:56341530-56341549 | None:intergenic | 35.0% | |
| ATTGAACCCACACAAAATAG+TGG | - | chr8_2:56341951-56341970 | Msa1256400:intron | 35.0% | |
| TTGAACCCACACAAAATAGT+GGG | - | chr8_2:56341952-56341971 | Msa1256400:intron | 35.0% | |
| ! | TATGTCCCACTATTTTGTGT+GGG | + | chr8_2:56341960-56341979 | None:intergenic | 35.0% |
| AAATGCACCCAAAGAAGAAT+CGG | - | chr8_2:56342315-56342334 | Msa1256400:intron | 35.0% | |
| !! | TCAATTGCCGATTCTTCTTT+GGG | + | chr8_2:56342325-56342344 | None:intergenic | 35.0% |
| !! | TTCAATTGCCGATTCTTCTT+TGG | + | chr8_2:56342326-56342345 | None:intergenic | 35.0% |
| GAAGAATCGGCAATTGAATT+TGG | - | chr8_2:56342328-56342347 | Msa1256400:intron | 35.0% | |
| CCTGACGTTCTTTCTTATAA+TGG | + | chr8_2:56342376-56342395 | None:intergenic | 35.0% | |
| CCATTATAAGAAAGAACGTC+AGG | - | chr8_2:56342373-56342392 | Msa1256400:intron | 35.0% | |
| TAGAGTCTAAATATCTCTCC+CGG | + | chr8_2:56342431-56342450 | None:intergenic | 35.0% | |
| !!! | TCTACTCCAATGCCTTATTT+TGG | - | chr8_2:56342447-56342466 | Msa1256400:intron | 35.0% |
| CACAAGGAAGAAACAAAGAA+AGG | - | chr8_2:56342530-56342549 | Msa1256400:intron | 35.0% | |
| GAAGGAGAACCAATAAAGAA+TGG | + | chr8_2:56342726-56342745 | None:intergenic | 35.0% | |
| ! | AATCCAATTTCAAGTAGGGA+GGG | + | chr8_2:56342755-56342774 | None:intergenic | 35.0% |
| ! | TAATCCAATTTCAAGTAGGG+AGG | + | chr8_2:56342756-56342775 | None:intergenic | 35.0% |
| ! | ACATAATTTTCCTCTCCCAA+TGG | - | chr8_2:56343057-56343076 | Msa1256400:intron | 35.0% |
| !!! | TAGAGTTTTGAACTGCCATT+GGG | + | chr8_2:56343075-56343094 | None:intergenic | 35.0% |
| !!! | ATAGAGTTTTGAACTGCCAT+TGG | + | chr8_2:56343076-56343095 | None:intergenic | 35.0% |
| TCATTATACTTCCCCTCTAT+CGG | - | chr8_2:56343127-56343146 | Msa1256400:intron | 35.0% | |
| TGTTCATTGTATCCGATAGA+GGG | + | chr8_2:56343142-56343161 | None:intergenic | 35.0% | |
| TTGTTCATTGTATCCGATAG+AGG | + | chr8_2:56343143-56343162 | None:intergenic | 35.0% | |
| TCTATCGGATACAATGAACA+AGG | - | chr8_2:56343142-56343161 | Msa1256400:intron | 35.0% | |
| ATTTGTAGGAAGATTCGGAA+CGG | + | chr8_2:56343336-56343355 | None:intergenic | 35.0% | |
| !! | TGGTTTGGTAGTGAATTTGT+AGG | + | chr8_2:56343350-56343369 | None:intergenic | 35.0% |
| ! | CGTACCATGTAAGTATTGTT+TGG | + | chr8_2:56343370-56343389 | None:intergenic | 35.0% |
| ! | AGAAACGTTGAATTTTGCAG+TGG | + | chr8_2:56343431-56343450 | None:intergenic | 35.0% |
| AAATTCAACGTTTCTGTTCC+CGG | - | chr8_2:56343436-56343455 | Msa1256400:intron | 35.0% | |
| TTAGTTAACAGAAGGAAACC+GGG | + | chr8_2:56343457-56343476 | None:intergenic | 35.0% | |
| ! | TTTTACTAAAGGAGAGTTGG+TGG | + | chr8_2:56343497-56343516 | None:intergenic | 35.0% |
| ! | CTCTTTTACTAAAGGAGAGT+TGG | + | chr8_2:56343500-56343519 | None:intergenic | 35.0% |
| !! | TGAGTTGATCACTCTCTTCA+AGG | + | chr8_2:56339245-56339264 | None:intergenic | 40.0% |
| CAAGGAAACAAGGACAAAAC+AGG | + | chr8_2:56339319-56339338 | None:intergenic | 40.0% | |
| ATACCACTGATACCCAAAGA+AGG | + | chr8_2:56339536-56339555 | None:intergenic | 40.0% | |
| ATGGTAATCACAGGAAACAG+TGG | + | chr8_2:56339658-56339677 | None:intergenic | 40.0% | |
| ACAAAGGAAAAGAGAGTCTG+TGG | - | chr8_2:56339734-56339753 | Msa1256400:intron | 40.0% | |
| CAAAGGAAAAGAGAGTCTGT+GGG | - | chr8_2:56339735-56339754 | Msa1256400:intron | 40.0% | |
| ACTAACGCAAGTCGCAATTA+TGG | - | chr8_2:56340006-56340025 | Msa1256400:intron | 40.0% | |
| TAATTCATGCAAGTGGTGAG+AGG | - | chr8_2:56340071-56340090 | Msa1256400:intron | 40.0% | |
| TAGAATGTATGAGACACACG+AGG | + | chr8_2:56340143-56340162 | None:intergenic | 40.0% | |
| TATCTCACCTTCATTAGAGG+TGG | - | chr8_2:56340502-56340521 | Msa1256400:intron | 40.0% | |
| ATCTCACCTTCATTAGAGGT+GGG | - | chr8_2:56340503-56340522 | Msa1256400:intron | 40.0% | |
| TGACTTAAGTCCCAAGCAAT+GGG | - | chr8_2:56340768-56340787 | Msa1256400:intron | 40.0% | |
| CTCAAAAATCCCCATTGCTT+GGG | + | chr8_2:56340781-56340800 | None:intergenic | 40.0% | |
| ACTCAAAAATCCCCATTGCT+TGG | + | chr8_2:56340782-56340801 | None:intergenic | 40.0% | |
| !! | GTCTTTTTATCGAGCTCTAG+AGG | - | chr8_2:56340800-56340819 | Msa1256400:intron | 40.0% |
| GAATATATCGGCCATCATCA+AGG | - | chr8_2:56341037-56341056 | Msa1256400:intron | 40.0% | |
| AGCAACTTCATCCTTGATGA+TGG | + | chr8_2:56341051-56341070 | None:intergenic | 40.0% | |
| GCTAGATGATGTATGTTGGT+TGG | + | chr8_2:56341138-56341157 | None:intergenic | 40.0% | |
| ACCAACATACATCATCTAGC+TGG | - | chr8_2:56341138-56341157 | Msa1256400:intron | 40.0% | |
| ACCAGCTAGATGATGTATGT+TGG | + | chr8_2:56341142-56341161 | None:intergenic | 40.0% | |
| CAGGAATAAAAACGTCGTCT+AGG | + | chr8_2:56341278-56341297 | None:intergenic | 40.0% | |
| ! | CTAGACGACGTTTTTATTCC+TGG | - | chr8_2:56341276-56341295 | Msa1256400:intron | 40.0% |
| ATTATTCGTTACTACAGCCC+AGG | + | chr8_2:56341297-56341316 | None:intergenic | 40.0% | |
| ! | GTATGTCCCACTATTTTGTG+TGG | + | chr8_2:56341961-56341980 | None:intergenic | 40.0% |
| CATGGACAACACAAACTAGT+GGG | - | chr8_2:56342073-56342092 | Msa1256400:intron | 40.0% | |
| CAGGACAAATCATACCACTT+TGG | - | chr8_2:56342392-56342411 | Msa1256400:intron | 40.0% | |
| GTGCATGGAAATTTCCAAAG+TGG | + | chr8_2:56342409-56342428 | None:intergenic | 40.0% | |
| ! | CTTTGGAAATTTCCATGCAC+CGG | - | chr8_2:56342409-56342428 | Msa1256400:intron | 40.0% |
| TTTGGAAATTTCCATGCACC+GGG | - | chr8_2:56342410-56342429 | Msa1256400:intron | 40.0% | |
| ATGCAGCCAAAATAAGGCAT+TGG | + | chr8_2:56342456-56342475 | None:intergenic | 40.0% | |
| GCTGCGGAAAATGAATTAAG+AGG | + | chr8_2:56342488-56342507 | None:intergenic | 40.0% | |
| CAAAGAACCACAGTTCACAT+TGG | - | chr8_2:56342641-56342660 | Msa1256400:intron | 40.0% | |
| ATTATGCAGTTAGGTGCAGT+CGG | - | chr8_2:56342790-56342809 | Msa1256400:intron | 40.0% | |
| ATAAAGATTGGACGGTTCTG+AGG | + | chr8_2:56342818-56342837 | None:intergenic | 40.0% | |
| CAGAACCGTCCAATCTTTAT+CGG | - | chr8_2:56342818-56342837 | Msa1256400:intron | 40.0% | |
| TTGAACCGTCCGATAAAGAT+TGG | + | chr8_2:56342830-56342849 | None:intergenic | 40.0% | |
| ! | GAGCTTATCGACTATATGAC+TGG | - | chr8_2:56342933-56342952 | Msa1256400:intron | 40.0% |
| GTTCATTGTATCCGATAGAG+GGG | + | chr8_2:56343141-56343160 | None:intergenic | 40.0% | |
| CAAGGTTACTTCATCAGTTG+TGG | - | chr8_2:56343160-56343179 | Msa1256400:intron | 40.0% | |
| AACGGAAAATCCTTGCAGTT+TGG | + | chr8_2:56343318-56343337 | None:intergenic | 40.0% | |
| TTTGCAGTGGAAAGGTTAGT+TGG | + | chr8_2:56343418-56343437 | None:intergenic | 40.0% | |
| ! | CGTTGAATTTTGCAGTGGAA+AGG | + | chr8_2:56343426-56343445 | None:intergenic | 40.0% |
| TCACCAGTGTCTCAAGTAAG+TGG | - | chr8_2:56339262-56339281 | Msa1256400:CDS | 45.0% | |
| CTGATACCCAAAGAAGGTGA+AGG | + | chr8_2:56339530-56339549 | None:intergenic | 45.0% | |
| TCACCTTCTTTGGGTATCAG+TGG | - | chr8_2:56339530-56339549 | Msa1256400:CDS | 45.0% | |
| CATCACCATTTCCTACTTGC+AGG | - | chr8_2:56339963-56339982 | Msa1256400:intron | 45.0% | |
| AACTTTGCTCACCTGCAAGT+AGG | + | chr8_2:56339977-56339996 | None:intergenic | 45.0% | |
| ATGTATGAGACACACGAGGT+AGG | + | chr8_2:56340139-56340158 | None:intergenic | 45.0% | |
| GCAAAGGGGGGTTACATTAA+GGG | + | chr8_2:56340176-56340195 | None:intergenic | 45.0% | |
| TGCAAAGGGGGGTTACATTA+AGG | + | chr8_2:56340177-56340196 | None:intergenic | 45.0% | |
| TGGGTGGTTACATTAAGGGA+CGG | - | chr8_2:56340450-56340469 | Msa1256400:intron | 45.0% | |
| TGGTTACATTAAGGGACGGA+GGG | - | chr8_2:56340454-56340473 | Msa1256400:intron | 45.0% | |
| ATGCCTTGAGAGAGTTCTCA+AGG | - | chr8_2:56340709-56340728 | Msa1256400:intron | 45.0% | |
| GTGACTTAAGTCCCAAGCAA+TGG | - | chr8_2:56340767-56340786 | Msa1256400:intron | 45.0% | |
| GACTTAAGTCCCAAGCAATG+GGG | - | chr8_2:56340769-56340788 | Msa1256400:intron | 45.0% | |
| ! | AGGCTTCTAGAAGCTGATTG+AGG | - | chr8_2:56340820-56340839 | Msa1256400:intron | 45.0% |
| ! | CTTCTAGAAGCTGATTGAGG+CGG | - | chr8_2:56340823-56340842 | Msa1256400:intron | 45.0% |
| !! | GTATGTTGGTTGGTAGTGAG+AGG | + | chr8_2:56341128-56341147 | None:intergenic | 45.0% |
| ! | CCACTAGTTTGTGTTGTCCA+TGG | + | chr8_2:56342075-56342094 | None:intergenic | 45.0% |
| CCATGGACAACACAAACTAG+TGG | - | chr8_2:56342072-56342091 | Msa1256400:intron | 45.0% | |
| TAAATATCTCTCCCGGTGCA+TGG | + | chr8_2:56342424-56342443 | None:intergenic | 45.0% | |
| AGGAGAACCAATGTGAACTG+TGG | + | chr8_2:56342651-56342670 | None:intergenic | 45.0% | |
| TCTCCCTCCCTACTTGAAAT+TGG | - | chr8_2:56342749-56342768 | Msa1256400:intron | 45.0% | |
| ACCGTCCAATCTTTATCGGA+CGG | - | chr8_2:56342822-56342841 | Msa1256400:intron | 45.0% | |
| ACCGTCCGATAAAGATTGGA+CGG | + | chr8_2:56342826-56342845 | None:intergenic | 45.0% | |
| CGAGACCGTTTGATCAAGAT+TGG | + | chr8_2:56342914-56342933 | None:intergenic | 45.0% | |
| ACAAGTACTAGGGAGTGAGT+GGG | + | chr8_2:56342982-56343001 | None:intergenic | 45.0% | |
| TACAAGTACTAGGGAGTGAG+TGG | + | chr8_2:56342983-56343002 | None:intergenic | 45.0% | |
| ! | TTTTGAACTGCCATTGGGAG+AGG | + | chr8_2:56343070-56343089 | None:intergenic | 45.0% |
| ATCCTTGCAGTTTGGTAGAG+AGG | + | chr8_2:56343310-56343329 | None:intergenic | 45.0% | |
| !! | AAAAAAATAAAAATTAATGT+AGG | + | chr8_2:56341462-56341481 | None:intergenic | 5.0% |
| CCTCCACTTACTTGAGACAC+TGG | + | chr8_2:56339268-56339287 | None:intergenic | 50.0% | |
| CCAGTGTCTCAAGTAAGTGG+AGG | - | chr8_2:56339265-56339284 | Msa1256400:CDS | 50.0% | |
| GCTCACCTGCAAGTAGGAAA+TGG | + | chr8_2:56339971-56339990 | None:intergenic | 50.0% | |
| GGGTTACATTAAGGGACGGA+GGG | + | chr8_2:56340168-56340187 | None:intergenic | 50.0% | |
| AGGGGGGTTACATTAAGGGA+CGG | + | chr8_2:56340172-56340191 | None:intergenic | 50.0% | |
| GTGGTTACATTAAGGGACGG+AGG | - | chr8_2:56340453-56340472 | Msa1256400:intron | 50.0% | |
| CCACCTTGAGAACTCTCTCA+AGG | + | chr8_2:56340715-56340734 | None:intergenic | 50.0% | |
| CCTTGAGAGAGTTCTCAAGG+TGG | - | chr8_2:56340712-56340731 | Msa1256400:intron | 50.0% | |
| !! | CATCATCTAGCTGGTCTTGC+CGG | - | chr8_2:56341147-56341166 | Msa1256400:intron | 50.0% |
| AAGTAGGGAGGGAGAAACGA+AGG | + | chr8_2:56342744-56342763 | None:intergenic | 50.0% | |
| GCAGTTTGGTAGAGAGGTGA+AGG | + | chr8_2:56343304-56343323 | None:intergenic | 50.0% | |
| CACCTCTCTACCAAACTGCA+AGG | - | chr8_2:56343305-56343324 | Msa1256400:intron | 50.0% | |
| GGGGTTACATTAAGGGACGG+AGG | + | chr8_2:56340169-56340188 | None:intergenic | 55.0% | |
| ACCTAGACGCGCTCTTGCAT+GGG | + | chr8_2:56340851-56340870 | None:intergenic | 55.0% | |
| GGGTTTGGAAGCCCTCCATA+AGG | + | chr8_2:56340902-56340921 | None:intergenic | 55.0% | |
| TGGAGGGCTTCCAAACCCTT+AGG | - | chr8_2:56340904-56340923 | Msa1256400:intron | 55.0% | |
| CTTAGCCCAGACAACGTCCT+AGG | - | chr8_2:56341223-56341242 | Msa1256400:intron | 55.0% | |
| CGATGCCTAGGACGTTGTCT+GGG | + | chr8_2:56341231-56341250 | None:intergenic | 55.0% | |
| TCGATGCCTAGGACGTTGTC+TGG | + | chr8_2:56341232-56341251 | None:intergenic | 55.0% | |
| ! | AGACAACGTCCTAGGCATCG+AGG | - | chr8_2:56341231-56341250 | Msa1256400:intron | 55.0% |
| !! | GTCCTAGGCATCGAGGAGAT+CGG | - | chr8_2:56341238-56341257 | Msa1256400:intron | 55.0% |
| TCGAGGAGATCGGAGCAACA+AGG | - | chr8_2:56341248-56341267 | Msa1256400:intron | 55.0% | |
| GACCTAGACGCGCTCTTGCA+TGG | + | chr8_2:56340852-56340871 | None:intergenic | 60.0% | |
| TCTAGGTCCCGTGGGCCTTT+AGG | - | chr8_2:56340864-56340883 | Msa1256400:intron | 60.0% | |
| AGGTCCAGGAGCCCTCCTAA+AGG | + | chr8_2:56340882-56340901 | None:intergenic | 60.0% | |
| AGGAGGGCTCCTGGACCTTA+TGG | - | chr8_2:56340884-56340903 | Msa1256400:intron | 60.0% | |
| AGGGCTCCTGGACCTTATGG+AGG | - | chr8_2:56340887-56340906 | Msa1256400:intron | 60.0% | |
| GGGCTCCTGGACCTTATGGA+GGG | - | chr8_2:56340888-56340907 | Msa1256400:intron | 60.0% | |
| GGAAGCCCTCCATAAGGTCC+AGG | + | chr8_2:56340896-56340915 | None:intergenic | 60.0% | |
| CTCCGATCTCCTCGATGCCT+AGG | + | chr8_2:56341243-56341262 | None:intergenic | 60.0% | |
| ! | GCCCATGCAAGAGCGCGTCT+AGG | - | chr8_2:56340847-56340866 | Msa1256400:intron | 65.0% |
| ! | AAGAGCGCGTCTAGGTCCCG+TGG | - | chr8_2:56340855-56340874 | Msa1256400:intron | 65.0% |
| AGAGCGCGTCTAGGTCCCGT+GGG | - | chr8_2:56340856-56340875 | Msa1256400:intron | 65.0% | |
| AGGTCCCGTGGGCCTTTAGG+AGG | - | chr8_2:56340867-56340886 | Msa1256400:intron | 65.0% | |
| ! | GGTCCCGTGGGCCTTTAGGA+GGG | - | chr8_2:56340868-56340887 | Msa1256400:intron | 65.0% |
| GAGCCCTCCTAAAGGCCCAC+GGG | + | chr8_2:56340874-56340893 | None:intergenic | 65.0% | |
| GGAGCCCTCCTAAAGGCCCA+CGG | + | chr8_2:56340875-56340894 | None:intergenic | 65.0% | |
| ! | TGGGCCTTTAGGAGGGCTCC+TGG | - | chr8_2:56340875-56340894 | Msa1256400:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 56339233 | 56343601 | 56339233 | ID=Msa1256400;Name=Msa1256400 |
| chr8_2 | mRNA | 56339233 | 56343601 | 56339233 | ID=Msa1256400-mRNA-1;Parent=Msa1256400;Name=Msa1256400-mRNA-1;_AED=0.49;_eAED=0.58;_QI=0|0|0|1|0|0|4|0|145 |
| chr8_2 | exon | 56343595 | 56343601 | 56343595 | ID=Msa1256400-mRNA-1:exon:17410;Parent=Msa1256400-mRNA-1 |
| chr8_2 | exon | 56339626 | 56339751 | 56339626 | ID=Msa1256400-mRNA-1:exon:17409;Parent=Msa1256400-mRNA-1 |
| chr8_2 | exon | 56339377 | 56339607 | 56339377 | ID=Msa1256400-mRNA-1:exon:17408;Parent=Msa1256400-mRNA-1 |
| chr8_2 | exon | 56339233 | 56339306 | 56339233 | ID=Msa1256400-mRNA-1:exon:17407;Parent=Msa1256400-mRNA-1 |
| chr8_2 | CDS | 56343595 | 56343601 | 56343595 | ID=Msa1256400-mRNA-1:cds;Parent=Msa1256400-mRNA-1 |
| chr8_2 | CDS | 56339626 | 56339751 | 56339626 | ID=Msa1256400-mRNA-1:cds;Parent=Msa1256400-mRNA-1 |
| chr8_2 | CDS | 56339377 | 56339607 | 56339377 | ID=Msa1256400-mRNA-1:cds;Parent=Msa1256400-mRNA-1 |
| chr8_2 | CDS | 56339233 | 56339306 | 56339233 | ID=Msa1256400-mRNA-1:cds;Parent=Msa1256400-mRNA-1 |
| Gene Sequence |
| Protein sequence |
