Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1257550 | XP_003608715.1 | 99.559 | 227 | 1 | 0 | 1 | 227 | 1 | 227 | 2.38e-163 | 460 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1257550 | sp|Q0VFP5|CWC15_XENTR | 45.957 | 235 | 111 | 5 | 1 | 227 | 1 | 227 | 1.25e-46 | 157 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1257550 | G7JIW9 | 99.559 | 227 | 1 | 0 | 1 | 227 | 1 | 227 | 1.13e-163 | 460 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0371880 | Msa1257550 | 0.833670 | 4.667730e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1257550 | MtrunA17_Chr4g0056191 | 99.559 | 227 | 1 | 0 | 1 | 227 | 1 | 227 | 2.18e-167 | 460 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1257550 | AT3G13200.1 | 73.913 | 230 | 57 | 1 | 1 | 227 | 1 | 230 | 5.46e-105 | 303 |
Find 65 sgRNAs with CRISPR-Local
Find 236 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTATAATTGCTTTCACAAAT+AGG | 0.209078 | 8_2:+58167139 | None:intergenic |
| TTTAGATCCAAATCATAAAT+TGG | 0.236784 | 8_2:+58167201 | None:intergenic |
| TATAATTGCTTTCACAAATA+GGG | 0.271523 | 8_2:+58167140 | None:intergenic |
| TCCTTGTTCGTTTCCACCTT+TGG | 0.301655 | 8_2:+58170289 | None:intergenic |
| ACGTTGTCCAATTTATGATT+TGG | 0.308262 | 8_2:-58167208 | Msa1257550:three_prime_UTR |
| AATGTAATATATTGTGTTGA+TGG | 0.340079 | 8_2:-58167272 | Msa1257550:three_prime_UTR |
| TGTCAGAAACCTGAGTTGTT+TGG | 0.354566 | 8_2:-58167326 | Msa1257550:three_prime_UTR |
| TATAAACCATAAGTTTCTTC+AGG | 0.365747 | 8_2:+58167301 | None:intergenic |
| GGATGACACTGAAGCTTTGC+TGG | 0.370195 | 8_2:-58168624 | Msa1257550:CDS |
| TTGGAGCCTGAAGAAACTTA+TGG | 0.386666 | 8_2:-58167307 | Msa1257550:three_prime_UTR |
| GATGAATCGCTTTGCGAGCT+TGG | 0.402778 | 8_2:+58167413 | None:intergenic |
| CATCTTTCAGTGTCAAAAGA+AGG | 0.407995 | 8_2:-58168007 | Msa1257550:intron |
| TCCTTCCTTTCTTCAATCAC+CGG | 0.423596 | 8_2:-58170387 | Msa1257550:five_prime_UTR |
| TCCATGCTTTGACAGATGAC+AGG | 0.425910 | 8_2:-58169389 | Msa1257550:intron |
| CCTTTGGCCGGTGCCCATGT+TGG | 0.438499 | 8_2:+58170305 | None:intergenic |
| TTGGGTACTTAGCAGGTTAG+AGG | 0.440145 | 8_2:-58167101 | Msa1257550:three_prime_UTR |
| TGCGAGCTTGGTTTCTCCAC+GGG | 0.448028 | 8_2:+58167425 | None:intergenic |
| CTTACTTCATGTATTTGTGC+AGG | 0.449310 | 8_2:+58167355 | None:intergenic |
| AATGTACTTGGGTACTTAGC+AGG | 0.450760 | 8_2:-58167108 | Msa1257550:three_prime_UTR |
| ATGTCGGGTTATTGATCAAA+GGG | 0.461011 | 8_2:+58168027 | None:intergenic |
| TTGACAGATGACAGGGATCA+TGG | 0.467290 | 8_2:-58169381 | Msa1257550:intron |
| TGTTCGTTTCCACCTTTGGC+CGG | 0.474578 | 8_2:+58170293 | None:intergenic |
| ATTTGTGCAGGAATTTCCTA+TGG | 0.474919 | 8_2:+58167367 | None:intergenic |
| AGAGGAAGATCTTAAAGTAA+AGG | 0.493826 | 8_2:-58168072 | Msa1257550:CDS |
| GATTCATCAATGACACCATC+AGG | 0.497137 | 8_2:-58167398 | Msa1257550:CDS |
| CTTCAGGCTCCAAACAACTC+AGG | 0.508450 | 8_2:+58167317 | None:intergenic |
| TTGCGAGCTTGGTTTCTCCA+CGG | 0.514076 | 8_2:+58167424 | None:intergenic |
| TTGAACAAATAAAGAAGGAA+AGG | 0.524193 | 8_2:-58168595 | Msa1257550:CDS |
| CGCTAGACCAACATGGGCAC+CGG | 0.524224 | 8_2:-58170312 | Msa1257550:CDS |
| TGAACAAATAAAGAAGGAAA+GGG | 0.539554 | 8_2:-58168594 | Msa1257550:CDS |
| TGAGCTTGAACAAATAAAGA+AGG | 0.544665 | 8_2:-58168600 | Msa1257550:CDS |
| CCATGCTTTGACAGATGACA+GGG | 0.549331 | 8_2:-58169388 | Msa1257550:intron |
| AATAAAGAAGGAAAGGGCAC+AGG | 0.549972 | 8_2:-58168588 | Msa1257550:CDS |
| GATGACAGGGATCATGGAAG+GGG | 0.552181 | 8_2:-58169375 | Msa1257550:CDS |
| GAAAGACGGGCAGGATACAC+AGG | 0.556936 | 8_2:-58169625 | Msa1257550:CDS |
| CGACCGCCGCTAGACCAACA+TGG | 0.559680 | 8_2:-58170319 | Msa1257550:CDS |
| TCCGGTGATTGAAGAAAGGA+AGG | 0.560695 | 8_2:+58170386 | None:intergenic |
| GATGTCGGGTTATTGATCAA+AGG | 0.561231 | 8_2:+58168026 | None:intergenic |
| ACATGGGCACCGGCCAAAGG+TGG | 0.565377 | 8_2:-58170302 | Msa1257550:CDS |
| GACAGGGATCATGGAAGGGG+CGG | 0.566656 | 8_2:-58169372 | Msa1257550:CDS |
| GGAAGATCTTAAAGTAAAGG+AGG | 0.567127 | 8_2:-58168069 | Msa1257550:CDS |
| CGCACACCACTCTCAAACCT+AGG | 0.567486 | 8_2:-58170214 | Msa1257550:intron |
| CAGATGACAGGGATCATGGA+AGG | 0.571029 | 8_2:-58169377 | Msa1257550:CDS |
| CACAGGATGAGTTAAAGAGA+AGG | 0.579428 | 8_2:-58169608 | Msa1257550:CDS |
| CCATCAGGAATGATTTCCAT+AGG | 0.597909 | 8_2:-58167383 | Msa1257550:CDS |
| GCCAAAGGTGGAAACGAACA+AGG | 0.601298 | 8_2:-58170290 | Msa1257550:CDS |
| AGATGACAGGGATCATGGAA+GGG | 0.602143 | 8_2:-58169376 | Msa1257550:CDS |
| CCTATGGAAATCATTCCTGA+TGG | 0.606526 | 8_2:+58167383 | None:intergenic |
| CAGTGATGACGACGACGATG+AGG | 0.607786 | 8_2:-58168645 | Msa1257550:CDS |
| GTATAGGTGGGATGATGATG+TGG | 0.611321 | 8_2:-58167463 | Msa1257550:intron |
| GACCGCCGCTAGACCAACAT+GGG | 0.618179 | 8_2:-58170318 | Msa1257550:CDS |
| CGGTGCCCATGTTGGTCTAG+CGG | 0.624635 | 8_2:+58170313 | None:intergenic |
| GCAGGAACAACAACAACAAG+AGG | 0.626881 | 8_2:-58168090 | Msa1257550:intron |
| GGCACAGGAAAAGCTGCGCA+AGG | 0.629250 | 8_2:-58168573 | Msa1257550:intron |
| AACTTGATGAACGTGAAAGG+AGG | 0.632430 | 8_2:-58169572 | Msa1257550:CDS |
| AAGTCAACAGTGATGATGAA+AGG | 0.633175 | 8_2:-58169122 | Msa1257550:intron |
| ATGAACTTGATGAACGTGAA+AGG | 0.638541 | 8_2:-58169575 | Msa1257550:CDS |
| CGGCGGTCGTCATCGGATCG+AGG | 0.639598 | 8_2:+58170333 | None:intergenic |
| CAATCACCGGAAAACAAAGT+CGG | 0.651013 | 8_2:-58170374 | Msa1257550:five_prime_UTR |
| AAGGAGGCAGAGCTTATGCG+TGG | 0.661072 | 8_2:-58168053 | Msa1257550:CDS |
| AACCTACCTAGGTTTGAGAG+TGG | 0.662167 | 8_2:+58170208 | None:intergenic |
| ACTTGGTTGGAACACACAAG+TGG | 0.664795 | 8_2:+58167057 | None:intergenic |
| TCATCTGCATCAACACTGCG+TGG | 0.670152 | 8_2:+58169156 | None:intergenic |
| GTTCATCAAGTTCATCACGT+AGG | 0.710689 | 8_2:+58169583 | None:intergenic |
| AAAGGTGGAAACGAACAAGG+AGG | 0.790133 | 8_2:-58170287 | Msa1257550:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTTTTTTTTTTTTTTTTAAG+AGG | + | chr8_2:58168584-58168603 | None:intergenic | 10.0% |
| !!! | ACAATTTACATTTTAAATAA+GGG | + | chr8_2:58169347-58169366 | None:intergenic | 10.0% |
| !!! | CATTTTTTTAAAAATTTGTT+TGG | - | chr8_2:58169978-58169997 | Msa1257550:intron | 10.0% |
| !! | ATCAAAATCAACAAAAAATT+GGG | + | chr8_2:58167287-58167306 | None:intergenic | 15.0% |
| !! | AATCAAAATCAACAAAAAAT+TGG | + | chr8_2:58167288-58167307 | None:intergenic | 15.0% |
| !!! | TTTTGATTTCAATTTTTTGT+TGG | - | chr8_2:58167323-58167342 | Msa1257550:three_prime_UTR | 15.0% |
| !!! | TTTGATTTCAATTTTTTGTT+GGG | - | chr8_2:58167324-58167343 | Msa1257550:three_prime_UTR | 15.0% |
| !! | TAATTCAAATCAAATTTGAA+GGG | + | chr8_2:58167364-58167383 | None:intergenic | 15.0% |
| !! | TCAAAAAATAAATCGTATAA+TGG | - | chr8_2:58167923-58167942 | Msa1257550:intron | 15.0% |
| !!! | GACAATTTACATTTTAAATA+AGG | + | chr8_2:58169348-58169367 | None:intergenic | 15.0% |
| !! | TAATTTGAATCTTGATATTT+AGG | - | chr8_2:58169711-58169730 | Msa1257550:intron | 15.0% |
| !!! | TTTAAAAATTTGTTTGGTAT+AGG | - | chr8_2:58169984-58170003 | Msa1257550:intron | 15.0% |
| !!! | ACACAATATATTACATTTTA+AGG | + | chr8_2:58170188-58170207 | None:intergenic | 15.0% |
| !! | ATAAAAATTACAAATGTACT+TGG | - | chr8_2:58170343-58170362 | Msa1257550:exon | 15.0% |
| !! | TAAAAATTACAAATGTACTT+GGG | - | chr8_2:58170344-58170363 | Msa1257550:exon | 15.0% |
| !! | TCAAAATCAACAAAAAATTG+GGG | + | chr8_2:58167286-58167305 | None:intergenic | 20.0% |
| !!! | TTGATTTCAATTTTTTGTTG+GGG | - | chr8_2:58167325-58167344 | Msa1257550:three_prime_UTR | 20.0% |
| !! | AATTCAAATCAAATTTGAAG+GGG | + | chr8_2:58167363-58167382 | None:intergenic | 20.0% |
| !! | CTAATTCAAATCAAATTTGA+AGG | + | chr8_2:58167365-58167384 | None:intergenic | 20.0% |
| !!! | CTTCAAATTTGATTTGAATT+AGG | - | chr8_2:58167363-58167382 | Msa1257550:CDS | 20.0% |
| !! | ACATTAAGTGATATAATTCA+TGG | + | chr8_2:58167473-58167492 | None:intergenic | 20.0% |
| !!! | TAATACCTTCTAAAAATAGA+TGG | + | chr8_2:58168117-58168136 | None:intergenic | 20.0% |
| !! | GACTGAATATAAATATATCA+TGG | + | chr8_2:58168225-58168244 | None:intergenic | 20.0% |
| !! | TTTATATGCATGTATCATTT+AGG | - | chr8_2:58168408-58168427 | Msa1257550:intron | 20.0% |
| !! | TGCTACTATTTACAAAAATA+AGG | + | chr8_2:58168771-58168790 | None:intergenic | 20.0% |
| !!! | ATTAGATAGTTTTTTGTTGA+AGG | - | chr8_2:58169165-58169184 | Msa1257550:CDS | 20.0% |
| !!! | TTAGATAGTTTTTTGTTGAA+GGG | - | chr8_2:58169166-58169185 | Msa1257550:CDS | 20.0% |
| !!! | ATCTATCTTTTACAGTAAAT+AGG | - | chr8_2:58169778-58169797 | Msa1257550:intron | 20.0% |
| !!! | TATTTTTCAAGCATTATTTG+TGG | - | chr8_2:58169814-58169833 | Msa1257550:intron | 20.0% |
| !! | AATGTAATATATTGTGTTGA+TGG | - | chr8_2:58170191-58170210 | Msa1257550:intron | 20.0% |
| !! | TTTAGATCCAAATCATAAAT+TGG | + | chr8_2:58170265-58170284 | None:intergenic | 20.0% |
| !! | TATAATTGCTTTCACAAATA+GGG | + | chr8_2:58170326-58170345 | None:intergenic | 20.0% |
| !! | TTATAATTGCTTTCACAAAT+AGG | + | chr8_2:58170327-58170346 | None:intergenic | 20.0% |
| !!! | ATCTCTTGAAGAGTATTTTT+GGG | + | chr8_2:58167222-58167241 | None:intergenic | 25.0% |
| !!! | TATCTCTTGAAGAGTATTTT+TGG | + | chr8_2:58167223-58167242 | None:intergenic | 25.0% |
| ! | AAAATCAACAAAAAATTGGG+GGG | + | chr8_2:58167284-58167303 | None:intergenic | 25.0% |
| ! | CAAAATCAACAAAAAATTGG+GGG | + | chr8_2:58167285-58167304 | None:intergenic | 25.0% |
| ! | ATTCAAATCAAATTTGAAGG+GGG | + | chr8_2:58167362-58167381 | None:intergenic | 25.0% |
| ! | CTACTAAGTGATATAATTTG+GGG | + | chr8_2:58167441-58167460 | None:intergenic | 25.0% |
| ! | GCTACTAAGTGATATAATTT+GGG | + | chr8_2:58167442-58167461 | None:intergenic | 25.0% |
| ! | TGCTACTAAGTGATATAATT+TGG | + | chr8_2:58167443-58167462 | None:intergenic | 25.0% |
| !!! | AACCATTTTAGTCATTGAAA+TGG | - | chr8_2:58167675-58167694 | Msa1257550:intron | 25.0% |
| ! | AACCATTTCAATGACTAAAA+TGG | + | chr8_2:58167680-58167699 | None:intergenic | 25.0% |
| ! | CTTAATCATTTAAAAGAGAG+CGG | + | chr8_2:58167729-58167748 | None:intergenic | 25.0% |
| !! | GTTGCATTTATACCTTTTAT+AGG | - | chr8_2:58167816-58167835 | Msa1257550:intron | 25.0% |
| !! | TATACCTTTTATAGGAAAGA+CGG | - | chr8_2:58167824-58167843 | Msa1257550:intron | 25.0% |
| !!! | ATGATGAAAGGTTGATAATT+TGG | - | chr8_2:58168353-58168372 | Msa1257550:intron | 25.0% |
| ! | AATAAAATAACAACCCTTGA+TGG | + | chr8_2:58168444-58168463 | None:intergenic | 25.0% |
| !!! | AATATGCATGCTATTTCTAT+TGG | - | chr8_2:58168506-58168525 | Msa1257550:intron | 25.0% |
| !! | TTAAGCATGTCTTCTTTTAA+GGG | + | chr8_2:58168633-58168652 | None:intergenic | 25.0% |
| !! | ATTAAGCATGTCTTCTTTTA+AGG | + | chr8_2:58168634-58168653 | None:intergenic | 25.0% |
| ! | TTGAACAAATAAAGAAGGAA+AGG | - | chr8_2:58168868-58168887 | Msa1257550:intron | 25.0% |
| ! | TGAACAAATAAAGAAGGAAA+GGG | - | chr8_2:58168869-58168888 | Msa1257550:intron | 25.0% |
| ! | AAGCTAATTAGAATGTACAT+CGG | - | chr8_2:58169063-58169082 | Msa1257550:intron | 25.0% |
| !!! | TAGATAGTTTTTTGTTGAAG+GGG | - | chr8_2:58169167-58169186 | Msa1257550:CDS | 25.0% |
| ! | ACAAGAATTGAAGAATAGAA+TGG | + | chr8_2:58169228-58169247 | None:intergenic | 25.0% |
| ! | ATTCTATTCTTCAATTCTTG+TGG | - | chr8_2:58169227-58169246 | Msa1257550:intron | 25.0% |
| ! | TTCTATTCTTCAATTCTTGT+GGG | - | chr8_2:58169228-58169247 | Msa1257550:intron | 25.0% |
| !! | AAGGTATTTGTTACTAAGAT+AGG | + | chr8_2:58169262-58169281 | None:intergenic | 25.0% |
| !! | TTCAGTTAAATAAGTCCTTT+TGG | + | chr8_2:58169517-58169536 | None:intergenic | 25.0% |
| ! | AGAAAAATGGCAAACTATTA+GGG | + | chr8_2:58169541-58169560 | None:intergenic | 25.0% |
| ! | AAGAAAAATGGCAAACTATT+AGG | + | chr8_2:58169542-58169561 | None:intergenic | 25.0% |
| !!! | ATCATTGACTTTTCAATCAA+CGG | + | chr8_2:58169610-58169629 | None:intergenic | 25.0% |
| !!! | ATTATTGATTTTCCAATCAG+TGG | - | chr8_2:58169685-58169704 | Msa1257550:intron | 25.0% |
| ! | TTCAAATTATAACCACTGAT+TGG | + | chr8_2:58169700-58169719 | None:intergenic | 25.0% |
| ! | TTTGAATCTTGATATTTAGG+TGG | - | chr8_2:58169714-58169733 | Msa1257550:intron | 25.0% |
| !!! | TGGAAGTATTAATATGCAAA+TGG | - | chr8_2:58169873-58169892 | Msa1257550:intron | 25.0% |
| !!! | ACTTAAAACTTTAAAGTGGT+TGG | + | chr8_2:58169911-58169930 | None:intergenic | 25.0% |
| !! | AGTCACTTAAAACTTTAAAG+TGG | + | chr8_2:58169915-58169934 | None:intergenic | 25.0% |
| !! | AAAAATTTGTTTGGTATAGG+TGG | - | chr8_2:58169987-58170006 | Msa1257550:intron | 25.0% |
| !! | AAAATTTGTTTGGTATAGGT+GGG | - | chr8_2:58169988-58170007 | Msa1257550:intron | 25.0% |
| ! | TATAAACCATAAGTTTCTTC+AGG | + | chr8_2:58170165-58170184 | None:intergenic | 25.0% |
| !!! | TTTCAATTTTTTGTTGGGGT+CGG | - | chr8_2:58167329-58167348 | Msa1257550:three_prime_UTR | 30.0% |
| !! | CTAGTTTTTACAAGAACAGA+AGG | - | chr8_2:58167497-58167516 | Msa1257550:intron | 30.0% |
| ! | ATACCTTTTATAGGAAAGAC+GGG | - | chr8_2:58167825-58167844 | Msa1257550:intron | 30.0% |
| AAAATGAAAACTTGTCTCAC+AGG | + | chr8_2:58168021-58168040 | None:intergenic | 30.0% | |
| TCCAATTACTATCCAAGAAA+AGG | - | chr8_2:58168186-58168205 | Msa1257550:intron | 30.0% | |
| ! | TCCTTTTCTTGGATAGTAAT+TGG | + | chr8_2:58168190-58168209 | None:intergenic | 30.0% |
| ! | TTCTTTTCTTCTCCTTTTCT+TGG | + | chr8_2:58168201-58168220 | None:intergenic | 30.0% |
| TGATGAGTCTTTATCTTAAC+AGG | - | chr8_2:58168253-58168272 | Msa1257550:intron | 30.0% | |
| !!! | TTTTTTTTAAGAGGACCACA+AGG | + | chr8_2:58168575-58168594 | None:intergenic | 30.0% |
| AAAAAAAACGTTATCACACG+AGG | - | chr8_2:58168595-58168614 | Msa1257550:CDS | 30.0% | |
| AAAAAAACGTTATCACACGA+GGG | - | chr8_2:58168596-58168615 | Msa1257550:CDS | 30.0% | |
| ! | TAAGCATGTCTTCTTTTAAG+GGG | + | chr8_2:58168632-58168651 | None:intergenic | 30.0% |
| TGCATTTAAGTAATCTTCGT+CGG | - | chr8_2:58168693-58168712 | Msa1257550:intron | 30.0% | |
| TGAGCTTGAACAAATAAAGA+AGG | - | chr8_2:58168863-58168882 | Msa1257550:intron | 30.0% | |
| AGAGTGGTTAGGAATTTATA+AGG | - | chr8_2:58169098-58169117 | Msa1257550:intron | 30.0% | |
| GAGTGGTTAGGAATTTATAA+GGG | - | chr8_2:58169099-58169118 | Msa1257550:intron | 30.0% | |
| ! | TCAGATAAATAGAGTACTTG+AGG | - | chr8_2:58169129-58169148 | Msa1257550:CDS | 30.0% |
| ! | CAGATAAATAGAGTACTTGA+GGG | - | chr8_2:58169130-58169149 | Msa1257550:CDS | 30.0% |
| ACAAAGAGAATTCTCCTAAA+AGG | + | chr8_2:58169197-58169216 | None:intergenic | 30.0% | |
| ACAACAAATTAGCATGCAAA+AGG | + | chr8_2:58169281-58169300 | None:intergenic | 30.0% | |
| AATGTAAATTGTCTTTGTGC+AGG | - | chr8_2:58169355-58169374 | Msa1257550:CDS | 30.0% | |
| AGAGGAAGATCTTAAAGTAA+AGG | - | chr8_2:58169391-58169410 | Msa1257550:intron | 30.0% | |
| !!! | TGCCATTTTTCTTTAAAGTG+AGG | - | chr8_2:58169549-58169568 | Msa1257550:CDS | 30.0% |
| !!! | GCCATTTTTCTTTAAAGTGA+GGG | - | chr8_2:58169550-58169569 | Msa1257550:CDS | 30.0% |
| ! | TCCCTCACTTTAAAGAAAAA+TGG | + | chr8_2:58169554-58169573 | None:intergenic | 30.0% |
| ACGTTGTCCAATTTATGATT+TGG | - | chr8_2:58170255-58170274 | Msa1257550:CDS | 30.0% | |
| !!! | CTTGAAGAGTATTTTTGGGA+AGG | + | chr8_2:58167218-58167237 | None:intergenic | 35.0% |
| !!! | TTCAATTTTTTGTTGGGGTC+GGG | - | chr8_2:58167330-58167349 | Msa1257550:three_prime_UTR | 35.0% |
| ACCCAATGTCATTCGAAATA+AGG | - | chr8_2:58167528-58167547 | Msa1257550:intron | 35.0% | |
| ! | CCCTTATTTCGAATGACATT+GGG | + | chr8_2:58167532-58167551 | None:intergenic | 35.0% |
| CCCAATGTCATTCGAAATAA+GGG | - | chr8_2:58167529-58167548 | Msa1257550:intron | 35.0% | |
| ! | ACCCTTATTTCGAATGACAT+TGG | + | chr8_2:58167533-58167552 | None:intergenic | 35.0% |
| TGTTTACCCTTTGCAATTGA+GGG | + | chr8_2:58167656-58167675 | None:intergenic | 35.0% | |
| TTGTTTACCCTTTGCAATTG+AGG | + | chr8_2:58167657-58167676 | None:intergenic | 35.0% | |
| ATCATTTAAAAGAGAGCGGA+GGG | + | chr8_2:58167725-58167744 | None:intergenic | 35.0% | |
| AATCATTTAAAAGAGAGCGG+AGG | + | chr8_2:58167726-58167745 | None:intergenic | 35.0% | |
| ATGAACTTGATGAACGTGAA+AGG | - | chr8_2:58167888-58167907 | Msa1257550:intron | 35.0% | |
| ! | AAGTCAACAGTGATGATGAA+AGG | - | chr8_2:58168341-58168360 | Msa1257550:intron | 35.0% |
| TAGGATTTGTAGAACCATCA+AGG | - | chr8_2:58168427-58168446 | Msa1257550:intron | 35.0% | |
| AGGATTTGTAGAACCATCAA+GGG | - | chr8_2:58168428-58168447 | Msa1257550:intron | 35.0% | |
| AAAAAACGTTATCACACGAG+GGG | - | chr8_2:58168597-58168616 | Msa1257550:CDS | 35.0% | |
| TGTGAATAGTTAGAGTGGTT+AGG | - | chr8_2:58169087-58169106 | Msa1257550:intron | 35.0% | |
| GGAAGATCTTAAAGTAAAGG+AGG | - | chr8_2:58169394-58169413 | Msa1257550:intron | 35.0% | |
| ATGTCGGGTTATTGATCAAA+GGG | + | chr8_2:58169439-58169458 | None:intergenic | 35.0% | |
| ! | TTTTGACACTGAAAGATGTC+GGG | + | chr8_2:58169454-58169473 | None:intergenic | 35.0% |
| ! | CTTTTGACACTGAAAGATGT+CGG | + | chr8_2:58169455-58169474 | None:intergenic | 35.0% |
| CATCTTTCAGTGTCAAAAGA+AGG | - | chr8_2:58169456-58169475 | Msa1257550:intron | 35.0% | |
| ATATGCAAATGGTCCATAAC+TGG | - | chr8_2:58169884-58169903 | Msa1257550:intron | 35.0% | |
| AGATCATGACAGCAGATTAA+TGG | + | chr8_2:58169958-58169977 | None:intergenic | 35.0% | |
| ATTTGTGCAGGAATTTCCTA+TGG | + | chr8_2:58170099-58170118 | None:intergenic | 35.0% | |
| CTTACTTCATGTATTTGTGC+AGG | + | chr8_2:58170111-58170130 | None:intergenic | 35.0% | |
| TCCTTCCTTTCTTCAATCAC+CGG | - | chr8_2:58167076-58167095 | Msa1257550:three_prime_UTR | 40.0% | |
| ! | GTTTTCCGGTGATTGAAGAA+AGG | + | chr8_2:58167084-58167103 | None:intergenic | 40.0% |
| CAATCACCGGAAAACAAAGT+CGG | - | chr8_2:58167089-58167108 | Msa1257550:three_prime_UTR | 40.0% | |
| !!! | CAAGGAGGTACTCGAATTTT+CGG | - | chr8_2:58167191-58167210 | Msa1257550:three_prime_UTR | 40.0% |
| TCGAATGACATTGGGTAACT+TGG | + | chr8_2:58167524-58167543 | None:intergenic | 40.0% | |
| GCCTATCTGCAAATTTCAAG+CGG | - | chr8_2:58167561-58167580 | Msa1257550:intron | 40.0% | |
| CCTATCTGCAAATTTCAAGC+GGG | - | chr8_2:58167562-58167581 | Msa1257550:intron | 40.0% | |
| TTTACCCTTTGCAATTGAGG+GGG | + | chr8_2:58167654-58167673 | None:intergenic | 40.0% | |
| GTTTACCCTTTGCAATTGAG+GGG | + | chr8_2:58167655-58167674 | None:intergenic | 40.0% | |
| AGCTTTCCATGTTATCACGT+TGG | - | chr8_2:58167776-58167795 | Msa1257550:intron | 40.0% | |
| CATGTTATCACGTTGGTATG+CGG | - | chr8_2:58167783-58167802 | Msa1257550:intron | 40.0% | |
| CACAGGATGAGTTAAAGAGA+AGG | - | chr8_2:58167855-58167874 | Msa1257550:intron | 40.0% | |
| GTTCATCAAGTTCATCACGT+AGG | + | chr8_2:58167883-58167902 | None:intergenic | 40.0% | |
| AACTTGATGAACGTGAAAGG+AGG | - | chr8_2:58167891-58167910 | Msa1257550:intron | 40.0% | |
| GGATTTACTCTTCAACCTTG+TGG | - | chr8_2:58168557-58168576 | Msa1257550:intron | 40.0% | |
| TAAATGCATCCAGAGATGCT+AGG | + | chr8_2:58168681-58168700 | None:intergenic | 40.0% | |
| ! | AATAAAGAAGGAAAGGGCAC+AGG | - | chr8_2:58168875-58168894 | Msa1257550:intron | 40.0% |
| TGCCATTGAACCTCTTTAGA+TGG | - | chr8_2:58168943-58168962 | Msa1257550:intron | 40.0% | |
| GCCATTGAACCTCTTTAGAT+GGG | - | chr8_2:58168944-58168963 | Msa1257550:intron | 40.0% | |
| TCCCATCTAAAGAGGTTCAA+TGG | + | chr8_2:58168948-58168967 | None:intergenic | 40.0% | |
| GTTCAATGTCCCATCTAAAG+AGG | + | chr8_2:58168956-58168975 | None:intergenic | 40.0% | |
| GGACATTGAACTTGAACTTG+TGG | - | chr8_2:58168965-58168984 | Msa1257550:intron | 40.0% | |
| AACACCTCTCTTAGGATAGA+AGG | - | chr8_2:58168992-58169011 | Msa1257550:intron | 40.0% | |
| TCGGTTGTGAATAGTTAGAG+TGG | - | chr8_2:58169082-58169101 | Msa1257550:intron | 40.0% | |
| ! | GTTGAAGGGGAAATCCTTTT+AGG | - | chr8_2:58169180-58169199 | Msa1257550:CDS | 40.0% |
| GATGTCGGGTTATTGATCAA+AGG | + | chr8_2:58169440-58169459 | None:intergenic | 40.0% | |
| GAACTGCTCACTTAACCAAA+AGG | - | chr8_2:58169499-58169518 | Msa1257550:intron | 40.0% | |
| AGTGAGGGAGTCAATTCATT+CGG | - | chr8_2:58169565-58169584 | Msa1257550:CDS | 40.0% | |
| ACAGTAGTGCAATGGTCAAA+TGG | + | chr8_2:58169745-58169764 | None:intergenic | 40.0% | |
| TGCATACAACAGTAGTGCAA+TGG | + | chr8_2:58169753-58169772 | None:intergenic | 40.0% | |
| TTCAAGCATTATTTGTGGCG+TGG | - | chr8_2:58169819-58169838 | Msa1257550:intron | 40.0% | |
| ! | TAAAGTGGTTGGTCCAGTTA+TGG | + | chr8_2:58169900-58169919 | None:intergenic | 40.0% |
| GATTCATCAATGACACCATC+AGG | - | chr8_2:58170065-58170084 | Msa1257550:intron | 40.0% | |
| CCTATGGAAATCATTCCTGA+TGG | + | chr8_2:58170083-58170102 | None:intergenic | 40.0% | |
| CCATCAGGAATGATTTCCAT+AGG | - | chr8_2:58170080-58170099 | Msa1257550:intron | 40.0% | |
| TGTCAGAAACCTGAGTTGTT+TGG | - | chr8_2:58170137-58170156 | Msa1257550:intron | 40.0% | |
| TTGGAGCCTGAAGAAACTTA+TGG | - | chr8_2:58170156-58170175 | Msa1257550:intron | 40.0% | |
| AATGTACTTGGGTACTTAGC+AGG | - | chr8_2:58170355-58170374 | Msa1257550:five_prime_UTR | 40.0% | |
| TCCGGTGATTGAAGAAAGGA+AGG | + | chr8_2:58167080-58167099 | None:intergenic | 45.0% | |
| !!! | CTGTCACCGACTTTGTTTTC+CGG | + | chr8_2:58167098-58167117 | None:intergenic | 45.0% |
| TCCTTGTTCGTTTCCACCTT+TGG | + | chr8_2:58167177-58167196 | None:intergenic | 45.0% | |
| AAAGGTGGAAACGAACAAGG+AGG | - | chr8_2:58167176-58167195 | Msa1257550:three_prime_UTR | 45.0% | |
| AACCTACCTAGGTTTGAGAG+TGG | + | chr8_2:58167258-58167277 | None:intergenic | 45.0% | |
| CCCGCTTGAAATTTGCAGAT+AGG | + | chr8_2:58167565-58167584 | None:intergenic | 45.0% | |
| TGCTTGACCCTTGCAATTTC+AGG | - | chr8_2:58167589-58167608 | Msa1257550:intron | 45.0% | |
| TTGACCCTTGCAATTTCAGG+TGG | - | chr8_2:58167592-58167611 | Msa1257550:intron | 45.0% | |
| ! | TGACCCTTGCAATTTCAGGT+GGG | - | chr8_2:58167593-58167612 | Msa1257550:intron | 45.0% |
| TTCCCCACCTGAAATTGCAA+GGG | + | chr8_2:58167599-58167618 | None:intergenic | 45.0% | |
| ATTCCCCACCTGAAATTGCA+AGG | + | chr8_2:58167600-58167619 | None:intergenic | 45.0% | |
| ! | TGCAATTTCAGGTGGGGAAT+TGG | - | chr8_2:58167600-58167619 | Msa1257550:intron | 45.0% |
| TTACCCTTTGCAATTGAGGG+GGG | + | chr8_2:58167653-58167672 | None:intergenic | 45.0% | |
| CGCATACCAACGTGATAACA+TGG | + | chr8_2:58167785-58167804 | None:intergenic | 45.0% | |
| CTGCCCGTCTTTCCTATAAA+AGG | + | chr8_2:58167831-58167850 | None:intergenic | 45.0% | |
| ! | CTTTTATAGGAAAGACGGGC+AGG | - | chr8_2:58167829-58167848 | Msa1257550:intron | 45.0% |
| TCCATGCTTTGACAGATGAC+AGG | - | chr8_2:58168074-58168093 | Msa1257550:CDS | 45.0% | |
| CCATGCTTTGACAGATGACA+GGG | - | chr8_2:58168075-58168094 | Msa1257550:CDS | 45.0% | |
| TTGACAGATGACAGGGATCA+TGG | - | chr8_2:58168082-58168101 | Msa1257550:CDS | 45.0% | |
| AGATGACAGGGATCATGGAA+GGG | - | chr8_2:58168087-58168106 | Msa1257550:CDS | 45.0% | |
| !!! | GGCGGCCATCTATTTTTAGA+AGG | - | chr8_2:58168109-58168128 | Msa1257550:intron | 45.0% |
| TCTATTGGCCAGTTTCCCAT+AGG | - | chr8_2:58168521-58168540 | Msa1257550:intron | 45.0% | |
| CCAAATGACCTATGGGAAAC+TGG | + | chr8_2:58168532-58168551 | None:intergenic | 45.0% | |
| CCAGTTTCCCATAGGTCATT+TGG | - | chr8_2:58168529-58168548 | Msa1257550:intron | 45.0% | |
| CCTGCAACCAAATGACCTAT+GGG | + | chr8_2:58168539-58168558 | None:intergenic | 45.0% | |
| TCCTGCAACCAAATGACCTA+TGG | + | chr8_2:58168540-58168559 | None:intergenic | 45.0% | |
| ! | TTTTGTGAGCCTAGCATCTC+TGG | - | chr8_2:58168669-58168688 | Msa1257550:intron | 45.0% |
| ACCTCTCTTAGGATAGAAGG+AGG | - | chr8_2:58168995-58169014 | Msa1257550:intron | 45.0% | |
| TCCTCCTTCTATCCTAAGAG+AGG | + | chr8_2:58168999-58169018 | None:intergenic | 45.0% | |
| GCAGGAACAACAACAACAAG+AGG | - | chr8_2:58169373-58169392 | Msa1257550:CDS | 45.0% | |
| GTAGTGCAATGGTCAAATGG+CGG | + | chr8_2:58169742-58169761 | None:intergenic | 45.0% | |
| CTCGAACAGTAGTGCACAAT+TGG | - | chr8_2:58169853-58169872 | Msa1257550:intron | 45.0% | |
| ! | GTATAGGTGGGATGATGATG+TGG | - | chr8_2:58170000-58170019 | Msa1257550:intron | 45.0% |
| GTGTTCAAAAATCAAGCCCG+TGG | - | chr8_2:58170022-58170041 | Msa1257550:intron | 45.0% | |
| TTGGGTACTTAGCAGGTTAG+AGG | - | chr8_2:58170362-58170381 | Msa1257550:five_prime_UTR | 45.0% | |
| TGTTCGTTTCCACCTTTGGC+CGG | + | chr8_2:58167173-58167192 | None:intergenic | 50.0% | |
| GCCAAAGGTGGAAACGAACA+AGG | - | chr8_2:58167173-58167192 | Msa1257550:three_prime_UTR | 50.0% | |
| CACCACTCTCAAACCTAGGT+AGG | - | chr8_2:58167253-58167272 | Msa1257550:three_prime_UTR | 50.0% | |
| TTGGGGGGAAAAACCTACCT+AGG | + | chr8_2:58167269-58167288 | None:intergenic | 50.0% | |
| ! | GACCCTTGCAATTTCAGGTG+GGG | - | chr8_2:58167594-58167613 | Msa1257550:intron | 50.0% |
| GAGAGCGGAGGGTTAGAAAA+GGG | + | chr8_2:58167714-58167733 | None:intergenic | 50.0% | |
| AGAGAGCGGAGGGTTAGAAA+AGG | + | chr8_2:58167715-58167734 | None:intergenic | 50.0% | |
| CCCTGTCATCTGTCAAAGCA+TGG | + | chr8_2:58168078-58168097 | None:intergenic | 50.0% | |
| CAGATGACAGGGATCATGGA+AGG | - | chr8_2:58168086-58168105 | Msa1257550:CDS | 50.0% | |
| GATGACAGGGATCATGGAAG+GGG | - | chr8_2:58168088-58168107 | Msa1257550:CDS | 50.0% | |
| TCATCTGCATCAACACTGCG+TGG | + | chr8_2:58168310-58168329 | None:intergenic | 50.0% | |
| CCCATAGGTCATTTGGTTGC+AGG | - | chr8_2:58168536-58168555 | Msa1257550:intron | 50.0% | |
| GGATGACACTGAAGCTTTGC+TGG | - | chr8_2:58168839-58168858 | Msa1257550:intron | 50.0% | |
| GTGGTCGTAACACCTCTCTT+AGG | - | chr8_2:58168984-58169003 | Msa1257550:intron | 50.0% | |
| TTGCGAGCTTGGTTTCTCCA+CGG | + | chr8_2:58170042-58170061 | None:intergenic | 50.0% | |
| GATGAATCGCTTTGCGAGCT+TGG | + | chr8_2:58170053-58170072 | None:intergenic | 50.0% | |
| CTTCAGGCTCCAAACAACTC+AGG | + | chr8_2:58170149-58170168 | None:intergenic | 50.0% | |
| CGCACACCACTCTCAAACCT+AGG | - | chr8_2:58167249-58167268 | Msa1257550:three_prime_UTR | 55.0% | |
| TTTGCAATTGAGGGGGGTGG+GGG | + | chr8_2:58167647-58167666 | None:intergenic | 55.0% | |
| CTTTGCAATTGAGGGGGGTG+GGG | + | chr8_2:58167648-58167667 | None:intergenic | 55.0% | |
| CCTTTGCAATTGAGGGGGGT+GGG | + | chr8_2:58167649-58167668 | None:intergenic | 55.0% | |
| CCACCCCCCTCAATTGCAAA+GGG | - | chr8_2:58167647-58167666 | Msa1257550:intron | 55.0% | |
| GAAAGACGGGCAGGATACAC+AGG | - | chr8_2:58167838-58167857 | Msa1257550:intron | 55.0% | |
| ! | CAGTGATGACGACGACGATG+AGG | - | chr8_2:58168818-58168837 | Msa1257550:intron | 55.0% |
| AAGGAGGCAGAGCTTATGCG+TGG | - | chr8_2:58169410-58169429 | Msa1257550:intron | 55.0% | |
| TGCGAGCTTGGTTTCTCCAC+GGG | + | chr8_2:58170041-58170060 | None:intergenic | 55.0% | |
| GACCGCCGCTAGACCAACAT+GGG | - | chr8_2:58167145-58167164 | Msa1257550:three_prime_UTR | 60.0% | |
| ! | TGCCCATGTTGGTCTAGCGG+CGG | + | chr8_2:58167150-58167169 | None:intergenic | 60.0% |
| ! | CGGTGCCCATGTTGGTCTAG+CGG | + | chr8_2:58167153-58167172 | None:intergenic | 60.0% |
| CGCTAGACCAACATGGGCAC+CGG | - | chr8_2:58167151-58167170 | Msa1257550:three_prime_UTR | 60.0% | |
| CCCACCCCCCTCAATTGCAA+AGG | - | chr8_2:58167646-58167665 | Msa1257550:intron | 60.0% | |
| CCCTTTGCAATTGAGGGGGG+TGG | + | chr8_2:58167650-58167669 | None:intergenic | 60.0% | |
| GACAGGGATCATGGAAGGGG+CGG | - | chr8_2:58168091-58168110 | Msa1257550:intron | 60.0% | |
| GGCACAGGAAAAGCTGCGCA+AGG | - | chr8_2:58168890-58168909 | Msa1257550:intron | 60.0% | |
| GGTCTAGCGGCGGTCGTCAT+CGG | + | chr8_2:58167140-58167159 | None:intergenic | 65.0% | |
| CGACCGCCGCTAGACCAACA+TGG | - | chr8_2:58167144-58167163 | Msa1257550:three_prime_UTR | 65.0% | |
| CCTTTGGCCGGTGCCCATGT+TGG | + | chr8_2:58167161-58167180 | None:intergenic | 65.0% | |
| !! | CCAACATGGGCACCGGCCAA+AGG | - | chr8_2:58167158-58167177 | Msa1257550:three_prime_UTR | 65.0% |
| !! | ACATGGGCACCGGCCAAAGG+TGG | - | chr8_2:58167161-58167180 | Msa1257550:three_prime_UTR | 65.0% |
| CGGCGGTCGTCATCGGATCG+AGG | + | chr8_2:58167133-58167152 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 58167062 | 58170423 | 58167062 | ID=Msa1257550;Name=Msa1257550 |
| chr8_2 | mRNA | 58167062 | 58170423 | 58167062 | ID=Msa1257550-mRNA-1;Parent=Msa1257550;Name=Msa1257550-mRNA-1;_AED=0.11;_eAED=0.11;_QI=78|1|1|1|1|1|7|294|227 |
| chr8_2 | exon | 58167062 | 58167479 | 58167062 | ID=Msa1257550-mRNA-1:exon:18018;Parent=Msa1257550-mRNA-1 |
| chr8_2 | exon | 58168008 | 58168108 | 58168008 | ID=Msa1257550-mRNA-1:exon:18017;Parent=Msa1257550-mRNA-1 |
| chr8_2 | exon | 58168574 | 58168664 | 58168574 | ID=Msa1257550-mRNA-1:exon:18016;Parent=Msa1257550-mRNA-1 |
| chr8_2 | exon | 58169123 | 58169210 | 58169123 | ID=Msa1257550-mRNA-1:exon:18015;Parent=Msa1257550-mRNA-1 |
| chr8_2 | exon | 58169355 | 58169396 | 58169355 | ID=Msa1257550-mRNA-1:exon:18014;Parent=Msa1257550-mRNA-1 |
| chr8_2 | exon | 58169541 | 58169647 | 58169541 | ID=Msa1257550-mRNA-1:exon:18013;Parent=Msa1257550-mRNA-1 |
| chr8_2 | exon | 58170215 | 58170423 | 58170215 | ID=Msa1257550-mRNA-1:exon:18012;Parent=Msa1257550-mRNA-1 |
| chr8_2 | five_prime_UTR | 58170346 | 58170423 | 58170346 | ID=Msa1257550-mRNA-1:five_prime_utr;Parent=Msa1257550-mRNA-1 |
| chr8_2 | CDS | 58170215 | 58170345 | 58170215 | ID=Msa1257550-mRNA-1:cds;Parent=Msa1257550-mRNA-1 |
| chr8_2 | CDS | 58169541 | 58169647 | 58169541 | ID=Msa1257550-mRNA-1:cds;Parent=Msa1257550-mRNA-1 |
| chr8_2 | CDS | 58169355 | 58169396 | 58169355 | ID=Msa1257550-mRNA-1:cds;Parent=Msa1257550-mRNA-1 |
| chr8_2 | CDS | 58169123 | 58169210 | 58169123 | ID=Msa1257550-mRNA-1:cds;Parent=Msa1257550-mRNA-1 |
| chr8_2 | CDS | 58168574 | 58168664 | 58168574 | ID=Msa1257550-mRNA-1:cds;Parent=Msa1257550-mRNA-1 |
| chr8_2 | CDS | 58168008 | 58168108 | 58168008 | ID=Msa1257550-mRNA-1:cds;Parent=Msa1257550-mRNA-1 |
| chr8_2 | CDS | 58167356 | 58167479 | 58167356 | ID=Msa1257550-mRNA-1:cds;Parent=Msa1257550-mRNA-1 |
| chr8_2 | three_prime_UTR | 58167062 | 58167355 | 58167062 | ID=Msa1257550-mRNA-1:three_prime_utr;Parent=Msa1257550-mRNA-1 |
| Gene Sequence |
| Protein sequence |
