Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0371880 | XP_024635252.1 | 95.779 | 616 | 26 | 0 | 1 | 616 | 1 | 616 | 0.0 | 1233 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0371880 | sp|P36627|BYR3_SCHPO | 35.028 | 177 | 87 | 7 | 147 | 314 | 19 | 176 | 7.88e-20 | 90.9 |
| Msa0371880 | sp|P36627|BYR3_SCHPO | 30.729 | 192 | 94 | 4 | 169 | 355 | 19 | 176 | 1.94e-16 | 80.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0371880 | A0A396IXW8 | 89.123 | 616 | 26 | 1 | 1 | 616 | 1 | 575 | 0.0 | 1128 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0371880 | Msa0599670 | 0.807309 | 5.382173e-50 | -8.615850e-47 |
| Msa0371880 | Msa0693210 | 0.819014 | 1.450907e-52 | -8.615850e-47 |
| Msa0371880 | Msa0699190 | 0.809112 | 2.222895e-50 | -8.615850e-47 |
| Msa0371880 | Msa0766080 | 0.809570 | 1.772532e-50 | -8.615850e-47 |
| Msa0371880 | Msa1065240 | 0.816327 | 5.855187e-52 | -8.615850e-47 |
| Msa0371880 | Msa1257550 | 0.833670 | 4.667730e-56 | -8.615850e-47 |
| Msa0371880 | Msa1462860 | 0.810133 | 1.341125e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0371880 | MtrunA17_Chr3g0119021 | 89.123 | 616 | 26 | 1 | 1 | 616 | 1 | 575 | 0.0 | 1128 |
| Msa0371880 | MtrunA17_Chr5g0439981 | 61.564 | 307 | 111 | 3 | 115 | 419 | 250 | 551 | 9.82e-131 | 397 |
| Msa0371880 | MtrunA17_Chr5g0439981 | 40.367 | 109 | 54 | 4 | 492 | 596 | 532 | 633 | 9.12e-11 | 65.1 |
| Msa0371880 | MtrunA17_Chr3g0080991 | 34.322 | 236 | 108 | 7 | 146 | 352 | 1458 | 1675 | 2.24e-26 | 115 |
| Msa0371880 | MtrunA17_Chr3g0080991 | 29.200 | 250 | 109 | 6 | 146 | 351 | 1985 | 2210 | 3.65e-19 | 92.4 |
| Msa0371880 | MtrunA17_Chr3g0080991 | 28.497 | 193 | 109 | 6 | 187 | 352 | 1985 | 2175 | 7.92e-13 | 72.0 |
| Msa0371880 | MtrunA17_Chr3g0145151 | 28.571 | 252 | 114 | 11 | 136 | 351 | 34 | 255 | 8.82e-12 | 66.2 |
| Msa0371880 | MtrunA17_Chr1g0203191 | 31.148 | 122 | 71 | 3 | 169 | 281 | 69 | 186 | 2.75e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0371880 | AT3G43590.1 | 43.405 | 417 | 186 | 10 | 45 | 424 | 44 | 447 | 7.10e-100 | 315 |
| Msa0371880 | AT5G36240.1 | 46.535 | 101 | 50 | 1 | 216 | 316 | 27 | 123 | 5.61e-24 | 102 |
| Msa0371880 | AT3G43490.1 | 36.646 | 161 | 88 | 5 | 38 | 184 | 23 | 183 | 1.51e-20 | 92.0 |
| Msa0371880 | AT4G36020.1 | 25.714 | 315 | 160 | 10 | 67 | 352 | 27 | 296 | 2.67e-17 | 83.6 |
| Msa0371880 | AT4G36020.3 | 25.714 | 315 | 160 | 10 | 67 | 352 | 27 | 296 | 2.67e-17 | 83.6 |
| Msa0371880 | AT2G17870.1 | 26.298 | 289 | 154 | 9 | 67 | 312 | 27 | 299 | 1.08e-14 | 75.9 |
| Msa0371880 | AT1G75560.2 | 31.373 | 204 | 97 | 6 | 134 | 313 | 63 | 247 | 4.54e-14 | 73.2 |
| Msa0371880 | AT1G75560.1 | 31.373 | 204 | 97 | 6 | 134 | 313 | 63 | 247 | 4.54e-14 | 73.2 |
| Msa0371880 | AT4G36020.2 | 29.000 | 200 | 87 | 6 | 169 | 352 | 102 | 262 | 3.72e-13 | 70.5 |
| Msa0371880 | AT4G36020.2 | 26.374 | 273 | 138 | 9 | 67 | 312 | 27 | 263 | 1.27e-12 | 68.9 |
Find 197 sgRNAs with CRISPR-Local
Find 355 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCTCTGCTCTTCGATTTCT+TGG | 0.162405 | 3_1:+70099172 | None:intergenic |
| CCTCTACTCTTAGATTTCTT+TGG | 0.166255 | 3_1:+70099242 | None:intergenic |
| CTCTACTCTTAGATTTCTTT+GGG | 0.202709 | 3_1:+70099243 | None:intergenic |
| CCTCTCCTCTTTGATTTCTT+AGG | 0.205680 | 3_1:+70099380 | None:intergenic |
| TGTTATATCTGTAAGCTATT+TGG | 0.213807 | 3_1:-70101404 | Msa0371880:CDS |
| GTTGGAGTTCTAAAATTTCT+AGG | 0.253916 | 3_1:-70098950 | Msa0371880:CDS |
| TGCTTGAAGTGTGGAAATTC+TGG | 0.255080 | 3_1:-70101623 | Msa0371880:CDS |
| TGGAACTCCGACCGAATTCT+AGG | 0.257138 | 3_1:-70102987 | Msa0371880:five_prime_UTR |
| CCTCTGCTCTTCGATTTCTT+GGG | 0.268801 | 3_1:+70099173 | None:intergenic |
| TTCAGTTCGGTCCACCCTTC+AGG | 0.320128 | 3_1:-70098618 | Msa0371880:three_prime_UTR |
| ACCTCTGCTCTTGAATTTCA+TGG | 0.321755 | 3_1:+70099103 | None:intergenic |
| CCACACCTACTTTGTGCTAT+AGG | 0.325071 | 3_1:-70099852 | Msa0371880:CDS |
| CATAGTAGAAGTATTGTAAA+TGG | 0.325521 | 3_1:+70098458 | None:intergenic |
| TTGGTCTGCACCTCTCGATA+TGG | 0.332692 | 3_1:-70099456 | Msa0371880:CDS |
| ACCCTGCTACATATCTTAAA+AGG | 0.332753 | 3_1:+70098505 | None:intergenic |
| GAGAATGCACAAGTTCTATC+AGG | 0.341187 | 3_1:-70099804 | Msa0371880:CDS |
| CTGAGGTGTGCTGTAAGATT+AGG | 0.341520 | 3_1:-70103027 | Msa0371880:five_prime_UTR |
| CCAACACGTACACTTTGATT+TGG | 0.344438 | 3_1:+70102702 | None:intergenic |
| CTTGAGACTCAGATCTTGAT+TGG | 0.346562 | 3_1:+70102839 | None:intergenic |
| CGTGCAGTCATGTGCTTCTC+TGG | 0.357612 | 3_1:+70101668 | None:intergenic |
| TGCTGCAAAACAATGTTCTA+AGG | 0.360499 | 3_1:-70101814 | Msa0371880:intron |
| CCTTGGGAATATGAGGCTTC+AGG | 0.367415 | 3_1:+70098909 | None:intergenic |
| AGGTAAAACGGCGTCGTTAG+AGG | 0.370608 | 3_1:+70102776 | None:intergenic |
| GTAAAGCTTCTTTCTTCTGT+AGG | 0.375344 | 3_1:+70099269 | None:intergenic |
| TGAGGTGTGCTGTAAGATTA+GGG | 0.375516 | 3_1:-70103026 | Msa0371880:five_prime_UTR |
| ACTCTAGTGGTGAAGGATAT+AGG | 0.378837 | 3_1:-70098788 | Msa0371880:CDS |
| TTGTGCATTCTCGAGCAAAA+TGG | 0.383267 | 3_1:+70099815 | None:intergenic |
| TCTCTTCTTCCAAGTCCAAT+AGG | 0.385087 | 3_1:-70099052 | Msa0371880:CDS |
| AAGAGTAGAGGTGGCTGGAC+GGG | 0.393769 | 3_1:-70099230 | Msa0371880:CDS |
| CTCCCATGCCGCCTAGAATT+CGG | 0.401473 | 3_1:+70102976 | None:intergenic |
| AAGGATATAGGAGAGGTAAT+TGG | 0.404417 | 3_1:-70098776 | Msa0371880:CDS |
| CATGCTCCCCAACTACTATC+TGG | 0.404551 | 3_1:+70101927 | None:intergenic |
| GAAGCATGAATCTGTGGAAC+TGG | 0.408067 | 3_1:-70102129 | Msa0371880:CDS |
| TGCTATGTTTGTGGTGAGTT+GGG | 0.415216 | 3_1:-70101840 | Msa0371880:CDS |
| TTGACCCTCCAGATAGTAGT+TGG | 0.416306 | 3_1:-70101935 | Msa0371880:CDS |
| TGATAGAATATGTGCATTCT+CGG | 0.420405 | 3_1:+70099683 | None:intergenic |
| AGGACTCCAACTGGTCCTAT+TGG | 0.422284 | 3_1:+70099037 | None:intergenic |
| TGATTCGTGGTCTCTTGCCT+TGG | 0.422760 | 3_1:+70102932 | None:intergenic |
| CCACACCTACTTTGTGCTAT+AGG | 0.427699 | 3_1:-70099729 | Msa0371880:CDS |
| AATATTTATGCGAGTGGTAG+TGG | 0.429800 | 3_1:-70098987 | Msa0371880:CDS |
| CTCTGCTCTTCGATTTCTTG+GGG | 0.432190 | 3_1:+70099174 | None:intergenic |
| TCTGGAGGGTCAAAATATCT+TGG | 0.434365 | 3_1:+70101945 | None:intergenic |
| AGTAGTTCGGCATCAAGGTT+TGG | 0.435020 | 3_1:-70098813 | Msa0371880:CDS |
| GTTACGAACATAAGTTCAAC+AGG | 0.437267 | 3_1:+70098547 | None:intergenic |
| ATCATAGATATTCGTCATCA+AGG | 0.437302 | 3_1:-70098869 | Msa0371880:CDS |
| AGATATTCGTCATCAAGGTT+TGG | 0.438735 | 3_1:-70098864 | Msa0371880:CDS |
| TTGGAGTTCTAAAATTTCTA+GGG | 0.445546 | 3_1:-70098949 | Msa0371880:CDS |
| TAAAGCTTCTTTCTTCTGTA+GGG | 0.446719 | 3_1:+70099270 | None:intergenic |
| GGAAAGCATCGGCTGACCCT+TGG | 0.447016 | 3_1:+70098892 | None:intergenic |
| TGACCCTCCAGATAGTAGTT+GGG | 0.451078 | 3_1:-70101934 | Msa0371880:CDS |
| TGTGGTCAGATGGGTCATAC+TGG | 0.453010 | 3_1:-70101323 | Msa0371880:CDS |
| AGAGTAGAGGTGGCTGGACG+GGG | 0.454054 | 3_1:-70099229 | Msa0371880:CDS |
| GTTTCGATTCTCGTGTTCGA+AGG | 0.457467 | 3_1:+70102802 | None:intergenic |
| GAAAGCATCGGCTGACCCTT+GGG | 0.458498 | 3_1:+70098893 | None:intergenic |
| GTATAGCTTCTTTCTTCTGT+AGG | 0.461609 | 3_1:+70099338 | None:intergenic |
| TCTCCTATATCCATCATCAT+TGG | 0.461769 | 3_1:+70098836 | None:intergenic |
| ACTCCAATGATGATGGATAT+AGG | 0.461906 | 3_1:-70098839 | Msa0371880:CDS |
| TTGGAAGAAGAGAATTCTCC+AGG | 0.464073 | 3_1:+70099062 | None:intergenic |
| GGCTGACCCTTGGGAATATG+AGG | 0.468220 | 3_1:+70098902 | None:intergenic |
| TTGTTACAAATGTGGTCAGA+TGG | 0.471165 | 3_1:-70101333 | Msa0371880:CDS |
| AGTTGCTACGTCTGCAAGAA+AGG | 0.472885 | 3_1:-70101713 | Msa0371880:CDS |
| TTAAAGTCTCTATCTTCTGC+AGG | 0.473283 | 3_1:+70099131 | None:intergenic |
| TCCACCCTTCAGGAAGTAAT+GGG | 0.479144 | 3_1:-70098608 | Msa0371880:three_prime_UTR |
| AATTGATGCAGGCATGTTCA+AGG | 0.479193 | 3_1:-70099900 | Msa0371880:intron |
| GTGCTATAGGTGTGGTGAAG+GGG | 0.485852 | 3_1:-70099716 | Msa0371880:CDS |
| TTTCGATTCTCGTGTTCGAA+GGG | 0.487535 | 3_1:+70102803 | None:intergenic |
| TGTCCCCGCAGGACTCCAAC+TGG | 0.488598 | 3_1:+70099028 | None:intergenic |
| TTGCCACAAGTCTTTCAGTT+CGG | 0.488684 | 3_1:-70098631 | Msa0371880:three_prime_UTR |
| TGGTCTGCACCTCTCGATAT+GGG | 0.489901 | 3_1:-70099455 | Msa0371880:CDS |
| TGCTATAATTGTGGCGAGGA+AGG | 0.493123 | 3_1:-70101906 | Msa0371880:CDS |
| TCTTGCAGACGTAGCAACTC+TGG | 0.493736 | 3_1:+70101717 | None:intergenic |
| AATCGAAGAGCAGAGGTGGC+TGG | 0.497514 | 3_1:-70099166 | Msa0371880:CDS |
| TTGTGCTATAGGTGTGGTGA+AGG | 0.499258 | 3_1:-70099718 | Msa0371880:CDS |
| TTGTAACAAGAAATTTCTCC+CGG | 0.503043 | 3_1:+70101347 | None:intergenic |
| GTCCACCCTTCAGGAAGTAA+TGG | 0.506939 | 3_1:-70098609 | Msa0371880:three_prime_UTR |
| AGGACCAGTTGGAGTCCTGC+GGG | 0.507329 | 3_1:-70099032 | Msa0371880:CDS |
| ATGCTATGTTTGTGGTGAGT+TGG | 0.510523 | 3_1:-70101841 | Msa0371880:CDS |
| CCTCTGCTCTTGAATTTCAT+GGG | 0.511578 | 3_1:+70099104 | None:intergenic |
| AAAACAACCTTGAGATCATC+CGG | 0.511648 | 3_1:+70101566 | None:intergenic |
| TTGATGACGAATATCTATGA+TGG | 0.512902 | 3_1:+70098871 | None:intergenic |
| TGGATATAGGAGAAGTAGTT+CGG | 0.513451 | 3_1:-70098826 | Msa0371880:CDS |
| AATTCAAGAGCAGAGGTGGC+TGG | 0.513526 | 3_1:-70099097 | Msa0371880:CDS |
| CCAACTGGTCCTATTGGACT+TGG | 0.517424 | 3_1:+70099043 | None:intergenic |
| AGGCGGCATGGGAGGGAGGA+AGG | 0.519317 | 3_1:-70102967 | Msa0371880:exon |
| GGCTGGATGGCTGATCACCC+TGG | 0.522893 | 3_1:-70099080 | Msa0371880:CDS |
| ATATTAGTGTTTCTAGCAGA+TGG | 0.528319 | 3_1:+70099005 | None:intergenic |
| AATCAAAGAGGAGAGGTGGC+TGG | 0.529181 | 3_1:-70099373 | Msa0371880:CDS |
| GATAGAATATGTGCATTCTC+GGG | 0.530153 | 3_1:+70099684 | None:intergenic |
| GACCGAATTCTAGGCGGCAT+GGG | 0.531749 | 3_1:-70102978 | Msa0371880:exon |
| CGACCGAATTCTAGGCGGCA+TGG | 0.532389 | 3_1:-70102979 | Msa0371880:exon |
| ATGCAGGAATGATTATTCAC+CGG | 0.532954 | 3_1:-70101585 | Msa0371880:CDS |
| GACCCTCCAGATAGTAGTTG+GGG | 0.533076 | 3_1:-70101933 | Msa0371880:CDS |
| CAGCATTGACACAACATAAG+TGG | 0.533186 | 3_1:+70101381 | None:intergenic |
| GAAATTTCTTGTTACAAATG+TGG | 0.535838 | 3_1:-70101341 | Msa0371880:CDS |
| TTTGGCAACTCCAATGATGA+TGG | 0.536537 | 3_1:-70098846 | Msa0371880:CDS |
| GATATAGGAGAGGTAATTGG+TGG | 0.536780 | 3_1:-70098773 | Msa0371880:CDS |
| ATGAAATTCAAGAGCAGAGG+TGG | 0.536820 | 3_1:-70099101 | Msa0371880:CDS |
| GCTTGAAGTGTGGAAATTCT+GGG | 0.538694 | 3_1:-70101622 | Msa0371880:CDS |
| GAATTCTAGGCGGCATGGGA+GGG | 0.540611 | 3_1:-70102974 | Msa0371880:exon |
| TTCTAGGCGGCATGGGAGGG+AGG | 0.541783 | 3_1:-70102971 | Msa0371880:exon |
| AAGCCTCTTTCGTCTGTATG+AGG | 0.542030 | 3_1:+70099410 | None:intergenic |
| AGATTTCTGAGGAGGTAAAA+CGG | 0.542148 | 3_1:+70102764 | None:intergenic |
| CGAGATTGTCGATTGATTCG+TGG | 0.542996 | 3_1:+70102919 | None:intergenic |
| GGTAGTGGAAGTCGAACTCC+AGG | 0.543268 | 3_1:-70098972 | Msa0371880:CDS |
| AATCTAAGAGTAGAGGTGGC+TGG | 0.543601 | 3_1:-70099235 | Msa0371880:CDS |
| CTAGCAGATGGTGTCCCCGC+AGG | 0.545192 | 3_1:+70099017 | None:intergenic |
| TCAGATGGGTCATACTGGTT+CGG | 0.545818 | 3_1:-70101318 | Msa0371880:intron |
| CGAATTCTAGGCGGCATGGG+AGG | 0.545884 | 3_1:-70102975 | Msa0371880:exon |
| AGAATGCACATATTCTATCA+AGG | 0.551056 | 3_1:-70099680 | Msa0371880:intron |
| AAGTTTCAAAGTGAGACTAC+TGG | 0.551532 | 3_1:-70099757 | Msa0371880:CDS |
| TAAGAGTAGAGGTGGCTGGA+CGG | 0.552846 | 3_1:-70099231 | Msa0371880:CDS |
| GTACGCCCATTACTTCCTGA+AGG | 0.553311 | 3_1:+70098603 | None:intergenic |
| TGTTACAAATGTGGTCAGAT+GGG | 0.553753 | 3_1:-70101332 | Msa0371880:CDS |
| CTTTAAAGAAAATGAATACA+CGG | 0.557755 | 3_1:-70099483 | Msa0371880:CDS |
| AAGAAACCATGCTATGTTTG+TGG | 0.558569 | 3_1:-70101849 | Msa0371880:CDS |
| GAGGAGAGGTGGCTGGATGA+CGG | 0.558594 | 3_1:-70099366 | Msa0371880:CDS |
| GAGCAGAGGTGGCTGGACAA+TGG | 0.559542 | 3_1:-70099159 | Msa0371880:CDS |
| TCTACTCTTAGATTTCTTTG+GGG | 0.561458 | 3_1:+70099244 | None:intergenic |
| TGCTATAGGTGTGGTGAAGG+GGG | 0.563583 | 3_1:-70099715 | Msa0371880:CDS |
| GGAGAAGTAGTTCGGCATCA+AGG | 0.564646 | 3_1:-70098818 | Msa0371880:CDS |
| TATCAGGGTACAATTGATGC+AGG | 0.564930 | 3_1:-70099788 | Msa0371880:CDS |
| TCAGAAATCTGAGCTTCTGA+TGG | 0.565548 | 3_1:-70102751 | Msa0371880:CDS |
| GAAGCGAGTGTGGATCAGAT+AGG | 0.566927 | 3_1:-70102107 | Msa0371880:CDS |
| CAAGAGCAGAGGTGGCTGGA+TGG | 0.567200 | 3_1:-70099093 | Msa0371880:CDS |
| CAATGCTGCTGATGCAACAC+CGG | 0.572275 | 3_1:-70101366 | Msa0371880:CDS |
| CCCATGAAATTCAAGAGCAG+AGG | 0.572284 | 3_1:-70099104 | Msa0371880:CDS |
| TTTGGCAACTCTAGTGGTGA+AGG | 0.574137 | 3_1:-70098795 | Msa0371880:CDS |
| AAAATGAATACACGGGACAT+TGG | 0.575346 | 3_1:-70099475 | Msa0371880:CDS |
| GAAGGAGAAGTCGAAAGCCA+AGG | 0.576316 | 3_1:-70102949 | Msa0371880:CDS |
| CGGCCTCATACAGACGAAAG+AGG | 0.581226 | 3_1:-70099413 | Msa0371880:CDS |
| CCAAGTCCAATAGGACCAGT+TGG | 0.582670 | 3_1:-70099043 | Msa0371880:CDS |
| TTTAATGGCTGCAGAGCAAG+AGG | 0.583974 | 3_1:-70102177 | Msa0371880:CDS |
| AACACTAATATTTATGCGAG+TGG | 0.584709 | 3_1:-70098993 | Msa0371880:CDS |
| TGTGGAACTGGAAGCGAGTG+TGG | 0.585170 | 3_1:-70102117 | Msa0371880:CDS |
| CAGAGAAGCACATGACTGCA+CGG | 0.586586 | 3_1:-70101667 | Msa0371880:CDS |
| TGCTATAGGTGTGGTGAAGG+AGG | 0.587984 | 3_1:-70099838 | Msa0371880:CDS |
| AAGTAGAGGTGGCTGGACAA+TGG | 0.589351 | 3_1:-70099297 | Msa0371880:CDS |
| TTATTCACCGGATGATCTCA+AGG | 0.590352 | 3_1:-70101573 | Msa0371880:intron |
| TCAAGGTTTGGCAACTCTAG+TGG | 0.591012 | 3_1:-70098801 | Msa0371880:CDS |
| CCAAAGAAATCTAAGAGTAG+AGG | 0.593833 | 3_1:-70099242 | Msa0371880:CDS |
| TGTGCTATAGGTGTGGTGAA+GGG | 0.593983 | 3_1:-70099717 | Msa0371880:CDS |
| CAGGCATGTTCAAGGTTGCA+AGG | 0.596010 | 3_1:-70099892 | Msa0371880:CDS |
| AAGAAATCTAAGAGTAGAGG+TGG | 0.596476 | 3_1:-70099239 | Msa0371880:CDS |
| AAGAAATCGAAGAGCAGAGG+TGG | 0.600256 | 3_1:-70099170 | Msa0371880:CDS |
| AACTCACCACAAACATAGCA+TGG | 0.603091 | 3_1:+70101843 | None:intergenic |
| CTGCCGCTGAATACGAGTGA+AGG | 0.603577 | 3_1:+70102882 | None:intergenic |
| TAGGACCAGTTGGAGTCCTG+CGG | 0.605008 | 3_1:-70099033 | Msa0371880:CDS |
| TACGCCCATTACTTCCTGAA+GGG | 0.606309 | 3_1:+70098604 | None:intergenic |
| CCACACCTATAGCACAAAGT+AGG | 0.606681 | 3_1:+70099724 | None:intergenic |
| CCACACCTATAGCACAAAGT+AGG | 0.606681 | 3_1:+70099847 | None:intergenic |
| AGATCTGAGTCTCAAGATCG+TGG | 0.607666 | 3_1:-70102832 | Msa0371880:CDS |
| AGGTTGCAAGGTGAGACTAC+TGG | 0.608283 | 3_1:-70099880 | Msa0371880:CDS |
| GAGTAGAGGTGGCTGGACGG+GGG | 0.608327 | 3_1:-70099228 | Msa0371880:CDS |
| CTCCCCAACTACTATCTGGA+GGG | 0.609658 | 3_1:+70101931 | None:intergenic |
| GCCCATTACTTCCTGAAGGG+TGG | 0.613166 | 3_1:+70098607 | None:intergenic |
| AGAGAAGCACATGACTGCAC+GGG | 0.614866 | 3_1:-70101666 | Msa0371880:CDS |
| TGGGGAGCATGCTATAATTG+TGG | 0.615270 | 3_1:-70101915 | Msa0371880:CDS |
| TACAGAGAAGCATGAATCTG+TGG | 0.616167 | 3_1:-70102135 | Msa0371880:CDS |
| TCTGCTCTTCGATTTCTTGG+GGG | 0.616452 | 3_1:+70099175 | None:intergenic |
| AAGAAATCAAAGAGGAGAGG+TGG | 0.616538 | 3_1:-70099377 | Msa0371880:CDS |
| GTGGAAGTCGAACTCCAGGT+TGG | 0.617850 | 3_1:-70098968 | Msa0371880:CDS |
| CCTATAGCACAAAGTAGGTG+TGG | 0.621452 | 3_1:+70099852 | None:intergenic |
| AGAATGCACAAGTTCTATCA+GGG | 0.622439 | 3_1:-70099803 | Msa0371880:CDS |
| GCTGAATACGAGTGAAGGAG+TGG | 0.622721 | 3_1:+70102887 | None:intergenic |
| AATGCTGCTGATGCAACACC+GGG | 0.624524 | 3_1:-70101365 | Msa0371880:CDS |
| CCTGAAGCCTCATATTCCCA+AGG | 0.625347 | 3_1:-70098909 | Msa0371880:CDS |
| AGAAGCTCAGATTTCTGAGG+AGG | 0.625578 | 3_1:+70102756 | None:intergenic |
| AATGGCTGCAGAGCAAGAGG+TGG | 0.629284 | 3_1:-70102174 | Msa0371880:CDS |
| GCTCCCCAACTACTATCTGG+AGG | 0.629473 | 3_1:+70101930 | None:intergenic |
| TTGTGCTATAGGTGTGGTGA+AGG | 0.629866 | 3_1:-70099841 | Msa0371880:CDS |
| TGGAGTTCTAAAATTTCTAG+GGG | 0.630318 | 3_1:-70098948 | Msa0371880:CDS |
| TTTAAAGAAAATGAATACAC+GGG | 0.632266 | 3_1:-70099482 | Msa0371880:CDS |
| CCCAAGAAATCGAAGAGCAG+AGG | 0.632661 | 3_1:-70099173 | Msa0371880:CDS |
| ATATCTATGATGGAAAGCAT+CGG | 0.635238 | 3_1:+70098881 | None:intergenic |
| ACTCCTTCACTCGTATTCAG+CGG | 0.641368 | 3_1:-70102885 | Msa0371880:CDS |
| CATGCCGCCTAGAATTCGGT+CGG | 0.658486 | 3_1:+70102980 | None:intergenic |
| ACGGGCTTCTAAAAGTCTGA+CGG | 0.658559 | 3_1:-70101648 | Msa0371880:CDS |
| CCTAAGAAATCAAAGAGGAG+AGG | 0.660128 | 3_1:-70099380 | Msa0371880:CDS |
| CCTATAGCACAAAGTAGGTG+TGG | 0.661415 | 3_1:+70099729 | None:intergenic |
| TGGAAGAAGAGAATTCTCCA+GGG | 0.661485 | 3_1:+70099063 | None:intergenic |
| CTGAAGCCTCATATTCCCAA+GGG | 0.662550 | 3_1:-70098908 | Msa0371880:CDS |
| GGACCGAACTGAAAGACTTG+TGG | 0.662660 | 3_1:+70098628 | None:intergenic |
| TGCTACGTCTGCAAGAAAGG+TGG | 0.663544 | 3_1:-70101710 | Msa0371880:CDS |
| ATCAGAAGCTCAGATTTCTG+AGG | 0.664294 | 3_1:+70102753 | None:intergenic |
| TAAACTGTACAGCAGCGAAG+CGG | 0.671137 | 3_1:-70101872 | Msa0371880:CDS |
| CAACACCTAAGAAATCAAAG+AGG | 0.673886 | 3_1:-70099385 | Msa0371880:CDS |
| GGATCAGATAGGTGACAACA+TGG | 0.674837 | 3_1:-70102096 | Msa0371880:CDS |
| TCAAAGTGAGACTACTGGTG+CGG | 0.678171 | 3_1:-70099752 | Msa0371880:CDS |
| CCTACTTTGTGCTATAGGTG+TGG | 0.685206 | 3_1:-70099724 | Msa0371880:CDS |
| CCTACTTTGTGCTATAGGTG+TGG | 0.685206 | 3_1:-70099847 | Msa0371880:CDS |
| AGTGGTGAAGGATATAGGAG+AGG | 0.686632 | 3_1:-70098783 | Msa0371880:CDS |
| CTGACGGTATGCTTGAAGTG+TGG | 0.691033 | 3_1:-70101632 | Msa0371880:CDS |
| CGAGTGAAGGAGTGGAAGCG+CGG | 0.692324 | 3_1:+70102895 | None:intergenic |
| AGCATGCTATAATTGTGGCG+AGG | 0.714278 | 3_1:-70101910 | Msa0371880:CDS |
| GGACCAGTTGGAGTCCTGCG+GGG | 0.722458 | 3_1:-70099031 | Msa0371880:CDS |
| GGAGTTCTAAAATTTCTAGG+GGG | 0.732106 | 3_1:-70098947 | Msa0371880:CDS |
| AACTCCGACCGAATTCTAGG+CGG | 0.740872 | 3_1:-70102984 | Msa0371880:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTTTTTTTTAGTTTTATTTT+TGG | + | chr3_1:70098455-70098474 | None:intergenic | 10.0% |
| !! | AATAATAAATAACAAAGAAA+AGG | + | chr3_1:70101924-70101943 | None:intergenic | 10.0% |
| !! | AATCAGATTATGATTTAATT+TGG | - | chr3_1:70098954-70098973 | Msa0371880:CDS | 15.0% |
| !!! | ATATATTACAAATTTGCTAA+AGG | - | chr3_1:70100001-70100020 | Msa0371880:intron | 15.0% |
| !!! | TTTCTTTCTTTTGTTTAATT+AGG | - | chr3_1:70100097-70100116 | Msa0371880:intron | 15.0% |
| !! | AAACTTAACATAATATATTC+AGG | + | chr3_1:70101326-70101345 | None:intergenic | 15.0% |
| !! | TATTAAAATAGTGAATTCAA+TGG | - | chr3_1:70101379-70101398 | Msa0371880:CDS | 15.0% |
| !! | ATTAAAATAGTGAATTCAAT+GGG | - | chr3_1:70101380-70101399 | Msa0371880:CDS | 15.0% |
| !! | TAATCTGATTGATATCAAAA+GGG | + | chr3_1:70098944-70098963 | None:intergenic | 20.0% |
| !! | ATAATCTGATTGATATCAAA+AGG | + | chr3_1:70098945-70098964 | None:intergenic | 20.0% |
| !!! | ATTATGATTTAATTTGGATC+TGG | - | chr3_1:70098960-70098979 | Msa0371880:CDS | 20.0% |
| !! | ATAAAAATTGCATTGTAACA+TGG | - | chr3_1:70099002-70099021 | Msa0371880:CDS | 20.0% |
| !!! | TTGATAGTAATTTTATTTCC+TGG | - | chr3_1:70100705-70100724 | Msa0371880:intron | 20.0% |
| !! | ATGATAGGATAATTAAGAAT+TGG | - | chr3_1:70101010-70101029 | Msa0371880:intron | 20.0% |
| !! | ACATTACTACTAAATAACTT+TGG | + | chr3_1:70101109-70101128 | None:intergenic | 20.0% |
| !! | TTACTTCCAAATAAAACTAT+TGG | - | chr3_1:70101589-70101608 | Msa0371880:CDS | 20.0% |
| !!! | TATTTGCCAATAGTTTTATT+TGG | + | chr3_1:70101598-70101617 | None:intergenic | 20.0% |
| !!! | CTTTAAAGAAAATGAATACA+CGG | - | chr3_1:70102049-70102068 | Msa0371880:intron | 20.0% |
| !! | TTTAAAGAAAATGAATACAC+GGG | - | chr3_1:70102050-70102069 | Msa0371880:intron | 20.0% |
| !! | ATTTAAAAAAACTTGCAAGT+AGG | + | chr3_1:70102839-70102858 | None:intergenic | 20.0% |
| ! | AAAAAAAAACTGAAGATCTG+AGG | - | chr3_1:70098488-70098507 | Msa0371880:three_prime_UTR | 25.0% |
| !!! | AGGGTTTTCATTTTTCAATT+TGG | - | chr3_1:70098525-70098544 | Msa0371880:three_prime_UTR | 25.0% |
| !!! | TTGATTTGTAGAGACATTTT+AGG | - | chr3_1:70099115-70099134 | Msa0371880:CDS | 25.0% |
| !!! | TTTTAGGAACTAACCTAAAA+AGG | - | chr3_1:70099131-70099150 | Msa0371880:CDS | 25.0% |
| !! | AAAATTCCTCGAACTTTTAT+AGG | + | chr3_1:70099225-70099244 | None:intergenic | 25.0% |
| !!! | AATGTTTTTGCTTTCTATGT+AGG | - | chr3_1:70099331-70099350 | Msa0371880:CDS | 25.0% |
| ! | TGTTATATCTGTAAGCTATT+TGG | - | chr3_1:70100128-70100147 | Msa0371880:intron | 25.0% |
| ! | GAAATTTCTTGTTACAAATG+TGG | - | chr3_1:70100191-70100210 | Msa0371880:intron | 25.0% |
| ! | TTAATAATTATGCACCTTTC+CGG | - | chr3_1:70100251-70100270 | Msa0371880:intron | 25.0% |
| ! | ATGTGAGTATAAATTTCAGA+GGG | + | chr3_1:70100681-70100700 | None:intergenic | 25.0% |
| ! | AATGTGAGTATAAATTTCAG+AGG | + | chr3_1:70100682-70100701 | None:intergenic | 25.0% |
| !!! | GTAATTTTATTTCCTGGTAT+TGG | - | chr3_1:70100711-70100730 | Msa0371880:intron | 25.0% |
| ! | ACATATTATAGCTGAGAAAA+TGG | + | chr3_1:70101556-70101575 | None:intergenic | 25.0% |
| ! | TACAGTCTAAAAATTTAGTC+AGG | - | chr3_1:70101875-70101894 | Msa0371880:CDS | 25.0% |
| !! | CGTGTATTCATTTTCTTTAA+AGG | + | chr3_1:70102051-70102070 | None:intergenic | 25.0% |
| !!! | TTGGAGTTCTAAAATTTCTA+GGG | - | chr3_1:70102583-70102602 | Msa0371880:intron | 25.0% |
| !! | TCATTTTACAAGTTTACAGA+TGG | + | chr3_1:70102814-70102833 | None:intergenic | 25.0% |
| !!! | CATAGTAGAAGTATTGTAAA+TGG | + | chr3_1:70103077-70103096 | None:intergenic | 25.0% |
| TTAATCAAATCATGCCAAGT+AGG | - | chr3_1:70099090-70099109 | Msa0371880:CDS | 30.0% | |
| TCTACAAATCAATTCCTACT+TGG | + | chr3_1:70099107-70099126 | None:intergenic | 30.0% | |
| TCAAATCCTATAAAAGTTCG+AGG | - | chr3_1:70099216-70099235 | Msa0371880:CDS | 30.0% | |
| TTAATAAAACAACACCCACT+TGG | - | chr3_1:70099285-70099304 | Msa0371880:CDS | 30.0% | |
| !! | GCTTTCTATGTAGGTTTTAA+TGG | - | chr3_1:70099340-70099359 | Msa0371880:CDS | 30.0% |
| TTTCAAAATAGTGTACCACA+AGG | - | chr3_1:70099515-70099534 | Msa0371880:CDS | 30.0% | |
| TTAAACCTTCATAAGCCAAT+AGG | + | chr3_1:70099756-70099775 | None:intergenic | 30.0% | |
| ! | ATTGGCTTATGAAGGTTTAA+AGG | - | chr3_1:70099756-70099775 | Msa0371880:CDS | 30.0% |
| !! | ACAAATTTGCTAAAGGTTCT+TGG | - | chr3_1:70100008-70100027 | Msa0371880:intron | 30.0% |
| TTGTAACAAGAAATTTCTCC+CGG | + | chr3_1:70100188-70100207 | None:intergenic | 30.0% | |
| AAAAAAGAGATGCTTATCTC+CGG | + | chr3_1:70100281-70100300 | None:intergenic | 30.0% | |
| AATGATTGGAAGAGATTATC+AGG | + | chr3_1:70100459-70100478 | None:intergenic | 30.0% | |
| TGACATTTAAGGGTAATGAT+TGG | + | chr3_1:70100473-70100492 | None:intergenic | 30.0% | |
| ! | TGGTAATGAATAGCAGAAAA+AGG | - | chr3_1:70100599-70100618 | Msa0371880:intron | 30.0% |
| GGTAATGAATAGCAGAAAAA+GGG | - | chr3_1:70100600-70100619 | Msa0371880:intron | 30.0% | |
| GGGAATCAAGTAAGTTTAAA+AGG | + | chr3_1:70100661-70100680 | None:intergenic | 30.0% | |
| TGCTACAATGAAAGTTAGAT+TGG | - | chr3_1:70100787-70100806 | Msa0371880:intron | 30.0% | |
| CATCTATGGTATAGAAAATG+TGG | - | chr3_1:70100810-70100829 | Msa0371880:intron | 30.0% | |
| TATGGTATAGAAAATGTGGT+AGG | - | chr3_1:70100814-70100833 | Msa0371880:intron | 30.0% | |
| ATGGTATAGAAAATGTGGTA+GGG | - | chr3_1:70100815-70100834 | Msa0371880:intron | 30.0% | |
| ! | GAAGCATTAGTAAGAATAGT+AGG | - | chr3_1:70100880-70100899 | Msa0371880:intron | 30.0% |
| CTTTAAGCTTGATTCATGAT+AGG | - | chr3_1:70100995-70101014 | Msa0371880:intron | 30.0% | |
| TGGATATTCCCTAAAAATGA+TGG | - | chr3_1:70101030-70101049 | Msa0371880:intron | 30.0% | |
| TGATAGAATATGTGCATTCT+CGG | + | chr3_1:70101852-70101871 | None:intergenic | 30.0% | |
| AGAATGCACATATTCTATCA+AGG | - | chr3_1:70101852-70101871 | Msa0371880:CDS | 30.0% | |
| !!! | CCTCTACTTTTTGATTTCTT+AGG | + | chr3_1:70102224-70102243 | None:intergenic | 30.0% |
| CCTAAGAAATCAAAAAGTAG+AGG | - | chr3_1:70102221-70102240 | Msa0371880:intron | 30.0% | |
| AAGAAATCAAAAAGTAGAGG+TGG | - | chr3_1:70102224-70102243 | Msa0371880:intron | 30.0% | |
| TAAAGCTTCTTTCTTCTGTA+GGG | + | chr3_1:70102265-70102284 | None:intergenic | 30.0% | |
| TCTACTCTTAGATTTCTTTG+GGG | + | chr3_1:70102291-70102310 | None:intergenic | 30.0% | |
| CTCTACTCTTAGATTTCTTT+GGG | + | chr3_1:70102292-70102311 | None:intergenic | 30.0% | |
| !! | ATATTAGTGTTTCTAGCAGA+TGG | + | chr3_1:70102530-70102549 | None:intergenic | 30.0% |
| AACACTAATATTTATGCGAG+TGG | - | chr3_1:70102539-70102558 | Msa0371880:intron | 30.0% | |
| !! | GTTGGAGTTCTAAAATTTCT+AGG | - | chr3_1:70102582-70102601 | Msa0371880:intron | 30.0% |
| !! | TGGAGTTCTAAAATTTCTAG+GGG | - | chr3_1:70102584-70102603 | Msa0371880:intron | 30.0% |
| ! | ATATCTATGATGGAAAGCAT+CGG | + | chr3_1:70102654-70102673 | None:intergenic | 30.0% |
| !! | TTGATGACGAATATCTATGA+TGG | + | chr3_1:70102664-70102683 | None:intergenic | 30.0% |
| ATCATAGATATTCGTCATCA+AGG | - | chr3_1:70102663-70102682 | Msa0371880:intron | 30.0% | |
| ! | AGATTTCTGAGGAGGTAAAA+CGG | + | chr3_1:70098771-70098790 | None:intergenic | 35.0% |
| CAGCATCAGAGTGATTTAAT+TGG | - | chr3_1:70099154-70099173 | Msa0371880:CDS | 35.0% | |
| ! | CGATGTTTCTTTTCTATCAG+CGG | - | chr3_1:70099561-70099580 | Msa0371880:intron | 35.0% |
| ! | GATGTTTCTTTTCTATCAGC+GGG | - | chr3_1:70099562-70099581 | Msa0371880:intron | 35.0% |
| ! | ATGTTTCTTTTCTATCAGCG+GGG | - | chr3_1:70099563-70099582 | Msa0371880:intron | 35.0% |
| AAGAAACCATGCTATGTTTG+TGG | - | chr3_1:70099683-70099702 | Msa0371880:CDS | 35.0% | |
| TGCTGCAAAACAATGTTCTA+AGG | - | chr3_1:70099718-70099737 | Msa0371880:CDS | 35.0% | |
| ATGCAGGAATGATTATTCAC+CGG | - | chr3_1:70099947-70099966 | Msa0371880:intron | 35.0% | |
| AAAACAACCTTGAGATCATC+CGG | + | chr3_1:70099969-70099988 | None:intergenic | 35.0% | |
| TTGAGTTTGCATTGGAATAG+TGG | - | chr3_1:70100031-70100050 | Msa0371880:intron | 35.0% | |
| TTGTTACAAATGTGGTCAGA+TGG | - | chr3_1:70100199-70100218 | Msa0371880:intron | 35.0% | |
| TGTTACAAATGTGGTCAGAT+GGG | - | chr3_1:70100200-70100219 | Msa0371880:intron | 35.0% | |
| ACATTGTAAAGTCTCTAGTG+TGG | + | chr3_1:70100382-70100401 | None:intergenic | 35.0% | |
| !! | TTGACAGCACTGACATTTAA+GGG | + | chr3_1:70100483-70100502 | None:intergenic | 35.0% |
| !! | ATTGACAGCACTGACATTTA+AGG | + | chr3_1:70100484-70100503 | None:intergenic | 35.0% |
| ! | TTGCGGATTGCAAAAAATAG+CGG | - | chr3_1:70100503-70100522 | Msa0371880:intron | 35.0% |
| GTCACAGTATTGTCAAATAG+CGG | + | chr3_1:70100574-70100593 | None:intergenic | 35.0% | |
| TGACAATACTGTGACATGTA+TGG | - | chr3_1:70100579-70100598 | Msa0371880:intron | 35.0% | |
| GAAAGTTAGATTGGCATCTA+TGG | - | chr3_1:70100796-70100815 | Msa0371880:intron | 35.0% | |
| TACCTGAACCAACAAAGATA+AGG | + | chr3_1:70100841-70100860 | None:intergenic | 35.0% | |
| AGTAAGAATAGTAGGCTAGA+TGG | - | chr3_1:70100888-70100907 | Msa0371880:intron | 35.0% | |
| GAGGGAAAACATTTGAAAAC+TGG | - | chr3_1:70100935-70100954 | Msa0371880:intron | 35.0% | |
| GGAAAACATTTGAAAACTGG+AGG | - | chr3_1:70100938-70100957 | Msa0371880:intron | 35.0% | |
| !! | TGCAGCATCCATCATTTTTA+GGG | + | chr3_1:70101041-70101060 | None:intergenic | 35.0% |
| !! | ATGCAGCATCCATCATTTTT+AGG | + | chr3_1:70101042-70101061 | None:intergenic | 35.0% |
| ATAGCCATTGGGACATTAAA+AGG | + | chr3_1:70101189-70101208 | None:intergenic | 35.0% | |
| AAGCTTTCAAAAATGGCCTT+GGG | + | chr3_1:70101523-70101542 | None:intergenic | 35.0% | |
| AAAGCTTTCAAAAATGGCCT+TGG | + | chr3_1:70101524-70101543 | None:intergenic | 35.0% | |
| !!! | AAGGCCATTTTTGAAAGCTT+TGG | - | chr3_1:70101523-70101542 | Msa0371880:intron | 35.0% |
| ATCTGAGTATCAATTGATGC+AGG | - | chr3_1:70101621-70101640 | Msa0371880:CDS | 35.0% | |
| AGAATGCACAAGTTCTATCA+GGG | - | chr3_1:70101729-70101748 | Msa0371880:intron | 35.0% | |
| AAGTTTCAAAGTGAGACTAC+TGG | - | chr3_1:70101775-70101794 | Msa0371880:intron | 35.0% | |
| GATAGAATATGTGCATTCTC+GGG | + | chr3_1:70101851-70101870 | None:intergenic | 35.0% | |
| AAAATGAATACACGGGACAT+TGG | - | chr3_1:70102057-70102076 | Msa0371880:intron | 35.0% | |
| GCAAAACGCACAAAAAGAAA+CGG | - | chr3_1:70102099-70102118 | Msa0371880:CDS | 35.0% | |
| CAACACCTAAGAAATCAAAG+AGG | - | chr3_1:70102147-70102166 | Msa0371880:CDS | 35.0% | |
| GTATAGCTTCTTTCTTCTGT+AGG | + | chr3_1:70102197-70102216 | None:intergenic | 35.0% | |
| GTAAAGCTTCTTTCTTCTGT+AGG | + | chr3_1:70102266-70102285 | None:intergenic | 35.0% | |
| CCTCTACTCTTAGATTTCTT+TGG | + | chr3_1:70102293-70102312 | None:intergenic | 35.0% | |
| CCAAAGAAATCTAAGAGTAG+AGG | - | chr3_1:70102290-70102309 | Msa0371880:intron | 35.0% | |
| AAGAAATCTAAGAGTAGAGG+TGG | - | chr3_1:70102293-70102312 | Msa0371880:intron | 35.0% | |
| ! | GAGCATTTTACTGAAGAAAG+AGG | - | chr3_1:70102326-70102345 | Msa0371880:intron | 35.0% |
| TTAAAGTCTCTATCTTCTGC+AGG | + | chr3_1:70102404-70102423 | None:intergenic | 35.0% | |
| AATATTTATGCGAGTGGTAG+TGG | - | chr3_1:70102545-70102564 | Msa0371880:intron | 35.0% | |
| !!! | GAAATTTTAGAACTCCAACC+TGG | + | chr3_1:70102581-70102600 | None:intergenic | 35.0% |
| !! | GGAGTTCTAAAATTTCTAGG+GGG | - | chr3_1:70102585-70102604 | Msa0371880:intron | 35.0% |
| AGATATTCGTCATCAAGGTT+TGG | - | chr3_1:70102668-70102687 | Msa0371880:intron | 35.0% | |
| !! | ACTCCAATGATGATGGATAT+AGG | - | chr3_1:70102693-70102712 | Msa0371880:intron | 35.0% |
| TCTCCTATATCCATCATCAT+TGG | + | chr3_1:70102699-70102718 | None:intergenic | 35.0% | |
| TGGATATAGGAGAAGTAGTT+CGG | - | chr3_1:70102706-70102725 | Msa0371880:intron | 35.0% | |
| AAGGATATAGGAGAGGTAAT+TGG | - | chr3_1:70102756-70102775 | Msa0371880:CDS | 35.0% | |
| GTTACGAACATAAGTTCAAC+AGG | + | chr3_1:70102988-70103007 | None:intergenic | 35.0% | |
| !!! | TGCCTTTTAAGATATGTAGC+AGG | - | chr3_1:70103025-70103044 | Msa0371880:five_prime_UTR | 35.0% |
| !!! | GCCTTTTAAGATATGTAGCA+GGG | - | chr3_1:70103026-70103045 | Msa0371880:five_prime_UTR | 35.0% |
| ACCCTGCTACATATCTTAAA+AGG | + | chr3_1:70103030-70103049 | None:intergenic | 35.0% | |
| TGAGGTGTGCTGTAAGATTA+GGG | - | chr3_1:70098506-70098525 | Msa0371880:three_prime_UTR | 40.0% | |
| CTTGAGACTCAGATCTTGAT+TGG | + | chr3_1:70098696-70098715 | None:intergenic | 40.0% | |
| TTTCGATTCTCGTGTTCGAA+GGG | + | chr3_1:70098732-70098751 | None:intergenic | 40.0% | |
| ATCAGAAGCTCAGATTTCTG+AGG | + | chr3_1:70098782-70098801 | None:intergenic | 40.0% | |
| TCAGAAATCTGAGCTTCTGA+TGG | - | chr3_1:70098781-70098800 | Msa0371880:CDS | 40.0% | |
| CCAACACGTACACTTTGATT+TGG | + | chr3_1:70098833-70098852 | None:intergenic | 40.0% | |
| CCAAATCAAAGTGTACGTGT+TGG | - | chr3_1:70098830-70098849 | Msa0371880:CDS | 40.0% | |
| ATCCAAGTGATTCTCCAAGT+GGG | + | chr3_1:70099302-70099321 | None:intergenic | 40.0% | |
| AATCCAAGTGATTCTCCAAG+TGG | + | chr3_1:70099303-70099322 | None:intergenic | 40.0% | |
| ! | TACAGAGAAGCATGAATCTG+TGG | - | chr3_1:70099397-70099416 | Msa0371880:CDS | 40.0% |
| TACCACAAGGAATGCTTAGT+TGG | - | chr3_1:70099528-70099547 | Msa0371880:CDS | 40.0% | |
| ACCACAAGGAATGCTTAGTT+GGG | - | chr3_1:70099529-70099548 | Msa0371880:CDS | 40.0% | |
| TCTGGAGGGTCAAAATATCT+TGG | + | chr3_1:70099590-70099609 | None:intergenic | 40.0% | |
| AACTCACCACAAACATAGCA+TGG | + | chr3_1:70099692-70099711 | None:intergenic | 40.0% | |
| ATGCTATGTTTGTGGTGAGT+TGG | - | chr3_1:70099691-70099710 | Msa0371880:CDS | 40.0% | |
| TGCTATGTTTGTGGTGAGTT+GGG | - | chr3_1:70099692-70099711 | Msa0371880:CDS | 40.0% | |
| GTATACTGAGATCTGCTTGA+TGG | - | chr3_1:70099782-70099801 | Msa0371880:CDS | 40.0% | |
| ! | ATCTGCTTGATGGTCATGTA+GGG | - | chr3_1:70099792-70099811 | Msa0371880:CDS | 40.0% |
| TGCTTGAAGTGTGGAAATTC+TGG | - | chr3_1:70099909-70099928 | Msa0371880:intron | 40.0% | |
| GCTTGAAGTGTGGAAATTCT+GGG | - | chr3_1:70099910-70099929 | Msa0371880:intron | 40.0% | |
| ! | GGCATGATATGTTTTCATGC+AGG | - | chr3_1:70099931-70099950 | Msa0371880:intron | 40.0% |
| TTATTCACCGGATGATCTCA+AGG | - | chr3_1:70099959-70099978 | Msa0371880:intron | 40.0% | |
| GTTCTTGGTTGAGTTTGCAT+TGG | - | chr3_1:70100023-70100042 | Msa0371880:intron | 40.0% | |
| !! | CAGCATTGACACAACATAAG+TGG | + | chr3_1:70100154-70100173 | None:intergenic | 40.0% |
| CTGTATACTTTCTCGTACGA+GGG | - | chr3_1:70100321-70100340 | Msa0371880:intron | 40.0% | |
| AATGTCAGTGCTGTCAATTG+CGG | - | chr3_1:70100486-70100505 | Msa0371880:intron | 40.0% | |
| ! | TGCGGATTGCAAAAAATAGC+GGG | - | chr3_1:70100504-70100523 | Msa0371880:intron | 40.0% |
| !! | ATAGAGGAGCAGTAGTTTTG+TGG | + | chr3_1:70100549-70100568 | None:intergenic | 40.0% |
| TTGTCAAATAGCGGCTATAG+AGG | + | chr3_1:70100565-70100584 | None:intergenic | 40.0% | |
| CAGAAAAAGGGACTTCGTAA+AGG | - | chr3_1:70100612-70100631 | Msa0371880:intron | 40.0% | |
| AAGAATAGTAGGCTAGATGG+AGG | - | chr3_1:70100891-70100910 | Msa0371880:intron | 40.0% | |
| ATTTAACTCCGAGTTCTCAG+TGG | + | chr3_1:70100969-70100988 | None:intergenic | 40.0% | |
| ATGCTGCATCGTAACTAACA+AGG | - | chr3_1:70101053-70101072 | Msa0371880:intron | 40.0% | |
| TGCCTTAAGTGTAGTAGCTA+AGG | - | chr3_1:70101132-70101151 | Msa0371880:intron | 40.0% | |
| GACCTTAGCTACTACACTTA+AGG | + | chr3_1:70101137-70101156 | None:intergenic | 40.0% | |
| GGTGCTTACATGTGTGTATT+TGG | + | chr3_1:70101159-70101178 | None:intergenic | 40.0% | |
| TTGGGACATTAAAAGGTGGA+GGG | + | chr3_1:70101182-70101201 | None:intergenic | 40.0% | |
| ATTGGGACATTAAAAGGTGG+AGG | + | chr3_1:70101183-70101202 | None:intergenic | 40.0% | |
| ! | TCCACCTTTTAATGTCCCAA+TGG | - | chr3_1:70101182-70101201 | Msa0371880:intron | 40.0% |
| GCTTTAACCTTACAAGAGGA+TGG | + | chr3_1:70101225-70101244 | None:intergenic | 40.0% | |
| ! | GCAAGCTTTAACCTTACAAG+AGG | + | chr3_1:70101229-70101248 | None:intergenic | 40.0% |
| ATGGGAGCTAAAACTTTGAG+TGG | - | chr3_1:70101398-70101417 | Msa0371880:CDS | 40.0% | |
| !! | CTTTTGAAAGCTTTGACCCA+AGG | - | chr3_1:70101504-70101523 | Msa0371880:intron | 40.0% |
| TGGGCCAAAGCTTTCAAAAA+TGG | + | chr3_1:70101530-70101549 | None:intergenic | 40.0% | |
| !! | TTTTTGAAAGCTTTGGCCCA+AGG | - | chr3_1:70101530-70101549 | Msa0371880:intron | 40.0% |
| ATAGCTGAGAAAATGGCCTT+GGG | + | chr3_1:70101549-70101568 | None:intergenic | 40.0% | |
| TATAGCTGAGAAAATGGCCT+TGG | + | chr3_1:70101550-70101569 | None:intergenic | 40.0% | |
| AATTGATGCAGGCATGTTCA+AGG | - | chr3_1:70101632-70101651 | Msa0371880:CDS | 40.0% | |
| TTGTGCATTCTCGAGCAAAA+TGG | + | chr3_1:70101720-70101739 | None:intergenic | 40.0% | |
| GAGAATGCACAAGTTCTATC+AGG | - | chr3_1:70101728-70101747 | Msa0371880:intron | 40.0% | |
| TATCAGGGTACAATTGATGC+AGG | - | chr3_1:70101744-70101763 | Msa0371880:intron | 40.0% | |
| ! | CCTCTCCTCTTTGATTTCTT+AGG | + | chr3_1:70102155-70102174 | None:intergenic | 40.0% |
| CCTAAGAAATCAAAGAGGAG+AGG | - | chr3_1:70102152-70102171 | Msa0371880:CDS | 40.0% | |
| AAGAAATCAAAGAGGAGAGG+TGG | - | chr3_1:70102155-70102174 | Msa0371880:CDS | 40.0% | |
| AATCAAAAAGTAGAGGTGGC+TGG | - | chr3_1:70102228-70102247 | Msa0371880:intron | 40.0% | |
| CCTCTGCTCTTGAATTTCAT+GGG | + | chr3_1:70102431-70102450 | None:intergenic | 40.0% | |
| ACCTCTGCTCTTGAATTTCA+TGG | + | chr3_1:70102432-70102451 | None:intergenic | 40.0% | |
| ATGAAATTCAAGAGCAGAGG+TGG | - | chr3_1:70102431-70102450 | Msa0371880:intron | 40.0% | |
| TGGAAGAAGAGAATTCTCCA+GGG | + | chr3_1:70102472-70102491 | None:intergenic | 40.0% | |
| TTGGAAGAAGAGAATTCTCC+AGG | + | chr3_1:70102473-70102492 | None:intergenic | 40.0% | |
| TCTCTTCTTCCAAGTCCAAT+AGG | - | chr3_1:70102480-70102499 | Msa0371880:intron | 40.0% | |
| !! | GTTCTAAAATTTCTAGGGGG+TGG | - | chr3_1:70102588-70102607 | Msa0371880:intron | 40.0% |
| ! | TAAAATTTCTAGGGGGTGGA+TGG | - | chr3_1:70102592-70102611 | Msa0371880:intron | 40.0% |
| ! | AAAATTTCTAGGGGGTGGAT+GGG | - | chr3_1:70102593-70102612 | Msa0371880:intron | 40.0% |
| TTTGGCAACTCCAATGATGA+TGG | - | chr3_1:70102686-70102705 | Msa0371880:intron | 40.0% | |
| ACTCTAGTGGTGAAGGATAT+AGG | - | chr3_1:70102744-70102763 | Msa0371880:CDS | 40.0% | |
| GATATAGGAGAGGTAATTGG+TGG | - | chr3_1:70102759-70102778 | Msa0371880:CDS | 40.0% | |
| TTGCCACAAGTCTTTCAGTT+CGG | - | chr3_1:70102901-70102920 | Msa0371880:CDS | 40.0% | |
| CTGAGGTGTGCTGTAAGATT+AGG | - | chr3_1:70098505-70098524 | Msa0371880:three_prime_UTR | 45.0% | |
| !! | CGAGATTGTCGATTGATTCG+TGG | + | chr3_1:70098616-70098635 | None:intergenic | 45.0% |
| ACTCCTTCACTCGTATTCAG+CGG | - | chr3_1:70098647-70098666 | Msa0371880:three_prime_UTR | 45.0% | |
| AGATCTGAGTCTCAAGATCG+TGG | - | chr3_1:70098700-70098719 | Msa0371880:three_prime_UTR | 45.0% | |
| GTTTCGATTCTCGTGTTCGA+AGG | + | chr3_1:70098733-70098752 | None:intergenic | 45.0% | |
| ! | AGAAGCTCAGATTTCTGAGG+AGG | + | chr3_1:70098779-70098798 | None:intergenic | 45.0% |
| ! | CACTCTGATGCTGCCTTTTT+AGG | + | chr3_1:70099147-70099166 | None:intergenic | 45.0% |
| TTTAATGGCTGCAGAGCAAG+AGG | - | chr3_1:70099355-70099374 | Msa0371880:CDS | 45.0% | |
| GAAGCATGAATCTGTGGAAC+TGG | - | chr3_1:70099403-70099422 | Msa0371880:CDS | 45.0% | |
| GGATCAGATAGGTGACAACA+TGG | - | chr3_1:70099436-70099455 | Msa0371880:CDS | 45.0% | |
| ACCCAACTAAGCATTCCTTG+TGG | + | chr3_1:70099533-70099552 | None:intergenic | 45.0% | |
| TTGACCCTCCAGATAGTAGT+TGG | - | chr3_1:70099597-70099616 | Msa0371880:intron | 45.0% | |
| TGACCCTCCAGATAGTAGTT+GGG | - | chr3_1:70099598-70099617 | Msa0371880:intron | 45.0% | |
| ! | TGGGGAGCATGCTATAATTG+TGG | - | chr3_1:70099617-70099636 | Msa0371880:intron | 45.0% |
| AGCATGCTATAATTGTGGCG+AGG | - | chr3_1:70099622-70099641 | Msa0371880:intron | 45.0% | |
| TGCTATAATTGTGGCGAGGA+AGG | - | chr3_1:70099626-70099645 | Msa0371880:intron | 45.0% | |
| TAAACTGTACAGCAGCGAAG+CGG | - | chr3_1:70099660-70099679 | Msa0371880:intron | 45.0% | |
| AGGTATGTCTGCTTGCCTAT+TGG | - | chr3_1:70099738-70099757 | Msa0371880:CDS | 45.0% | |
| !! | GCTTGCCTATTGGCTTATGA+AGG | - | chr3_1:70099748-70099767 | Msa0371880:CDS | 45.0% |
| ! | GATCTGCTTGATGGTCATGT+AGG | - | chr3_1:70099791-70099810 | Msa0371880:CDS | 45.0% |
| AGTTGCTACGTCTGCAAGAA+AGG | - | chr3_1:70099819-70099838 | Msa0371880:CDS | 45.0% | |
| ! | TCTCTGGACAGTCTTTTGCA+CGG | + | chr3_1:70099851-70099870 | None:intergenic | 45.0% |
| ! | ACGGGCTTCTAAAAGTCTGA+CGG | - | chr3_1:70099884-70099903 | Msa0371880:CDS | 45.0% |
| ! | TCAGATGGGTCATACTGGTT+CGG | - | chr3_1:70100214-70100233 | Msa0371880:intron | 45.0% |
| ! | CCTCGTACGAGAAAGTATAC+AGG | + | chr3_1:70100323-70100342 | None:intergenic | 45.0% |
| CCTGTATACTTTCTCGTACG+AGG | - | chr3_1:70100320-70100339 | Msa0371880:intron | 45.0% | |
| GTCAAGCTGAAGCTTGATGT+AGG | - | chr3_1:70100747-70100766 | Msa0371880:intron | 45.0% | |
| ! | TGGTAGGGCCTTATCTTTGT+TGG | - | chr3_1:70100830-70100849 | Msa0371880:intron | 45.0% |
| !! | GGCCTTATCTTTGTTGGTTC+AGG | - | chr3_1:70100836-70100855 | Msa0371880:intron | 45.0% |
| AGTCCACTAGTTACACGTAG+AGG | - | chr3_1:70100916-70100935 | Msa0371880:intron | 45.0% | |
| GTCCACTAGTTACACGTAGA+GGG | - | chr3_1:70100917-70100936 | Msa0371880:intron | 45.0% | |
| TTCCCTCTACGTGTAACTAG+TGG | + | chr3_1:70100922-70100941 | None:intergenic | 45.0% | |
| TGGGACATTAAAAGGTGGAG+GGG | + | chr3_1:70101181-70101200 | None:intergenic | 45.0% | |
| GCCATTGGGACATTAAAAGG+TGG | + | chr3_1:70101186-70101205 | None:intergenic | 45.0% | |
| GATGGACACTGATAGCCATT+GGG | + | chr3_1:70101200-70101219 | None:intergenic | 45.0% | |
| ! | TGATGGACACTGATAGCCAT+TGG | + | chr3_1:70101201-70101220 | None:intergenic | 45.0% |
| CCTTACAAGAGGATGGTTGA+TGG | + | chr3_1:70101218-70101237 | None:intergenic | 45.0% | |
| CCATCAACCATCCTCTTGTA+AGG | - | chr3_1:70101215-70101234 | Msa0371880:intron | 45.0% | |
| CCTATAGCACAAAGTAGGTG+TGG | + | chr3_1:70101683-70101702 | None:intergenic | 45.0% | |
| CCACACCTACTTTGTGCTAT+AGG | - | chr3_1:70101680-70101699 | Msa0371880:CDS | 45.0% | |
| CCACACCTATAGCACAAAGT+AGG | + | chr3_1:70101688-70101707 | None:intergenic | 45.0% | |
| CCTACTTTGTGCTATAGGTG+TGG | - | chr3_1:70101685-70101704 | Msa0371880:CDS | 45.0% | |
| TTGTGCTATAGGTGTGGTGA+AGG | - | chr3_1:70101691-70101710 | Msa0371880:CDS | 45.0% | |
| TCAAAGTGAGACTACTGGTG+CGG | - | chr3_1:70101780-70101799 | Msa0371880:intron | 45.0% | |
| CCTATAGCACAAAGTAGGTG+TGG | + | chr3_1:70101683-70101702 | None:intergenic | 45.0% | |
| CCACACCTACTTTGTGCTAT+AGG | - | chr3_1:70101680-70101699 | Msa0371880:CDS | 45.0% | |
| CCACACCTATAGCACAAAGT+AGG | + | chr3_1:70101688-70101707 | None:intergenic | 45.0% | |
| CCTACTTTGTGCTATAGGTG+TGG | - | chr3_1:70101685-70101704 | Msa0371880:CDS | 45.0% | |
| TTGTGCTATAGGTGTGGTGA+AGG | - | chr3_1:70101691-70101710 | Msa0371880:CDS | 45.0% | |
| TGTGCTATAGGTGTGGTGAA+GGG | - | chr3_1:70101692-70101711 | Msa0371880:CDS | 45.0% | |
| AAGCCTCTTTCGTCTGTATG+AGG | + | chr3_1:70102125-70102144 | None:intergenic | 45.0% | |
| AATCTAAGAGTAGAGGTGGC+TGG | - | chr3_1:70102297-70102316 | Msa0371880:intron | 45.0% | |
| TCTGCTCTTCGATTTCTTGG+GGG | + | chr3_1:70102360-70102379 | None:intergenic | 45.0% | |
| CTCTGCTCTTCGATTTCTTG+GGG | + | chr3_1:70102361-70102380 | None:intergenic | 45.0% | |
| CCTCTGCTCTTCGATTTCTT+GGG | + | chr3_1:70102362-70102381 | None:intergenic | 45.0% | |
| ACCTCTGCTCTTCGATTTCT+TGG | + | chr3_1:70102363-70102382 | None:intergenic | 45.0% | |
| AAGAAATCGAAGAGCAGAGG+TGG | - | chr3_1:70102362-70102381 | Msa0371880:intron | 45.0% | |
| CCCATGAAATTCAAGAGCAG+AGG | - | chr3_1:70102428-70102447 | Msa0371880:intron | 45.0% | |
| CTGAAGCCTCATATTCCCAA+GGG | - | chr3_1:70102624-70102643 | Msa0371880:intron | 45.0% | |
| AGTAGTTCGGCATCAAGGTT+TGG | - | chr3_1:70102719-70102738 | Msa0371880:CDS | 45.0% | |
| TCAAGGTTTGGCAACTCTAG+TGG | - | chr3_1:70102731-70102750 | Msa0371880:CDS | 45.0% | |
| TTTGGCAACTCTAGTGGTGA+AGG | - | chr3_1:70102737-70102756 | Msa0371880:CDS | 45.0% | |
| AGTGGTGAAGGATATAGGAG+AGG | - | chr3_1:70102749-70102768 | Msa0371880:CDS | 45.0% | |
| TCCACCCTTCAGGAAGTAAT+GGG | - | chr3_1:70102924-70102943 | Msa0371880:CDS | 45.0% | |
| TACGCCCATTACTTCCTGAA+GGG | + | chr3_1:70102931-70102950 | None:intergenic | 45.0% | |
| TGGAACTCCGACCGAATTCT+AGG | - | chr3_1:70098545-70098564 | Msa0371880:three_prime_UTR | 50.0% | |
| AACTCCGACCGAATTCTAGG+CGG | - | chr3_1:70098548-70098567 | Msa0371880:three_prime_UTR | 50.0% | |
| GAAGGAGAAGTCGAAAGCCA+AGG | - | chr3_1:70098583-70098602 | Msa0371880:three_prime_UTR | 50.0% | |
| TGATTCGTGGTCTCTTGCCT+TGG | + | chr3_1:70098603-70098622 | None:intergenic | 50.0% | |
| GCTGAATACGAGTGAAGGAG+TGG | + | chr3_1:70098648-70098667 | None:intergenic | 50.0% | |
| AGGTAAAACGGCGTCGTTAG+AGG | + | chr3_1:70098759-70098778 | None:intergenic | 50.0% | |
| CACCCACTTGGAGAATCACT+TGG | - | chr3_1:70099297-70099316 | Msa0371880:CDS | 50.0% | |
| GAAGCGAGTGTGGATCAGAT+AGG | - | chr3_1:70099425-70099444 | Msa0371880:CDS | 50.0% | |
| GACCCTCCAGATAGTAGTTG+GGG | - | chr3_1:70099599-70099618 | Msa0371880:intron | 50.0% | |
| CTCCCCAACTACTATCTGGA+GGG | + | chr3_1:70099604-70099623 | None:intergenic | 50.0% | |
| CATGCTCCCCAACTACTATC+TGG | + | chr3_1:70099608-70099627 | None:intergenic | 50.0% | |
| TCTTGCAGACGTAGCAACTC+TGG | + | chr3_1:70099818-70099837 | None:intergenic | 50.0% | |
| TGCTACGTCTGCAAGAAAGG+TGG | - | chr3_1:70099822-70099841 | Msa0371880:CDS | 50.0% | |
| ! | CAGAGAAGCACATGACTGCA+CGG | - | chr3_1:70099865-70099884 | Msa0371880:CDS | 50.0% |
| ! | AGAGAAGCACATGACTGCAC+GGG | - | chr3_1:70099866-70099885 | Msa0371880:CDS | 50.0% |
| CTGACGGTATGCTTGAAGTG+TGG | - | chr3_1:70099900-70099919 | Msa0371880:intron | 50.0% | |
| CAATGCTGCTGATGCAACAC+CGG | - | chr3_1:70100166-70100185 | Msa0371880:intron | 50.0% | |
| AATGCTGCTGATGCAACACC+GGG | - | chr3_1:70100167-70100186 | Msa0371880:intron | 50.0% | |
| TGTGGTCAGATGGGTCATAC+TGG | - | chr3_1:70100209-70100228 | Msa0371880:intron | 50.0% | |
| TATGCACCTTTCCGGAGATC+CGG | - | chr3_1:70100259-70100278 | Msa0371880:intron | 50.0% | |
| TTATCTCCGGATCTCCGGAA+AGG | + | chr3_1:70100268-70100287 | None:intergenic | 50.0% | |
| GATGCTTATCTCCGGATCTC+CGG | + | chr3_1:70100273-70100292 | None:intergenic | 50.0% | |
| !!! | GGAGCAGTAGTTTTGTGGCA+TGG | + | chr3_1:70100544-70100563 | None:intergenic | 50.0% |
| !! | CCTGGTATTGGTAACCGTAG+CGG | - | chr3_1:70100723-70100742 | Msa0371880:intron | 50.0% |
| AGGTCGAACCACTGAGAACT+CGG | - | chr3_1:70100958-70100977 | Msa0371880:intron | 50.0% | |
| GGGACATTAAAAGGTGGAGG+GGG | + | chr3_1:70101180-70101199 | None:intergenic | 50.0% | |
| CAGGCATGTTCAAGGTTGCA+AGG | - | chr3_1:70101640-70101659 | Msa0371880:CDS | 50.0% | |
| AGGTTGCAAGGTGAGACTAC+TGG | - | chr3_1:70101652-70101671 | Msa0371880:CDS | 50.0% | |
| TGCTATAGGTGTGGTGAAGG+AGG | - | chr3_1:70101694-70101713 | Msa0371880:CDS | 50.0% | |
| GTGCTATAGGTGTGGTGAAG+GGG | - | chr3_1:70101693-70101712 | Msa0371880:CDS | 50.0% | |
| TGCTATAGGTGTGGTGAAGG+GGG | - | chr3_1:70101694-70101713 | Msa0371880:CDS | 50.0% | |
| ! | ACTTCCGTGTTTTCCTCCAC+AGG | - | chr3_1:70101980-70101999 | Msa0371880:intron | 50.0% |
| CTATTCTTCTTCCCAGCCTG+TGG | + | chr3_1:70101999-70102018 | None:intergenic | 50.0% | |
| TTGGTCTGCACCTCTCGATA+TGG | - | chr3_1:70102076-70102095 | Msa0371880:intron | 50.0% | |
| TGGTCTGCACCTCTCGATAT+GGG | - | chr3_1:70102077-70102096 | Msa0371880:intron | 50.0% | |
| ! | TGCGTTTTGCCCATATCGAG+AGG | + | chr3_1:70102089-70102108 | None:intergenic | 50.0% |
| AATCAAAGAGGAGAGGTGGC+TGG | - | chr3_1:70102159-70102178 | Msa0371880:CDS | 50.0% | |
| AAGTAGAGGTGGCTGGACAA+TGG | - | chr3_1:70102235-70102254 | Msa0371880:intron | 50.0% | |
| TAAGAGTAGAGGTGGCTGGA+CGG | - | chr3_1:70102301-70102320 | Msa0371880:intron | 50.0% | |
| CCCAAGAAATCGAAGAGCAG+AGG | - | chr3_1:70102359-70102378 | Msa0371880:intron | 50.0% | |
| AATTCAAGAGCAGAGGTGGC+TGG | - | chr3_1:70102435-70102454 | Msa0371880:intron | 50.0% | |
| CCAACTGGTCCTATTGGACT+TGG | + | chr3_1:70102492-70102511 | None:intergenic | 50.0% | |
| CCAAGTCCAATAGGACCAGT+TGG | - | chr3_1:70102489-70102508 | Msa0371880:intron | 50.0% | |
| AGGACTCCAACTGGTCCTAT+TGG | + | chr3_1:70102498-70102517 | None:intergenic | 50.0% | |
| CCTTGGGAATATGAGGCTTC+AGG | + | chr3_1:70102626-70102645 | None:intergenic | 50.0% | |
| CCTGAAGCCTCATATTCCCA+AGG | - | chr3_1:70102623-70102642 | Msa0371880:intron | 50.0% | |
| GGAGAAGTAGTTCGGCATCA+AGG | - | chr3_1:70102714-70102733 | Msa0371880:CDS | 50.0% | |
| GGACCGAACTGAAAGACTTG+TGG | + | chr3_1:70102907-70102926 | None:intergenic | 50.0% | |
| GTCCACCCTTCAGGAAGTAA+TGG | - | chr3_1:70102923-70102942 | Msa0371880:CDS | 50.0% | |
| GTACGCCCATTACTTCCTGA+AGG | + | chr3_1:70102932-70102951 | None:intergenic | 50.0% | |
| CATGCCGCCTAGAATTCGGT+CGG | + | chr3_1:70098555-70098574 | None:intergenic | 55.0% | |
| GACCGAATTCTAGGCGGCAT+GGG | - | chr3_1:70098554-70098573 | Msa0371880:three_prime_UTR | 55.0% | |
| CTCCCATGCCGCCTAGAATT+CGG | + | chr3_1:70098559-70098578 | None:intergenic | 55.0% | |
| GAATTCTAGGCGGCATGGGA+GGG | - | chr3_1:70098558-70098577 | Msa0371880:three_prime_UTR | 55.0% | |
| CTGCCGCTGAATACGAGTGA+AGG | + | chr3_1:70098653-70098672 | None:intergenic | 55.0% | |
| AATGGCTGCAGAGCAAGAGG+TGG | - | chr3_1:70099358-70099377 | Msa0371880:CDS | 55.0% | |
| TGTGGAACTGGAAGCGAGTG+TGG | - | chr3_1:70099415-70099434 | Msa0371880:CDS | 55.0% | |
| GCTCCCCAACTACTATCTGG+AGG | + | chr3_1:70099605-70099624 | None:intergenic | 55.0% | |
| CGTGCAGTCATGTGCTTCTC+TGG | + | chr3_1:70099867-70099886 | None:intergenic | 55.0% | |
| CCGCTACGGTTACCAATACC+AGG | + | chr3_1:70100726-70100745 | None:intergenic | 55.0% | |
| GCTTCAGCTTGACTCCGCTA+CGG | + | chr3_1:70100740-70100759 | None:intergenic | 55.0% | |
| CCAGCCTGTGGAGGAAAACA+CGG | + | chr3_1:70101987-70102006 | None:intergenic | 55.0% | |
| ! | CGTGTTTTCCTCCACAGGCT+GGG | - | chr3_1:70101985-70102004 | Msa0371880:intron | 55.0% |
| TTCTTCTTCCCAGCCTGTGG+AGG | + | chr3_1:70101996-70102015 | None:intergenic | 55.0% | |
| CGGCCTCATACAGACGAAAG+AGG | - | chr3_1:70102119-70102138 | Msa0371880:CDS | 55.0% | |
| AAGAGTAGAGGTGGCTGGAC+GGG | - | chr3_1:70102302-70102321 | Msa0371880:intron | 55.0% | |
| AATCGAAGAGCAGAGGTGGC+TGG | - | chr3_1:70102366-70102385 | Msa0371880:intron | 55.0% | |
| TAGGACCAGTTGGAGTCCTG+CGG | - | chr3_1:70102499-70102518 | Msa0371880:intron | 55.0% | |
| !! | GGTAGTGGAAGTCGAACTCC+AGG | - | chr3_1:70102560-70102579 | Msa0371880:intron | 55.0% |
| GTGGAAGTCGAACTCCAGGT+TGG | - | chr3_1:70102564-70102583 | Msa0371880:intron | 55.0% | |
| GGCTGACCCTTGGGAATATG+AGG | + | chr3_1:70102633-70102652 | None:intergenic | 55.0% | |
| !! | GAAAGCATCGGCTGACCCTT+GGG | + | chr3_1:70102642-70102661 | None:intergenic | 55.0% |
| TTCAGTTCGGTCCACCCTTC+AGG | - | chr3_1:70102914-70102933 | Msa0371880:CDS | 55.0% | |
| GCCCATTACTTCCTGAAGGG+TGG | + | chr3_1:70102928-70102947 | None:intergenic | 55.0% | |
| CGACCGAATTCTAGGCGGCA+TGG | - | chr3_1:70098553-70098572 | Msa0371880:three_prime_UTR | 60.0% | |
| CGAATTCTAGGCGGCATGGG+AGG | - | chr3_1:70098557-70098576 | Msa0371880:three_prime_UTR | 60.0% | |
| CGAGTGAAGGAGTGGAAGCG+CGG | + | chr3_1:70098640-70098659 | None:intergenic | 60.0% | |
| ! | CCGTGTTTTCCTCCACAGGC+TGG | - | chr3_1:70101984-70102003 | Msa0371880:intron | 60.0% |
| GAGGAGAGGTGGCTGGATGA+CGG | - | chr3_1:70102166-70102185 | Msa0371880:CDS | 60.0% | |
| AGAGTAGAGGTGGCTGGACG+GGG | - | chr3_1:70102303-70102322 | Msa0371880:intron | 60.0% | |
| GAGCAGAGGTGGCTGGACAA+TGG | - | chr3_1:70102373-70102392 | Msa0371880:intron | 60.0% | |
| CAAGAGCAGAGGTGGCTGGA+TGG | - | chr3_1:70102439-70102458 | Msa0371880:intron | 60.0% | |
| AGGACCAGTTGGAGTCCTGC+GGG | - | chr3_1:70102500-70102519 | Msa0371880:intron | 60.0% | |
| !! | GGAAAGCATCGGCTGACCCT+TGG | + | chr3_1:70102643-70102662 | None:intergenic | 60.0% |
| TTCTAGGCGGCATGGGAGGG+AGG | - | chr3_1:70098561-70098580 | Msa0371880:three_prime_UTR | 65.0% | |
| GAGTAGAGGTGGCTGGACGG+GGG | - | chr3_1:70102304-70102323 | Msa0371880:intron | 65.0% | |
| GGCTGGATGGCTGATCACCC+TGG | - | chr3_1:70102452-70102471 | Msa0371880:intron | 65.0% | |
| GGACCAGTTGGAGTCCTGCG+GGG | - | chr3_1:70102501-70102520 | Msa0371880:intron | 65.0% | |
| TGTCCCCGCAGGACTCCAAC+TGG | + | chr3_1:70102507-70102526 | None:intergenic | 65.0% | |
| CTAGCAGATGGTGTCCCCGC+AGG | + | chr3_1:70102518-70102537 | None:intergenic | 65.0% | |
| AGGCGGCATGGGAGGGAGGA+AGG | - | chr3_1:70098565-70098584 | Msa0371880:three_prime_UTR | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 70098446 | 70103108 | 70098446 | ID=Msa0371880;Name=Msa0371880 |
| chr3_1 | mRNA | 70098446 | 70103108 | 70098446 | ID=Msa0371880-mRNA-1;Parent=Msa0371880;Name=Msa0371880-mRNA-1;_AED=0.06;_eAED=0.06;_QI=126|1|1|1|1|1|7|324|616 |
| chr3_1 | exon | 70098446 | 70099552 | 70098446 | ID=Msa0371880-mRNA-1:exon:15158;Parent=Msa0371880-mRNA-1 |
| chr3_1 | exon | 70099681 | 70099911 | 70099681 | ID=Msa0371880-mRNA-1:exon:15157;Parent=Msa0371880-mRNA-1 |
| chr3_1 | exon | 70101319 | 70101435 | 70101319 | ID=Msa0371880-mRNA-1:exon:15156;Parent=Msa0371880-mRNA-1 |
| chr3_1 | exon | 70101574 | 70101741 | 70101574 | ID=Msa0371880-mRNA-1:exon:15155;Parent=Msa0371880-mRNA-1 |
| chr3_1 | exon | 70101815 | 70101973 | 70101815 | ID=Msa0371880-mRNA-1:exon:15154;Parent=Msa0371880-mRNA-1 |
| chr3_1 | exon | 70102079 | 70102201 | 70102079 | ID=Msa0371880-mRNA-1:exon:15153;Parent=Msa0371880-mRNA-1 |
| chr3_1 | exon | 70102713 | 70103108 | 70102713 | ID=Msa0371880-mRNA-1:exon:15152;Parent=Msa0371880-mRNA-1 |
| chr3_1 | five_prime_UTR | 70102983 | 70103108 | 70102983 | ID=Msa0371880-mRNA-1:five_prime_utr;Parent=Msa0371880-mRNA-1 |
| chr3_1 | CDS | 70102713 | 70102982 | 70102713 | ID=Msa0371880-mRNA-1:cds;Parent=Msa0371880-mRNA-1 |
| chr3_1 | CDS | 70102079 | 70102201 | 70102079 | ID=Msa0371880-mRNA-1:cds;Parent=Msa0371880-mRNA-1 |
| chr3_1 | CDS | 70101815 | 70101973 | 70101815 | ID=Msa0371880-mRNA-1:cds;Parent=Msa0371880-mRNA-1 |
| chr3_1 | CDS | 70101574 | 70101741 | 70101574 | ID=Msa0371880-mRNA-1:cds;Parent=Msa0371880-mRNA-1 |
| chr3_1 | CDS | 70101319 | 70101435 | 70101319 | ID=Msa0371880-mRNA-1:cds;Parent=Msa0371880-mRNA-1 |
| chr3_1 | CDS | 70099681 | 70099911 | 70099681 | ID=Msa0371880-mRNA-1:cds;Parent=Msa0371880-mRNA-1 |
| chr3_1 | CDS | 70098770 | 70099552 | 70098770 | ID=Msa0371880-mRNA-1:cds;Parent=Msa0371880-mRNA-1 |
| chr3_1 | three_prime_UTR | 70098446 | 70098769 | 70098446 | ID=Msa0371880-mRNA-1:three_prime_utr;Parent=Msa0371880-mRNA-1 |
| Gene Sequence |
| Protein sequence |
