Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1260650 | RHN63793.1 | 60.000 | 60 | 13 | 2 | 73 | 132 | 2 | 50 | 1.41e-12 | 72.0 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1260650 | A0A396IGM7 | 60.000 | 60 | 13 | 2 | 73 | 132 | 2 | 50 | 6.73e-13 | 72.0 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1214200 | Msa1260650 | 0.854605 | 1.101179e-61 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1260650 | MtrunA17_Chr4g0062151 | 60.000 | 60 | 13 | 2 | 73 | 132 | 2 | 50 | 1.30e-16 | 72.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 40 sgRNAs with CRISPR-Local
Find 138 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAACTGTTGGTTTGGAAAT+TGG | 0.181705 | 8_2:-62684877 | None:intergenic |
| CCCTTTGTTCTCCTTACTTT+TGG | 0.183239 | 8_2:-62683419 | None:intergenic |
| CATCTTAAGGCAAGTTCTTC+TGG | 0.193097 | 8_2:+62684762 | Msa1260650:CDS |
| GTTGCTAAGAAACAAGAATT+AGG | 0.231022 | 8_2:+62683491 | Msa1260650:CDS |
| TGGTTTGGAAATTGGTATTA+TGG | 0.263805 | 8_2:-62684869 | None:intergenic |
| ATCGGTTTGAACGTCAAATA+AGG | 0.323259 | 8_2:-62683530 | None:intergenic |
| TTCTCGAGAAACTGTTGGTT+TGG | 0.333622 | 8_2:-62684884 | None:intergenic |
| ACATCAGTTGTGGTCTCTAC+TGG | 0.366276 | 8_2:+62682789 | Msa1260650:intron |
| TTGCTAAGAAACAAGAATTA+GGG | 0.371064 | 8_2:+62683492 | Msa1260650:CDS |
| ATTCTTGCTAAGAAGCAAAA+AGG | 0.376689 | 8_2:+62683551 | Msa1260650:CDS |
| ATGTACATTGGAGCATTCTC+TGG | 0.386139 | 8_2:-62685132 | None:intergenic |
| CAATCACACGTATGAGGAAT+AGG | 0.388822 | 8_2:-62684729 | None:intergenic |
| TTGTTTGATTCAACTGCTGC+TGG | 0.414944 | 8_2:-62682826 | None:intergenic |
| AAATCTTAACTATGTTTATG+AGG | 0.426663 | 8_2:+62684785 | Msa1260650:CDS |
| GAATGCGTAACTTATGTTGT+TGG | 0.453472 | 8_2:+62685109 | Msa1260650:three_prime_UTR |
| TCGTTTGATGTACAAGAAGA+AGG | 0.478336 | 8_2:+62684038 | Msa1260650:CDS |
| CATGAGTTGATGAAATAAGT+TGG | 0.481677 | 8_2:+62684960 | Msa1260650:exon |
| TTGCTACAAGATGCATCTTA+AGG | 0.483577 | 8_2:+62684749 | Msa1260650:CDS |
| TTGCTAAGAAGCCAAAAGTA+AGG | 0.498527 | 8_2:+62683408 | Msa1260650:CDS |
| TAAAATTTAGAAACGTGATC+GGG | 0.503203 | 8_2:-62682498 | None:intergenic |
| AAAGGAGAAGGAAGAGTTGG+AGG | 0.503994 | 8_2:+62684913 | Msa1260650:CDS |
| AAGTACTTTCAATTATAAGT+TGG | 0.512591 | 8_2:+62685024 | Msa1260650:three_prime_UTR |
| CCAAAAGTAAGGAGAACAAA+GGG | 0.514005 | 8_2:+62683419 | Msa1260650:CDS |
| TTAAAATTTAGAAACGTGAT+CGG | 0.514349 | 8_2:-62682499 | None:intergenic |
| TATTTCAAAAGCAATGCTAA+AGG | 0.514614 | 8_2:-62684808 | None:intergenic |
| AAGCATTCTCGAGAAACTGT+TGG | 0.516388 | 8_2:-62684889 | None:intergenic |
| TTGTAGCAATCACACGTATG+AGG | 0.521163 | 8_2:-62684735 | None:intergenic |
| CGAGAATGCTTCAAAGGAGA+AGG | 0.534249 | 8_2:+62684901 | Msa1260650:CDS |
| ATGAGGAATAGGTATCCATC+TGG | 0.534434 | 8_2:-62684718 | None:intergenic |
| TTCAAAGGAGAAGGAAGAGT+TGG | 0.536101 | 8_2:+62684910 | Msa1260650:CDS |
| GTTGGAATCATGTGTGTTAG+TGG | 0.550853 | 8_2:+62685042 | Msa1260650:three_prime_UTR |
| GCCAAAAGTAAGGAGAACAA+AGG | 0.559126 | 8_2:+62683418 | Msa1260650:CDS |
| GTTTCTCGAGAATGCTTCAA+AGG | 0.559657 | 8_2:+62684895 | Msa1260650:CDS |
| CGTTTGATGTACAAGAAGAA+GGG | 0.561147 | 8_2:+62684039 | Msa1260650:CDS |
| TTGGAATCATGTGTGTTAGT+GGG | 0.612370 | 8_2:+62685043 | Msa1260650:three_prime_UTR |
| TGCTAAGAAACAAGAATTAG+GGG | 0.623852 | 8_2:+62683493 | Msa1260650:CDS |
| AAATGTCTAAGTATGCCAGA+TGG | 0.629384 | 8_2:+62684703 | Msa1260650:CDS |
| GGCTGATATTGATAGTGATG+TGG | 0.690460 | 8_2:+62684934 | Msa1260650:CDS |
| GCTAAGAAACAAGAATTAGG+GGG | 0.701793 | 8_2:+62683494 | Msa1260650:CDS |
| AACAAAGGGAAATATTCGTG+TGG | 0.703899 | 8_2:+62683433 | Msa1260650:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTCTATTTTTTTTTTTTTTG+TGG | + | chr8_2:62683840-62683859 | Msa1260650:intron | 10.0% |
| !! | AAGAACAAAAAAATTTAAAG+CGG | - | chr8_2:62682767-62682786 | None:intergenic | 15.0% |
| !! | TATAATAATAGAGAATGAAA+TGG | - | chr8_2:62683206-62683225 | None:intergenic | 15.0% |
| !! | TTGAAAAATAAAAAATGGAA+AGG | - | chr8_2:62683290-62683309 | None:intergenic | 15.0% |
| !! | TATGGTTGAAAAATAAAAAA+TGG | - | chr8_2:62683295-62683314 | None:intergenic | 15.0% |
| !! | GATCAAATAAAAAATCAAAA+GGG | - | chr8_2:62683332-62683351 | None:intergenic | 15.0% |
| !! | TGATCAAATAAAAAATCAAA+AGG | - | chr8_2:62683333-62683352 | None:intergenic | 15.0% |
| !! | AAAAAAAAAAAATAGAAGAC+AGG | - | chr8_2:62683837-62683856 | None:intergenic | 15.0% |
| !!! | TTTTATCAAATAAGAAATGA+AGG | - | chr8_2:62683925-62683944 | None:intergenic | 15.0% |
| !! | TTATAAAATGACTTACAATT+TGG | + | chr8_2:62684513-62684532 | Msa1260650:intron | 15.0% |
| !! | CTTATTAAAAACTACTATTA+CGG | - | chr8_2:62684991-62685010 | None:intergenic | 15.0% |
| !! | TTAAAATTTAGAAACGTGAT+CGG | - | chr8_2:62682502-62682521 | None:intergenic | 20.0% |
| !!! | ACGTTTCTAAATTTTAATTC+TGG | + | chr8_2:62682505-62682524 | Msa1260650:five_prime_UTR | 20.0% |
| !!! | TTCTAAATTTTAATTCTGGT+TGG | + | chr8_2:62682509-62682528 | Msa1260650:intron | 20.0% |
| !!! | TTAATCTTTTCTGAAATTGT+TGG | + | chr8_2:62682661-62682680 | Msa1260650:intron | 20.0% |
| !!! | TAATCTTTTCTGAAATTGTT+GGG | + | chr8_2:62682662-62682681 | Msa1260650:intron | 20.0% |
| !! | TAAAAACATTCAACAGAATT+TGG | + | chr8_2:62683940-62683959 | Msa1260650:intron | 20.0% |
| !! | AAAAACAACAAAAATGAAGT+CGG | + | chr8_2:62683979-62683998 | Msa1260650:CDS | 20.0% |
| !! | AGAGAATATTAAAAAGTGAA+GGG | + | chr8_2:62684455-62684474 | Msa1260650:intron | 20.0% |
| !! | AAGAGTTAGATAATTTCATA+TGG | - | chr8_2:62684652-62684671 | None:intergenic | 20.0% |
| !! | AAATCTTAACTATGTTTATG+AGG | + | chr8_2:62684785-62684804 | Msa1260650:CDS | 20.0% |
| !!! | CGTAATAGTAGTTTTTAATA+AGG | + | chr8_2:62684989-62685008 | Msa1260650:three_prime_UTR | 20.0% |
| !! | AAGTACTTTCAATTATAAGT+TGG | + | chr8_2:62685024-62685043 | Msa1260650:three_prime_UTR | 20.0% |
| ! | TAAAATTTAGAAACGTGATC+GGG | - | chr8_2:62682501-62682520 | None:intergenic | 25.0% |
| ! | TTGGTTTCTTCTTCTTAATT+GGG | + | chr8_2:62682528-62682547 | Msa1260650:intron | 25.0% |
| !!! | AATCTTTTCTGAAATTGTTG+GGG | + | chr8_2:62682663-62682682 | Msa1260650:intron | 25.0% |
| ! | TTGAATCAAACAAGCAAAAA+TGG | + | chr8_2:62682836-62682855 | Msa1260650:exon | 25.0% |
| ! | TGAATCAAACAAGCAAAAAT+GGG | + | chr8_2:62682837-62682856 | Msa1260650:exon | 25.0% |
| ! | ATGTTAACCAAGATGAAAAA+AGG | - | chr8_2:62682874-62682893 | None:intergenic | 25.0% |
| ! | GTAAATCATATCATAACAGA+TGG | - | chr8_2:62682906-62682925 | None:intergenic | 25.0% |
| ! | AAAAGAATTGTATCTTCACA+TGG | - | chr8_2:62682944-62682963 | None:intergenic | 25.0% |
| ! | AATAAAAAATCAAAAGGGTG+AGG | - | chr8_2:62683327-62683346 | None:intergenic | 25.0% |
| ! | TTGCTAAGAAACAAGAATTA+GGG | + | chr8_2:62683492-62683511 | Msa1260650:CDS | 25.0% |
| ! | GAGATAATAGAGAATGAAAT+GGG | - | chr8_2:62683809-62683828 | None:intergenic | 25.0% |
| !!! | AAGGCAAGGTTATTTTAATA+TGG | - | chr8_2:62683906-62683925 | None:intergenic | 25.0% |
| ! | TCAATCTAAATCATAACAGA+TGG | - | chr8_2:62684156-62684175 | None:intergenic | 25.0% |
| ! | CATATTAACATTCAATCAAG+AGG | - | chr8_2:62684236-62684255 | None:intergenic | 25.0% |
| ! | GTTAATATGCACATTTATCT+TGG | + | chr8_2:62684247-62684266 | Msa1260650:intron | 25.0% |
| ! | AAACAACTTATCATTTGGAA+TGG | - | chr8_2:62684318-62684337 | None:intergenic | 25.0% |
| ! | AGTCAAAACAACTTATCATT+TGG | - | chr8_2:62684323-62684342 | None:intergenic | 25.0% |
| ! | GAGAGAATATTAAAAAGTGA+AGG | + | chr8_2:62684454-62684473 | Msa1260650:intron | 25.0% |
| ! | CTCAAAGCTACTTATAATTT+CGG | + | chr8_2:62684549-62684568 | Msa1260650:intron | 25.0% |
| !!! | GATGTCTTCTATTTTGTTTT+TGG | + | chr8_2:62684590-62684609 | Msa1260650:intron | 25.0% |
| ! | ACTTACAAAAGAAAAAGATG+AGG | - | chr8_2:62684624-62684643 | None:intergenic | 25.0% |
| ! | TATTTCAAAAGCAATGCTAA+AGG | - | chr8_2:62684811-62684830 | None:intergenic | 25.0% |
| ! | GTTGGTTTCTTCTTCTTAAT+TGG | + | chr8_2:62682527-62682546 | Msa1260650:intron | 30.0% |
| GCAACAAAAAATAAGAGTCA+TGG | - | chr8_2:62682619-62682638 | None:intergenic | 30.0% | |
| !!! | TCAATCACCTTTTTTCATCT+TGG | + | chr8_2:62682864-62682883 | Msa1260650:intron | 30.0% |
| !!! | CACATGGTTTTAAACTCATA+AGG | - | chr8_2:62682928-62682947 | None:intergenic | 30.0% |
| CAAACAACAGAATAGAAGAA+CGG | - | chr8_2:62683236-62683255 | None:intergenic | 30.0% | |
| !!! | AGGGTGAGGTTATTTTAATA+TGG | - | chr8_2:62683313-62683332 | None:intergenic | 30.0% |
| GTTGCTAAGAAACAAGAATT+AGG | + | chr8_2:62683491-62683510 | Msa1260650:CDS | 30.0% | |
| TGCTAAGAAACAAGAATTAG+GGG | + | chr8_2:62683493-62683512 | Msa1260650:CDS | 30.0% | |
| ! | TTTTGCTTCTTAGCAAGAAT+CGG | - | chr8_2:62683551-62683570 | None:intergenic | 30.0% |
| ATTCTTGCTAAGAAGCAAAA+AGG | + | chr8_2:62683551-62683570 | Msa1260650:CDS | 30.0% | |
| AAAACGTGAATCATAACAGA+TGG | - | chr8_2:62683659-62683678 | None:intergenic | 30.0% | |
| GGAGATAATAGAGAATGAAA+TGG | - | chr8_2:62683810-62683829 | None:intergenic | 30.0% | |
| AAAAAATAGAAGACAGGCAT+AGG | - | chr8_2:62683831-62683850 | None:intergenic | 30.0% | |
| TCAAATAAGAAATGAAGGCA+AGG | - | chr8_2:62683920-62683939 | None:intergenic | 30.0% | |
| TCTAAATCATAACAGATGGA+TGG | - | chr8_2:62684152-62684171 | None:intergenic | 30.0% | |
| AGGTTGCATTTCTATAAAAC+AGG | - | chr8_2:62684216-62684235 | None:intergenic | 30.0% | |
| AATGGATGGAGCAATTAAAT+GGG | - | chr8_2:62684300-62684319 | None:intergenic | 30.0% | |
| ! | AACTTATCATTTGGAATGGA+TGG | - | chr8_2:62684314-62684333 | None:intergenic | 30.0% |
| TTGTCCTTCATTAATGCTAT+AGG | + | chr8_2:62684404-62684423 | Msa1260650:intron | 30.0% | |
| TGTCCTTCATTAATGCTATA+GGG | + | chr8_2:62684405-62684424 | Msa1260650:intron | 30.0% | |
| TTTCCCTATAGCATTAATGA+AGG | - | chr8_2:62684411-62684430 | None:intergenic | 30.0% | |
| ! | TAAAAAGTGAAGGGTATAAC+AGG | + | chr8_2:62684464-62684483 | Msa1260650:intron | 30.0% |
| AAGCTACTTATAATTTCGGA+CGG | + | chr8_2:62684553-62684572 | Msa1260650:intron | 30.0% | |
| ! | TGGTTTGGAAATTGGTATTA+TGG | - | chr8_2:62684872-62684891 | None:intergenic | 30.0% |
| !! | CATGAGTTGATGAAATAAGT+TGG | + | chr8_2:62684960-62684979 | Msa1260650:exon | 30.0% |
| !! | TTCTGAAATTGTTGGGGATT+AGG | + | chr8_2:62682669-62682688 | Msa1260650:intron | 35.0% |
| ! | TCTGAAATTGTTGGGGATTA+GGG | + | chr8_2:62682670-62682689 | Msa1260650:intron | 35.0% |
| TTGTTCTTTCACATCAGTTG+TGG | + | chr8_2:62682779-62682798 | Msa1260650:intron | 35.0% | |
| ! | TTGCATTTTCAAACCCACTT+GGG | - | chr8_2:62683123-62683142 | None:intergenic | 35.0% |
| CATACTAACACTCAATCAAG+AGG | - | chr8_2:62683146-62683165 | None:intergenic | 35.0% | |
| GTGTTAGTATGCACATAAGT+TGG | + | chr8_2:62683155-62683174 | Msa1260650:intron | 35.0% | |
| ATGGAAAGGCTTAAAAGACA+AGG | - | chr8_2:62683276-62683295 | None:intergenic | 35.0% | |
| TTGCTAAGAAGCCAAAAGTA+AGG | + | chr8_2:62683408-62683427 | Msa1260650:CDS | 35.0% | |
| CCAAAAGTAAGGAGAACAAA+GGG | + | chr8_2:62683419-62683438 | Msa1260650:CDS | 35.0% | |
| AACAAAGGGAAATATTCGTG+TGG | + | chr8_2:62683433-62683452 | Msa1260650:CDS | 35.0% | |
| GCTAAGAAACAAGAATTAGG+GGG | + | chr8_2:62683494-62683513 | Msa1260650:CDS | 35.0% | |
| !! | ATCGGTTTGAACGTCAAATA+AGG | - | chr8_2:62683533-62683552 | None:intergenic | 35.0% |
| ! | TGTTTTACTCGATGCTGTAA+TGG | + | chr8_2:62683582-62683601 | Msa1260650:intron | 35.0% |
| ATGTTCTTTGCAGTTACGTT+AGG | + | chr8_2:62683614-62683633 | Msa1260650:intron | 35.0% | |
| TCGGTAAGAAGCAAAAAGTA+AGG | + | chr8_2:62683998-62684017 | Msa1260650:CDS | 35.0% | |
| TCGTTTGATGTACAAGAAGA+AGG | + | chr8_2:62684038-62684057 | Msa1260650:CDS | 35.0% | |
| CGTTTGATGTACAAGAAGAA+GGG | + | chr8_2:62684039-62684058 | Msa1260650:CDS | 35.0% | |
| !! | TGGGCTGAATTTCTAAAGTA+TGG | - | chr8_2:62684281-62684300 | None:intergenic | 35.0% |
| GAATGGATGGAGCAATTAAA+TGG | - | chr8_2:62684301-62684320 | None:intergenic | 35.0% | |
| AGCTACTTATAATTTCGGAC+GGG | + | chr8_2:62684554-62684573 | Msa1260650:intron | 35.0% | |
| AAATGTCTAAGTATGCCAGA+TGG | + | chr8_2:62684703-62684722 | Msa1260650:CDS | 35.0% | |
| TTGCTACAAGATGCATCTTA+AGG | + | chr8_2:62684749-62684768 | Msa1260650:CDS | 35.0% | |
| !! | GAAACTGTTGGTTTGGAAAT+TGG | - | chr8_2:62684880-62684899 | None:intergenic | 35.0% |
| TTGGAATCATGTGTGTTAGT+GGG | + | chr8_2:62685043-62685062 | Msa1260650:three_prime_UTR | 35.0% | |
| GAATGCGTAACTTATGTTGT+TGG | + | chr8_2:62685109-62685128 | Msa1260650:three_prime_UTR | 35.0% | |
| TTGTTTGATTCAACTGCTGC+TGG | - | chr8_2:62682829-62682848 | None:intergenic | 40.0% | |
| ! | ATTCTCACCGGTGTCAATTT+AGG | - | chr8_2:62683039-62683058 | None:intergenic | 40.0% |
| ATCTCAAGTTCGATTCTCAC+CGG | - | chr8_2:62683051-62683070 | None:intergenic | 40.0% | |
| GAATCGAACTTGAGATCTCA+AGG | + | chr8_2:62683055-62683074 | Msa1260650:intron | 40.0% | |
| ! | ATTTTCAAACCCACTTGGGT+TGG | - | chr8_2:62683119-62683138 | None:intergenic | 40.0% |
| ! | GTTGCATTTTCAAACCCACT+TGG | - | chr8_2:62683124-62683143 | None:intergenic | 40.0% |
| ACAGAATAGAAGAACGGCAT+TGG | - | chr8_2:62683230-62683249 | None:intergenic | 40.0% | |
| GCCAAAAGTAAGGAGAACAA+AGG | + | chr8_2:62683418-62683437 | Msa1260650:CDS | 40.0% | |
| ! | CCCTTTGTTCTCCTTACTTT+TGG | - | chr8_2:62683422-62683441 | None:intergenic | 40.0% |
| GCTACTTATAATTTCGGACG+GGG | + | chr8_2:62684555-62684574 | Msa1260650:intron | 40.0% | |
| CTACTTATAATTTCGGACGG+GGG | + | chr8_2:62684556-62684575 | Msa1260650:intron | 40.0% | |
| ATGAGGAATAGGTATCCATC+TGG | - | chr8_2:62684721-62684740 | None:intergenic | 40.0% | |
| CAATCACACGTATGAGGAAT+AGG | - | chr8_2:62684732-62684751 | None:intergenic | 40.0% | |
| TTGTAGCAATCACACGTATG+AGG | - | chr8_2:62684738-62684757 | None:intergenic | 40.0% | |
| CATCTTAAGGCAAGTTCTTC+TGG | + | chr8_2:62684762-62684781 | Msa1260650:CDS | 40.0% | |
| ! | TTCTCGAGAAACTGTTGGTT+TGG | - | chr8_2:62684887-62684906 | None:intergenic | 40.0% |
| AAGCATTCTCGAGAAACTGT+TGG | - | chr8_2:62684892-62684911 | None:intergenic | 40.0% | |
| GTTTCTCGAGAATGCTTCAA+AGG | + | chr8_2:62684895-62684914 | Msa1260650:CDS | 40.0% | |
| TTCAAAGGAGAAGGAAGAGT+TGG | + | chr8_2:62684910-62684929 | Msa1260650:CDS | 40.0% | |
| !! | GGCTGATATTGATAGTGATG+TGG | + | chr8_2:62684934-62684953 | Msa1260650:CDS | 40.0% |
| GTTGGAATCATGTGTGTTAG+TGG | + | chr8_2:62685042-62685061 | Msa1260650:three_prime_UTR | 40.0% | |
| ACATCAGTTGTGGTCTCTAC+TGG | + | chr8_2:62682789-62682808 | Msa1260650:intron | 45.0% | |
| TAGCCCACCTAAATTGACAC+CGG | + | chr8_2:62683029-62683048 | Msa1260650:intron | 45.0% | |
| ! | TCACCGGTGTCAATTTAGGT+GGG | - | chr8_2:62683035-62683054 | None:intergenic | 45.0% |
| TCGAACTTGAGATCTCAAGG+AGG | + | chr8_2:62683058-62683077 | Msa1260650:intron | 45.0% | |
| !! | GTGGTATTGGCTTGGAACTT+AGG | - | chr8_2:62683092-62683111 | None:intergenic | 45.0% |
| AGTTCCAAGCCAATACCACT+AGG | + | chr8_2:62683093-62683112 | Msa1260650:intron | 45.0% | |
| TCTATCTTCCCATTGTTGCC+AGG | + | chr8_2:62683769-62683788 | Msa1260650:intron | 45.0% | |
| CGAGAATGCTTCAAAGGAGA+AGG | + | chr8_2:62684901-62684920 | Msa1260650:CDS | 45.0% | |
| AAAGGAGAAGGAAGAGTTGG+AGG | + | chr8_2:62684913-62684932 | Msa1260650:CDS | 45.0% | |
| !! | AATAAAAATAATAAATTCAA+AGG | - | chr8_2:62682703-62682722 | None:intergenic | 5.0% |
| !! | AAAAAAAAAAAAATAAAAAG+AGG | - | chr8_2:62682993-62683012 | None:intergenic | 5.0% |
| ! | CTCACCGGTGTCAATTTAGG+TGG | - | chr8_2:62683036-62683055 | None:intergenic | 50.0% |
| !! | TTGGCCTAGTGGTATTGGCT+TGG | - | chr8_2:62683100-62683119 | None:intergenic | 50.0% |
| !! | TTGGGTTGGCCTAGTGGTAT+TGG | - | chr8_2:62683105-62683124 | None:intergenic | 50.0% |
| TTCCCATTGTTGCCAGGCTT+GGG | + | chr8_2:62683775-62683794 | Msa1260650:intron | 50.0% | |
| TTCCCAAGCCTGGCAACAAT+GGG | - | chr8_2:62683780-62683799 | None:intergenic | 50.0% | |
| TTTCCCAAGCCTGGCAACAA+TGG | - | chr8_2:62683781-62683800 | None:intergenic | 50.0% | |
| TACCACTAGGCCAACCCAAG+TGG | + | chr8_2:62683106-62683125 | Msa1260650:intron | 55.0% | |
| ACCACTAGGCCAACCCAAGT+GGG | + | chr8_2:62683107-62683126 | Msa1260650:intron | 55.0% | |
| CTTCCCATTGTTGCCAGGCT+TGG | + | chr8_2:62683774-62683793 | Msa1260650:intron | 55.0% | |
| TGGGCTGAATTTCCCAAGCC+TGG | - | chr8_2:62683790-62683809 | None:intergenic | 55.0% | |
| !! | ACCCACTTGGGTTGGCCTAG+TGG | - | chr8_2:62683111-62683130 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 62682477 | 62685145 | 62682477 | ID=Msa1260650;Name=Msa1260650 |
| chr8_2 | mRNA | 62682477 | 62685145 | 62682477 | ID=Msa1260650-mRNA-1;Parent=Msa1260650;Name=Msa1260650-mRNA-1;_AED=0.21;_eAED=0.21;_QI=109|1|1|1|0.75|0.6|5|168|200 |
| chr8_2 | exon | 62682477 | 62682526 | 62682477 | ID=Msa1260650-mRNA-1:exon:19963;Parent=Msa1260650-mRNA-1 |
| chr8_2 | exon | 62682796 | 62682858 | 62682796 | ID=Msa1260650-mRNA-1:exon:19964;Parent=Msa1260650-mRNA-1 |
| chr8_2 | exon | 62683366 | 62683578 | 62683366 | ID=Msa1260650-mRNA-1:exon:19965;Parent=Msa1260650-mRNA-1 |
| chr8_2 | exon | 62683956 | 62684066 | 62683956 | ID=Msa1260650-mRNA-1:exon:19966;Parent=Msa1260650-mRNA-1 |
| chr8_2 | exon | 62684703 | 62685145 | 62684703 | ID=Msa1260650-mRNA-1:exon:19967;Parent=Msa1260650-mRNA-1 |
| chr8_2 | five_prime_UTR | 62682477 | 62682526 | 62682477 | ID=Msa1260650-mRNA-1:five_prime_utr;Parent=Msa1260650-mRNA-1 |
| chr8_2 | five_prime_UTR | 62682796 | 62682854 | 62682796 | ID=Msa1260650-mRNA-1:five_prime_utr;Parent=Msa1260650-mRNA-1 |
| chr8_2 | CDS | 62682855 | 62682858 | 62682855 | ID=Msa1260650-mRNA-1:cds;Parent=Msa1260650-mRNA-1 |
| chr8_2 | CDS | 62683366 | 62683578 | 62683366 | ID=Msa1260650-mRNA-1:cds;Parent=Msa1260650-mRNA-1 |
| chr8_2 | CDS | 62683956 | 62684066 | 62683956 | ID=Msa1260650-mRNA-1:cds;Parent=Msa1260650-mRNA-1 |
| chr8_2 | CDS | 62684703 | 62684977 | 62684703 | ID=Msa1260650-mRNA-1:cds;Parent=Msa1260650-mRNA-1 |
| chr8_2 | three_prime_UTR | 62684978 | 62685145 | 62684978 | ID=Msa1260650-mRNA-1:three_prime_utr;Parent=Msa1260650-mRNA-1 |
| Gene Sequence |
| Protein sequence |
