Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1214200 | RHN63793.1 | 58.333 | 60 | 14 | 2 | 73 | 132 | 2 | 50 | 4.67e-12 | 70.5 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0105420 | Msa1214200 | 0.810378 | 1.187305e-50 | -8.615850e-47 |
| Msa0621590 | Msa1214200 | 0.803901 | 2.793728e-49 | -8.615850e-47 |
| Msa0756630 | Msa1214200 | -0.815091 | 1.104150e-51 | -8.615850e-47 |
| Msa0414950 | Msa1214200 | -0.801887 | 7.282876e-49 | -8.615850e-47 |
| Msa1040120 | Msa1214200 | 0.805883 | 1.076615e-49 | -8.615850e-47 |
| Msa1097840 | Msa1214200 | 0.803830 | 2.890149e-49 | -8.615850e-47 |
| Msa0243710 | Msa1214200 | 0.805703 | 1.174640e-49 | -8.615850e-47 |
| Msa1214200 | Msa1260650 | 0.854605 | 1.101179e-61 | -8.615850e-47 |
| Msa1214200 | Msa1264020 | 0.802369 | 5.796056e-49 | -8.615850e-47 |
| Msa1214200 | Msa1427760 | 0.802728 | 4.888923e-49 | -8.615850e-47 |
| Msa0484780 | Msa1214200 | 0.810202 | 1.296172e-50 | -8.615850e-47 |
| Msa0850960 | Msa1214200 | 0.816913 | 4.328652e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1214200 | MtrunA17_Chr4g0062151 | 58.333 | 60 | 14 | 2 | 73 | 132 | 2 | 50 | 4.30e-16 | 70.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 40 sgRNAs with CRISPR-Local
Find 139 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAACTGTTGGTTTGGAAAT+TGG | 0.181705 | 8_1:+74711809 | None:intergenic |
| CCCTTTGTTCTCCTTACTTT+TGG | 0.183239 | 8_1:+74713271 | None:intergenic |
| CATCTTAAGGCAAGTTCTTC+TGG | 0.193097 | 8_1:-74711924 | Msa1214200:CDS |
| GTTGCTAAGAAACAAGAATT+AGG | 0.231022 | 8_1:-74713199 | Msa1214200:CDS |
| TGGTTTGGAAATTGGTATTA+TGG | 0.263805 | 8_1:+74711817 | None:intergenic |
| ATCGGTTTGAACGTCAAATA+AGG | 0.323259 | 8_1:+74713160 | None:intergenic |
| TTCTCGAGAAACTGTTGGTT+TGG | 0.333622 | 8_1:+74711802 | None:intergenic |
| ACATCAGTTGTGGTCTCTAC+TGG | 0.366276 | 8_1:-74713902 | Msa1214200:intron |
| TTGCTAAGAAACAAGAATTA+GGG | 0.371064 | 8_1:-74713198 | Msa1214200:CDS |
| ATTCTTGCTAAGAAGCAAAA+AGG | 0.376689 | 8_1:-74713139 | Msa1214200:CDS |
| ATGTACATTGGAGCATTCTC+TGG | 0.386139 | 8_1:+74711556 | None:intergenic |
| CAATCACACGTATGAGGAAT+AGG | 0.388822 | 8_1:+74711957 | None:intergenic |
| TTGTTTGATTCAACTGCTGC+TGG | 0.414944 | 8_1:+74713865 | None:intergenic |
| AAATCTTAACTATGTTTATG+AGG | 0.426663 | 8_1:-74711901 | Msa1214200:CDS |
| GAATGCGTAACTTATGTTGT+TGG | 0.453472 | 8_1:-74711579 | Msa1214200:three_prime_UTR |
| TCGTTTGATGTACAAGAAGA+AGG | 0.478336 | 8_1:-74712648 | Msa1214200:CDS |
| CATGAGTTGATGAAATAAGT+TGG | 0.481677 | 8_1:-74711726 | Msa1214200:exon |
| TTGCTACAAGATGCATCTTA+AGG | 0.483577 | 8_1:-74711937 | Msa1214200:CDS |
| TTGCTAAGAAGCCAAAAGTA+AGG | 0.498527 | 8_1:-74713282 | Msa1214200:CDS |
| TAAAATTTAGAAACGTGATC+GGG | 0.503203 | 8_1:+74714193 | None:intergenic |
| AAAGGAGAAGGAAGAGTTGG+AGG | 0.503994 | 8_1:-74711773 | Msa1214200:CDS |
| AAGTACTTTCAATTATAAGT+TGG | 0.512591 | 8_1:-74711662 | Msa1214200:three_prime_UTR |
| CCAAAAGTAAGGAGAACAAA+GGG | 0.514005 | 8_1:-74713271 | Msa1214200:CDS |
| TTAAAATTTAGAAACGTGAT+CGG | 0.514349 | 8_1:+74714192 | None:intergenic |
| TATTTCAAAAGCAATGCTAA+AGG | 0.514614 | 8_1:+74711878 | None:intergenic |
| AAGCATTCTCGAGAAACTGT+TGG | 0.516388 | 8_1:+74711797 | None:intergenic |
| TTGTAGCAATCACACGTATG+AGG | 0.521163 | 8_1:+74711951 | None:intergenic |
| CGAGAATGCTTCAAAGGAGA+AGG | 0.534249 | 8_1:-74711785 | Msa1214200:CDS |
| ATGAGGAATAGGTATCCATC+TGG | 0.534434 | 8_1:+74711968 | None:intergenic |
| TTCAAAGGAGAAGGAAGAGT+TGG | 0.536101 | 8_1:-74711776 | Msa1214200:CDS |
| GTTGGAATCATGTGTGTTAG+TGG | 0.550853 | 8_1:-74711644 | Msa1214200:three_prime_UTR |
| GCCAAAAGTAAGGAGAACAA+AGG | 0.559126 | 8_1:-74713272 | Msa1214200:CDS |
| GTTTCTCGAGAATGCTTCAA+AGG | 0.559657 | 8_1:-74711791 | Msa1214200:CDS |
| CGTTTGATGTACAAGAAGAA+GGG | 0.561147 | 8_1:-74712647 | Msa1214200:CDS |
| TTGGAATCATGTGTGTTAGT+GGG | 0.612370 | 8_1:-74711643 | Msa1214200:three_prime_UTR |
| TGCTAAGAAACAAGAATTAG+GGG | 0.623852 | 8_1:-74713197 | Msa1214200:CDS |
| AAATGTCTAAGTATGCCAGA+TGG | 0.629384 | 8_1:-74711983 | Msa1214200:CDS |
| GGCTGATATTGATAGTGATG+TGG | 0.690460 | 8_1:-74711752 | Msa1214200:CDS |
| GCTAAGAAACAAGAATTAGG+GGG | 0.701793 | 8_1:-74713196 | Msa1214200:CDS |
| AACAAAGGGAAATATTCGTG+TGG | 0.703899 | 8_1:-74713257 | Msa1214200:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAGTTGAAAATTAAAAAA+AGG | + | chr8_1:74712384-74712403 | None:intergenic | 10.0% |
| !!! | AAGAACAAAAAATTTTAAAG+CGG | + | chr8_1:74711855-74711874 | None:intergenic | 15.0% |
| !! | TATAATAATAGAGAATGAAA+TGG | + | chr8_1:74712295-74712314 | None:intergenic | 15.0% |
| !! | TTGAAAATTAAAAAAAGGAA+AGG | + | chr8_1:74712379-74712398 | None:intergenic | 15.0% |
| !! | GATCAAATAAAAAATCAAAA+GGG | + | chr8_1:74712421-74712440 | None:intergenic | 15.0% |
| !! | TGATCAAATAAAAAATCAAA+AGG | + | chr8_1:74712422-74712441 | None:intergenic | 15.0% |
| !! | AAAAAAAAAAAATAGAAGAC+AGG | + | chr8_1:74712926-74712945 | None:intergenic | 15.0% |
| !!! | TTTTATCAAATAAGAAATGA+AGG | + | chr8_1:74713018-74713037 | None:intergenic | 15.0% |
| !! | TTATAAAATGACTTACAATT+TGG | - | chr8_1:74713606-74713625 | Msa1214200:intron | 15.0% |
| !! | CTTATTAAAAACTACTATTA+CGG | + | chr8_1:74714084-74714103 | None:intergenic | 15.0% |
| !! | TTAAAATTTAGAAACGTGAT+CGG | + | chr8_1:74711590-74711609 | None:intergenic | 20.0% |
| !!! | ACGTTTCTAAATTTTAATTC+TGG | - | chr8_1:74711593-74711612 | Msa1214200:three_prime_UTR | 20.0% |
| !!! | TTTGTTTCTTCTTCTTAATT+GGG | - | chr8_1:74711616-74711635 | Msa1214200:three_prime_UTR | 20.0% |
| !!! | TTAATCTTTTCTGAAATTGT+TGG | - | chr8_1:74711749-74711768 | Msa1214200:CDS | 20.0% |
| !!! | TAATCTTTTCTGAAATTGTT+GGG | - | chr8_1:74711750-74711769 | Msa1214200:CDS | 20.0% |
| !! | TAAAAACATTCAACAGAATT+TGG | - | chr8_1:74713033-74713052 | Msa1214200:intron | 20.0% |
| !! | AAAAACAACAAAAATGAAGT+TGG | - | chr8_1:74713072-74713091 | Msa1214200:intron | 20.0% |
| !! | AGAGAATATTAAAAAGTGAA+GGG | - | chr8_1:74713548-74713567 | Msa1214200:intron | 20.0% |
| !! | ACTTAAAAAAGAAAAAGATG+AGG | + | chr8_1:74713717-74713736 | None:intergenic | 20.0% |
| !! | TCAAAAAATAAGAAACGAAA+GGG | + | chr8_1:74713763-74713782 | None:intergenic | 20.0% |
| !! | ATCAAAAAATAAGAAACGAA+AGG | + | chr8_1:74713764-74713783 | None:intergenic | 20.0% |
| !! | AAATCTTAACTATGTTTATG+AGG | - | chr8_1:74713878-74713897 | Msa1214200:five_prime_UTR | 20.0% |
| !!! | CGTAATAGTAGTTTTTAATA+AGG | - | chr8_1:74714082-74714101 | Msa1214200:intron | 20.0% |
| !! | AAGTACTTTCAATTATAAGT+TGG | - | chr8_1:74714117-74714136 | Msa1214200:intron | 20.0% |
| ! | TAAAATTTAGAAACGTGATC+GGG | + | chr8_1:74711589-74711608 | None:intergenic | 25.0% |
| !! | GTTTGTTTCTTCTTCTTAAT+TGG | - | chr8_1:74711615-74711634 | Msa1214200:three_prime_UTR | 25.0% |
| !!! | AATCTTTTCTGAAATTGTTG+GGG | - | chr8_1:74711751-74711770 | Msa1214200:CDS | 25.0% |
| ! | ATGTTAACCAAGATGAAAAA+AGG | + | chr8_1:74711962-74711981 | None:intergenic | 25.0% |
| ! | GTAAATCATATCATAACAGA+TGG | + | chr8_1:74711994-74712013 | None:intergenic | 25.0% |
| ! | AAAAGAATTGTATCTTCACA+TGG | + | chr8_1:74712032-74712051 | None:intergenic | 25.0% |
| ! | AATAAAAAATCAAAAGGGTG+AGG | + | chr8_1:74712416-74712435 | None:intergenic | 25.0% |
| ! | TTGCTAAGAAACAAGAATTA+GGG | - | chr8_1:74712581-74712600 | Msa1214200:intron | 25.0% |
| ! | AAAACGTAAATCATAACAGA+TGG | + | chr8_1:74712748-74712767 | None:intergenic | 25.0% |
| !! | AACTTGCATTTTCATAAAAC+AGG | + | chr8_1:74712810-74712829 | None:intergenic | 25.0% |
| ! | GAGATAATAGAGAATGAAAT+GGG | + | chr8_1:74712898-74712917 | None:intergenic | 25.0% |
| !!! | AAGGCAAGGTTATTTTAATA+TGG | + | chr8_1:74712999-74713018 | None:intergenic | 25.0% |
| ! | TCAATCTAAATCATAACAGA+TGG | + | chr8_1:74713249-74713268 | None:intergenic | 25.0% |
| ! | CATATTAACATTCAATCAAG+AGG | + | chr8_1:74713329-74713348 | None:intergenic | 25.0% |
| ! | GTTAATATGCACATTTATCT+TGG | - | chr8_1:74713340-74713359 | Msa1214200:intron | 25.0% |
| ! | AAACAACTTATCATTTGGAA+TGG | + | chr8_1:74713411-74713430 | None:intergenic | 25.0% |
| ! | AGTCAAAACAACTTATCATT+TGG | + | chr8_1:74713416-74713435 | None:intergenic | 25.0% |
| ! | GAGAGAATATTAAAAAGTGA+AGG | - | chr8_1:74713547-74713566 | Msa1214200:intron | 25.0% |
| !!! | GATGTCTTCTATTTAGTTTT+TGG | - | chr8_1:74713683-74713702 | Msa1214200:intron | 25.0% |
| ! | AAGGGTTAGATAATTTCATA+TGG | + | chr8_1:74713745-74713764 | None:intergenic | 25.0% |
| ! | TATTTCAAAAGCAATGCTAA+AGG | + | chr8_1:74713904-74713923 | None:intergenic | 25.0% |
| GCAACAAAAAATAAGAGTCA+TGG | + | chr8_1:74711707-74711726 | None:intergenic | 30.0% | |
| !!! | TCAATCACCTTTTTTCATCT+TGG | - | chr8_1:74711952-74711971 | Msa1214200:CDS | 30.0% |
| !!! | CACATGGTTTTAAACTCATA+AGG | + | chr8_1:74712016-74712035 | None:intergenic | 30.0% |
| CAAACAACAGAATAGAAGAA+CGG | + | chr8_1:74712325-74712344 | None:intergenic | 30.0% | |
| GTTGCTAAGAAACAAGAATT+AGG | - | chr8_1:74712580-74712599 | Msa1214200:intron | 30.0% | |
| TGCTAAGAAACAAGAATTAG+GGG | - | chr8_1:74712582-74712601 | Msa1214200:intron | 30.0% | |
| ! | TTTTGCTTCTTAGCAAGAAT+CGG | + | chr8_1:74712640-74712659 | None:intergenic | 30.0% |
| ATTCTTGCTAAGAAGCAAAA+AGG | - | chr8_1:74712640-74712659 | Msa1214200:intron | 30.0% | |
| GGAGATAATAGAGAATGAAA+TGG | + | chr8_1:74712899-74712918 | None:intergenic | 30.0% | |
| AAAAAATAGAAGACAGGCAT+AGG | + | chr8_1:74712920-74712939 | None:intergenic | 30.0% | |
| TCAAATAAGAAATGAAGGCA+AGG | + | chr8_1:74713013-74713032 | None:intergenic | 30.0% | |
| TTGGTAAGAAGCAAAAAGTA+AGG | - | chr8_1:74713091-74713110 | Msa1214200:intron | 30.0% | |
| TCTAAATCATAACAGATGGA+TGG | + | chr8_1:74713245-74713264 | None:intergenic | 30.0% | |
| AGGTTGCATTTCTATAAAAC+AGG | + | chr8_1:74713309-74713328 | None:intergenic | 30.0% | |
| AATGGATGGAGCAATTAAAT+GGG | + | chr8_1:74713393-74713412 | None:intergenic | 30.0% | |
| ! | AACTTATCATTTGGAATGGA+TGG | + | chr8_1:74713407-74713426 | None:intergenic | 30.0% |
| TTGTCCTTCATTAATGCTAT+AGG | - | chr8_1:74713497-74713516 | Msa1214200:intron | 30.0% | |
| TGTCCTTCATTAATGCTATA+GGG | - | chr8_1:74713498-74713517 | Msa1214200:intron | 30.0% | |
| TTTCCCTATAGCATTAATGA+AGG | + | chr8_1:74713504-74713523 | None:intergenic | 30.0% | |
| CTCAAAGCTACTTATACTTT+CGG | - | chr8_1:74713642-74713661 | Msa1214200:intron | 30.0% | |
| ! | TGGTTTGGAAATTGGTATTA+TGG | + | chr8_1:74713965-74713984 | None:intergenic | 30.0% |
| !! | CATGAGTTGATGAAATAAGT+TGG | - | chr8_1:74714053-74714072 | Msa1214200:intron | 30.0% |
| !! | TTCTGAAATTGTTGGGGATT+AGG | - | chr8_1:74711757-74711776 | Msa1214200:CDS | 35.0% |
| ! | TCTGAAATTGTTGGGGATTA+GGG | - | chr8_1:74711758-74711777 | Msa1214200:CDS | 35.0% |
| TTGTTCTTTCACATCAGTTG+TGG | - | chr8_1:74711867-74711886 | Msa1214200:CDS | 35.0% | |
| ! | TTGCATTTTCAAACCCACTT+GGG | + | chr8_1:74712212-74712231 | None:intergenic | 35.0% |
| CATACTAACACTCAATCAAG+AGG | + | chr8_1:74712235-74712254 | None:intergenic | 35.0% | |
| GTGTTAGTATGCACATAAGT+TGG | - | chr8_1:74712244-74712263 | Msa1214200:intron | 35.0% | |
| AAGGAAAGGCTTAAAAGACA+AGG | + | chr8_1:74712365-74712384 | None:intergenic | 35.0% | |
| TTGCTAAGAAGCCAAAAGTA+AGG | - | chr8_1:74712497-74712516 | Msa1214200:intron | 35.0% | |
| CCAAAAGTAAGGAGAACAAA+GGG | - | chr8_1:74712508-74712527 | Msa1214200:intron | 35.0% | |
| AACAAAGGGAAATATTCGTG+TGG | - | chr8_1:74712522-74712541 | Msa1214200:intron | 35.0% | |
| GCTAAGAAACAAGAATTAGG+GGG | - | chr8_1:74712583-74712602 | Msa1214200:intron | 35.0% | |
| !! | ATCGGTTTGAACGTCAAATA+AGG | + | chr8_1:74712622-74712641 | None:intergenic | 35.0% |
| ! | TGTTTTACTCGATGCTGTAA+TGG | - | chr8_1:74712671-74712690 | Msa1214200:CDS | 35.0% |
| TATGTTCTTTGCAGTTACGT+TGG | - | chr8_1:74712702-74712721 | Msa1214200:CDS | 35.0% | |
| ATGTTCTTTGCAGTTACGTT+GGG | - | chr8_1:74712703-74712722 | Msa1214200:CDS | 35.0% | |
| TCGTTTGATGTACAAGAAGA+AGG | - | chr8_1:74713131-74713150 | Msa1214200:intron | 35.0% | |
| CGTTTGATGTACAAGAAGAA+GGG | - | chr8_1:74713132-74713151 | Msa1214200:intron | 35.0% | |
| !! | TGGGCTGAATTTCTAAAGTA+TGG | + | chr8_1:74713374-74713393 | None:intergenic | 35.0% |
| GAATGGATGGAGCAATTAAA+TGG | + | chr8_1:74713394-74713413 | None:intergenic | 35.0% | |
| TAAAAAGTGAAGGGTCTAAC+AGG | - | chr8_1:74713557-74713576 | Msa1214200:intron | 35.0% | |
| AAGCTACTTATACTTTCGGA+CGG | - | chr8_1:74713646-74713665 | Msa1214200:intron | 35.0% | |
| AAATGTCTAAGTATGCCAGA+TGG | - | chr8_1:74713796-74713815 | Msa1214200:intron | 35.0% | |
| TTGCTACAAGATGCATCTTA+AGG | - | chr8_1:74713842-74713861 | Msa1214200:intron | 35.0% | |
| !! | GAAACTGTTGGTTTGGAAAT+TGG | + | chr8_1:74713973-74713992 | None:intergenic | 35.0% |
| TTGGAATCATGTGTGTTAGT+GGG | - | chr8_1:74714136-74714155 | Msa1214200:intron | 35.0% | |
| GAATGCGTAACTTATGTTGT+TGG | - | chr8_1:74714200-74714219 | Msa1214200:five_prime_UTR | 35.0% | |
| TTGTTTGATTCAACTGCTGC+TGG | + | chr8_1:74711917-74711936 | None:intergenic | 40.0% | |
| ! | ATTCTCACCGGTGTCAATTT+AGG | + | chr8_1:74712128-74712147 | None:intergenic | 40.0% |
| ATCTCAAGTTCGATTCTCAC+CGG | + | chr8_1:74712140-74712159 | None:intergenic | 40.0% | |
| GAATCGAACTTGAGATCTCA+AGG | - | chr8_1:74712144-74712163 | Msa1214200:intron | 40.0% | |
| ! | ATTTTCAAACCCACTTGGGT+TGG | + | chr8_1:74712208-74712227 | None:intergenic | 40.0% |
| ! | GTTGCATTTTCAAACCCACT+TGG | + | chr8_1:74712213-74712232 | None:intergenic | 40.0% |
| ACAGAATAGAAGAACGGCAT+TGG | + | chr8_1:74712319-74712338 | None:intergenic | 40.0% | |
| GCCAAAAGTAAGGAGAACAA+AGG | - | chr8_1:74712507-74712526 | Msa1214200:intron | 40.0% | |
| ! | CCCTTTGTTCTCCTTACTTT+TGG | + | chr8_1:74712511-74712530 | None:intergenic | 40.0% |
| ! | GCAAAAAGTAAGGAGCATAG+AGG | - | chr8_1:74713101-74713120 | Msa1214200:intron | 40.0% |
| AGCTACTTATACTTTCGGAC+GGG | - | chr8_1:74713647-74713666 | Msa1214200:intron | 40.0% | |
| ATGAGGAATAGGTATCCATC+TGG | + | chr8_1:74713814-74713833 | None:intergenic | 40.0% | |
| CAATCACACGTATGAGGAAT+AGG | + | chr8_1:74713825-74713844 | None:intergenic | 40.0% | |
| TTGTAGCAATCACACGTATG+AGG | + | chr8_1:74713831-74713850 | None:intergenic | 40.0% | |
| CATCTTAAGGCAAGTTCTTC+TGG | - | chr8_1:74713855-74713874 | Msa1214200:exon | 40.0% | |
| ! | TTCTCGAGAAACTGTTGGTT+TGG | + | chr8_1:74713980-74713999 | None:intergenic | 40.0% |
| AAGCATTCTCGAGAAACTGT+TGG | + | chr8_1:74713985-74714004 | None:intergenic | 40.0% | |
| GTTTCTCGAGAATGCTTCAA+AGG | - | chr8_1:74713988-74714007 | Msa1214200:intron | 40.0% | |
| TTCAAAGGAGAAGGAAGAGT+TGG | - | chr8_1:74714003-74714022 | Msa1214200:intron | 40.0% | |
| !! | GGCTGATATTGATAGTGATG+TGG | - | chr8_1:74714027-74714046 | Msa1214200:intron | 40.0% |
| GTTGGAATCATGTGTGTTAG+TGG | - | chr8_1:74714135-74714154 | Msa1214200:intron | 40.0% | |
| ACATCAGTTGTGGTCTCTAC+TGG | - | chr8_1:74711877-74711896 | Msa1214200:CDS | 45.0% | |
| TAGCCCACCTAAATTGACAC+CGG | - | chr8_1:74712118-74712137 | Msa1214200:intron | 45.0% | |
| ! | TCACCGGTGTCAATTTAGGT+GGG | + | chr8_1:74712124-74712143 | None:intergenic | 45.0% |
| TCGAACTTGAGATCTCAAGG+AGG | - | chr8_1:74712147-74712166 | Msa1214200:intron | 45.0% | |
| !! | GTGGTATTGGCTTGGAACTT+AGG | + | chr8_1:74712181-74712200 | None:intergenic | 45.0% |
| AGTTCCAAGCCAATACCACT+AGG | - | chr8_1:74712182-74712201 | Msa1214200:intron | 45.0% | |
| TCTATCTTCCCATTGTTGCC+AGG | - | chr8_1:74712858-74712877 | Msa1214200:intron | 45.0% | |
| GCTACTTATACTTTCGGACG+GGG | - | chr8_1:74713648-74713667 | Msa1214200:intron | 45.0% | |
| CTACTTATACTTTCGGACGG+GGG | - | chr8_1:74713649-74713668 | Msa1214200:intron | 45.0% | |
| CGAGAATGCTTCAAAGGAGA+AGG | - | chr8_1:74713994-74714013 | Msa1214200:intron | 45.0% | |
| AAAGGAGAAGGAAGAGTTGG+AGG | - | chr8_1:74714006-74714025 | Msa1214200:intron | 45.0% | |
| !! | AATAAAAATAATAAATTCAA+AGG | + | chr8_1:74711791-74711810 | None:intergenic | 5.0% |
| !! | AAAAAAAAAAAAAAAAAAAG+AGG | + | chr8_1:74712081-74712100 | None:intergenic | 5.0% |
| !!! | ATTTTTTTTTTTTTTTTTTG+TGG | - | chr8_1:74712933-74712952 | Msa1214200:intron | 5.0% |
| ! | CTCACCGGTGTCAATTTAGG+TGG | + | chr8_1:74712125-74712144 | None:intergenic | 50.0% |
| !! | TTGGCCTAGTGGTATTGGCT+TGG | + | chr8_1:74712189-74712208 | None:intergenic | 50.0% |
| !! | TTGGGTTGGCCTAGTGGTAT+TGG | + | chr8_1:74712194-74712213 | None:intergenic | 50.0% |
| TTCCCATTGTTGCCAGGCTT+GGG | - | chr8_1:74712864-74712883 | Msa1214200:intron | 50.0% | |
| TTCCCAAGCCTGGCAACAAT+GGG | + | chr8_1:74712869-74712888 | None:intergenic | 50.0% | |
| TTTCCCAAGCCTGGCAACAA+TGG | + | chr8_1:74712870-74712889 | None:intergenic | 50.0% | |
| TACCACTAGGCCAACCCAAG+TGG | - | chr8_1:74712195-74712214 | Msa1214200:intron | 55.0% | |
| ACCACTAGGCCAACCCAAGT+GGG | - | chr8_1:74712196-74712215 | Msa1214200:intron | 55.0% | |
| CTTCCCATTGTTGCCAGGCT+TGG | - | chr8_1:74712863-74712882 | Msa1214200:intron | 55.0% | |
| TGGGCTGAATTTCCCAAGCC+TGG | + | chr8_1:74712879-74712898 | None:intergenic | 55.0% | |
| !! | ACCCACTTGGGTTGGCCTAG+TGG | + | chr8_1:74712200-74712219 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 74711565 | 74714236 | 74711565 | ID=Msa1214200;Name=Msa1214200 |
| chr8_1 | mRNA | 74711565 | 74714236 | 74711565 | ID=Msa1214200-mRNA-1;Parent=Msa1214200;Name=Msa1214200-mRNA-1;_AED=0.11;_eAED=0.11;_QI=109|1|1|1|0.75|0.6|5|166|200 |
| chr8_1 | exon | 74711565 | 74712005 | 74711565 | ID=Msa1214200-mRNA-1:exon:25645;Parent=Msa1214200-mRNA-1 |
| chr8_1 | exon | 74712642 | 74712752 | 74712642 | ID=Msa1214200-mRNA-1:exon:25644;Parent=Msa1214200-mRNA-1 |
| chr8_1 | exon | 74713134 | 74713346 | 74713134 | ID=Msa1214200-mRNA-1:exon:25643;Parent=Msa1214200-mRNA-1 |
| chr8_1 | exon | 74713855 | 74713917 | 74713855 | ID=Msa1214200-mRNA-1:exon:25642;Parent=Msa1214200-mRNA-1 |
| chr8_1 | exon | 74714187 | 74714236 | 74714187 | ID=Msa1214200-mRNA-1:exon:25641;Parent=Msa1214200-mRNA-1 |
| chr8_1 | five_prime_UTR | 74714187 | 74714236 | 74714187 | ID=Msa1214200-mRNA-1:five_prime_utr;Parent=Msa1214200-mRNA-1 |
| chr8_1 | five_prime_UTR | 74713859 | 74713917 | 74713859 | ID=Msa1214200-mRNA-1:five_prime_utr;Parent=Msa1214200-mRNA-1 |
| chr8_1 | CDS | 74713855 | 74713858 | 74713855 | ID=Msa1214200-mRNA-1:cds;Parent=Msa1214200-mRNA-1 |
| chr8_1 | CDS | 74713134 | 74713346 | 74713134 | ID=Msa1214200-mRNA-1:cds;Parent=Msa1214200-mRNA-1 |
| chr8_1 | CDS | 74712642 | 74712752 | 74712642 | ID=Msa1214200-mRNA-1:cds;Parent=Msa1214200-mRNA-1 |
| chr8_1 | CDS | 74711731 | 74712005 | 74711731 | ID=Msa1214200-mRNA-1:cds;Parent=Msa1214200-mRNA-1 |
| chr8_1 | three_prime_UTR | 74711565 | 74711730 | 74711565 | ID=Msa1214200-mRNA-1:three_prime_utr;Parent=Msa1214200-mRNA-1 |
| Gene Sequence |
| Protein sequence |
