AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1264180


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 102 sgRNAs with CRISPR-Local

Find 233 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAATCTGAATTTACGGATAT+TGG 0.214611 8_2:-67536153 Msa1264180:three_prime_UTR
TGATAGAATCATTGCAAATT+TGG 0.230560 8_2:+67535183 None:intergenic
AGTATAAGCTTCAGCTTAAC+TGG 0.248424 8_2:-67535861 Msa1264180:three_prime_UTR
CCTTACAAGTTACAACAATT+AGG 0.258445 8_2:+67538019 None:intergenic
AAATGCTTGTTGCAGTAAAT+TGG 0.289252 8_2:+67535146 None:intergenic
ACTTTCATGCGCATGTTAGC+TGG 0.296912 8_2:-67535955 Msa1264180:three_prime_UTR
CTTACAAGTTACAACAATTA+GGG 0.315535 8_2:+67538020 None:intergenic
TGGCCCATTGAAAGCATCTT+AGG 0.319230 8_2:+67535700 None:intergenic
AAAGCATTAATCTGAATTTA+CGG 0.323920 8_2:-67536160 Msa1264180:three_prime_UTR
TAATGAGAAGTCTACTGTTC+TGG 0.350793 8_2:-67535818 Msa1264180:three_prime_UTR
TATTGCAGAACACAGGAAAC+AGG 0.372464 8_2:-67535566 Msa1264180:three_prime_UTR
TAAGCTTGCACTTGAGTTGA+TGG 0.405805 8_2:-67535749 Msa1264180:three_prime_UTR
AGTGTTGCTGATGACGAAAT+TGG 0.408655 8_2:+67536197 None:intergenic
CGTCTGCAGGAGAAATCCTT+TGG 0.429605 8_2:-67535921 Msa1264180:three_prime_UTR
TTCACTTTCTTGTTCTCACT+TGG 0.432528 8_2:+67538199 Msa1264190:CDS
GCTATGCTTGGGAGAAGAAA+AGG 0.440622 8_2:+67538169 Msa1264190:CDS
GTGGATCGATTTGCTATGCT+TGG 0.441553 8_2:+67538157 Msa1264190:CDS
GTTACAACAATTAGGGTTTG+TGG 0.445339 8_2:+67538027 None:intergenic
CTTGTGCTAACAGGTGCAAA+TGG 0.445397 8_2:-67535991 Msa1264180:three_prime_UTR
TGCACTTGAGTTGATGGGAC+TGG 0.458658 8_2:-67535743 Msa1264180:three_prime_UTR
GGCTCGTCTAGCAACCATAT+GGG 0.461520 8_2:+67535634 None:intergenic
AACATTTGCCTCATTCTTAG+CGG 0.462342 8_2:+67535212 None:intergenic
CATGGAATCTTCTATCTCAA+TGG 0.462552 8_2:+67535513 None:intergenic
GCACTTGAGTTGATGGGACT+GGG 0.464272 8_2:-67535742 Msa1264180:three_prime_UTR
TGAGAACAAGAAAGTGAAAC+GGG 0.466782 8_2:-67538194 Msa1264180:CDS
GGAGGGGCACTTGTGCTAAC+AGG 0.470048 8_2:-67536000 Msa1264180:three_prime_UTR
GTCTCGCGGCTCACCGGCGG+TGG 0.470064 8_2:+67538127 Msa1264190:CDS
GCGATCAATTGCGAGCAATC+TGG 0.470226 8_2:+67535657 None:intergenic
ATCCTCCTTGGAAACCTTGG+TGG 0.473105 8_2:+67535478 None:intergenic
GAGAGTAATCGCGGCGGTGA+TGG 0.473154 8_2:+67538085 None:intergenic
TCTATAAGTGTCATCCTCCT+TGG 0.473498 8_2:+67535466 None:intergenic
TCGCAATTGATCGCCCCATA+TGG 0.474072 8_2:-67535648 Msa1264180:three_prime_UTR
AGCTAACATGCGCATGAAAG+TGG 0.475025 8_2:+67535957 None:intergenic
AGGCTCGTCTAGCAACCATA+TGG 0.475048 8_2:+67535633 None:intergenic
CTTTCATGCGCATGTTAGCT+GGG 0.479202 8_2:-67535954 Msa1264180:three_prime_UTR
CACTTATAGATATGCTTGAC+CGG 0.480974 8_2:-67535453 Msa1264180:three_prime_UTR
ATGGAATCTTCTATCTCAAT+GGG 0.487729 8_2:+67535514 None:intergenic
GTTGATGGGACTGGGAAGAT+TGG 0.488958 8_2:-67535734 Msa1264180:three_prime_UTR
AAAGCCTAAGATGCTTTCAA+TGG 0.493892 8_2:-67535704 Msa1264180:three_prime_UTR
AGAGTGGTCTCGCGGCTCAC+CGG 0.494837 8_2:+67538121 Msa1264190:CDS
TCATGCAAGAGACATTGTTA+AGG 0.501277 8_2:+67536070 None:intergenic
GCTCTCTAAATTGAAGAAGA+AGG 0.503109 8_2:+67538063 None:intergenic
GTCATCCTCCTTGGAAACCT+TGG 0.511121 8_2:+67535475 None:intergenic
GAATTTACGGATATTGGCAG+TGG 0.521100 8_2:-67536147 Msa1264180:three_prime_UTR
CACCGGCGGTGGTGTAGTGG+TGG 0.525785 8_2:+67538138 Msa1264190:CDS
TGCTCTTGAGGCTGCCACCA+AGG 0.526833 8_2:-67535492 Msa1264180:three_prime_UTR
AGGGCTCTTAAAATATTCCA+TGG 0.529631 8_2:+67535262 None:intergenic
GTGAGAACAAGAAAGTGAAA+CGG 0.534171 8_2:-67538195 Msa1264180:CDS
GGCTGCCACCAAGGTTTCCA+AGG 0.535052 8_2:-67535483 Msa1264180:three_prime_UTR
GTAATCGCGGCGGTGATGGA+TGG 0.535283 8_2:+67538089 None:intergenic
CTATGCTCTTGTATCTTCCA+TGG 0.538427 8_2:-67535279 Msa1264180:three_prime_UTR
GAATGTCATGGCCATTCCAA+AGG 0.538492 8_2:+67535905 None:intergenic
AATGTCTCTCTTCATGATGG+AGG 0.538799 8_2:-67536018 Msa1264180:three_prime_UTR
AAGCCTAAGATGCTTTCAAT+GGG 0.539281 8_2:-67535703 Msa1264180:three_prime_UTR
TCAGTTGCATTAGATGATGA+AGG 0.540951 8_2:-67535610 Msa1264180:three_prime_UTR
GCTAACAGGTGCAAATGGCT+CGG 0.541340 8_2:-67535986 Msa1264180:three_prime_UTR
CTAACAGGTGCAAATGGCTC+GGG 0.543916 8_2:-67535985 Msa1264180:three_prime_UTR
ACATTGTTAAGGAGGAGACG+AGG 0.550534 8_2:+67536081 None:intergenic
AATACAAAAGTCAACTACAT+AGG 0.554009 8_2:+67535343 None:intergenic
TAAGCTGAAGCTTATACTGA+TGG 0.554659 8_2:+67535866 None:intergenic
AAGCTTGCACTTGAGTTGAT+GGG 0.556728 8_2:-67535748 Msa1264180:three_prime_UTR
TGGATCGATTTGCTATGCTT+GGG 0.557084 8_2:+67538158 Msa1264190:CDS
ATGTCTCTCTTCATGATGGA+GGG 0.559238 8_2:-67536017 Msa1264180:three_prime_UTR
AACTGGGTCTGCCTCAAGCA+TGG 0.564032 8_2:-67535844 Msa1264180:three_prime_UTR
ACAGGGAGGAATTGTGATTG+TGG 0.566283 8_2:-67535548 Msa1264180:three_prime_UTR
GCTCACCGGCGGTGGTGTAG+TGG 0.568544 8_2:+67538135 Msa1264190:CDS
TGGTGGCAGCCTCAAGAGCA+TGG 0.568725 8_2:+67535495 None:intergenic
TCTCATTAATTCCATGCTTG+AGG 0.569583 8_2:+67535833 None:intergenic
GCGGTGATGGATGGAGAAAG+AGG 0.570030 8_2:+67538098 None:intergenic
TGTCTCTCTTCATGATGGAG+GGG 0.571601 8_2:-67536016 Msa1264180:three_prime_UTR
TCTTGATTACAAACGAGGGA+AGG 0.572184 8_2:-67535773 Msa1264180:three_prime_UTR
GTGAATGTCTCTCTTCATGA+TGG 0.575226 8_2:-67536021 Msa1264180:three_prime_UTR
GTGGTCTCGCGGCTCACCGG+CGG 0.583254 8_2:+67538124 Msa1264190:CDS
TAGAAGATTCCATGCTCTTG+AGG 0.587588 8_2:-67535504 Msa1264180:three_prime_UTR
AAAGTTAACTAATATCTGCC+CGG 0.588067 8_2:+67535434 None:intergenic
CACATTAGACAGAACTTGCG+AGG 0.590033 8_2:+67536041 None:intergenic
GTAGTATACCGCTAAGAATG+AGG 0.591629 8_2:-67535220 Msa1264180:three_prime_UTR
GCAGGAGAAATCCTTTGGAA+TGG 0.592243 8_2:-67535916 Msa1264180:three_prime_UTR
CATGGAAGATACAAGAGCAT+AGG 0.592495 8_2:+67535280 None:intergenic
TGCAAGAGACATTGTTAAGG+AGG 0.593226 8_2:+67536073 None:intergenic
GGGACTGGGAAGATTGGCTA+AGG 0.595370 8_2:-67535728 Msa1264180:three_prime_UTR
CAAAGGATTTCTCCTGCAGA+CGG 0.597971 8_2:+67535922 None:intergenic
CATTGTTAAGGAGGAGACGA+GGG 0.610651 8_2:+67536082 None:intergenic
GTATAAGCTTCAGCTTAACT+GGG 0.615494 8_2:-67535860 Msa1264180:three_prime_UTR
TCATCATCTAATGCAACTGA+AGG 0.627900 8_2:+67535613 None:intergenic
ATCCACCACTACACCACCGC+CGG 0.632180 8_2:-67538140 Msa1264180:CDS
AACTTCTTGATTACAAACGA+GGG 0.639263 8_2:-67535777 Msa1264180:three_prime_UTR
GCTCGTCTAGCAACCATATG+GGG 0.642137 8_2:+67535635 None:intergenic
GAACTTCTTGATTACAAACG+AGG 0.642628 8_2:-67535778 Msa1264180:three_prime_UTR
GAAAGAGGAGAGTGGTCTCG+CGG 0.647733 8_2:+67538113 Msa1264190:CDS
TGATTCTATCAAACTTACTG+TGG 0.651073 8_2:-67535171 Msa1264180:three_prime_UTR
TGGATGGAGAAAGAGGAGAG+TGG 0.651784 8_2:+67538105 None:intergenic
ACTTATAGATATGCTTGACC+GGG 0.653298 8_2:-67535452 Msa1264180:three_prime_UTR
ATTGCAGAACACAGGAAACA+GGG 0.655611 8_2:-67535565 Msa1264180:three_prime_UTR
AGTACATTATTGCAGAACAC+AGG 0.673742 8_2:-67535573 Msa1264180:three_prime_UTR
ATTGTTAAGGAGGAGACGAG+GGG 0.674115 8_2:+67536083 None:intergenic
AGATGCTTTCAATGGGCCAG+CGG 0.680942 8_2:-67535696 Msa1264180:three_prime_UTR
AAGAAGAAGGAGAGTAATCG+CGG 0.685888 8_2:+67538076 None:intergenic
TGCCACCAAGGTTTCCAAGG+AGG 0.687258 8_2:-67535480 Msa1264180:three_prime_UTR
TTGTTAAGGAGGAGACGAGG+GGG 0.688535 8_2:+67536084 None:intergenic
AAGAAGGAGAGTAATCGCGG+CGG 0.769131 8_2:+67538079 None:intergenic
GCAGAACACAGGAAACAGGG+AGG 0.788797 8_2:-67535562 Msa1264180:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTGTAAAATTGATTTTAA+CGG - chr8_2:67536090-67536109 Msa1264180:three_prime_UTR 10.0%
!! TTAACAATTAACAACAATTA+GGG + chr8_2:67535442-67535461 None:intergenic 15.0%
!! TTTAACAATTAACAACAATT+AGG + chr8_2:67535443-67535462 None:intergenic 15.0%
!! AAGTATAATATTATTGATGT+AGG - chr8_2:67535672-67535691 Msa1264180:three_prime_UTR 15.0%
!!! TTGTGACATTTTATTAATTT+AGG - chr8_2:67537990-67538009 Msa1264180:intron 15.0%
!! TGAATTTATCAACTAACAAA+AGG + chr8_2:67535512-67535531 None:intergenic 20.0%
!!! AAGCAAATTTTTTTTACCAA+TGG - chr8_2:67536513-67536532 Msa1264180:intron 20.0%
!!! AGCAAATTTTTTTTACCAAT+GGG - chr8_2:67536514-67536533 Msa1264180:intron 20.0%
!! AATTTCATGTGATAAAAGAA+AGG - chr8_2:67536541-67536560 Msa1264180:intron 20.0%
!! ATTTCATGTGATAAAAGAAA+GGG - chr8_2:67536542-67536561 Msa1264180:intron 20.0%
!!! AAAGCATTAATCTGAATTTA+CGG - chr8_2:67537199-67537218 Msa1264180:intron 20.0%
! CTTACAAGTTACAACAATTA+GGG + chr8_2:67535342-67535361 None:intergenic 25.0%
! CAAATCAGAATCATAATTGA+AGG + chr8_2:67535389-67535408 None:intergenic 25.0%
! TAACAAAAGGACAGTAAATA+AGG + chr8_2:67535499-67535518 None:intergenic 25.0%
! ATCTTTGTAAAGAGAGTAAA+GGG + chr8_2:67535545-67535564 None:intergenic 25.0%
! AATCTTTGTAAAGAGAGTAA+AGG + chr8_2:67535546-67535565 None:intergenic 25.0%
! ATTACTTGTTTAAGTCTTTG+TGG - chr8_2:67535612-67535631 Msa1264180:three_prime_UTR 25.0%
!!! GCATTTTAACTACATATCAT+TGG + chr8_2:67535785-67535804 None:intergenic 25.0%
!!! GAATCGATTCTATTTTCAAA+AGG - chr8_2:67535944-67535963 Msa1264180:three_prime_UTR 25.0%
! TGAGATGAAGAATAACAATA+AGG + chr8_2:67536336-67536355 None:intergenic 25.0%
! TTAAAAATTTGGACCTATTC+CGG - chr8_2:67536429-67536448 Msa1264180:intron 25.0%
! TTTCATGTGATAAAAGAAAG+GGG - chr8_2:67536543-67536562 Msa1264180:intron 25.0%
!!! AGTGTCATTTACTATTTAGA+AGG - chr8_2:67536700-67536719 Msa1264180:intron 25.0%
! ACTATTTAGAAGGATTCATA+AGG - chr8_2:67536710-67536729 Msa1264180:intron 25.0%
! AAGGATTCATAAGGAATAAA+GGG - chr8_2:67536719-67536738 Msa1264180:intron 25.0%
! ATGTCTAATACAAAGTCAAT+CGG + chr8_2:67536750-67536769 None:intergenic 25.0%
! TTTATTTGTTTATTGGCAGT+TGG - chr8_2:67536788-67536807 Msa1264180:intron 25.0%
!! AAACTTGAGTAACTATCTTT+TGG + chr8_2:67536853-67536872 None:intergenic 25.0%
!!! ATAGTTACTCAAGTTTGTTA+AGG - chr8_2:67536857-67536876 Msa1264180:intron 25.0%
!! TTTTCATCAATCCCAAATTA+AGG + chr8_2:67536949-67536968 None:intergenic 25.0%
! TAATCTGAATTTACGGATAT+TGG - chr8_2:67537206-67537225 Msa1264180:intron 25.0%
!! TTGTAGATTTTTGAATGTCA+TGG + chr8_2:67537469-67537488 None:intergenic 25.0%
! AATACAAAAGTCAACTACAT+AGG + chr8_2:67538019-67538038 None:intergenic 25.0%
!!! CATACAAAAAGCTATTTTCA+GGG + chr8_2:67538119-67538138 Msa1264190:CDS 25.0%
! TGATAGAATCATTGCAAATT+TGG + chr8_2:67538179-67538198 Msa1264190:CDS 25.0%
CCTTACAAGTTACAACAATT+AGG + chr8_2:67535343-67535362 None:intergenic 30.0%
! CCTAATTGTTGTAACTTGTA+AGG - chr8_2:67535340-67535359 Msa1264180:three_prime_UTR 30.0%
CAATTAACAACAATTAGGGT+TGG + chr8_2:67535438-67535457 None:intergenic 30.0%
! TTTTAATCATAGCCTAGTGA+TGG - chr8_2:67535572-67535591 Msa1264180:three_prime_UTR 30.0%
!! ATTAAGCTTTGAATTTGGAG+CGG + chr8_2:67535720-67535739 None:intergenic 30.0%
!! ACTCCATTAAGCTTTGAATT+TGG + chr8_2:67535725-67535744 None:intergenic 30.0%
AAATTCAAAGCTTAATGGAG+TGG - chr8_2:67535724-67535743 Msa1264180:three_prime_UTR 30.0%
!! CACAACTTTAAAGTACTAAC+CGG - chr8_2:67535875-67535894 Msa1264180:three_prime_UTR 30.0%
TGCATAAATGTAGTTTCTTC+CGG + chr8_2:67535897-67535916 None:intergenic 30.0%
! CGATTCTATTTTCAAAAGGA+AGG - chr8_2:67535948-67535967 Msa1264180:three_prime_UTR 30.0%
!!! CTTCATCCGATATTGTTTTT+TGG - chr8_2:67536004-67536023 Msa1264180:three_prime_UTR 30.0%
! TTGTTATTCTTCATCTCACT+TGG - chr8_2:67536338-67536357 Msa1264180:intron 30.0%
GAAGGATTCATAAGGAATAA+AGG - chr8_2:67536718-67536737 Msa1264180:intron 30.0%
AGGATTCATAAGGAATAAAG+GGG - chr8_2:67536720-67536739 Msa1264180:intron 30.0%
! GCATGATAAATTTGGGATTA+TGG + chr8_2:67536908-67536927 None:intergenic 30.0%
GGAATTGGCATGATAAATTT+GGG + chr8_2:67536915-67536934 None:intergenic 30.0%
! TCATCAGCAACACTAATTTT+AGG - chr8_2:67537171-67537190 Msa1264180:intron 30.0%
AACTTCTTGATTACAAACGA+GGG - chr8_2:67537582-67537601 Msa1264180:intron 30.0%
ATGGAATCTTCTATCTCAAT+GGG + chr8_2:67537848-67537867 None:intergenic 30.0%
AAAGTTAACTAATATCTGCC+CGG + chr8_2:67537928-67537947 None:intergenic 30.0%
! CTTTTGTATTAGAGTCTTCT+TGG - chr8_2:67538029-67538048 Msa1264180:CDS 30.0%
!! CCATACAAAAAGCTATTTTC+AGG + chr8_2:67538120-67538139 Msa1264190:CDS 30.0%
! CCTGAAAATAGCTTTTTGTA+TGG - chr8_2:67538117-67538136 Msa1264180:CDS 30.0%
TGATTCTATCAAACTTACTG+TGG - chr8_2:67538188-67538207 Msa1264180:CDS 30.0%
TTCACTTTCTTGTTCTCACT+TGG + chr8_2:67535163-67535182 None:intergenic 35.0%
GTGAGAACAAGAAAGTGAAA+CGG - chr8_2:67535164-67535183 Msa1264180:three_prime_UTR 35.0%
TGAGAACAAGAAAGTGAAAC+GGG - chr8_2:67535165-67535184 Msa1264180:three_prime_UTR 35.0%
GCTCTCTAAATTGAAGAAGA+AGG + chr8_2:67535299-67535318 None:intergenic 35.0%
GTTACAACAATTAGGGTTTG+TGG + chr8_2:67535335-67535354 None:intergenic 35.0%
TAGAAAGTGAAACCATCACT+AGG + chr8_2:67535587-67535606 None:intergenic 35.0%
AAGTCTTTGTGGCAAATTCT+TGG - chr8_2:67535623-67535642 Msa1264180:three_prime_UTR 35.0%
GCTCCAAATTCAAAGCTTAA+TGG - chr8_2:67535719-67535738 Msa1264180:three_prime_UTR 35.0%
!! GTACTTTAAAGTTGTGCAAG+CGG + chr8_2:67535871-67535890 None:intergenic 35.0%
!!! CATCCGATATTGTTTTTTGG+CGG - chr8_2:67536007-67536026 Msa1264180:three_prime_UTR 35.0%
GGTATAGTTGGAAACGAATT+TGG - chr8_2:67536064-67536083 Msa1264180:three_prime_UTR 35.0%
ATAGTTGGAAACGAATTTGG+AGG - chr8_2:67536067-67536086 Msa1264180:three_prime_UTR 35.0%
GTTTCCACAAAGCTAGAAAT+TGG + chr8_2:67536127-67536146 None:intergenic 35.0%
TGTCCAAACATCTACAAAAG+TGG - chr8_2:67536200-67536219 Msa1264180:CDS 35.0%
!! TCACCACTTTTGTAGATGTT+TGG + chr8_2:67536206-67536225 None:intergenic 35.0%
AATAACAATAAGGTTGCTGC+CGG + chr8_2:67536326-67536345 None:intergenic 35.0%
!! TTGTTGTTTGAGCAAGTACT+CGG - chr8_2:67536452-67536471 Msa1264180:intron 35.0%
CACATGAAATTGAATCCCAT+TGG + chr8_2:67536532-67536551 None:intergenic 35.0%
GAAGCAATTTGACAAACAGT+TGG + chr8_2:67536622-67536641 None:intergenic 35.0%
GGATTCATAAGGAATAAAGG+GGG - chr8_2:67536721-67536740 Msa1264180:intron 35.0%
GATTCATAAGGAATAAAGGG+GGG - chr8_2:67536722-67536741 Msa1264180:intron 35.0%
GGGAATTGGCATGATAAATT+TGG + chr8_2:67536916-67536935 None:intergenic 35.0%
TCATCAATCCCAAATTAAGG+CGG + chr8_2:67536946-67536965 None:intergenic 35.0%
GATGAAAATGCTTGAACATC+AGG - chr8_2:67536961-67536980 Msa1264180:intron 35.0%
!! GTGATGTTCAATCACTTTTC+AGG - chr8_2:67537052-67537071 Msa1264180:intron 35.0%
TCATGCAAGAGACATTGTTA+AGG + chr8_2:67537292-67537311 None:intergenic 35.0%
TAAGCTGAAGCTTATACTGA+TGG + chr8_2:67537496-67537515 None:intergenic 35.0%
AGTATAAGCTTCAGCTTAAC+TGG - chr8_2:67537498-67537517 Msa1264180:intron 35.0%
GTATAAGCTTCAGCTTAACT+GGG - chr8_2:67537499-67537518 Msa1264180:intron 35.0%
TCTCATTAATTCCATGCTTG+AGG + chr8_2:67537529-67537548 None:intergenic 35.0%
TAATGAGAAGTCTACTGTTC+TGG - chr8_2:67537541-67537560 Msa1264180:intron 35.0%
GAACTTCTTGATTACAAACG+AGG - chr8_2:67537581-67537600 Msa1264180:intron 35.0%
AAAGCCTAAGATGCTTTCAA+TGG - chr8_2:67537655-67537674 Msa1264180:intron 35.0%
AAGCCTAAGATGCTTTCAAT+GGG - chr8_2:67537656-67537675 Msa1264180:intron 35.0%
TCATCATCTAATGCAACTGA+AGG + chr8_2:67537749-67537768 None:intergenic 35.0%
TCAGTTGCATTAGATGATGA+AGG - chr8_2:67537749-67537768 Msa1264180:intron 35.0%
AGTACATTATTGCAGAACAC+AGG - chr8_2:67537786-67537805 Msa1264180:intron 35.0%
CATGGAATCTTCTATCTCAA+TGG + chr8_2:67537849-67537868 None:intergenic 35.0%
CACTTATAGATATGCTTGAC+CGG - chr8_2:67537906-67537925 Msa1264180:intron 35.0%
ACTTATAGATATGCTTGACC+GGG - chr8_2:67537907-67537926 Msa1264180:intron 35.0%
AGGGCTCTTAAAATATTCCA+TGG + chr8_2:67538100-67538119 None:intergenic 35.0%
AACATTTGCCTCATTCTTAG+CGG + chr8_2:67538150-67538169 Msa1264190:CDS 35.0%
!! TGGATCGATTTGCTATGCTT+GGG + chr8_2:67535204-67535223 None:intergenic 40.0%
AAGAAGAAGGAGAGTAATCG+CGG + chr8_2:67535286-67535305 None:intergenic 40.0%
TTGTTCTTTGCCCTTTGGTT+TGG - chr8_2:67535467-67535486 Msa1264180:three_prime_UTR 40.0%
AAGGTTACGACCAAACCAAA+GGG + chr8_2:67535480-67535499 None:intergenic 40.0%
TAAGGTTACGACCAAACCAA+AGG + chr8_2:67535481-67535500 None:intergenic 40.0%
TCTTTGTGGCAAATTCTTGG+AGG - chr8_2:67535626-67535645 Msa1264180:three_prime_UTR 40.0%
CAAAGCTTAATGGAGTGGAA+TGG - chr8_2:67535729-67535748 Msa1264180:three_prime_UTR 40.0%
TGGCCGCCAAAAAACAATAT+CGG + chr8_2:67536013-67536032 None:intergenic 40.0%
GAGCCAGACAAAAAAGTTTG+GGG + chr8_2:67536036-67536055 None:intergenic 40.0%
GGAGCCAGACAAAAAAGTTT+GGG + chr8_2:67536037-67536056 None:intergenic 40.0%
!! AGCTCCAATTTCTAGCTTTG+TGG - chr8_2:67536120-67536139 Msa1264180:three_prime_UTR 40.0%
GATGTTTGGACAACTGCAAA+CGG + chr8_2:67536192-67536211 None:intergenic 40.0%
ACTCTGTAAACTCACGTTTG+AGG - chr8_2:67536237-67536256 Msa1264180:intron 40.0%
!!! AGAACACGTTTTAGAGAGAC+AGG + chr8_2:67536386-67536405 None:intergenic 40.0%
GTACTTGCTCAAACAACAAC+CGG + chr8_2:67536451-67536470 None:intergenic 40.0%
TTTGAGCAAGTACTCGGTTA+TGG - chr8_2:67536458-67536477 Msa1264180:intron 40.0%
TTTGCTTGACAGACATGAAC+TGG + chr8_2:67536500-67536519 None:intergenic 40.0%
GCAATTTGACAAACAGTTGG+AGG + chr8_2:67536619-67536638 None:intergenic 40.0%
! ATTGGCAGTTGGAGATTTTC+TGG - chr8_2:67536799-67536818 Msa1264180:intron 40.0%
! TTGGCAGTTGGAGATTTTCT+GGG - chr8_2:67536800-67536819 Msa1264180:intron 40.0%
!! CAAATTAAGGCGGGTATTGA+GGG + chr8_2:67536936-67536955 None:intergenic 40.0%
CTCAATACCCGCCTTAATTT+GGG - chr8_2:67536935-67536954 Msa1264180:intron 40.0%
CATCAATCCCAAATTAAGGC+GGG + chr8_2:67536945-67536964 None:intergenic 40.0%
! ATTTTACAGTGAGCATGTGC+TGG - chr8_2:67537120-67537139 Msa1264180:intron 40.0%
! AGTGTTGCTGATGACGAAAT+TGG + chr8_2:67537165-67537184 None:intergenic 40.0%
GAATTTACGGATATTGGCAG+TGG - chr8_2:67537212-67537231 Msa1264180:intron 40.0%
TGCAAGAGACATTGTTAAGG+AGG + chr8_2:67537289-67537308 None:intergenic 40.0%
GTGAATGTCTCTCTTCATGA+TGG - chr8_2:67537338-67537357 Msa1264180:intron 40.0%
AATGTCTCTCTTCATGATGG+AGG - chr8_2:67537341-67537360 Msa1264180:intron 40.0%
! ATGTCTCTCTTCATGATGGA+GGG - chr8_2:67537342-67537361 Msa1264180:intron 40.0%
TCTTGATTACAAACGAGGGA+AGG - chr8_2:67537586-67537605 Msa1264180:intron 40.0%
!! TAAGCTTGCACTTGAGTTGA+TGG - chr8_2:67537610-67537629 Msa1264180:intron 40.0%
!! AAGCTTGCACTTGAGTTGAT+GGG - chr8_2:67537611-67537630 Msa1264180:intron 40.0%
TATTGCAGAACACAGGAAAC+AGG - chr8_2:67537793-67537812 Msa1264180:intron 40.0%
ATTGCAGAACACAGGAAACA+GGG - chr8_2:67537794-67537813 Msa1264180:intron 40.0%
TAGAAGATTCCATGCTCTTG+AGG - chr8_2:67537855-67537874 Msa1264180:intron 40.0%
TCTATAAGTGTCATCCTCCT+TGG + chr8_2:67537896-67537915 None:intergenic 40.0%
! CATGGAAGATACAAGAGCAT+AGG + chr8_2:67538082-67538101 None:intergenic 40.0%
CTATGCTCTTGTATCTTCCA+TGG - chr8_2:67538080-67538099 Msa1264180:CDS 40.0%
GTAGTATACCGCTAAGAATG+AGG - chr8_2:67538139-67538158 Msa1264180:CDS 40.0%
GCTATGCTTGGGAGAAGAAA+AGG + chr8_2:67535193-67535212 None:intergenic 45.0%
!! GTGGATCGATTTGCTATGCT+TGG + chr8_2:67535205-67535224 None:intergenic 45.0%
ACCTGTTGTTCTTTGCCCTT+TGG - chr8_2:67535462-67535481 Msa1264180:three_prime_UTR 45.0%
ACCAAAGGGCAAAGAACAAC+AGG + chr8_2:67535466-67535485 None:intergenic 45.0%
CCAGACAAAAAAGTTTGGGG+TGG + chr8_2:67536033-67536052 None:intergenic 45.0%
!!! CCACCCCAAACTTTTTTGTC+TGG - chr8_2:67536030-67536049 Msa1264180:three_prime_UTR 45.0%
CGGAGCCAGACAAAAAAGTT+TGG + chr8_2:67536038-67536057 None:intergenic 45.0%
TTTCCAACTATACCCAGTGG+CGG + chr8_2:67536058-67536077 None:intergenic 45.0%
TCGTTTCCAACTATACCCAG+TGG + chr8_2:67536061-67536080 None:intergenic 45.0%
GCTTTGTGGAAACGTGAGTT+TGG - chr8_2:67536134-67536153 Msa1264180:three_prime_UTR 45.0%
GCTCAAACAACAACCGGAAT+AGG + chr8_2:67536445-67536464 None:intergenic 45.0%
ACAGTTGGAGGACAACAACT+AGG + chr8_2:67536607-67536626 None:intergenic 45.0%
! TGGCAGTTGGAGATTTTCTG+GGG - chr8_2:67536801-67536820 Msa1264180:intron 45.0%
! AGGTGAGTGCTCTTTTGTTC+CGG - chr8_2:67536877-67536896 Msa1264180:intron 45.0%
! ATTTGGGATTATGGTCACCC+CGG + chr8_2:67536899-67536918 None:intergenic 45.0%
! CCAAATTAAGGCGGGTATTG+AGG + chr8_2:67536937-67536956 None:intergenic 45.0%
CCTCAATACCCGCCTTAATT+TGG - chr8_2:67536934-67536953 Msa1264180:intron 45.0%
ATTGTTAAGGAGGAGACGAG+GGG + chr8_2:67537279-67537298 None:intergenic 45.0%
CATTGTTAAGGAGGAGACGA+GGG + chr8_2:67537280-67537299 None:intergenic 45.0%
ACATTGTTAAGGAGGAGACG+AGG + chr8_2:67537281-67537300 None:intergenic 45.0%
CACATTAGACAGAACTTGCG+AGG + chr8_2:67537321-67537340 None:intergenic 45.0%
! TGTCTCTCTTCATGATGGAG+GGG - chr8_2:67537343-67537362 Msa1264180:intron 45.0%
CTTGTGCTAACAGGTGCAAA+TGG - chr8_2:67537368-67537387 Msa1264180:intron 45.0%
AGCTAACATGCGCATGAAAG+TGG + chr8_2:67537405-67537424 None:intergenic 45.0%
ACTTTCATGCGCATGTTAGC+TGG - chr8_2:67537404-67537423 Msa1264180:intron 45.0%
CTTTCATGCGCATGTTAGCT+GGG - chr8_2:67537405-67537424 Msa1264180:intron 45.0%
CAAAGGATTTCTCCTGCAGA+CGG + chr8_2:67537440-67537459 None:intergenic 45.0%
! GCAGGAGAAATCCTTTGGAA+TGG - chr8_2:67537443-67537462 Msa1264180:intron 45.0%
GAATGTCATGGCCATTCCAA+AGG + chr8_2:67537457-67537476 None:intergenic 45.0%
!! TGGCCCATTGAAAGCATCTT+AGG + chr8_2:67537662-67537681 None:intergenic 45.0%
! CAAGTTGCAATCTTTTCCGC+TGG + chr8_2:67537682-67537701 None:intergenic 45.0%
ACAGGGAGGAATTGTGATTG+TGG - chr8_2:67537811-67537830 Msa1264180:intron 45.0%
!!! TTTTTAAAATGAATATTAAT+TGG + chr8_2:67536416-67536435 None:intergenic 5.0%
!!! TAATATTCATTTTAAAAATT+TGG - chr8_2:67536418-67536437 Msa1264180:intron 5.0%
!!! TTAAAATTTTATTTGTTTAT+TGG - chr8_2:67536781-67536800 Msa1264180:intron 5.0%
TGGATGGAGAAAGAGGAGAG+TGG + chr8_2:67535257-67535276 None:intergenic 50.0%
AAGAAGGAGAGTAATCGCGG+CGG + chr8_2:67535283-67535302 None:intergenic 50.0%
! GGTTTTACGCTGGCGAGAAA+GGG + chr8_2:67536305-67536324 None:intergenic 50.0%
CTTTCTCGCCAGCGTAAAAC+CGG - chr8_2:67536304-67536323 Msa1264180:intron 50.0%
! GGCAGTTGGAGATTTTCTGG+GGG - chr8_2:67536802-67536821 Msa1264180:intron 50.0%
!! TGGAGATTTTCTGGGGGATG+AGG - chr8_2:67536808-67536827 Msa1264180:intron 50.0%
! GGTGAGTGCTCTTTTGTTCC+GGG - chr8_2:67536878-67536897 Msa1264180:intron 50.0%
! GTGAGTGCTCTTTTGTTCCG+GGG - chr8_2:67536879-67536898 Msa1264180:intron 50.0%
!! AAGGCGGGTATTGAGGGAAT+TGG + chr8_2:67536930-67536949 None:intergenic 50.0%
TTGTTAAGGAGGAGACGAGG+GGG + chr8_2:67537278-67537297 None:intergenic 50.0%
GCTAACAGGTGCAAATGGCT+CGG - chr8_2:67537373-67537392 Msa1264180:intron 50.0%
CTAACAGGTGCAAATGGCTC+GGG - chr8_2:67537374-67537393 Msa1264180:intron 50.0%
CGTCTGCAGGAGAAATCCTT+TGG - chr8_2:67537438-67537457 Msa1264180:intron 50.0%
!! TGCACTTGAGTTGATGGGAC+TGG - chr8_2:67537616-67537635 Msa1264180:intron 50.0%
!! GCACTTGAGTTGATGGGACT+GGG - chr8_2:67537617-67537636 Msa1264180:intron 50.0%
! GTTGATGGGACTGGGAAGAT+TGG - chr8_2:67537625-67537644 Msa1264180:intron 50.0%
AGATGCTTTCAATGGGCCAG+CGG - chr8_2:67537663-67537682 Msa1264180:intron 50.0%
GCGATCAATTGCGAGCAATC+TGG + chr8_2:67537705-67537724 None:intergenic 50.0%
TCGCAATTGATCGCCCCATA+TGG - chr8_2:67537711-67537730 Msa1264180:intron 50.0%
GCTCGTCTAGCAACCATATG+GGG + chr8_2:67537727-67537746 None:intergenic 50.0%
GGCTCGTCTAGCAACCATAT+GGG + chr8_2:67537728-67537747 None:intergenic 50.0%
AGGCTCGTCTAGCAACCATA+TGG + chr8_2:67537729-67537748 None:intergenic 50.0%
ATCCTCCTTGGAAACCTTGG+TGG + chr8_2:67537884-67537903 None:intergenic 50.0%
GTCATCCTCCTTGGAAACCT+TGG + chr8_2:67537887-67537906 None:intergenic 50.0%
GAAAGAGGAGAGTGGTCTCG+CGG + chr8_2:67535249-67535268 None:intergenic 55.0%
!! GCGGTGATGGATGGAGAAAG+AGG + chr8_2:67535264-67535283 None:intergenic 55.0%
!! TTTTTGTCTGGCTCCGCCAC+TGG - chr8_2:67536042-67536061 Msa1264180:three_prime_UTR 55.0%
!! TTTTGTCTGGCTCCGCCACT+GGG - chr8_2:67536043-67536062 Msa1264180:three_prime_UTR 55.0%
AAGGGATGGGCAGCGATGAT+GGG + chr8_2:67536287-67536306 None:intergenic 55.0%
AAAGGGATGGGCAGCGATGA+TGG + chr8_2:67536288-67536307 None:intergenic 55.0%
TACGCTGGCGAGAAAGGGAT+GGG + chr8_2:67536300-67536319 None:intergenic 55.0%
TTACGCTGGCGAGAAAGGGA+TGG + chr8_2:67536301-67536320 None:intergenic 55.0%
! CGGTTTTACGCTGGCGAGAA+AGG + chr8_2:67536306-67536325 None:intergenic 55.0%
AACTGGGTCTGCCTCAAGCA+TGG - chr8_2:67537515-67537534 Msa1264180:intron 55.0%
! GGGACTGGGAAGATTGGCTA+AGG - chr8_2:67537631-67537650 Msa1264180:intron 55.0%
GCAGAACACAGGAAACAGGG+AGG - chr8_2:67537797-67537816 Msa1264180:intron 55.0%
TGCCACCAAGGTTTCCAAGG+AGG - chr8_2:67537879-67537898 Msa1264180:intron 55.0%
ATCCACCACTACACCACCGC+CGG - chr8_2:67535219-67535238 Msa1264180:three_prime_UTR 60.0%
!! GTAATCGCGGCGGTGATGGA+TGG + chr8_2:67535273-67535292 None:intergenic 60.0%
GAGAGTAATCGCGGCGGTGA+TGG + chr8_2:67535277-67535296 None:intergenic 60.0%
GCTCCGCCACTGGGTATAGT+TGG - chr8_2:67536052-67536071 Msa1264180:three_prime_UTR 60.0%
!! GCAGCGATGATGGGGCTGTT+TGG + chr8_2:67536278-67536297 None:intergenic 60.0%
AGGGATGGGCAGCGATGATG+GGG + chr8_2:67536286-67536305 None:intergenic 60.0%
!!! GGTTGCTGCCGGTTTTACGC+TGG + chr8_2:67536315-67536334 None:intergenic 60.0%
GGGGGATGAGGACTCATGTC+TGG - chr8_2:67536820-67536839 Msa1264180:intron 60.0%
TTAAGGAGGAGACGAGGGGG+TGG + chr8_2:67537275-67537294 None:intergenic 60.0%
!! GGAGGGGCACTTGTGCTAAC+AGG - chr8_2:67537359-67537378 Msa1264180:intron 60.0%
! GGGTTTTCTCGTCCGTCTGC+AGG - chr8_2:67537425-67537444 Msa1264180:intron 60.0%
TGGTGGCAGCCTCAAGAGCA+TGG + chr8_2:67537867-67537886 None:intergenic 60.0%
TGCTCTTGAGGCTGCCACCA+AGG - chr8_2:67537867-67537886 Msa1264180:intron 60.0%
GGCTGCCACCAAGGTTTCCA+AGG - chr8_2:67537876-67537895 Msa1264180:intron 60.0%
AGAGTGGTCTCGCGGCTCAC+CGG + chr8_2:67535241-67535260 None:intergenic 65.0%
CACCGGCGGTGGTGTAGTGG+TGG + chr8_2:67535224-67535243 None:intergenic 70.0%
GCTCACCGGCGGTGGTGTAG+TGG + chr8_2:67535227-67535246 None:intergenic 70.0%
AGGAGGAGACGAGGGGGTGG+AGG + chr8_2:67537272-67537291 None:intergenic 70.0%
GTGGTCTCGCGGCTCACCGG+CGG + chr8_2:67535238-67535257 None:intergenic 75.0%
! GTCTCGCGGCTCACCGGCGG+TGG + chr8_2:67535235-67535254 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 67535160 67538221 67535160 ID=Msa1264180;Name=Msa1264180
chr8_2 mRNA 67535160 67538221 67535160 ID=Msa1264180-mRNA-1;Parent=Msa1264180;Name=Msa1264180-mRNA-1;_AED=0.26;_eAED=0.26;_QI=0|0|0.5|1|0|0|2|1035|84
chr8_2 exon 67535160 67536252 67535160 ID=Msa1264180-mRNA-1:exon:22268;Parent=Msa1264180-mRNA-1
chr8_2 exon 67538025 67538221 67538025 ID=Msa1264180-mRNA-1:exon:22267;Parent=Msa1264180-mRNA-1
chr8_2 CDS 67538025 67538221 67538025 ID=Msa1264180-mRNA-1:cds;Parent=Msa1264180-mRNA-1
chr8_2 CDS 67536195 67536252 67536195 ID=Msa1264180-mRNA-1:cds;Parent=Msa1264180-mRNA-1
chr8_2 three_prime_UTR 67535160 67536194 67535160 ID=Msa1264180-mRNA-1:three_prime_utr;Parent=Msa1264180-mRNA-1
Gene Sequence

>Msa1264180

CCAAGTGAGAACAAGAAAGTGAAACGGGATCCTTTTCTTCTCCCAAGCATAGCAAATCGATCCACCACTACACCACCGCCGGTGAGCCGCGAGACCACTCTCCTCTTTCTCCATCCATCACCGCCGCGATTACTCTCCTTCTTCTTCAATTTAGAGAGCTTTCTTCATCTCTCCACAAACCCTAATTGTTGTAACTTTGAGCATGTGCTGGAGATGCTTTGTGATTTGCGCCAATTTCGTCATCAGCAACACTAA

Protein sequence

>Msa1264180

PSENKKVKRDPFLLPSIANRSTTTPPPVSRETTLLFLHPSPPRLLSFFFNLESFLHLSTNPNCCNFEHVLEMLCDLRQFRHQQH*