Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
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Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
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Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
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Gene ID | Type | Classification |
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Gene ID | Type | Classification |
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Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa1222840 | Msa1264180 | 0.916540 | 1.576187e-85 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
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Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
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Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
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Find 102 sgRNAs with CRISPR-Local
Find 233 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TAATCTGAATTTACGGATAT+TGG | 0.214611 | 8_2:-67536153 | Msa1264180:three_prime_UTR |
TGATAGAATCATTGCAAATT+TGG | 0.230560 | 8_2:+67535183 | None:intergenic |
AGTATAAGCTTCAGCTTAAC+TGG | 0.248424 | 8_2:-67535861 | Msa1264180:three_prime_UTR |
CCTTACAAGTTACAACAATT+AGG | 0.258445 | 8_2:+67538019 | None:intergenic |
AAATGCTTGTTGCAGTAAAT+TGG | 0.289252 | 8_2:+67535146 | None:intergenic |
ACTTTCATGCGCATGTTAGC+TGG | 0.296912 | 8_2:-67535955 | Msa1264180:three_prime_UTR |
CTTACAAGTTACAACAATTA+GGG | 0.315535 | 8_2:+67538020 | None:intergenic |
TGGCCCATTGAAAGCATCTT+AGG | 0.319230 | 8_2:+67535700 | None:intergenic |
AAAGCATTAATCTGAATTTA+CGG | 0.323920 | 8_2:-67536160 | Msa1264180:three_prime_UTR |
TAATGAGAAGTCTACTGTTC+TGG | 0.350793 | 8_2:-67535818 | Msa1264180:three_prime_UTR |
TATTGCAGAACACAGGAAAC+AGG | 0.372464 | 8_2:-67535566 | Msa1264180:three_prime_UTR |
TAAGCTTGCACTTGAGTTGA+TGG | 0.405805 | 8_2:-67535749 | Msa1264180:three_prime_UTR |
AGTGTTGCTGATGACGAAAT+TGG | 0.408655 | 8_2:+67536197 | None:intergenic |
CGTCTGCAGGAGAAATCCTT+TGG | 0.429605 | 8_2:-67535921 | Msa1264180:three_prime_UTR |
TTCACTTTCTTGTTCTCACT+TGG | 0.432528 | 8_2:+67538199 | Msa1264190:CDS |
GCTATGCTTGGGAGAAGAAA+AGG | 0.440622 | 8_2:+67538169 | Msa1264190:CDS |
GTGGATCGATTTGCTATGCT+TGG | 0.441553 | 8_2:+67538157 | Msa1264190:CDS |
GTTACAACAATTAGGGTTTG+TGG | 0.445339 | 8_2:+67538027 | None:intergenic |
CTTGTGCTAACAGGTGCAAA+TGG | 0.445397 | 8_2:-67535991 | Msa1264180:three_prime_UTR |
TGCACTTGAGTTGATGGGAC+TGG | 0.458658 | 8_2:-67535743 | Msa1264180:three_prime_UTR |
GGCTCGTCTAGCAACCATAT+GGG | 0.461520 | 8_2:+67535634 | None:intergenic |
AACATTTGCCTCATTCTTAG+CGG | 0.462342 | 8_2:+67535212 | None:intergenic |
CATGGAATCTTCTATCTCAA+TGG | 0.462552 | 8_2:+67535513 | None:intergenic |
GCACTTGAGTTGATGGGACT+GGG | 0.464272 | 8_2:-67535742 | Msa1264180:three_prime_UTR |
TGAGAACAAGAAAGTGAAAC+GGG | 0.466782 | 8_2:-67538194 | Msa1264180:CDS |
GGAGGGGCACTTGTGCTAAC+AGG | 0.470048 | 8_2:-67536000 | Msa1264180:three_prime_UTR |
GTCTCGCGGCTCACCGGCGG+TGG | 0.470064 | 8_2:+67538127 | Msa1264190:CDS |
GCGATCAATTGCGAGCAATC+TGG | 0.470226 | 8_2:+67535657 | None:intergenic |
ATCCTCCTTGGAAACCTTGG+TGG | 0.473105 | 8_2:+67535478 | None:intergenic |
GAGAGTAATCGCGGCGGTGA+TGG | 0.473154 | 8_2:+67538085 | None:intergenic |
TCTATAAGTGTCATCCTCCT+TGG | 0.473498 | 8_2:+67535466 | None:intergenic |
TCGCAATTGATCGCCCCATA+TGG | 0.474072 | 8_2:-67535648 | Msa1264180:three_prime_UTR |
AGCTAACATGCGCATGAAAG+TGG | 0.475025 | 8_2:+67535957 | None:intergenic |
AGGCTCGTCTAGCAACCATA+TGG | 0.475048 | 8_2:+67535633 | None:intergenic |
CTTTCATGCGCATGTTAGCT+GGG | 0.479202 | 8_2:-67535954 | Msa1264180:three_prime_UTR |
CACTTATAGATATGCTTGAC+CGG | 0.480974 | 8_2:-67535453 | Msa1264180:three_prime_UTR |
ATGGAATCTTCTATCTCAAT+GGG | 0.487729 | 8_2:+67535514 | None:intergenic |
GTTGATGGGACTGGGAAGAT+TGG | 0.488958 | 8_2:-67535734 | Msa1264180:three_prime_UTR |
AAAGCCTAAGATGCTTTCAA+TGG | 0.493892 | 8_2:-67535704 | Msa1264180:three_prime_UTR |
AGAGTGGTCTCGCGGCTCAC+CGG | 0.494837 | 8_2:+67538121 | Msa1264190:CDS |
TCATGCAAGAGACATTGTTA+AGG | 0.501277 | 8_2:+67536070 | None:intergenic |
GCTCTCTAAATTGAAGAAGA+AGG | 0.503109 | 8_2:+67538063 | None:intergenic |
GTCATCCTCCTTGGAAACCT+TGG | 0.511121 | 8_2:+67535475 | None:intergenic |
GAATTTACGGATATTGGCAG+TGG | 0.521100 | 8_2:-67536147 | Msa1264180:three_prime_UTR |
CACCGGCGGTGGTGTAGTGG+TGG | 0.525785 | 8_2:+67538138 | Msa1264190:CDS |
TGCTCTTGAGGCTGCCACCA+AGG | 0.526833 | 8_2:-67535492 | Msa1264180:three_prime_UTR |
AGGGCTCTTAAAATATTCCA+TGG | 0.529631 | 8_2:+67535262 | None:intergenic |
GTGAGAACAAGAAAGTGAAA+CGG | 0.534171 | 8_2:-67538195 | Msa1264180:CDS |
GGCTGCCACCAAGGTTTCCA+AGG | 0.535052 | 8_2:-67535483 | Msa1264180:three_prime_UTR |
GTAATCGCGGCGGTGATGGA+TGG | 0.535283 | 8_2:+67538089 | None:intergenic |
CTATGCTCTTGTATCTTCCA+TGG | 0.538427 | 8_2:-67535279 | Msa1264180:three_prime_UTR |
GAATGTCATGGCCATTCCAA+AGG | 0.538492 | 8_2:+67535905 | None:intergenic |
AATGTCTCTCTTCATGATGG+AGG | 0.538799 | 8_2:-67536018 | Msa1264180:three_prime_UTR |
AAGCCTAAGATGCTTTCAAT+GGG | 0.539281 | 8_2:-67535703 | Msa1264180:three_prime_UTR |
TCAGTTGCATTAGATGATGA+AGG | 0.540951 | 8_2:-67535610 | Msa1264180:three_prime_UTR |
GCTAACAGGTGCAAATGGCT+CGG | 0.541340 | 8_2:-67535986 | Msa1264180:three_prime_UTR |
CTAACAGGTGCAAATGGCTC+GGG | 0.543916 | 8_2:-67535985 | Msa1264180:three_prime_UTR |
ACATTGTTAAGGAGGAGACG+AGG | 0.550534 | 8_2:+67536081 | None:intergenic |
AATACAAAAGTCAACTACAT+AGG | 0.554009 | 8_2:+67535343 | None:intergenic |
TAAGCTGAAGCTTATACTGA+TGG | 0.554659 | 8_2:+67535866 | None:intergenic |
AAGCTTGCACTTGAGTTGAT+GGG | 0.556728 | 8_2:-67535748 | Msa1264180:three_prime_UTR |
TGGATCGATTTGCTATGCTT+GGG | 0.557084 | 8_2:+67538158 | Msa1264190:CDS |
ATGTCTCTCTTCATGATGGA+GGG | 0.559238 | 8_2:-67536017 | Msa1264180:three_prime_UTR |
AACTGGGTCTGCCTCAAGCA+TGG | 0.564032 | 8_2:-67535844 | Msa1264180:three_prime_UTR |
ACAGGGAGGAATTGTGATTG+TGG | 0.566283 | 8_2:-67535548 | Msa1264180:three_prime_UTR |
GCTCACCGGCGGTGGTGTAG+TGG | 0.568544 | 8_2:+67538135 | Msa1264190:CDS |
TGGTGGCAGCCTCAAGAGCA+TGG | 0.568725 | 8_2:+67535495 | None:intergenic |
TCTCATTAATTCCATGCTTG+AGG | 0.569583 | 8_2:+67535833 | None:intergenic |
GCGGTGATGGATGGAGAAAG+AGG | 0.570030 | 8_2:+67538098 | None:intergenic |
TGTCTCTCTTCATGATGGAG+GGG | 0.571601 | 8_2:-67536016 | Msa1264180:three_prime_UTR |
TCTTGATTACAAACGAGGGA+AGG | 0.572184 | 8_2:-67535773 | Msa1264180:three_prime_UTR |
GTGAATGTCTCTCTTCATGA+TGG | 0.575226 | 8_2:-67536021 | Msa1264180:three_prime_UTR |
GTGGTCTCGCGGCTCACCGG+CGG | 0.583254 | 8_2:+67538124 | Msa1264190:CDS |
TAGAAGATTCCATGCTCTTG+AGG | 0.587588 | 8_2:-67535504 | Msa1264180:three_prime_UTR |
AAAGTTAACTAATATCTGCC+CGG | 0.588067 | 8_2:+67535434 | None:intergenic |
CACATTAGACAGAACTTGCG+AGG | 0.590033 | 8_2:+67536041 | None:intergenic |
GTAGTATACCGCTAAGAATG+AGG | 0.591629 | 8_2:-67535220 | Msa1264180:three_prime_UTR |
GCAGGAGAAATCCTTTGGAA+TGG | 0.592243 | 8_2:-67535916 | Msa1264180:three_prime_UTR |
CATGGAAGATACAAGAGCAT+AGG | 0.592495 | 8_2:+67535280 | None:intergenic |
TGCAAGAGACATTGTTAAGG+AGG | 0.593226 | 8_2:+67536073 | None:intergenic |
GGGACTGGGAAGATTGGCTA+AGG | 0.595370 | 8_2:-67535728 | Msa1264180:three_prime_UTR |
CAAAGGATTTCTCCTGCAGA+CGG | 0.597971 | 8_2:+67535922 | None:intergenic |
CATTGTTAAGGAGGAGACGA+GGG | 0.610651 | 8_2:+67536082 | None:intergenic |
GTATAAGCTTCAGCTTAACT+GGG | 0.615494 | 8_2:-67535860 | Msa1264180:three_prime_UTR |
TCATCATCTAATGCAACTGA+AGG | 0.627900 | 8_2:+67535613 | None:intergenic |
ATCCACCACTACACCACCGC+CGG | 0.632180 | 8_2:-67538140 | Msa1264180:CDS |
AACTTCTTGATTACAAACGA+GGG | 0.639263 | 8_2:-67535777 | Msa1264180:three_prime_UTR |
GCTCGTCTAGCAACCATATG+GGG | 0.642137 | 8_2:+67535635 | None:intergenic |
GAACTTCTTGATTACAAACG+AGG | 0.642628 | 8_2:-67535778 | Msa1264180:three_prime_UTR |
GAAAGAGGAGAGTGGTCTCG+CGG | 0.647733 | 8_2:+67538113 | Msa1264190:CDS |
TGATTCTATCAAACTTACTG+TGG | 0.651073 | 8_2:-67535171 | Msa1264180:three_prime_UTR |
TGGATGGAGAAAGAGGAGAG+TGG | 0.651784 | 8_2:+67538105 | None:intergenic |
ACTTATAGATATGCTTGACC+GGG | 0.653298 | 8_2:-67535452 | Msa1264180:three_prime_UTR |
ATTGCAGAACACAGGAAACA+GGG | 0.655611 | 8_2:-67535565 | Msa1264180:three_prime_UTR |
AGTACATTATTGCAGAACAC+AGG | 0.673742 | 8_2:-67535573 | Msa1264180:three_prime_UTR |
ATTGTTAAGGAGGAGACGAG+GGG | 0.674115 | 8_2:+67536083 | None:intergenic |
AGATGCTTTCAATGGGCCAG+CGG | 0.680942 | 8_2:-67535696 | Msa1264180:three_prime_UTR |
AAGAAGAAGGAGAGTAATCG+CGG | 0.685888 | 8_2:+67538076 | None:intergenic |
TGCCACCAAGGTTTCCAAGG+AGG | 0.687258 | 8_2:-67535480 | Msa1264180:three_prime_UTR |
TTGTTAAGGAGGAGACGAGG+GGG | 0.688535 | 8_2:+67536084 | None:intergenic |
AAGAAGGAGAGTAATCGCGG+CGG | 0.769131 | 8_2:+67538079 | None:intergenic |
GCAGAACACAGGAAACAGGG+AGG | 0.788797 | 8_2:-67535562 | Msa1264180:three_prime_UTR |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTTGTAAAATTGATTTTAA+CGG | - | chr8_2:67536090-67536109 | Msa1264180:three_prime_UTR | 10.0% |
!! | TTAACAATTAACAACAATTA+GGG | + | chr8_2:67535442-67535461 | None:intergenic | 15.0% |
!! | TTTAACAATTAACAACAATT+AGG | + | chr8_2:67535443-67535462 | None:intergenic | 15.0% |
!! | AAGTATAATATTATTGATGT+AGG | - | chr8_2:67535672-67535691 | Msa1264180:three_prime_UTR | 15.0% |
!!! | TTGTGACATTTTATTAATTT+AGG | - | chr8_2:67537990-67538009 | Msa1264180:intron | 15.0% |
!! | TGAATTTATCAACTAACAAA+AGG | + | chr8_2:67535512-67535531 | None:intergenic | 20.0% |
!!! | AAGCAAATTTTTTTTACCAA+TGG | - | chr8_2:67536513-67536532 | Msa1264180:intron | 20.0% |
!!! | AGCAAATTTTTTTTACCAAT+GGG | - | chr8_2:67536514-67536533 | Msa1264180:intron | 20.0% |
!! | AATTTCATGTGATAAAAGAA+AGG | - | chr8_2:67536541-67536560 | Msa1264180:intron | 20.0% |
!! | ATTTCATGTGATAAAAGAAA+GGG | - | chr8_2:67536542-67536561 | Msa1264180:intron | 20.0% |
!!! | AAAGCATTAATCTGAATTTA+CGG | - | chr8_2:67537199-67537218 | Msa1264180:intron | 20.0% |
! | CTTACAAGTTACAACAATTA+GGG | + | chr8_2:67535342-67535361 | None:intergenic | 25.0% |
! | CAAATCAGAATCATAATTGA+AGG | + | chr8_2:67535389-67535408 | None:intergenic | 25.0% |
! | TAACAAAAGGACAGTAAATA+AGG | + | chr8_2:67535499-67535518 | None:intergenic | 25.0% |
! | ATCTTTGTAAAGAGAGTAAA+GGG | + | chr8_2:67535545-67535564 | None:intergenic | 25.0% |
! | AATCTTTGTAAAGAGAGTAA+AGG | + | chr8_2:67535546-67535565 | None:intergenic | 25.0% |
! | ATTACTTGTTTAAGTCTTTG+TGG | - | chr8_2:67535612-67535631 | Msa1264180:three_prime_UTR | 25.0% |
!!! | GCATTTTAACTACATATCAT+TGG | + | chr8_2:67535785-67535804 | None:intergenic | 25.0% |
!!! | GAATCGATTCTATTTTCAAA+AGG | - | chr8_2:67535944-67535963 | Msa1264180:three_prime_UTR | 25.0% |
! | TGAGATGAAGAATAACAATA+AGG | + | chr8_2:67536336-67536355 | None:intergenic | 25.0% |
! | TTAAAAATTTGGACCTATTC+CGG | - | chr8_2:67536429-67536448 | Msa1264180:intron | 25.0% |
! | TTTCATGTGATAAAAGAAAG+GGG | - | chr8_2:67536543-67536562 | Msa1264180:intron | 25.0% |
!!! | AGTGTCATTTACTATTTAGA+AGG | - | chr8_2:67536700-67536719 | Msa1264180:intron | 25.0% |
! | ACTATTTAGAAGGATTCATA+AGG | - | chr8_2:67536710-67536729 | Msa1264180:intron | 25.0% |
! | AAGGATTCATAAGGAATAAA+GGG | - | chr8_2:67536719-67536738 | Msa1264180:intron | 25.0% |
! | ATGTCTAATACAAAGTCAAT+CGG | + | chr8_2:67536750-67536769 | None:intergenic | 25.0% |
! | TTTATTTGTTTATTGGCAGT+TGG | - | chr8_2:67536788-67536807 | Msa1264180:intron | 25.0% |
!! | AAACTTGAGTAACTATCTTT+TGG | + | chr8_2:67536853-67536872 | None:intergenic | 25.0% |
!!! | ATAGTTACTCAAGTTTGTTA+AGG | - | chr8_2:67536857-67536876 | Msa1264180:intron | 25.0% |
!! | TTTTCATCAATCCCAAATTA+AGG | + | chr8_2:67536949-67536968 | None:intergenic | 25.0% |
! | TAATCTGAATTTACGGATAT+TGG | - | chr8_2:67537206-67537225 | Msa1264180:intron | 25.0% |
!! | TTGTAGATTTTTGAATGTCA+TGG | + | chr8_2:67537469-67537488 | None:intergenic | 25.0% |
! | AATACAAAAGTCAACTACAT+AGG | + | chr8_2:67538019-67538038 | None:intergenic | 25.0% |
!!! | CATACAAAAAGCTATTTTCA+GGG | + | chr8_2:67538119-67538138 | Msa1264190:CDS | 25.0% |
! | TGATAGAATCATTGCAAATT+TGG | + | chr8_2:67538179-67538198 | Msa1264190:CDS | 25.0% |
CCTTACAAGTTACAACAATT+AGG | + | chr8_2:67535343-67535362 | None:intergenic | 30.0% | |
! | CCTAATTGTTGTAACTTGTA+AGG | - | chr8_2:67535340-67535359 | Msa1264180:three_prime_UTR | 30.0% |
CAATTAACAACAATTAGGGT+TGG | + | chr8_2:67535438-67535457 | None:intergenic | 30.0% | |
! | TTTTAATCATAGCCTAGTGA+TGG | - | chr8_2:67535572-67535591 | Msa1264180:three_prime_UTR | 30.0% |
!! | ATTAAGCTTTGAATTTGGAG+CGG | + | chr8_2:67535720-67535739 | None:intergenic | 30.0% |
!! | ACTCCATTAAGCTTTGAATT+TGG | + | chr8_2:67535725-67535744 | None:intergenic | 30.0% |
AAATTCAAAGCTTAATGGAG+TGG | - | chr8_2:67535724-67535743 | Msa1264180:three_prime_UTR | 30.0% | |
!! | CACAACTTTAAAGTACTAAC+CGG | - | chr8_2:67535875-67535894 | Msa1264180:three_prime_UTR | 30.0% |
TGCATAAATGTAGTTTCTTC+CGG | + | chr8_2:67535897-67535916 | None:intergenic | 30.0% | |
! | CGATTCTATTTTCAAAAGGA+AGG | - | chr8_2:67535948-67535967 | Msa1264180:three_prime_UTR | 30.0% |
!!! | CTTCATCCGATATTGTTTTT+TGG | - | chr8_2:67536004-67536023 | Msa1264180:three_prime_UTR | 30.0% |
! | TTGTTATTCTTCATCTCACT+TGG | - | chr8_2:67536338-67536357 | Msa1264180:intron | 30.0% |
GAAGGATTCATAAGGAATAA+AGG | - | chr8_2:67536718-67536737 | Msa1264180:intron | 30.0% | |
AGGATTCATAAGGAATAAAG+GGG | - | chr8_2:67536720-67536739 | Msa1264180:intron | 30.0% | |
! | GCATGATAAATTTGGGATTA+TGG | + | chr8_2:67536908-67536927 | None:intergenic | 30.0% |
GGAATTGGCATGATAAATTT+GGG | + | chr8_2:67536915-67536934 | None:intergenic | 30.0% | |
! | TCATCAGCAACACTAATTTT+AGG | - | chr8_2:67537171-67537190 | Msa1264180:intron | 30.0% |
AACTTCTTGATTACAAACGA+GGG | - | chr8_2:67537582-67537601 | Msa1264180:intron | 30.0% | |
ATGGAATCTTCTATCTCAAT+GGG | + | chr8_2:67537848-67537867 | None:intergenic | 30.0% | |
AAAGTTAACTAATATCTGCC+CGG | + | chr8_2:67537928-67537947 | None:intergenic | 30.0% | |
! | CTTTTGTATTAGAGTCTTCT+TGG | - | chr8_2:67538029-67538048 | Msa1264180:CDS | 30.0% |
!! | CCATACAAAAAGCTATTTTC+AGG | + | chr8_2:67538120-67538139 | Msa1264190:CDS | 30.0% |
! | CCTGAAAATAGCTTTTTGTA+TGG | - | chr8_2:67538117-67538136 | Msa1264180:CDS | 30.0% |
TGATTCTATCAAACTTACTG+TGG | - | chr8_2:67538188-67538207 | Msa1264180:CDS | 30.0% | |
TTCACTTTCTTGTTCTCACT+TGG | + | chr8_2:67535163-67535182 | None:intergenic | 35.0% | |
GTGAGAACAAGAAAGTGAAA+CGG | - | chr8_2:67535164-67535183 | Msa1264180:three_prime_UTR | 35.0% | |
TGAGAACAAGAAAGTGAAAC+GGG | - | chr8_2:67535165-67535184 | Msa1264180:three_prime_UTR | 35.0% | |
GCTCTCTAAATTGAAGAAGA+AGG | + | chr8_2:67535299-67535318 | None:intergenic | 35.0% | |
GTTACAACAATTAGGGTTTG+TGG | + | chr8_2:67535335-67535354 | None:intergenic | 35.0% | |
TAGAAAGTGAAACCATCACT+AGG | + | chr8_2:67535587-67535606 | None:intergenic | 35.0% | |
AAGTCTTTGTGGCAAATTCT+TGG | - | chr8_2:67535623-67535642 | Msa1264180:three_prime_UTR | 35.0% | |
GCTCCAAATTCAAAGCTTAA+TGG | - | chr8_2:67535719-67535738 | Msa1264180:three_prime_UTR | 35.0% | |
!! | GTACTTTAAAGTTGTGCAAG+CGG | + | chr8_2:67535871-67535890 | None:intergenic | 35.0% |
!!! | CATCCGATATTGTTTTTTGG+CGG | - | chr8_2:67536007-67536026 | Msa1264180:three_prime_UTR | 35.0% |
GGTATAGTTGGAAACGAATT+TGG | - | chr8_2:67536064-67536083 | Msa1264180:three_prime_UTR | 35.0% | |
ATAGTTGGAAACGAATTTGG+AGG | - | chr8_2:67536067-67536086 | Msa1264180:three_prime_UTR | 35.0% | |
GTTTCCACAAAGCTAGAAAT+TGG | + | chr8_2:67536127-67536146 | None:intergenic | 35.0% | |
TGTCCAAACATCTACAAAAG+TGG | - | chr8_2:67536200-67536219 | Msa1264180:CDS | 35.0% | |
!! | TCACCACTTTTGTAGATGTT+TGG | + | chr8_2:67536206-67536225 | None:intergenic | 35.0% |
AATAACAATAAGGTTGCTGC+CGG | + | chr8_2:67536326-67536345 | None:intergenic | 35.0% | |
!! | TTGTTGTTTGAGCAAGTACT+CGG | - | chr8_2:67536452-67536471 | Msa1264180:intron | 35.0% |
CACATGAAATTGAATCCCAT+TGG | + | chr8_2:67536532-67536551 | None:intergenic | 35.0% | |
GAAGCAATTTGACAAACAGT+TGG | + | chr8_2:67536622-67536641 | None:intergenic | 35.0% | |
GGATTCATAAGGAATAAAGG+GGG | - | chr8_2:67536721-67536740 | Msa1264180:intron | 35.0% | |
GATTCATAAGGAATAAAGGG+GGG | - | chr8_2:67536722-67536741 | Msa1264180:intron | 35.0% | |
GGGAATTGGCATGATAAATT+TGG | + | chr8_2:67536916-67536935 | None:intergenic | 35.0% | |
TCATCAATCCCAAATTAAGG+CGG | + | chr8_2:67536946-67536965 | None:intergenic | 35.0% | |
GATGAAAATGCTTGAACATC+AGG | - | chr8_2:67536961-67536980 | Msa1264180:intron | 35.0% | |
!! | GTGATGTTCAATCACTTTTC+AGG | - | chr8_2:67537052-67537071 | Msa1264180:intron | 35.0% |
TCATGCAAGAGACATTGTTA+AGG | + | chr8_2:67537292-67537311 | None:intergenic | 35.0% | |
TAAGCTGAAGCTTATACTGA+TGG | + | chr8_2:67537496-67537515 | None:intergenic | 35.0% | |
AGTATAAGCTTCAGCTTAAC+TGG | - | chr8_2:67537498-67537517 | Msa1264180:intron | 35.0% | |
GTATAAGCTTCAGCTTAACT+GGG | - | chr8_2:67537499-67537518 | Msa1264180:intron | 35.0% | |
TCTCATTAATTCCATGCTTG+AGG | + | chr8_2:67537529-67537548 | None:intergenic | 35.0% | |
TAATGAGAAGTCTACTGTTC+TGG | - | chr8_2:67537541-67537560 | Msa1264180:intron | 35.0% | |
GAACTTCTTGATTACAAACG+AGG | - | chr8_2:67537581-67537600 | Msa1264180:intron | 35.0% | |
AAAGCCTAAGATGCTTTCAA+TGG | - | chr8_2:67537655-67537674 | Msa1264180:intron | 35.0% | |
AAGCCTAAGATGCTTTCAAT+GGG | - | chr8_2:67537656-67537675 | Msa1264180:intron | 35.0% | |
TCATCATCTAATGCAACTGA+AGG | + | chr8_2:67537749-67537768 | None:intergenic | 35.0% | |
TCAGTTGCATTAGATGATGA+AGG | - | chr8_2:67537749-67537768 | Msa1264180:intron | 35.0% | |
AGTACATTATTGCAGAACAC+AGG | - | chr8_2:67537786-67537805 | Msa1264180:intron | 35.0% | |
CATGGAATCTTCTATCTCAA+TGG | + | chr8_2:67537849-67537868 | None:intergenic | 35.0% | |
CACTTATAGATATGCTTGAC+CGG | - | chr8_2:67537906-67537925 | Msa1264180:intron | 35.0% | |
ACTTATAGATATGCTTGACC+GGG | - | chr8_2:67537907-67537926 | Msa1264180:intron | 35.0% | |
AGGGCTCTTAAAATATTCCA+TGG | + | chr8_2:67538100-67538119 | None:intergenic | 35.0% | |
AACATTTGCCTCATTCTTAG+CGG | + | chr8_2:67538150-67538169 | Msa1264190:CDS | 35.0% | |
!! | TGGATCGATTTGCTATGCTT+GGG | + | chr8_2:67535204-67535223 | None:intergenic | 40.0% |
AAGAAGAAGGAGAGTAATCG+CGG | + | chr8_2:67535286-67535305 | None:intergenic | 40.0% | |
TTGTTCTTTGCCCTTTGGTT+TGG | - | chr8_2:67535467-67535486 | Msa1264180:three_prime_UTR | 40.0% | |
AAGGTTACGACCAAACCAAA+GGG | + | chr8_2:67535480-67535499 | None:intergenic | 40.0% | |
TAAGGTTACGACCAAACCAA+AGG | + | chr8_2:67535481-67535500 | None:intergenic | 40.0% | |
TCTTTGTGGCAAATTCTTGG+AGG | - | chr8_2:67535626-67535645 | Msa1264180:three_prime_UTR | 40.0% | |
CAAAGCTTAATGGAGTGGAA+TGG | - | chr8_2:67535729-67535748 | Msa1264180:three_prime_UTR | 40.0% | |
TGGCCGCCAAAAAACAATAT+CGG | + | chr8_2:67536013-67536032 | None:intergenic | 40.0% | |
GAGCCAGACAAAAAAGTTTG+GGG | + | chr8_2:67536036-67536055 | None:intergenic | 40.0% | |
GGAGCCAGACAAAAAAGTTT+GGG | + | chr8_2:67536037-67536056 | None:intergenic | 40.0% | |
!! | AGCTCCAATTTCTAGCTTTG+TGG | - | chr8_2:67536120-67536139 | Msa1264180:three_prime_UTR | 40.0% |
GATGTTTGGACAACTGCAAA+CGG | + | chr8_2:67536192-67536211 | None:intergenic | 40.0% | |
ACTCTGTAAACTCACGTTTG+AGG | - | chr8_2:67536237-67536256 | Msa1264180:intron | 40.0% | |
!!! | AGAACACGTTTTAGAGAGAC+AGG | + | chr8_2:67536386-67536405 | None:intergenic | 40.0% |
GTACTTGCTCAAACAACAAC+CGG | + | chr8_2:67536451-67536470 | None:intergenic | 40.0% | |
TTTGAGCAAGTACTCGGTTA+TGG | - | chr8_2:67536458-67536477 | Msa1264180:intron | 40.0% | |
TTTGCTTGACAGACATGAAC+TGG | + | chr8_2:67536500-67536519 | None:intergenic | 40.0% | |
GCAATTTGACAAACAGTTGG+AGG | + | chr8_2:67536619-67536638 | None:intergenic | 40.0% | |
! | ATTGGCAGTTGGAGATTTTC+TGG | - | chr8_2:67536799-67536818 | Msa1264180:intron | 40.0% |
! | TTGGCAGTTGGAGATTTTCT+GGG | - | chr8_2:67536800-67536819 | Msa1264180:intron | 40.0% |
!! | CAAATTAAGGCGGGTATTGA+GGG | + | chr8_2:67536936-67536955 | None:intergenic | 40.0% |
CTCAATACCCGCCTTAATTT+GGG | - | chr8_2:67536935-67536954 | Msa1264180:intron | 40.0% | |
CATCAATCCCAAATTAAGGC+GGG | + | chr8_2:67536945-67536964 | None:intergenic | 40.0% | |
! | ATTTTACAGTGAGCATGTGC+TGG | - | chr8_2:67537120-67537139 | Msa1264180:intron | 40.0% |
! | AGTGTTGCTGATGACGAAAT+TGG | + | chr8_2:67537165-67537184 | None:intergenic | 40.0% |
GAATTTACGGATATTGGCAG+TGG | - | chr8_2:67537212-67537231 | Msa1264180:intron | 40.0% | |
TGCAAGAGACATTGTTAAGG+AGG | + | chr8_2:67537289-67537308 | None:intergenic | 40.0% | |
GTGAATGTCTCTCTTCATGA+TGG | - | chr8_2:67537338-67537357 | Msa1264180:intron | 40.0% | |
AATGTCTCTCTTCATGATGG+AGG | - | chr8_2:67537341-67537360 | Msa1264180:intron | 40.0% | |
! | ATGTCTCTCTTCATGATGGA+GGG | - | chr8_2:67537342-67537361 | Msa1264180:intron | 40.0% |
TCTTGATTACAAACGAGGGA+AGG | - | chr8_2:67537586-67537605 | Msa1264180:intron | 40.0% | |
!! | TAAGCTTGCACTTGAGTTGA+TGG | - | chr8_2:67537610-67537629 | Msa1264180:intron | 40.0% |
!! | AAGCTTGCACTTGAGTTGAT+GGG | - | chr8_2:67537611-67537630 | Msa1264180:intron | 40.0% |
TATTGCAGAACACAGGAAAC+AGG | - | chr8_2:67537793-67537812 | Msa1264180:intron | 40.0% | |
ATTGCAGAACACAGGAAACA+GGG | - | chr8_2:67537794-67537813 | Msa1264180:intron | 40.0% | |
TAGAAGATTCCATGCTCTTG+AGG | - | chr8_2:67537855-67537874 | Msa1264180:intron | 40.0% | |
TCTATAAGTGTCATCCTCCT+TGG | + | chr8_2:67537896-67537915 | None:intergenic | 40.0% | |
! | CATGGAAGATACAAGAGCAT+AGG | + | chr8_2:67538082-67538101 | None:intergenic | 40.0% |
CTATGCTCTTGTATCTTCCA+TGG | - | chr8_2:67538080-67538099 | Msa1264180:CDS | 40.0% | |
GTAGTATACCGCTAAGAATG+AGG | - | chr8_2:67538139-67538158 | Msa1264180:CDS | 40.0% | |
GCTATGCTTGGGAGAAGAAA+AGG | + | chr8_2:67535193-67535212 | None:intergenic | 45.0% | |
!! | GTGGATCGATTTGCTATGCT+TGG | + | chr8_2:67535205-67535224 | None:intergenic | 45.0% |
ACCTGTTGTTCTTTGCCCTT+TGG | - | chr8_2:67535462-67535481 | Msa1264180:three_prime_UTR | 45.0% | |
ACCAAAGGGCAAAGAACAAC+AGG | + | chr8_2:67535466-67535485 | None:intergenic | 45.0% | |
CCAGACAAAAAAGTTTGGGG+TGG | + | chr8_2:67536033-67536052 | None:intergenic | 45.0% | |
!!! | CCACCCCAAACTTTTTTGTC+TGG | - | chr8_2:67536030-67536049 | Msa1264180:three_prime_UTR | 45.0% |
CGGAGCCAGACAAAAAAGTT+TGG | + | chr8_2:67536038-67536057 | None:intergenic | 45.0% | |
TTTCCAACTATACCCAGTGG+CGG | + | chr8_2:67536058-67536077 | None:intergenic | 45.0% | |
TCGTTTCCAACTATACCCAG+TGG | + | chr8_2:67536061-67536080 | None:intergenic | 45.0% | |
GCTTTGTGGAAACGTGAGTT+TGG | - | chr8_2:67536134-67536153 | Msa1264180:three_prime_UTR | 45.0% | |
GCTCAAACAACAACCGGAAT+AGG | + | chr8_2:67536445-67536464 | None:intergenic | 45.0% | |
ACAGTTGGAGGACAACAACT+AGG | + | chr8_2:67536607-67536626 | None:intergenic | 45.0% | |
! | TGGCAGTTGGAGATTTTCTG+GGG | - | chr8_2:67536801-67536820 | Msa1264180:intron | 45.0% |
! | AGGTGAGTGCTCTTTTGTTC+CGG | - | chr8_2:67536877-67536896 | Msa1264180:intron | 45.0% |
! | ATTTGGGATTATGGTCACCC+CGG | + | chr8_2:67536899-67536918 | None:intergenic | 45.0% |
! | CCAAATTAAGGCGGGTATTG+AGG | + | chr8_2:67536937-67536956 | None:intergenic | 45.0% |
CCTCAATACCCGCCTTAATT+TGG | - | chr8_2:67536934-67536953 | Msa1264180:intron | 45.0% | |
ATTGTTAAGGAGGAGACGAG+GGG | + | chr8_2:67537279-67537298 | None:intergenic | 45.0% | |
CATTGTTAAGGAGGAGACGA+GGG | + | chr8_2:67537280-67537299 | None:intergenic | 45.0% | |
ACATTGTTAAGGAGGAGACG+AGG | + | chr8_2:67537281-67537300 | None:intergenic | 45.0% | |
CACATTAGACAGAACTTGCG+AGG | + | chr8_2:67537321-67537340 | None:intergenic | 45.0% | |
! | TGTCTCTCTTCATGATGGAG+GGG | - | chr8_2:67537343-67537362 | Msa1264180:intron | 45.0% |
CTTGTGCTAACAGGTGCAAA+TGG | - | chr8_2:67537368-67537387 | Msa1264180:intron | 45.0% | |
AGCTAACATGCGCATGAAAG+TGG | + | chr8_2:67537405-67537424 | None:intergenic | 45.0% | |
ACTTTCATGCGCATGTTAGC+TGG | - | chr8_2:67537404-67537423 | Msa1264180:intron | 45.0% | |
CTTTCATGCGCATGTTAGCT+GGG | - | chr8_2:67537405-67537424 | Msa1264180:intron | 45.0% | |
CAAAGGATTTCTCCTGCAGA+CGG | + | chr8_2:67537440-67537459 | None:intergenic | 45.0% | |
! | GCAGGAGAAATCCTTTGGAA+TGG | - | chr8_2:67537443-67537462 | Msa1264180:intron | 45.0% |
GAATGTCATGGCCATTCCAA+AGG | + | chr8_2:67537457-67537476 | None:intergenic | 45.0% | |
!! | TGGCCCATTGAAAGCATCTT+AGG | + | chr8_2:67537662-67537681 | None:intergenic | 45.0% |
! | CAAGTTGCAATCTTTTCCGC+TGG | + | chr8_2:67537682-67537701 | None:intergenic | 45.0% |
ACAGGGAGGAATTGTGATTG+TGG | - | chr8_2:67537811-67537830 | Msa1264180:intron | 45.0% | |
!!! | TTTTTAAAATGAATATTAAT+TGG | + | chr8_2:67536416-67536435 | None:intergenic | 5.0% |
!!! | TAATATTCATTTTAAAAATT+TGG | - | chr8_2:67536418-67536437 | Msa1264180:intron | 5.0% |
!!! | TTAAAATTTTATTTGTTTAT+TGG | - | chr8_2:67536781-67536800 | Msa1264180:intron | 5.0% |
TGGATGGAGAAAGAGGAGAG+TGG | + | chr8_2:67535257-67535276 | None:intergenic | 50.0% | |
AAGAAGGAGAGTAATCGCGG+CGG | + | chr8_2:67535283-67535302 | None:intergenic | 50.0% | |
! | GGTTTTACGCTGGCGAGAAA+GGG | + | chr8_2:67536305-67536324 | None:intergenic | 50.0% |
CTTTCTCGCCAGCGTAAAAC+CGG | - | chr8_2:67536304-67536323 | Msa1264180:intron | 50.0% | |
! | GGCAGTTGGAGATTTTCTGG+GGG | - | chr8_2:67536802-67536821 | Msa1264180:intron | 50.0% |
!! | TGGAGATTTTCTGGGGGATG+AGG | - | chr8_2:67536808-67536827 | Msa1264180:intron | 50.0% |
! | GGTGAGTGCTCTTTTGTTCC+GGG | - | chr8_2:67536878-67536897 | Msa1264180:intron | 50.0% |
! | GTGAGTGCTCTTTTGTTCCG+GGG | - | chr8_2:67536879-67536898 | Msa1264180:intron | 50.0% |
!! | AAGGCGGGTATTGAGGGAAT+TGG | + | chr8_2:67536930-67536949 | None:intergenic | 50.0% |
TTGTTAAGGAGGAGACGAGG+GGG | + | chr8_2:67537278-67537297 | None:intergenic | 50.0% | |
GCTAACAGGTGCAAATGGCT+CGG | - | chr8_2:67537373-67537392 | Msa1264180:intron | 50.0% | |
CTAACAGGTGCAAATGGCTC+GGG | - | chr8_2:67537374-67537393 | Msa1264180:intron | 50.0% | |
CGTCTGCAGGAGAAATCCTT+TGG | - | chr8_2:67537438-67537457 | Msa1264180:intron | 50.0% | |
!! | TGCACTTGAGTTGATGGGAC+TGG | - | chr8_2:67537616-67537635 | Msa1264180:intron | 50.0% |
!! | GCACTTGAGTTGATGGGACT+GGG | - | chr8_2:67537617-67537636 | Msa1264180:intron | 50.0% |
! | GTTGATGGGACTGGGAAGAT+TGG | - | chr8_2:67537625-67537644 | Msa1264180:intron | 50.0% |
AGATGCTTTCAATGGGCCAG+CGG | - | chr8_2:67537663-67537682 | Msa1264180:intron | 50.0% | |
GCGATCAATTGCGAGCAATC+TGG | + | chr8_2:67537705-67537724 | None:intergenic | 50.0% | |
TCGCAATTGATCGCCCCATA+TGG | - | chr8_2:67537711-67537730 | Msa1264180:intron | 50.0% | |
GCTCGTCTAGCAACCATATG+GGG | + | chr8_2:67537727-67537746 | None:intergenic | 50.0% | |
GGCTCGTCTAGCAACCATAT+GGG | + | chr8_2:67537728-67537747 | None:intergenic | 50.0% | |
AGGCTCGTCTAGCAACCATA+TGG | + | chr8_2:67537729-67537748 | None:intergenic | 50.0% | |
ATCCTCCTTGGAAACCTTGG+TGG | + | chr8_2:67537884-67537903 | None:intergenic | 50.0% | |
GTCATCCTCCTTGGAAACCT+TGG | + | chr8_2:67537887-67537906 | None:intergenic | 50.0% | |
GAAAGAGGAGAGTGGTCTCG+CGG | + | chr8_2:67535249-67535268 | None:intergenic | 55.0% | |
!! | GCGGTGATGGATGGAGAAAG+AGG | + | chr8_2:67535264-67535283 | None:intergenic | 55.0% |
!! | TTTTTGTCTGGCTCCGCCAC+TGG | - | chr8_2:67536042-67536061 | Msa1264180:three_prime_UTR | 55.0% |
!! | TTTTGTCTGGCTCCGCCACT+GGG | - | chr8_2:67536043-67536062 | Msa1264180:three_prime_UTR | 55.0% |
AAGGGATGGGCAGCGATGAT+GGG | + | chr8_2:67536287-67536306 | None:intergenic | 55.0% | |
AAAGGGATGGGCAGCGATGA+TGG | + | chr8_2:67536288-67536307 | None:intergenic | 55.0% | |
TACGCTGGCGAGAAAGGGAT+GGG | + | chr8_2:67536300-67536319 | None:intergenic | 55.0% | |
TTACGCTGGCGAGAAAGGGA+TGG | + | chr8_2:67536301-67536320 | None:intergenic | 55.0% | |
! | CGGTTTTACGCTGGCGAGAA+AGG | + | chr8_2:67536306-67536325 | None:intergenic | 55.0% |
AACTGGGTCTGCCTCAAGCA+TGG | - | chr8_2:67537515-67537534 | Msa1264180:intron | 55.0% | |
! | GGGACTGGGAAGATTGGCTA+AGG | - | chr8_2:67537631-67537650 | Msa1264180:intron | 55.0% |
GCAGAACACAGGAAACAGGG+AGG | - | chr8_2:67537797-67537816 | Msa1264180:intron | 55.0% | |
TGCCACCAAGGTTTCCAAGG+AGG | - | chr8_2:67537879-67537898 | Msa1264180:intron | 55.0% | |
ATCCACCACTACACCACCGC+CGG | - | chr8_2:67535219-67535238 | Msa1264180:three_prime_UTR | 60.0% | |
!! | GTAATCGCGGCGGTGATGGA+TGG | + | chr8_2:67535273-67535292 | None:intergenic | 60.0% |
GAGAGTAATCGCGGCGGTGA+TGG | + | chr8_2:67535277-67535296 | None:intergenic | 60.0% | |
GCTCCGCCACTGGGTATAGT+TGG | - | chr8_2:67536052-67536071 | Msa1264180:three_prime_UTR | 60.0% | |
!! | GCAGCGATGATGGGGCTGTT+TGG | + | chr8_2:67536278-67536297 | None:intergenic | 60.0% |
AGGGATGGGCAGCGATGATG+GGG | + | chr8_2:67536286-67536305 | None:intergenic | 60.0% | |
!!! | GGTTGCTGCCGGTTTTACGC+TGG | + | chr8_2:67536315-67536334 | None:intergenic | 60.0% |
GGGGGATGAGGACTCATGTC+TGG | - | chr8_2:67536820-67536839 | Msa1264180:intron | 60.0% | |
TTAAGGAGGAGACGAGGGGG+TGG | + | chr8_2:67537275-67537294 | None:intergenic | 60.0% | |
!! | GGAGGGGCACTTGTGCTAAC+AGG | - | chr8_2:67537359-67537378 | Msa1264180:intron | 60.0% |
! | GGGTTTTCTCGTCCGTCTGC+AGG | - | chr8_2:67537425-67537444 | Msa1264180:intron | 60.0% |
TGGTGGCAGCCTCAAGAGCA+TGG | + | chr8_2:67537867-67537886 | None:intergenic | 60.0% | |
TGCTCTTGAGGCTGCCACCA+AGG | - | chr8_2:67537867-67537886 | Msa1264180:intron | 60.0% | |
GGCTGCCACCAAGGTTTCCA+AGG | - | chr8_2:67537876-67537895 | Msa1264180:intron | 60.0% | |
AGAGTGGTCTCGCGGCTCAC+CGG | + | chr8_2:67535241-67535260 | None:intergenic | 65.0% | |
CACCGGCGGTGGTGTAGTGG+TGG | + | chr8_2:67535224-67535243 | None:intergenic | 70.0% | |
GCTCACCGGCGGTGGTGTAG+TGG | + | chr8_2:67535227-67535246 | None:intergenic | 70.0% | |
AGGAGGAGACGAGGGGGTGG+AGG | + | chr8_2:67537272-67537291 | None:intergenic | 70.0% | |
GTGGTCTCGCGGCTCACCGG+CGG | + | chr8_2:67535238-67535257 | None:intergenic | 75.0% | |
! | GTCTCGCGGCTCACCGGCGG+TGG | + | chr8_2:67535235-67535254 | None:intergenic | 80.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8_2 | gene | 67535160 | 67538221 | 67535160 | ID=Msa1264180;Name=Msa1264180 |
chr8_2 | mRNA | 67535160 | 67538221 | 67535160 | ID=Msa1264180-mRNA-1;Parent=Msa1264180;Name=Msa1264180-mRNA-1;_AED=0.26;_eAED=0.26;_QI=0|0|0.5|1|0|0|2|1035|84 |
chr8_2 | exon | 67535160 | 67536252 | 67535160 | ID=Msa1264180-mRNA-1:exon:22268;Parent=Msa1264180-mRNA-1 |
chr8_2 | exon | 67538025 | 67538221 | 67538025 | ID=Msa1264180-mRNA-1:exon:22267;Parent=Msa1264180-mRNA-1 |
chr8_2 | CDS | 67538025 | 67538221 | 67538025 | ID=Msa1264180-mRNA-1:cds;Parent=Msa1264180-mRNA-1 |
chr8_2 | CDS | 67536195 | 67536252 | 67536195 | ID=Msa1264180-mRNA-1:cds;Parent=Msa1264180-mRNA-1 |
chr8_2 | three_prime_UTR | 67535160 | 67536194 | 67535160 | ID=Msa1264180-mRNA-1:three_prime_utr;Parent=Msa1264180-mRNA-1 |
Gene Sequence |
Protein sequence |