AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1222840

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1222840 MtrunA17_Chr4g0074281 99.127 229 2 0 1 229 1 229 1.42e-168 463
Msa1222840 MtrunA17_Chr4g0069411 29.592 196 111 4 20 197 1062 1248 4.69e-17 79.7
Msa1222840 MtrunA17_Chr4g0069411 26.455 189 115 2 25 197 413 593 2.27e-12 65.9
Msa1222840 MtrunA17_Chr4g0039821 30.233 172 95 2 24 178 1050 1213 1.54e-15 75.5
Msa1222840 MtrunA17_Chr4g0039821 27.326 172 97 3 25 178 393 554 8.04e-11 61.6
Msa1222840 MtrunA17_Chr1g0194001 28.488 172 98 2 24 178 163 326 1.98e-14 71.6
Msa1222840 MtrunA17_Chr4g0069361 27.907 172 99 2 24 178 1052 1215 4.70e-14 70.9
Msa1222840 MtrunA17_Chr4g0069361 29.412 170 96 3 25 178 395 556 2.33e-13 68.9
Msa1222840 MtrunA17_Chr1g0193991 28.488 172 98 2 24 178 1060 1223 5.90e-14 70.9
Msa1222840 MtrunA17_Chr1g0193991 27.647 170 99 3 25 178 406 567 5.43e-11 62.0
Msa1222840 MtrunA17_Chr6g0474071 29.319 191 108 6 24 196 229 410 1.16e-13 69.3
Msa1222840 MtrunA17_Chr4g0069351 29.412 170 96 3 25 178 395 556 2.22e-13 68.9
Msa1222840 MtrunA17_Chr4g0069351 26.744 172 101 2 24 178 1052 1215 5.19e-13 67.8
Msa1222840 MtrunA17_Chr1g0180601 28.655 171 98 2 24 178 415 577 2.28e-13 68.9
Msa1222840 MtrunA17_Chr2g0285191 27.895 190 113 3 24 197 414 595 6.27e-13 67.8
Msa1222840 MtrunA17_Chr3g0138211 28.824 170 97 3 25 178 413 574 1.04e-12 67.0
Msa1222840 MtrunA17_Chr4g0069401 27.907 172 99 3 24 178 1050 1213 1.60e-12 66.6
Msa1222840 MtrunA17_Chr4g0069401 28.235 170 98 3 25 178 390 551 1.76e-12 66.2
Msa1222840 MtrunA17_Chr2g0285311 28.070 171 99 3 24 178 385 547 2.78e-12 65.9
Msa1222840 MtrunA17_Chr6g0481921 28.409 176 98 4 24 183 287 450 4.40e-12 65.1
Msa1222840 MtrunA17_Chr7g0264631 27.647 170 99 3 25 178 443 604 4.44e-12 65.1
Msa1222840 MtrunA17_Chr4g0041871 29.082 196 111 3 20 197 355 540 1.11e-11 63.9
Msa1222840 MtrunA17_Chr3g0119381 28.488 172 98 2 24 178 1073 1236 1.85e-11 63.2
Msa1222840 MtrunA17_Chr3g0119381 27.647 170 99 3 25 178 416 577 9.98e-11 61.2
Msa1222840 MtrunA17_Chr2g0285301 25.773 194 120 3 20 197 376 561 2.17e-11 63.2
Msa1222840 MtrunA17_Chr2g0285301 25.131 191 118 2 24 197 1037 1219 7.04e-11 61.6
Msa1222840 MtrunA17_Chr6g0472531 31.915 188 99 8 21 196 583 753 3.23e-11 62.8
Msa1222840 MtrunA17_Chr6g0486841 26.804 194 115 4 20 196 371 554 8.63e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1222840 AT1G63270.1 83.406 229 38 0 1 229 1 229 5.39e-140 391
Msa1222840 AT1G67940.1 29.534 193 123 4 9 193 27 214 8.25e-15 72.0
Msa1222840 AT3G62150.3 28.431 204 119 4 13 197 405 600 2.86e-14 72.0
Msa1222840 AT3G62150.3 27.273 176 103 2 20 178 1064 1231 1.70e-13 69.7
Msa1222840 AT3G62150.2 28.431 204 119 4 13 197 405 600 2.86e-14 72.0
Msa1222840 AT3G62150.2 27.273 176 103 2 20 178 1064 1231 1.70e-13 69.7
Msa1222840 AT3G62150.1 28.431 204 119 4 13 197 405 600 2.86e-14 72.0
Msa1222840 AT3G62150.1 27.273 176 103 2 20 178 1064 1231 1.70e-13 69.7
Msa1222840 AT1G02530.1 28.652 178 100 3 20 178 1039 1208 1.04e-13 70.5
Msa1222840 AT1G02530.1 26.804 194 118 3 20 197 380 565 1.50e-13 70.1
Msa1222840 AT1G02530.2 26.804 194 118 3 20 197 380 565 1.44e-13 70.1
Msa1222840 AT4G18050.1 27.895 190 113 3 24 197 371 552 1.82e-13 69.7
Msa1222840 AT4G18050.1 25.989 177 106 2 19 178 1004 1172 4.72e-11 62.4
Msa1222840 AT4G18050.2 27.895 190 113 3 24 197 381 562 2.08e-13 69.3
Msa1222840 AT4G18050.2 25.989 177 106 2 19 178 1014 1182 5.28e-11 62.4
Msa1222840 AT5G46540.1 28.070 171 99 3 24 178 373 535 4.99e-13 68.6
Msa1222840 AT5G46540.1 26.923 208 126 3 19 209 1016 1214 5.33e-13 68.2
Msa1222840 AT2G47000.4 28.655 171 98 3 24 178 400 562 7.36e-13 67.8
Msa1222840 AT2G47000.6 28.655 171 98 3 24 178 400 562 7.37e-13 67.8
Msa1222840 AT2G47000.6 26.744 172 101 2 24 178 1058 1221 3.16e-12 65.9
Msa1222840 AT2G47000.5 28.655 171 98 3 24 178 400 562 7.37e-13 67.8
Msa1222840 AT2G47000.5 26.744 172 101 2 24 178 1058 1221 3.16e-12 65.9
Msa1222840 AT2G47000.1 28.655 171 98 3 24 178 400 562 7.37e-13 67.8
Msa1222840 AT2G47000.1 26.744 172 101 2 24 178 1058 1221 3.16e-12 65.9
Msa1222840 AT2G47000.3 28.655 171 98 3 24 178 400 562 8.25e-13 67.8
Msa1222840 AT2G47000.7 28.655 171 98 3 24 178 400 562 8.25e-13 67.8
Msa1222840 AT2G47000.2 28.655 171 98 3 24 178 400 562 8.63e-13 67.8
Msa1222840 AT1G28010.1 25.926 189 116 3 25 197 389 569 1.49e-12 67.0
Msa1222840 AT4G01830.2 28.571 175 101 3 20 178 131 297 1.50e-12 67.0
Msa1222840 AT4G01830.2 28.324 173 98 3 24 178 767 931 4.97e-11 62.4
Msa1222840 AT4G01830.1 28.571 175 101 3 20 178 365 531 1.74e-12 66.6
Msa1222840 AT4G01830.1 28.324 173 98 3 24 178 1001 1165 6.24e-11 62.0
Msa1222840 AT1G02520.1 28.070 171 99 3 24 178 397 559 2.25e-12 66.6
Msa1222840 AT1G02520.1 27.011 174 100 2 24 178 1048 1213 8.38e-12 64.7
Msa1222840 AT1G02520.2 28.070 171 99 3 24 178 397 559 2.25e-12 66.6
Msa1222840 AT1G02520.2 27.011 174 100 2 24 178 1048 1213 8.38e-12 64.7
Msa1222840 AT1G02520.3 28.070 171 99 3 24 178 397 559 2.25e-12 66.6
Msa1222840 AT1G02520.3 27.011 174 100 2 24 178 1048 1213 8.38e-12 64.7
Msa1222840 AT1G27940.2 28.804 184 117 5 25 197 174 354 4.29e-12 65.5
Msa1222840 AT1G27940.2 28.042 189 112 3 25 197 807 987 7.54e-11 62.0
Msa1222840 AT1G27940.1 28.649 185 118 5 25 198 388 569 5.79e-12 65.1
Msa1222840 AT1G27940.1 27.895 190 113 3 25 198 1021 1202 9.52e-11 61.6
Msa1222840 AT4G01820.2 27.684 177 100 3 20 178 360 526 1.23e-11 64.3
Msa1222840 AT4G01820.1 27.684 177 100 3 20 178 360 526 1.37e-11 64.3
Msa1222840 AT2G36910.1 27.485 171 100 2 24 178 384 546 1.62e-11 63.9
Msa1222840 AT3G28380.1 28.000 175 102 3 20 178 371 537 3.50e-11 62.8
Msa1222840 AT3G28860.1 27.513 189 110 4 25 196 1027 1205 4.77e-11 62.4

Find 109 sgRNAs with CRISPR-Local

Find 247 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAATCTGAATTTACGGATAT+TGG 0.214611 8_1:-87239343 Msa1222840:five_prime_UTR
TGATAGAATCATTGCAAATT+TGG 0.230560 8_1:+87238373 None:intergenic
AGTATAAGCTTCAGCTTAAC+TGG 0.248424 8_1:-87239051 Msa1222840:CDS
CCTTACAAGTTACAACAATT+AGG 0.258445 8_1:+87241210 None:intergenic
AAATGCTTGTTGCAGTAAAT+TGG 0.289252 8_1:+87238336 None:intergenic
ACTTTCATGCGCATGTTAGC+TGG 0.296912 8_1:-87239145 Msa1222840:CDS
CTTACAAGTTACAACAATTA+GGG 0.315535 8_1:+87241211 None:intergenic
TGGCCCATTGAAAGCATCTT+AGG 0.319230 8_1:+87238890 None:intergenic
AAAGCATTAATCTGAATTTA+CGG 0.323920 8_1:-87239350 Msa1222840:five_prime_UTR
TAATGAGAAGTCTACTGTTC+TGG 0.350793 8_1:-87239008 Msa1222840:CDS
TATTGCAGAACACAGGAAAC+AGG 0.372464 8_1:-87238756 Msa1222840:CDS
CCTAATTGTTGTAACTTGTA+AGG 0.390094 8_1:-87241210 Msa1222840:intron
TAAGCTTGCACTTGAGTTGA+TGG 0.405805 8_1:-87238939 Msa1222840:CDS
AGTGTTGCTGATGACGAAAT+TGG 0.408655 8_1:+87239387 None:intergenic
GAAGGGAAATGAAACTGAAA+TGG 0.418893 8_1:+87241437 None:intergenic
CGTCTGCAGGAGAAATCCTT+TGG 0.429605 8_1:-87239111 Msa1222840:CDS
TTCACTTTCTTGTTCTCACT+TGG 0.432528 8_1:+87241392 None:intergenic
GCTATGCTTGGGAGAAGAAA+AGG 0.440622 8_1:+87241362 None:intergenic
GTGGATCGATTTGCTATGCT+TGG 0.441553 8_1:+87241350 None:intergenic
GTTACAACAATTAGGGTTTG+TGG 0.445339 8_1:+87241218 None:intergenic
CTTGTGCTAACAGGTGCAAA+TGG 0.445397 8_1:-87239181 Msa1222840:CDS
TGCACTTGAGTTGATGGGAC+TGG 0.458658 8_1:-87238933 Msa1222840:CDS
GGAAATATTATTATTACTGA+AGG 0.459203 8_1:+87241458 None:intergenic
GGCTCGTCTAGCAACCATAT+GGG 0.461520 8_1:+87238824 None:intergenic
AACATTTGCCTCATTCTTAG+CGG 0.462342 8_1:+87238402 None:intergenic
GAGAGTAACCGCGGCGGTGA+TGG 0.462430 8_1:+87241278 None:intergenic
CATGGAATCTTCTATCTCAA+TGG 0.462552 8_1:+87238703 None:intergenic
GCACTTGAGTTGATGGGACT+GGG 0.464272 8_1:-87238932 Msa1222840:CDS
TGAGAACAAGAAAGTGAAAC+GGG 0.466782 8_1:-87241387 Msa1222840:five_prime_UTR
GGAGGGGCACTTGTGCTAAC+AGG 0.470048 8_1:-87239190 Msa1222840:CDS
GTCTCGCGGCTCACCGGCGG+TGG 0.470064 8_1:+87241320 None:intergenic
GCGATCAATTGCGAGCAATC+TGG 0.470226 8_1:+87238847 None:intergenic
ATCCTCCTTGGAAACCTTGG+TGG 0.473105 8_1:+87238668 None:intergenic
TCTATAAGTGTCATCCTCCT+TGG 0.473498 8_1:+87238656 None:intergenic
TCGCAATTGATCGCCCCATA+TGG 0.474072 8_1:-87238838 Msa1222840:CDS
AGCTAACATGCGCATGAAAG+TGG 0.475025 8_1:+87239147 None:intergenic
AGGCTCGTCTAGCAACCATA+TGG 0.475048 8_1:+87238823 None:intergenic
CTTTCATGCGCATGTTAGCT+GGG 0.479202 8_1:-87239144 Msa1222840:CDS
CACTTATAGATATGCTTGAC+CGG 0.480974 8_1:-87238643 Msa1222840:CDS
ATGGAATCTTCTATCTCAAT+GGG 0.487729 8_1:+87238704 None:intergenic
GTTGATGGGACTGGGAAGAT+TGG 0.488958 8_1:-87238924 Msa1222840:CDS
AAAGCCTAAGATGCTTTCAA+TGG 0.493892 8_1:-87238894 Msa1222840:CDS
AGAGTGGTCTCGCGGCTCAC+CGG 0.494837 8_1:+87241314 None:intergenic
TCATGCAAGAGACATTGTTA+AGG 0.501277 8_1:+87239260 None:intergenic
GCTCTCTAAATTGAAGAAGA+AGG 0.503109 8_1:+87241256 None:intergenic
GTCATCCTCCTTGGAAACCT+TGG 0.511121 8_1:+87238665 None:intergenic
GAATTTACGGATATTGGCAG+TGG 0.521100 8_1:-87239337 Msa1222840:five_prime_UTR
CACCGGCGGTGGTGTAGTGG+TGG 0.525785 8_1:+87241331 None:intergenic
TGCTCTTGAGGCTGCCACCA+AGG 0.526833 8_1:-87238682 Msa1222840:CDS
AGGGCTCTTAAAATATTCCA+TGG 0.529631 8_1:+87238452 None:intergenic
GTGAGAACAAGAAAGTGAAA+CGG 0.534171 8_1:-87241388 Msa1222840:five_prime_UTR
GGCTGCCACCAAGGTTTCCA+AGG 0.535052 8_1:-87238673 Msa1222840:CDS
CTATGCTCTTGTATCTTCCA+TGG 0.538427 8_1:-87238469 Msa1222840:three_prime_UTR
GAATGTCATGGCCATTCCAA+AGG 0.538492 8_1:+87239095 None:intergenic
AATGTCTCTCTTCATGATGG+AGG 0.538799 8_1:-87239208 Msa1222840:CDS
AAGCCTAAGATGCTTTCAAT+GGG 0.539281 8_1:-87238893 Msa1222840:CDS
GTAACCGCGGCGGTGATGGA+TGG 0.540850 8_1:+87241282 None:intergenic
TCAGTTGCATTAGATGATGA+AGG 0.540951 8_1:-87238800 Msa1222840:CDS
GCTAACAGGTGCAAATGGCT+CGG 0.541340 8_1:-87239176 Msa1222840:CDS
CTAACAGGTGCAAATGGCTC+GGG 0.543916 8_1:-87239175 Msa1222840:CDS
ACATTGTTAAGGAGGAGACG+AGG 0.550534 8_1:+87239271 None:intergenic
AATACAAAAGTCAACTACAT+AGG 0.554009 8_1:+87238533 None:intergenic
TAAGCTGAAGCTTATACTGA+TGG 0.554659 8_1:+87239056 None:intergenic
AAGCTTGCACTTGAGTTGAT+GGG 0.556728 8_1:-87238938 Msa1222840:CDS
TGGATCGATTTGCTATGCTT+GGG 0.557084 8_1:+87241351 None:intergenic
ATGTCTCTCTTCATGATGGA+GGG 0.559238 8_1:-87239207 Msa1222840:CDS
AACTGGGTCTGCCTCAAGCA+TGG 0.564032 8_1:-87239034 Msa1222840:CDS
ACAGGGAGGAATTGTGATTG+TGG 0.566283 8_1:-87238738 Msa1222840:CDS
GCTCACCGGCGGTGGTGTAG+TGG 0.568544 8_1:+87241328 None:intergenic
TGGTGGCAGCCTCAAGAGCA+TGG 0.568725 8_1:+87238685 None:intergenic
TCTCATTAATTCCATGCTTG+AGG 0.569583 8_1:+87239023 None:intergenic
GCGGTGATGGATGGAGAAAG+AGG 0.570030 8_1:+87241291 None:intergenic
TGTCTCTCTTCATGATGGAG+GGG 0.571601 8_1:-87239206 Msa1222840:CDS
TCTTGATTACAAACGAGGGA+AGG 0.572184 8_1:-87238963 Msa1222840:CDS
GAAATATTATTATTACTGAA+GGG 0.574202 8_1:+87241459 None:intergenic
GTGAATGTCTCTCTTCATGA+TGG 0.575226 8_1:-87239211 Msa1222840:CDS
GTGGTCTCGCGGCTCACCGG+CGG 0.583254 8_1:+87241317 None:intergenic
TAGAAGATTCCATGCTCTTG+AGG 0.587588 8_1:-87238694 Msa1222840:CDS
AAAGTTAACTAATATCTGCC+CGG 0.588067 8_1:+87238624 None:intergenic
CACATTAGACAGAACTTGCG+AGG 0.590033 8_1:+87239231 None:intergenic
GTAGTATACCGCTAAGAATG+AGG 0.591629 8_1:-87238410 Msa1222840:three_prime_UTR
GCAGGAGAAATCCTTTGGAA+TGG 0.592243 8_1:-87239106 Msa1222840:CDS
CATGGAAGATACAAGAGCAT+AGG 0.592495 8_1:+87238470 None:intergenic
AGATGAAAGAGAAACGTGAA+GGG 0.592664 8_1:+87241420 None:intergenic
TGCAAGAGACATTGTTAAGG+AGG 0.593226 8_1:+87239263 None:intergenic
GGGACTGGGAAGATTGGCTA+AGG 0.595370 8_1:-87238918 Msa1222840:CDS
CAGATGAAAGAGAAACGTGA+AGG 0.595686 8_1:+87241419 None:intergenic
CAAAGGATTTCTCCTGCAGA+CGG 0.597971 8_1:+87239112 None:intergenic
CATTGTTAAGGAGGAGACGA+GGG 0.610651 8_1:+87239272 None:intergenic
GTATAAGCTTCAGCTTAACT+GGG 0.615494 8_1:-87239050 Msa1222840:CDS
TCATCATCTAATGCAACTGA+AGG 0.627900 8_1:+87238803 None:intergenic
TTCTCCATCCATCACCGCCG+CGG 0.629977 8_1:-87241286 Msa1222840:five_prime_UTR
ATCCACCACTACACCACCGC+CGG 0.632180 8_1:-87241333 Msa1222840:five_prime_UTR
AACTTCTTGATTACAAACGA+GGG 0.639263 8_1:-87238967 Msa1222840:CDS
GCTCGTCTAGCAACCATATG+GGG 0.642137 8_1:+87238825 None:intergenic
GAACTTCTTGATTACAAACG+AGG 0.642628 8_1:-87238968 Msa1222840:CDS
GAAAGAGGAGAGTGGTCTCG+CGG 0.647733 8_1:+87241306 None:intergenic
TGATTCTATCAAACTTACTG+TGG 0.651073 8_1:-87238361 Msa1222840:three_prime_UTR
TGGATGGAGAAAGAGGAGAG+TGG 0.651784 8_1:+87241298 None:intergenic
ACTTATAGATATGCTTGACC+GGG 0.653298 8_1:-87238642 Msa1222840:CDS
ATTGCAGAACACAGGAAACA+GGG 0.655611 8_1:-87238755 Msa1222840:CDS
AGTACATTATTGCAGAACAC+AGG 0.673742 8_1:-87238763 Msa1222840:CDS
ATTGTTAAGGAGGAGACGAG+GGG 0.674115 8_1:+87239273 None:intergenic
AGATGCTTTCAATGGGCCAG+CGG 0.680942 8_1:-87238886 Msa1222840:CDS
TGCCACCAAGGTTTCCAAGG+AGG 0.687258 8_1:-87238670 Msa1222840:CDS
TTGTTAAGGAGGAGACGAGG+GGG 0.688535 8_1:+87239274 None:intergenic
AAGAAGAAGGAGAGTAACCG+CGG 0.722934 8_1:+87241269 None:intergenic
AAGAAGGAGAGTAACCGCGG+CGG 0.769131 8_1:+87241272 None:intergenic
GCAGAACACAGGAAACAGGG+AGG 0.788797 8_1:-87238752 Msa1222840:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTGTAAAATTGATTTTAA+CGG - chr8_1:87239436-87239455 Msa1222840:intron 10.0%
!! GAAATATTATTATTACTGAA+GGG + chr8_1:87238439-87238458 None:intergenic 15.0%
!! TTAACAATTAACAACAATTA+GGG + chr8_1:87238787-87238806 None:intergenic 15.0%
!! TTTAACAATTAACAACAATT+AGG + chr8_1:87238788-87238807 None:intergenic 15.0%
!! AAGTATAATATTATTGATGT+AGG - chr8_1:87239018-87239037 Msa1222840:CDS 15.0%
!!! TTGTGACATTTTATTAATTT+AGG - chr8_1:87241336-87241355 Msa1222840:five_prime_UTR 15.0%
!! GGAAATATTATTATTACTGA+AGG + chr8_1:87238440-87238459 None:intergenic 20.0%
!! TGAATTTATCAACTAACAAA+AGG + chr8_1:87238858-87238877 None:intergenic 20.0%
!!! AAGCAAATTTTTTTTACCAA+TGG - chr8_1:87239859-87239878 Msa1222840:intron 20.0%
!!! AGCAAATTTTTTTTACCAAT+GGG - chr8_1:87239860-87239879 Msa1222840:intron 20.0%
!! AATTTCATGTGATAAAAGAA+AGG - chr8_1:87239887-87239906 Msa1222840:intron 20.0%
!! ATTTCATGTGATAAAAGAAA+GGG - chr8_1:87239888-87239907 Msa1222840:intron 20.0%
!!! AAAGCATTAATCTGAATTTA+CGG - chr8_1:87240545-87240564 Msa1222840:intron 20.0%
! CTTACAAGTTACAACAATTA+GGG + chr8_1:87238687-87238706 None:intergenic 25.0%
! CAAATCAGAATCATAATTGA+AGG + chr8_1:87238734-87238753 None:intergenic 25.0%
! TAACAAAAGGACAGTAAATA+AGG + chr8_1:87238845-87238864 None:intergenic 25.0%
! ATCTTTGTAAAGAGAGTAAA+GGG + chr8_1:87238891-87238910 None:intergenic 25.0%
! AATCTTTGTAAAGAGAGTAA+AGG + chr8_1:87238892-87238911 None:intergenic 25.0%
! ATTACTTGTTTAAGTCTTTG+TGG - chr8_1:87238958-87238977 Msa1222840:CDS 25.0%
!!! GCATTTTAACTACATATCAT+TGG + chr8_1:87239131-87239150 None:intergenic 25.0%
!!! GAATCGATTCTATTTTCAAA+AGG - chr8_1:87239290-87239309 Msa1222840:CDS 25.0%
! TGAGATGAAGAATAACAATA+AGG + chr8_1:87239682-87239701 None:intergenic 25.0%
! TTAAAAATTTGGACCTATTC+CGG - chr8_1:87239775-87239794 Msa1222840:intron 25.0%
! TTTCATGTGATAAAAGAAAG+GGG - chr8_1:87239889-87239908 Msa1222840:intron 25.0%
!!! AGTGTCATTTACTATTTAGA+AGG - chr8_1:87240046-87240065 Msa1222840:intron 25.0%
! ACTATTTAGAAGGATTCATA+AGG - chr8_1:87240056-87240075 Msa1222840:intron 25.0%
! AAGGATTCATAAGGAATAAA+GGG - chr8_1:87240065-87240084 Msa1222840:intron 25.0%
! ATGTCTAATACAAAGTCAAT+CGG + chr8_1:87240096-87240115 None:intergenic 25.0%
! TTTATTTGTTTATTGGCAGT+TGG - chr8_1:87240134-87240153 Msa1222840:intron 25.0%
!! AAACTTGAGTAACTATCTTT+TGG + chr8_1:87240199-87240218 None:intergenic 25.0%
!!! ATAGTTACTCAAGTTTGTTA+AGG - chr8_1:87240203-87240222 Msa1222840:intron 25.0%
!! TTTTCATCAATCCCAAATTA+AGG + chr8_1:87240295-87240314 None:intergenic 25.0%
! TAATCTGAATTTACGGATAT+TGG - chr8_1:87240552-87240571 Msa1222840:intron 25.0%
!! TTGTAGATTTTTGAATGTCA+TGG + chr8_1:87240815-87240834 None:intergenic 25.0%
! AATACAAAAGTCAACTACAT+AGG + chr8_1:87241365-87241384 None:intergenic 25.0%
!!! CATACAAAAAGCTATTTTCA+GGG + chr8_1:87241465-87241484 None:intergenic 25.0%
! TGATAGAATCATTGCAAATT+TGG + chr8_1:87241525-87241544 None:intergenic 25.0%
!!! AAGGGTATTTTTGTCATTTC+CGG + chr8_1:87238421-87238440 None:intergenic 30.0%
CCTTACAAGTTACAACAATT+AGG + chr8_1:87238688-87238707 None:intergenic 30.0%
! CCTAATTGTTGTAACTTGTA+AGG - chr8_1:87238685-87238704 Msa1222840:CDS 30.0%
CAATTAACAACAATTAGGGT+TGG + chr8_1:87238783-87238802 None:intergenic 30.0%
! TTTTAATCATAGCCTAGTGA+TGG - chr8_1:87238918-87238937 Msa1222840:CDS 30.0%
!! ATTAAGCTTTGAATTTGGAG+CGG + chr8_1:87239066-87239085 None:intergenic 30.0%
!! ACTCCATTAAGCTTTGAATT+TGG + chr8_1:87239071-87239090 None:intergenic 30.0%
AAATTCAAAGCTTAATGGAG+TGG - chr8_1:87239070-87239089 Msa1222840:CDS 30.0%
!! CACAACTTTAAAGTACTAAC+CGG - chr8_1:87239221-87239240 Msa1222840:CDS 30.0%
TGGATAAATGTAGTTTCTTC+CGG + chr8_1:87239243-87239262 None:intergenic 30.0%
! CGATTCTATTTTCAAAAGGA+AGG - chr8_1:87239294-87239313 Msa1222840:CDS 30.0%
!!! CTTCATCCGATATTGTTTTT+TGG - chr8_1:87239350-87239369 Msa1222840:five_prime_UTR 30.0%
! TTGTTATTCTTCATCTCACT+TGG - chr8_1:87239684-87239703 Msa1222840:intron 30.0%
GAAGGATTCATAAGGAATAA+AGG - chr8_1:87240064-87240083 Msa1222840:intron 30.0%
AGGATTCATAAGGAATAAAG+GGG - chr8_1:87240066-87240085 Msa1222840:intron 30.0%
! GCATGATAAATTTGGGATTA+TGG + chr8_1:87240254-87240273 None:intergenic 30.0%
GGAATTGGCATGATAAATTT+GGG + chr8_1:87240261-87240280 None:intergenic 30.0%
! TCATCAGCAACACTAATTTT+AGG - chr8_1:87240517-87240536 Msa1222840:intron 30.0%
AACTTCTTGATTACAAACGA+GGG - chr8_1:87240928-87240947 Msa1222840:intron 30.0%
ATGGAATCTTCTATCTCAAT+GGG + chr8_1:87241194-87241213 None:intergenic 30.0%
AAAGTTAACTAATATCTGCC+CGG + chr8_1:87241274-87241293 None:intergenic 30.0%
! CTTTTGTATTAGAGTCTTCT+TGG - chr8_1:87241375-87241394 Msa1222840:five_prime_UTR 30.0%
!! CCATACAAAAAGCTATTTTC+AGG + chr8_1:87241466-87241485 None:intergenic 30.0%
! CCTGAAAATAGCTTTTTGTA+TGG - chr8_1:87241463-87241482 Msa1222840:five_prime_UTR 30.0%
TGATTCTATCAAACTTACTG+TGG - chr8_1:87241534-87241553 Msa1222840:five_prime_UTR 30.0%
AAAACGCAGCAGAAAAACAA+GGG - chr8_1:87238357-87238376 Msa1222840:three_prime_UTR 35.0%
! AGAAAAACAAGGGTATAGAC+TGG - chr8_1:87238367-87238386 Msa1222840:three_prime_UTR 35.0%
GAAGGGAAATGAAACTGAAA+TGG + chr8_1:87238461-87238480 None:intergenic 35.0%
AGATGAAAGAGAAACGTGAA+GGG + chr8_1:87238478-87238497 None:intergenic 35.0%
TTCACTTTCTTGTTCTCACT+TGG + chr8_1:87238506-87238525 None:intergenic 35.0%
GTGAGAACAAGAAAGTGAAA+CGG - chr8_1:87238507-87238526 Msa1222840:three_prime_UTR 35.0%
TGAGAACAAGAAAGTGAAAC+GGG - chr8_1:87238508-87238527 Msa1222840:three_prime_UTR 35.0%
GCTCTCTAAATTGAAGAAGA+AGG + chr8_1:87238642-87238661 None:intergenic 35.0%
GTTACAACAATTAGGGTTTG+TGG + chr8_1:87238680-87238699 None:intergenic 35.0%
TAGAAAGTGAAACCATCACT+AGG + chr8_1:87238933-87238952 None:intergenic 35.0%
AAGTCTTTGTGGCAAATTCT+TGG - chr8_1:87238969-87238988 Msa1222840:CDS 35.0%
GCTCCAAATTCAAAGCTTAA+TGG - chr8_1:87239065-87239084 Msa1222840:CDS 35.0%
!! GTACTTTAAAGTTGTGCAAG+CGG + chr8_1:87239217-87239236 None:intergenic 35.0%
! CTTCAGCTTAACTTTTCTGT+TGG + chr8_1:87239263-87239282 None:intergenic 35.0%
!!! CATCCGATATTGTTTTTTGG+CGG - chr8_1:87239353-87239372 Msa1222840:five_prime_UTR 35.0%
GGTATAGTTGGAAACGAATT+TGG - chr8_1:87239410-87239429 Msa1222840:five_prime_UTR 35.0%
ATAGTTGGAAACGAATTTGG+AGG - chr8_1:87239413-87239432 Msa1222840:five_prime_UTR 35.0%
GTTTCCACAAAGCTAGAAAT+TGG + chr8_1:87239473-87239492 None:intergenic 35.0%
TGTCCAAACATCTACAAAAG+TGG - chr8_1:87239546-87239565 Msa1222840:intron 35.0%
!! TCACCACTTTTGTAGATGTT+TGG + chr8_1:87239552-87239571 None:intergenic 35.0%
AATAACAATAAGGTTGCTGC+CGG + chr8_1:87239672-87239691 None:intergenic 35.0%
!! TTGTTGTTTGAGCAAGTACT+CGG - chr8_1:87239798-87239817 Msa1222840:intron 35.0%
CACATGAAATTGAATCCCAT+TGG + chr8_1:87239878-87239897 None:intergenic 35.0%
GAAGCAATTTGACAAACAGT+TGG + chr8_1:87239968-87239987 None:intergenic 35.0%
GGATTCATAAGGAATAAAGG+GGG - chr8_1:87240067-87240086 Msa1222840:intron 35.0%
GATTCATAAGGAATAAAGGG+GGG - chr8_1:87240068-87240087 Msa1222840:intron 35.0%
GGGAATTGGCATGATAAATT+TGG + chr8_1:87240262-87240281 None:intergenic 35.0%
TCATCAATCCCAAATTAAGG+CGG + chr8_1:87240292-87240311 None:intergenic 35.0%
GATGAAAATGCTTGAACATC+AGG - chr8_1:87240307-87240326 Msa1222840:intron 35.0%
!! GTGATGTTCAATCACTTTTC+AGG - chr8_1:87240398-87240417 Msa1222840:intron 35.0%
TCATGCAAGAGACATTGTTA+AGG + chr8_1:87240638-87240657 None:intergenic 35.0%
TAAGCTGAAGCTTATACTGA+TGG + chr8_1:87240842-87240861 None:intergenic 35.0%
AGTATAAGCTTCAGCTTAAC+TGG - chr8_1:87240844-87240863 Msa1222840:intron 35.0%
GTATAAGCTTCAGCTTAACT+GGG - chr8_1:87240845-87240864 Msa1222840:intron 35.0%
TCTCATTAATTCCATGCTTG+AGG + chr8_1:87240875-87240894 None:intergenic 35.0%
TAATGAGAAGTCTACTGTTC+TGG - chr8_1:87240887-87240906 Msa1222840:intron 35.0%
GAACTTCTTGATTACAAACG+AGG - chr8_1:87240927-87240946 Msa1222840:intron 35.0%
AAAGCCTAAGATGCTTTCAA+TGG - chr8_1:87241001-87241020 Msa1222840:intron 35.0%
AAGCCTAAGATGCTTTCAAT+GGG - chr8_1:87241002-87241021 Msa1222840:intron 35.0%
TCATCATCTAATGCAACTGA+AGG + chr8_1:87241095-87241114 None:intergenic 35.0%
TCAGTTGCATTAGATGATGA+AGG - chr8_1:87241095-87241114 Msa1222840:intron 35.0%
AGTACATTATTGCAGAACAC+AGG - chr8_1:87241132-87241151 Msa1222840:intron 35.0%
CATGGAATCTTCTATCTCAA+TGG + chr8_1:87241195-87241214 None:intergenic 35.0%
CACTTATAGATATGCTTGAC+CGG - chr8_1:87241252-87241271 Msa1222840:five_prime_UTR 35.0%
ACTTATAGATATGCTTGACC+GGG - chr8_1:87241253-87241272 Msa1222840:five_prime_UTR 35.0%
AGGGCTCTTAAAATATTCCA+TGG + chr8_1:87241446-87241465 None:intergenic 35.0%
AACATTTGCCTCATTCTTAG+CGG + chr8_1:87241496-87241515 None:intergenic 35.0%
GAAAACGCAGCAGAAAAACA+AGG - chr8_1:87238356-87238375 Msa1222840:three_prime_UTR 40.0%
CAGATGAAAGAGAAACGTGA+AGG + chr8_1:87238479-87238498 None:intergenic 40.0%
!! TGGATCGATTTGCTATGCTT+GGG + chr8_1:87238547-87238566 None:intergenic 40.0%
AAGGTTACGACCAAACCAAA+GGG + chr8_1:87238826-87238845 None:intergenic 40.0%
TAAGGTTACGACCAAACCAA+AGG + chr8_1:87238827-87238846 None:intergenic 40.0%
TCTTTGTGGCAAATTCTTGG+AGG - chr8_1:87238972-87238991 Msa1222840:CDS 40.0%
CAAAGCTTAATGGAGTGGAA+TGG - chr8_1:87239075-87239094 Msa1222840:CDS 40.0%
TGGCCGCCAAAAAACAATAT+CGG + chr8_1:87239359-87239378 None:intergenic 40.0%
GAGCCAGACAAAAAAGTTTG+GGG + chr8_1:87239382-87239401 None:intergenic 40.0%
GGAGCCAGACAAAAAAGTTT+GGG + chr8_1:87239383-87239402 None:intergenic 40.0%
!! AGCTCCAATTTCTAGCTTTG+TGG - chr8_1:87239466-87239485 Msa1222840:intron 40.0%
GATGTTTGGACAACTGCAAA+CGG + chr8_1:87239538-87239557 None:intergenic 40.0%
ACTCTGTAAACTCACGTTTG+AGG - chr8_1:87239583-87239602 Msa1222840:intron 40.0%
!!! AGAACACGTTTTAGAGAGAC+AGG + chr8_1:87239732-87239751 None:intergenic 40.0%
GTACTTGCTCAAACAACAAC+CGG + chr8_1:87239797-87239816 None:intergenic 40.0%
TTTGAGCAAGTACTCGGTTA+TGG - chr8_1:87239804-87239823 Msa1222840:intron 40.0%
TTTGCTTGACAGACATGAAC+TGG + chr8_1:87239846-87239865 None:intergenic 40.0%
GCAATTTGACAAACAGTTGG+AGG + chr8_1:87239965-87239984 None:intergenic 40.0%
! ATTGGCAGTTGGAGATTTTC+TGG - chr8_1:87240145-87240164 Msa1222840:intron 40.0%
! TTGGCAGTTGGAGATTTTCT+GGG - chr8_1:87240146-87240165 Msa1222840:intron 40.0%
!! CAAATTAAGGCGGGTATTGA+GGG + chr8_1:87240282-87240301 None:intergenic 40.0%
CTCAATACCCGCCTTAATTT+GGG - chr8_1:87240281-87240300 Msa1222840:intron 40.0%
CATCAATCCCAAATTAAGGC+GGG + chr8_1:87240291-87240310 None:intergenic 40.0%
! ATTTTACAGTGAGCATGTGC+TGG - chr8_1:87240466-87240485 Msa1222840:intron 40.0%
! AGTGTTGCTGATGACGAAAT+TGG + chr8_1:87240511-87240530 None:intergenic 40.0%
GAATTTACGGATATTGGCAG+TGG - chr8_1:87240558-87240577 Msa1222840:intron 40.0%
TGCAAGAGACATTGTTAAGG+AGG + chr8_1:87240635-87240654 None:intergenic 40.0%
GTGAATGTCTCTCTTCATGA+TGG - chr8_1:87240684-87240703 Msa1222840:intron 40.0%
AATGTCTCTCTTCATGATGG+AGG - chr8_1:87240687-87240706 Msa1222840:intron 40.0%
! ATGTCTCTCTTCATGATGGA+GGG - chr8_1:87240688-87240707 Msa1222840:intron 40.0%
TCTTGATTACAAACGAGGGA+AGG - chr8_1:87240932-87240951 Msa1222840:intron 40.0%
!! TAAGCTTGCACTTGAGTTGA+TGG - chr8_1:87240956-87240975 Msa1222840:intron 40.0%
!! AAGCTTGCACTTGAGTTGAT+GGG - chr8_1:87240957-87240976 Msa1222840:intron 40.0%
TATTGCAGAACACAGGAAAC+AGG - chr8_1:87241139-87241158 Msa1222840:intron 40.0%
ATTGCAGAACACAGGAAACA+GGG - chr8_1:87241140-87241159 Msa1222840:intron 40.0%
TAGAAGATTCCATGCTCTTG+AGG - chr8_1:87241201-87241220 Msa1222840:intron 40.0%
TCTATAAGTGTCATCCTCCT+TGG + chr8_1:87241242-87241261 None:intergenic 40.0%
! CATGGAAGATACAAGAGCAT+AGG + chr8_1:87241428-87241447 None:intergenic 40.0%
CTATGCTCTTGTATCTTCCA+TGG - chr8_1:87241426-87241445 Msa1222840:five_prime_UTR 40.0%
GTAGTATACCGCTAAGAATG+AGG - chr8_1:87241485-87241504 Msa1222840:five_prime_UTR 40.0%
GCTATGCTTGGGAGAAGAAA+AGG + chr8_1:87238536-87238555 None:intergenic 45.0%
!! GTGGATCGATTTGCTATGCT+TGG + chr8_1:87238548-87238567 None:intergenic 45.0%
AAGAAGAAGGAGAGTAACCG+CGG + chr8_1:87238629-87238648 None:intergenic 45.0%
TGTTCTTTGCCCCTTTGGTT+TGG - chr8_1:87238813-87238832 Msa1222840:CDS 45.0%
AGGTTACGACCAAACCAAAG+GGG + chr8_1:87238825-87238844 None:intergenic 45.0%
CCAGACAAAAAAGTTTGGGG+TGG + chr8_1:87239379-87239398 None:intergenic 45.0%
!!! CCACCCCAAACTTTTTTGTC+TGG - chr8_1:87239376-87239395 Msa1222840:five_prime_UTR 45.0%
CGGAGCCAGACAAAAAAGTT+TGG + chr8_1:87239384-87239403 None:intergenic 45.0%
TTTCCAACTATACCCAGTGG+CGG + chr8_1:87239404-87239423 None:intergenic 45.0%
TCGTTTCCAACTATACCCAG+TGG + chr8_1:87239407-87239426 None:intergenic 45.0%
GCTTTGTGGAAACGTGAGTT+TGG - chr8_1:87239480-87239499 Msa1222840:intron 45.0%
GCTCAAACAACAACCGGAAT+AGG + chr8_1:87239791-87239810 None:intergenic 45.0%
ACAGTTGGAGGACAACAACT+AGG + chr8_1:87239953-87239972 None:intergenic 45.0%
! TGGCAGTTGGAGATTTTCTG+GGG - chr8_1:87240147-87240166 Msa1222840:intron 45.0%
! AGGTGAGTGCTCTTTTGTTC+CGG - chr8_1:87240223-87240242 Msa1222840:intron 45.0%
! ATTTGGGATTATGGTCACCC+CGG + chr8_1:87240245-87240264 None:intergenic 45.0%
! CCAAATTAAGGCGGGTATTG+AGG + chr8_1:87240283-87240302 None:intergenic 45.0%
CCTCAATACCCGCCTTAATT+TGG - chr8_1:87240280-87240299 Msa1222840:intron 45.0%
ATTGTTAAGGAGGAGACGAG+GGG + chr8_1:87240625-87240644 None:intergenic 45.0%
CATTGTTAAGGAGGAGACGA+GGG + chr8_1:87240626-87240645 None:intergenic 45.0%
ACATTGTTAAGGAGGAGACG+AGG + chr8_1:87240627-87240646 None:intergenic 45.0%
CACATTAGACAGAACTTGCG+AGG + chr8_1:87240667-87240686 None:intergenic 45.0%
! TGTCTCTCTTCATGATGGAG+GGG - chr8_1:87240689-87240708 Msa1222840:intron 45.0%
CTTGTGCTAACAGGTGCAAA+TGG - chr8_1:87240714-87240733 Msa1222840:intron 45.0%
AGCTAACATGCGCATGAAAG+TGG + chr8_1:87240751-87240770 None:intergenic 45.0%
ACTTTCATGCGCATGTTAGC+TGG - chr8_1:87240750-87240769 Msa1222840:intron 45.0%
CTTTCATGCGCATGTTAGCT+GGG - chr8_1:87240751-87240770 Msa1222840:intron 45.0%
CAAAGGATTTCTCCTGCAGA+CGG + chr8_1:87240786-87240805 None:intergenic 45.0%
! GCAGGAGAAATCCTTTGGAA+TGG - chr8_1:87240789-87240808 Msa1222840:intron 45.0%
GAATGTCATGGCCATTCCAA+AGG + chr8_1:87240803-87240822 None:intergenic 45.0%
!! TGGCCCATTGAAAGCATCTT+AGG + chr8_1:87241008-87241027 None:intergenic 45.0%
! CAAGTTGCAATCTTTTCCGC+TGG + chr8_1:87241028-87241047 None:intergenic 45.0%
ACAGGGAGGAATTGTGATTG+TGG - chr8_1:87241157-87241176 Msa1222840:intron 45.0%
!!! ATAATTTTTTTATTTTTTTC+TGG + chr8_1:87238395-87238414 None:intergenic 5.0%
!! AAAATAAAAAAATTATATAC+CGG - chr8_1:87238399-87238418 Msa1222840:three_prime_UTR 5.0%
!!! TTTTTAAAATGAATATTAAT+TGG + chr8_1:87239762-87239781 None:intergenic 5.0%
!!! TAATATTCATTTTAAAAATT+TGG - chr8_1:87239764-87239783 Msa1222840:intron 5.0%
!!! TTAAAATTTTATTTGTTTAT+TGG - chr8_1:87240127-87240146 Msa1222840:intron 5.0%
TGGATGGAGAAAGAGGAGAG+TGG + chr8_1:87238600-87238619 None:intergenic 50.0%
CCAAAGGGGCAAAGAACAAC+AGG + chr8_1:87238811-87238830 None:intergenic 50.0%
CCTGTTGTTCTTTGCCCCTT+TGG - chr8_1:87238808-87238827 Msa1222840:CDS 50.0%
! GGTTTTACGCTGGCGAGAAA+GGG + chr8_1:87239651-87239670 None:intergenic 50.0%
CTTTCTCGCCAGCGTAAAAC+CGG - chr8_1:87239650-87239669 Msa1222840:intron 50.0%
! GGCAGTTGGAGATTTTCTGG+GGG - chr8_1:87240148-87240167 Msa1222840:intron 50.0%
!! TGGAGATTTTCTGGGGGATG+AGG - chr8_1:87240154-87240173 Msa1222840:intron 50.0%
! GGTGAGTGCTCTTTTGTTCC+GGG - chr8_1:87240224-87240243 Msa1222840:intron 50.0%
! GTGAGTGCTCTTTTGTTCCG+GGG - chr8_1:87240225-87240244 Msa1222840:intron 50.0%
!! AAGGCGGGTATTGAGGGAAT+TGG + chr8_1:87240276-87240295 None:intergenic 50.0%
TTGTTAAGGAGGAGACGAGG+GGG + chr8_1:87240624-87240643 None:intergenic 50.0%
GCTAACAGGTGCAAATGGCT+CGG - chr8_1:87240719-87240738 Msa1222840:intron 50.0%
CTAACAGGTGCAAATGGCTC+GGG - chr8_1:87240720-87240739 Msa1222840:intron 50.0%
CGTCTGCAGGAGAAATCCTT+TGG - chr8_1:87240784-87240803 Msa1222840:intron 50.0%
!! TGCACTTGAGTTGATGGGAC+TGG - chr8_1:87240962-87240981 Msa1222840:intron 50.0%
!! GCACTTGAGTTGATGGGACT+GGG - chr8_1:87240963-87240982 Msa1222840:intron 50.0%
! GTTGATGGGACTGGGAAGAT+TGG - chr8_1:87240971-87240990 Msa1222840:intron 50.0%
AGATGCTTTCAATGGGCCAG+CGG - chr8_1:87241009-87241028 Msa1222840:intron 50.0%
GCGATCAATTGCGAGCAATC+TGG + chr8_1:87241051-87241070 None:intergenic 50.0%
TCGCAATTGATCGCCCCATA+TGG - chr8_1:87241057-87241076 Msa1222840:intron 50.0%
GCTCGTCTAGCAACCATATG+GGG + chr8_1:87241073-87241092 None:intergenic 50.0%
GGCTCGTCTAGCAACCATAT+GGG + chr8_1:87241074-87241093 None:intergenic 50.0%
AGGCTCGTCTAGCAACCATA+TGG + chr8_1:87241075-87241094 None:intergenic 50.0%
ATCCTCCTTGGAAACCTTGG+TGG + chr8_1:87241230-87241249 None:intergenic 50.0%
GTCATCCTCCTTGGAAACCT+TGG + chr8_1:87241233-87241252 None:intergenic 50.0%
GAAAGAGGAGAGTGGTCTCG+CGG + chr8_1:87238592-87238611 None:intergenic 55.0%
!! GCGGTGATGGATGGAGAAAG+AGG + chr8_1:87238607-87238626 None:intergenic 55.0%
AAGAAGGAGAGTAACCGCGG+CGG + chr8_1:87238626-87238645 None:intergenic 55.0%
!! TTTTTGTCTGGCTCCGCCAC+TGG - chr8_1:87239388-87239407 Msa1222840:five_prime_UTR 55.0%
!! TTTTGTCTGGCTCCGCCACT+GGG - chr8_1:87239389-87239408 Msa1222840:five_prime_UTR 55.0%
AAGGGATGGGCAGCGATGAT+GGG + chr8_1:87239633-87239652 None:intergenic 55.0%
AAAGGGATGGGCAGCGATGA+TGG + chr8_1:87239634-87239653 None:intergenic 55.0%
TACGCTGGCGAGAAAGGGAT+GGG + chr8_1:87239646-87239665 None:intergenic 55.0%
TTACGCTGGCGAGAAAGGGA+TGG + chr8_1:87239647-87239666 None:intergenic 55.0%
! CGGTTTTACGCTGGCGAGAA+AGG + chr8_1:87239652-87239671 None:intergenic 55.0%
AACTGGGTCTGCCTCAAGCA+TGG - chr8_1:87240861-87240880 Msa1222840:intron 55.0%
! GGGACTGGGAAGATTGGCTA+AGG - chr8_1:87240977-87240996 Msa1222840:intron 55.0%
GCAGAACACAGGAAACAGGG+AGG - chr8_1:87241143-87241162 Msa1222840:intron 55.0%
TGCCACCAAGGTTTCCAAGG+AGG - chr8_1:87241225-87241244 Msa1222840:five_prime_UTR 55.0%
ATCCACCACTACACCACCGC+CGG - chr8_1:87238562-87238581 Msa1222840:three_prime_UTR 60.0%
TTCTCCATCCATCACCGCCG+CGG - chr8_1:87238609-87238628 Msa1222840:exon 60.0%
GCTCCGCCACTGGGTATAGT+TGG - chr8_1:87239398-87239417 Msa1222840:five_prime_UTR 60.0%
!! GCAGCGATGATGGGGCTGTT+TGG + chr8_1:87239624-87239643 None:intergenic 60.0%
AGGGATGGGCAGCGATGATG+GGG + chr8_1:87239632-87239651 None:intergenic 60.0%
!!! GGTTGCTGCCGGTTTTACGC+TGG + chr8_1:87239661-87239680 None:intergenic 60.0%
GGGGGATGAGGACTCATGTC+TGG - chr8_1:87240166-87240185 Msa1222840:intron 60.0%
TTAAGGAGGAGACGAGGGGG+TGG + chr8_1:87240621-87240640 None:intergenic 60.0%
!! GGAGGGGCACTTGTGCTAAC+AGG - chr8_1:87240705-87240724 Msa1222840:intron 60.0%
! GGGTTTTCTCGTCCGTCTGC+AGG - chr8_1:87240771-87240790 Msa1222840:intron 60.0%
TGGTGGCAGCCTCAAGAGCA+TGG + chr8_1:87241213-87241232 None:intergenic 60.0%
TGCTCTTGAGGCTGCCACCA+AGG - chr8_1:87241213-87241232 Msa1222840:five_prime_UTR 60.0%
GGCTGCCACCAAGGTTTCCA+AGG - chr8_1:87241222-87241241 Msa1222840:five_prime_UTR 60.0%
AGAGTGGTCTCGCGGCTCAC+CGG + chr8_1:87238584-87238603 None:intergenic 65.0%
!! GTAACCGCGGCGGTGATGGA+TGG + chr8_1:87238616-87238635 None:intergenic 65.0%
GAGAGTAACCGCGGCGGTGA+TGG + chr8_1:87238620-87238639 None:intergenic 65.0%
CACCGGCGGTGGTGTAGTGG+TGG + chr8_1:87238567-87238586 None:intergenic 70.0%
GCTCACCGGCGGTGGTGTAG+TGG + chr8_1:87238570-87238589 None:intergenic 70.0%
AGGAGGAGACGAGGGGGTGG+AGG + chr8_1:87240618-87240637 None:intergenic 70.0%
GTGGTCTCGCGGCTCACCGG+CGG + chr8_1:87238581-87238600 None:intergenic 75.0%
! GTCTCGCGGCTCACCGGCGG+TGG + chr8_1:87238578-87238597 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 87238350 87241567 87238350 ID=Msa1222840;Name=Msa1222840
chr8_1 mRNA 87238350 87241567 87238350 ID=Msa1222840-mRNA-1;Parent=Msa1222840;Name=Msa1222840-mRNA-1;_AED=0.23;_eAED=0.23;_QI=517|0.5|0.66|1|0|0|3|278|229
chr8_1 exon 87238350 87239442 87238350 ID=Msa1222840-mRNA-1:exon:31463;Parent=Msa1222840-mRNA-1
chr8_1 exon 87239730 87239764 87239730 ID=Msa1222840-mRNA-1:exon:31462;Parent=Msa1222840-mRNA-1
chr8_1 exon 87241211 87241567 87241211 ID=Msa1222840-mRNA-1:exon:31461;Parent=Msa1222840-mRNA-1
chr8_1 five_prime_UTR 87241211 87241567 87241211 ID=Msa1222840-mRNA-1:five_prime_utr;Parent=Msa1222840-mRNA-1
chr8_1 five_prime_UTR 87239730 87239764 87239730 ID=Msa1222840-mRNA-1:five_prime_utr;Parent=Msa1222840-mRNA-1
chr8_1 five_prime_UTR 87239318 87239442 87239318 ID=Msa1222840-mRNA-1:five_prime_utr;Parent=Msa1222840-mRNA-1
chr8_1 CDS 87238628 87239317 87238628 ID=Msa1222840-mRNA-1:cds;Parent=Msa1222840-mRNA-1
chr8_1 three_prime_UTR 87238350 87238627 87238350 ID=Msa1222840-mRNA-1:three_prime_utr;Parent=Msa1222840-mRNA-1
Gene Sequence

>Msa1222840

ATGTCTATTAGAAAACCTCCACCCCCTCGTCTCCTCCTTAACAATGTCTCTTGCATGAGAAATGCCTCGCAAGTTCTGTCTAATGTGAATGTCTCTCTTCATGATGGAGGGGCACTTGTGCTAACAGGTGCAAATGGCTCGGGAAAGTCCACTTTCATGCGCATGTTAGCTGGGTTTTCTCGTCCGTCTGCAGGAGAAATCCTTTGGAATGGCCATGACATTCAAAAATCTACAATCTTCCATCAGTATAAGCTTCAGCTTAACTGGGTCTGCCTCAAGCATGGAATTAATGAGAAGTCTACTGTTCTGGACAATGTTGAGTTGTTTGAACTTCTTGATTACAAACGAGGGAAGGCTAAGCTTGCACTTGAGTTGATGGGACTGGGAAGATTGGCTAAGGAAAAGCCTAAGATGCTTTCAATGGGCCAGCGGAAAAGATTGCAACTTGCCAGATTGCTCGCAATTGATCGCCCCATATGGTTGCTAGACGAGCCTTCAGTTGCATTAGATGATGAAGGTGTAAAGTTACTCGAGTACATTATTGCAGAACACAGGAAACAGGGAGGAATTGTGATTGTGGCGACTCATTTACCCATTGAGATAGAAGATTCCATGCTCTTGAGGCTGCCACCAAGGTTTCCAAGGAGGATGACACTTATAGATATGCTTGACCGGGCAGATATTAGTTAA
Protein sequence

>Msa1222840

MSIRKPPPPRLLLNNVSCMRNASQVLSNVNVSLHDGGALVLTGANGSGKSTFMRMLAGFSRPSAGEILWNGHDIQKSTIFHQYKLQLNWVCLKHGINEKSTVLDNVELFELLDYKRGKAKLALELMGLGRLAKEKPKMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDDEGVKLLEYIIAEHRKQGGIVIVATHLPIEIEDSMLLRLPPRFPRRMTLIDMLDRADIS*