AlfalfaGEDB | Msa1264830

M. sativa cultivar zhongmu-4 / Msa1264830

KEGG: K02136
GO: GO:0003674 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005753 GO:0008270 GO:0009507 GO:0009536 GO:0016020 GO:0016469 GO:0019866 GO:0030312 GO:0031090 GO:0031966 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032991 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045259 GO:0046872 GO:0046914 GO:0070013 GO:0071944 GO:0098796 GO:0098798 GO:0098800
PFAM: PF00231.22

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1264830	XP_013458562.1	99.388	327	2	0	1	327	1	327	0.0	659

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1264830	sp\|P26360\|ATPG3_IPOBA	81.707	328	57	3	1	327	1	326	0.0	549

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0108750	Msa1264830	0.839329	1.691674e-57	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1264830	MtrunA17_Chr4g0073341	99.388	327	2	0	1	327	1	327	0.0	659
Msa1264830	MtrunA17_Chr2g0288451	28.455	369	200	10	17	325	9	373	1.96e-26	107
Msa1264830	MtrunA17_Chr3g0099081	28.261	322	179	10	52	325	30	347	1.11e-25	105

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1264830	AT2G33040.1	78.769	325	65	3	1	325	1	321	0.0	522
Msa1264830	AT4G04640.1	29.296	355	191	9	15	324	32	371	1.62e-30	119
Msa1264830	AT1G15700.1	28.000	325	176	9	52	325	66	383	1.41e-25	105

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Find 94 sgRNAs with CRISPR-Local

Find 360 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAATTCCAGAAATATC+TGG	0.429809	8_2:+68409137	None:intergenic
AAACGATTATTATTATAAAA+AGG	0.224110	8_2:+68409195	None:intergenic
AAAGATACCTATTATAAGTG+AGG	0.568709	8_2:+68409533	None:intergenic
AACTACGTGCTGTTCAAACC+AGG	0.516036	8_2:-68414122	Msa1264830:CDS
AACTAGCCTTGGGGATTTCT+TGG	0.282149	8_2:-68409164	Msa1264830:three_prime_UTR
AAGACCTTTGTCTGAAGAAA+CGG	0.482952	8_2:+68413605	None:intergenic
AAGATACCTATTATAAGTGA+GGG	0.587593	8_2:+68409534	None:intergenic
AATAACAGTTCGAGAAACAA+AGG	0.603461	8_2:+68409037	None:intergenic
AATAGATGAAAGTACCTCGG+GGG	0.741176	8_2:+68412414	None:intergenic
AATGAAAGTACCAATTTGAG+TGG	0.565521	8_2:+68414333	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CAGAACTGTATTAAAAAGCT+AGG	-	chr8_2:68409086-68409105	Msa1264830:three_prime_UTR	30.0%
TACAGAGATCAATCTTCTAT+TGG	-	chr8_2:68409343-68409362	Msa1264830:CDS	30.0%
AAATACAACTGATGCAATTG+TGG	+	chr8_2:68410263-68410282	None:intergenic	30.0%
TTGAAATTGCAGACAATTGT+GGG	+	chr8_2:68410287-68410306	None:intergenic	30.0%
AACAGTATTTCACATTGCAA+AGG	+	chr8_2:68410348-68410367	None:intergenic	30.0%
ACATACTTTGTCTCTTTATC+AGG	+	chr8_2:68410489-68410508	None:intergenic	30.0%
AGAGACAAAGTATGTCATAT+TGG	-	chr8_2:68410494-68410513	Msa1264830:intron	30.0%
GAGACAAAGTATGTCATATT+GGG	-	chr8_2:68410495-68410514	Msa1264830:intron	30.0%
AATATGGACATTGCTCTTAA+CGG	-	chr8_2:68410700-68410719	Msa1264830:intron	30.0%
CTAAACAATGGGTATATACT+CGG	+	chr8_2:68411146-68411165	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_2	gene	68408993	68414745	68408993	ID=Msa1264830;Name=Msa1264830
chr8_2	mRNA	68408993	68414745	68408993	ID=Msa1264830-mRNA-1;Parent=Msa1264830;Name=Msa1264830-mRNA-1;_AED=0.07;_eAED=0.07;_QI=164\|1\|1\|1\|1\|1\|9\|327\|327
chr8_2	exon	68408993	68409389	68408993	ID=Msa1264830-mRNA-1:exon:22693;Parent=Msa1264830-mRNA-1
chr8_2	exon	68409541	68409662	68409541	ID=Msa1264830-mRNA-1:exon:22692;Parent=Msa1264830-mRNA-1
chr8_2	exon	68412104	68412223	68412104	ID=Msa1264830-mRNA-1:exon:22691;Parent=Msa1264830-mRNA-1
chr8_2	exon	68412429	68412551	68412429	ID=Msa1264830-mRNA-1:exon:22690;Parent=Msa1264830-mRNA-1
chr8_2	exon	68413127	68413254	68413127	ID=Msa1264830-mRNA-1:exon:22689;Parent=Msa1264830-mRNA-1
chr8_2	exon	68413544	68413657	68413544	ID=Msa1264830-mRNA-1:exon:22688;Parent=Msa1264830-mRNA-1
chr8_2	exon	68414064	68414216	68414064	ID=Msa1264830-mRNA-1:exon:22687;Parent=Msa1264830-mRNA-1
chr8_2	exon	68414344	68414390	68414344	ID=Msa1264830-mRNA-1:exon:22686;Parent=Msa1264830-mRNA-1
chr8_2	exon	68414475	68414745	68414475	ID=Msa1264830-mRNA-1:exon:22685;Parent=Msa1264830-mRNA-1
chr8_2	five_prime_UTR	68414582	68414745	68414582	ID=Msa1264830-mRNA-1:five_prime_utr;Parent=Msa1264830-mRNA-1
chr8_2	CDS	68414475	68414581	68414475	ID=Msa1264830-mRNA-1:cds;Parent=Msa1264830-mRNA-1
chr8_2	CDS	68414344	68414390	68414344	ID=Msa1264830-mRNA-1:cds;Parent=Msa1264830-mRNA-1
chr8_2	CDS	68414064	68414216	68414064	ID=Msa1264830-mRNA-1:cds;Parent=Msa1264830-mRNA-1
chr8_2	CDS	68413544	68413657	68413544	ID=Msa1264830-mRNA-1:cds;Parent=Msa1264830-mRNA-1
chr8_2	CDS	68413127	68413254	68413127	ID=Msa1264830-mRNA-1:cds;Parent=Msa1264830-mRNA-1
chr8_2	CDS	68412429	68412551	68412429	ID=Msa1264830-mRNA-1:cds;Parent=Msa1264830-mRNA-1
chr8_2	CDS	68412104	68412223	68412104	ID=Msa1264830-mRNA-1:cds;Parent=Msa1264830-mRNA-1
chr8_2	CDS	68409541	68409662	68409541	ID=Msa1264830-mRNA-1:cds;Parent=Msa1264830-mRNA-1
chr8_2	CDS	68409320	68409389	68409320	ID=Msa1264830-mRNA-1:cds;Parent=Msa1264830-mRNA-1
chr8_2	three_prime_UTR	68408993	68409319	68408993	ID=Msa1264830-mRNA-1:three_prime_utr;Parent=Msa1264830-mRNA-1

Gene Sequence

>Msa1264830

ATGGCGATGGCTGCTGCACTCCGACGCGAAGGGAAGCGTTTGGCTCCTCTCATGTCTTCTCAACCACCAATCAACACCACTCTCCGATCTCCTCTCATCTCTCCCTTAGATCAATCTTCTATTGGAGGAGCTCGTACTATTTCCACTCAAATTGTGAGAAATCGGATGAAGAGTGTCAAGAATATTCAGAAAATTACCAAGGCTATGAAGATGGTTGCTGCGTCTAAACTACGTGCTGTTCAAACCAGGGCTGAAAATTCACGTGGTTTGTGGCAGCCATTTACCGCTCTTCTCGGCGATGCTACAAGCGTTGATGTCAAGAAGAATGTTGTAATTACCGTTTCTTCAGACAAAGGTCTTTGTGGTGGAATCAACTCCACGTCTGTCAAGATAAGCAGGGCCTTGAGCAAGTTGAATTCTGGACCTGATAAAGAGACAAAGTATGTCATATTGGGAGAGAAGGCTAAGGCTCAGTTGATTCGTGACTCAAAGAAAGACATTGCACTTAGCTTAACTGAGATACAAAAGAATCCTCTGAATTATACTCAGGTTTCTGTCTTGGCTGATGACATTCTGAAAAACGTGGAGTATGATGCACTGAGGATTGTTTTCAACAGATTTCAATCCGTTGTACAATTTCTACCAACGGTGTCAACTATACTATCCCCCGAGATTGTTGAAAGAGAGGCTGAAGCTGGAGGAAGTCTCGGTGAACTGGATTCGTATGAGATTGAAGGGGGTGACACAAAATCAGAAATTCTTCAGAATCTGACCGAGTTCCAGTTTTCTTGCGTCATGTTCAATGCGGTGTTGGAGAATGCCTGCAGTGAGCAAGGAGCAAGGATGTCTGCCATGGACAGCTCTAGCAGGAATGCTGGGGATATGCTTGATCGTCTGACCCTCACTTATAATAGAACTCGTCAAGCATCAATTACCACCGAATTGATTGAGATTATCTCTGGAGCATCAGCACTGACAGGTTAA

Protein sequence

>Msa1264830

MAMAAALRREGKRLAPLMSSQPPINTTLRSPLISPLDQSSIGGARTISTQIVRNRMKSVKNIQKITKAMKMVAASKLRAVQTRAENSRGLWQPFTALLGDATSVDVKKNVVITVSSDKGLCGGINSTSVKISRALSKLNSGPDKETKYVILGEKAKAQLIRDSKKDIALSLTEIQKNPLNYTQVSVLADDILKNVEYDALRIVFNRFQSVVQFLPTVSTILSPEIVEREAEAGGSLGELDSYEIEGGDTKSEILQNLTEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGDMLDRLTLTYNRTRQASITTELIEIISGASALTG*