Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1264910 | XP_024637162.1 | 87.500 | 176 | 7 | 4 | 11 | 175 | 9 | 180 | 2.87e-101 | 299 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1264910 | A0A072URZ2 | 87.500 | 176 | 7 | 4 | 11 | 175 | 9 | 180 | 1.37e-101 | 299 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1264910 | Msa1303170 | 0.955991 | 8.409200e-114 | -8.615850e-47 |
| Msa0325510 | Msa1264910 | 0.828663 | 7.932814e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1264910 | MtrunA17_Chr4g0073221 | 87.500 | 176 | 7 | 4 | 11 | 175 | 9 | 180 | 2.64e-105 | 299 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 43 sgRNAs with CRISPR-Local
Find 201 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATTTCCAAACTGTTGTATT+TGG | 0.137059 | 8_2:-68537189 | None:intergenic |
| CATAGTTGATGGAATCATTT+TGG | 0.169533 | 8_2:+68539859 | Msa1264910:exon |
| AAAAGAGAGGCACTGGTTTA+AGG | 0.190542 | 8_2:+68537485 | Msa1264910:CDS |
| TTTCCGCTGCGCTTATTAAT+TGG | 0.228675 | 8_2:-68537239 | None:intergenic |
| TTTGTATTGTAAACTTATTT+TGG | 0.274568 | 8_2:+68540012 | Msa1264910:three_prime_UTR |
| ATAGAATATAATAACCTATA+CGG | 0.309711 | 8_2:+68539896 | Msa1264910:three_prime_UTR |
| CAACCAACAAGCTGATGATT+TGG | 0.322790 | 8_2:+68539371 | Msa1264910:CDS |
| GAAATCCAAATACAACAGTT+TGG | 0.337638 | 8_2:+68537184 | None:intergenic |
| AGATGTGTGTTTGAGGAATA+TGG | 0.344846 | 8_2:-68539419 | None:intergenic |
| ATTTGGAAAATTTGAACAAA+AGG | 0.378564 | 8_2:+68539388 | Msa1264910:CDS |
| TCTCCTCAATCCTCTGGCTC+TGG | 0.390207 | 8_2:+68537329 | Msa1264910:CDS |
| TTGAAGTTGTCCGACAAGTT+TGG | 0.396601 | 8_2:-68539497 | None:intergenic |
| TTTCCAAATCATCAGCTTGT+TGG | 0.398691 | 8_2:-68539374 | None:intergenic |
| TAAGGAGTATCTCAAATCTC+AGG | 0.410718 | 8_2:+68537503 | Msa1264910:CDS |
| CTTCTTTCTCCTCAATCCTC+TGG | 0.415811 | 8_2:+68537323 | Msa1264910:CDS |
| TTTGAAACCTTTGAAGTTGT+TGG | 0.421383 | 8_2:-68537363 | None:intergenic |
| ATAAGGAAAGATGTTTCAAC+TGG | 0.421549 | 8_2:+68539327 | Msa1264910:intron |
| AGTTTACAATACAAATTTGT+CGG | 0.426331 | 8_2:-68540004 | None:intergenic |
| CGATCAGAGATGTGTGTTTG+AGG | 0.434499 | 8_2:-68539426 | None:intergenic |
| GAAAGTGGAAGCTCAATAAC+AGG | 0.437471 | 8_2:-68537540 | None:intergenic |
| TTGAAACCTTTGAAGTTGTT+GGG | 0.441400 | 8_2:-68537362 | None:intergenic |
| TGATGAGAGCTCATAGTTGA+TGG | 0.447746 | 8_2:+68539848 | Msa1264910:CDS |
| CCATCACCCAACAACTTCAA+AGG | 0.455131 | 8_2:+68537356 | Msa1264910:CDS |
| TAGAATATAATAACCTATAC+GGG | 0.458221 | 8_2:+68539897 | Msa1264910:three_prime_UTR |
| CCTTTGAAGTTGTTGGGTGA+TGG | 0.474376 | 8_2:-68537356 | None:intergenic |
| CATCTCTGATCGCGTTACTC+AGG | 0.475344 | 8_2:+68539437 | Msa1264910:CDS |
| CCTAAAACAACACCCCGTAT+AGG | 0.488150 | 8_2:-68539910 | None:intergenic |
| AACCTATAAAAGAGAGGCAC+TGG | 0.490418 | 8_2:+68537478 | Msa1264910:CDS |
| TCGCGTTACTCAGGGACAAA+AGG | 0.514346 | 8_2:+68539446 | Msa1264910:CDS |
| ACACCGTGTACCAAACTTGT+CGG | 0.523677 | 8_2:+68539487 | Msa1264910:CDS |
| TACTCAGGGACAAAAGGAAA+AGG | 0.531170 | 8_2:+68539452 | Msa1264910:CDS |
| CTCTCATCAGCTGTGCGTTG+AGG | 0.535770 | 8_2:-68539834 | None:intergenic |
| AAACCAGAGCCAGAGGATTG+AGG | 0.537153 | 8_2:-68537332 | None:intergenic |
| TACCTACCTTGAGTTGAAAG+TGG | 0.539797 | 8_2:-68537555 | None:intergenic |
| ATCTCTGATCGCGTTACTCA+GGG | 0.556344 | 8_2:+68539438 | Msa1264910:CDS |
| GAGCTTCCACTTTCAACTCA+AGG | 0.587387 | 8_2:+68537549 | Msa1264910:CDS |
| AAGGAGTATCTCAAATCTCA+GGG | 0.605928 | 8_2:+68537504 | Msa1264910:CDS |
| GCGCAGCGGAAAGAAACCAT+TGG | 0.621480 | 8_2:+68537250 | Msa1264910:CDS |
| GAGGATTGAGGAGAAAGAAG+AGG | 0.630650 | 8_2:-68537320 | None:intergenic |
| TGATGGAAAACCAGAGCCAG+AGG | 0.649979 | 8_2:-68537339 | None:intergenic |
| TGTCCGACAAGTTTGGTACA+CGG | 0.684798 | 8_2:-68539490 | None:intergenic |
| AAACCAATTAATAAGCGCAG+CGG | 0.695563 | 8_2:+68537236 | Msa1264910:CDS |
| AGAATATAATAACCTATACG+GGG | 0.782218 | 8_2:+68539898 | Msa1264910:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTGTATAATCATTTATTAAT+TGG | + | chr8_2:68537734-68537753 | Msa1264910:intron | 15.0% |
| !!! | TATAATTTTCAATGTCATAT+AGG | - | chr8_2:68538015-68538034 | None:intergenic | 15.0% |
| !!! | TATAATTTTCAATGTCATAT+AGG | - | chr8_2:68538015-68538034 | None:intergenic | 15.0% |
| !! | AAAATTAGATTCAATGTTAA+TGG | + | chr8_2:68539608-68539627 | Msa1264910:intron | 15.0% |
| !!! | TAATTAAGAATTATTTTGGA+TGG | + | chr8_2:68539770-68539789 | Msa1264910:intron | 15.0% |
| !! | ATAGAATATAATAACCTATA+CGG | + | chr8_2:68539896-68539915 | Msa1264910:three_prime_UTR | 15.0% |
| !!! | TTTGTATTGTAAACTTATTT+TGG | + | chr8_2:68540012-68540031 | Msa1264910:three_prime_UTR | 15.0% |
| !!! | TTCTACTTTAATTGTTGTTA+TGG | + | chr8_2:68537600-68537619 | Msa1264910:intron | 20.0% |
| !!! | TTTAATTGTTGTTATGGATA+TGG | + | chr8_2:68537606-68537625 | Msa1264910:intron | 20.0% |
| !!! | AGAGACAATTTTAAAAGAAA+TGG | + | chr8_2:68537769-68537788 | Msa1264910:intron | 20.0% |
| !!! | TTTAATTTACTCGTTCATAT+TGG | - | chr8_2:68537929-68537948 | None:intergenic | 20.0% |
| !!! | CTATATACACTAAATCTTTT+GGG | - | chr8_2:68537992-68538011 | None:intergenic | 20.0% |
| !!! | TTTTATGTTTCTTCTCAAAT+AGG | - | chr8_2:68538173-68538192 | None:intergenic | 20.0% |
| !!! | CTATATACACTAAATCTTTT+GGG | - | chr8_2:68537992-68538011 | None:intergenic | 20.0% |
| !!! | TTTTATGTTTCTTCTCAAAT+AGG | - | chr8_2:68538173-68538192 | None:intergenic | 20.0% |
| !!! | TTTTATGTTTCTTCTCAAAT+AGG | - | chr8_2:68538173-68538192 | None:intergenic | 20.0% |
| !!! | TTTTATGTTTCTTCTCAAAT+AGG | - | chr8_2:68538173-68538192 | None:intergenic | 20.0% |
| !!! | TGAATTGTTGTTATTAGAAA+TGG | + | chr8_2:68538909-68538928 | Msa1264910:intron | 20.0% |
| !! | ATTAGCAGAAATGAATAATT+AGG | - | chr8_2:68539278-68539297 | None:intergenic | 20.0% |
| !! | ATTTGGAAAATTTGAACAAA+AGG | + | chr8_2:68539388-68539407 | Msa1264910:CDS | 20.0% |
| !! | TAGAATATAATAACCTATAC+GGG | + | chr8_2:68539897-68539916 | Msa1264910:three_prime_UTR | 20.0% |
| !! | AGTTTACAATACAAATTTGT+CGG | - | chr8_2:68540007-68540026 | None:intergenic | 20.0% |
| !!! | TGTTTTGAACTTGTTGTTTT+TGG | - | chr8_2:68537214-68537233 | None:intergenic | 25.0% |
| ! | AATTGAAAAAGAAGCAATGA+AGG | - | chr8_2:68537417-68537436 | None:intergenic | 25.0% |
| !!! | TTCATTGCTTCTTTTTCAAT+TGG | + | chr8_2:68537416-68537435 | Msa1264910:intron | 25.0% |
| !!! | TCATTGCTTCTTTTTCAATT+GGG | + | chr8_2:68537417-68537436 | Msa1264910:intron | 25.0% |
| !!! | TAATTTGTTTATGATCACAG+TGG | + | chr8_2:68537443-68537462 | Msa1264910:intron | 25.0% |
| ! | TGAAAAAACCTATAAAAGAG+AGG | + | chr8_2:68537472-68537491 | Msa1264910:CDS | 25.0% |
| ! | TAAAGATTATGTTAGCATTG+AGG | + | chr8_2:68537691-68537710 | Msa1264910:intron | 25.0% |
| ! | CATTTATTAATTGGATGCTA+AGG | + | chr8_2:68537743-68537762 | Msa1264910:intron | 25.0% |
| !!! | GACAATTTTAAAAGAAATGG+TGG | + | chr8_2:68537772-68537791 | Msa1264910:intron | 25.0% |
| ! | AAAAGTTGAATCATTGAGTA+AGG | + | chr8_2:68537961-68537980 | Msa1264910:intron | 25.0% |
| !! | GCTATATACACTAAATCTTT+TGG | - | chr8_2:68537993-68538012 | None:intergenic | 25.0% |
| !! | ATTTTACTGATACTATGTTG+TGG | + | chr8_2:68538084-68538103 | Msa1264910:intron | 25.0% |
| ! | GATGATAAATTGAAATGTGA+AGG | + | chr8_2:68538207-68538226 | Msa1264910:intron | 25.0% |
| ! | AAAAGTTGAATCATTGAGTA+AGG | + | chr8_2:68537961-68537980 | Msa1264910:intron | 25.0% |
| !! | GCTATATACACTAAATCTTT+TGG | - | chr8_2:68537993-68538012 | None:intergenic | 25.0% |
| !! | ATTTTACTGATACTATGTTG+TGG | + | chr8_2:68538084-68538103 | Msa1264910:intron | 25.0% |
| !! | CATGTTGTTGTTATTAGAAA+TGG | + | chr8_2:68538641-68538660 | Msa1264910:intron | 25.0% |
| !! | ATTGTTGTTATTAGAAATGG+TGG | + | chr8_2:68538912-68538931 | Msa1264910:intron | 25.0% |
| !! | TGACAATTTGTTTATAAGTG+GGG | - | chr8_2:68538718-68538737 | None:intergenic | 25.0% |
| !! | CTGACAATTTGTTTATAAGT+GGG | - | chr8_2:68538719-68538738 | None:intergenic | 25.0% |
| !! | TCTGACAATTTGTTTATAAG+TGG | - | chr8_2:68538988-68539007 | None:intergenic | 25.0% |
| !! | TGACAATTTGTTTATAAGTG+GGG | - | chr8_2:68538718-68538737 | None:intergenic | 25.0% |
| !! | CTGACAATTTGTTTATAAGT+GGG | - | chr8_2:68538719-68538738 | None:intergenic | 25.0% |
| ! | AGAATATAATAACCTATACG+GGG | + | chr8_2:68539898-68539917 | Msa1264910:three_prime_UTR | 25.0% |
| !! | TATCATCTTTGTCTTTTGAT+AGG | + | chr8_2:68539972-68539991 | Msa1264910:three_prime_UTR | 25.0% |
| !! | TTGAAACCTTTGAAGTTGTT+GGG | - | chr8_2:68537365-68537384 | None:intergenic | 30.0% |
| !! | TTTGAAACCTTTGAAGTTGT+TGG | - | chr8_2:68537366-68537385 | None:intergenic | 30.0% |
| ! | TTATGTTAGCATTGAGGATT+TGG | + | chr8_2:68537697-68537716 | Msa1264910:intron | 30.0% |
| TACCAATATGCTAGAAAAGA+GGG | - | chr8_2:68537863-68537882 | None:intergenic | 30.0% | |
| ! | GTTGTTGTTATTAGAAATGG+TGG | + | chr8_2:68538644-68538663 | Msa1264910:intron | 30.0% |
| ! | TTGTTATTAGAAATGGTGGT+TGG | + | chr8_2:68538648-68538667 | Msa1264910:intron | 30.0% |
| TGTTATTAGAAATGGTGGTT+GGG | + | chr8_2:68538649-68538668 | Msa1264910:intron | 30.0% | |
| ! | GACAATTTGTTTATAAGTGG+AGG | - | chr8_2:68538717-68538736 | None:intergenic | 30.0% |
| ! | CCTGACAATTTGTTTATAAG+TGG | - | chr8_2:68538720-68538739 | None:intergenic | 30.0% |
| CCACTTATAAACAAATTGTC+AGG | + | chr8_2:68538717-68538736 | Msa1264910:intron | 30.0% | |
| ! | TTGTTATTAGAAATGGTGGT+TGG | + | chr8_2:68538648-68538667 | Msa1264910:intron | 30.0% |
| TGTTATTAGAAATGGTGGTT+GGG | + | chr8_2:68538649-68538668 | Msa1264910:intron | 30.0% | |
| ! | GACAATTTGTTTATAAGTGG+GGG | - | chr8_2:68538717-68538736 | None:intergenic | 30.0% |
| ACATCTGTGAACATAAATGA+CGG | + | chr8_2:68539062-68539081 | Msa1264910:intron | 30.0% | |
| TGTTATCAGGTTTCTGTTAT+CGG | - | chr8_2:68539093-68539112 | None:intergenic | 30.0% | |
| CTCTGATACCATATTAGAAA+TGG | + | chr8_2:68539138-68539157 | Msa1264910:intron | 30.0% | |
| TGATACCATATTAGAAATGG+TGG | + | chr8_2:68539141-68539160 | Msa1264910:intron | 30.0% | |
| ! | GACAATTTGTTTATAAGTGG+GGG | - | chr8_2:68538717-68538736 | None:intergenic | 30.0% |
| ! | CCTGACAATTTGTTTATAAG+TGG | - | chr8_2:68538720-68538739 | None:intergenic | 30.0% |
| CCACTTATAAACAAATTGTC+AGG | + | chr8_2:68538717-68538736 | Msa1264910:intron | 30.0% | |
| CATCTTTCCTTATCATTTCT+TGG | - | chr8_2:68539320-68539339 | None:intergenic | 30.0% | |
| ATAAGGAAAGATGTTTCAAC+TGG | + | chr8_2:68539327-68539346 | Msa1264910:intron | 30.0% | |
| ATGGTAGACACAATATACTA+TGG | + | chr8_2:68539627-68539646 | Msa1264910:intron | 30.0% | |
| !!! | AGATTTTTTTGTCCTTCTGA+TGG | + | chr8_2:68539658-68539677 | Msa1264910:intron | 30.0% |
| ! | AGGAAACTTGATCATTTTGA+TGG | + | chr8_2:68539696-68539715 | Msa1264910:intron | 30.0% |
| TACTTCTATATATATGCTGC+AGG | + | chr8_2:68539802-68539821 | Msa1264910:intron | 30.0% | |
| !!! | CATAGTTGATGGAATCATTT+TGG | + | chr8_2:68539859-68539878 | Msa1264910:exon | 30.0% |
| AAACCAATTAATAAGCGCAG+CGG | + | chr8_2:68537236-68537255 | Msa1264910:CDS | 35.0% | |
| ! | ACCATTGGTGAAGAAGTTTT+TGG | + | chr8_2:68537265-68537284 | Msa1264910:CDS | 35.0% |
| TCCAAAAACTTCTTCACCAA+TGG | - | chr8_2:68537269-68537288 | None:intergenic | 35.0% | |
| TTTGTTTATGATCACAGTGG+TGG | + | chr8_2:68537446-68537465 | Msa1264910:intron | 35.0% | |
| !! | TAAGGAGTATCTCAAATCTC+AGG | + | chr8_2:68537503-68537522 | Msa1264910:CDS | 35.0% |
| !! | AAGGAGTATCTCAAATCTCA+GGG | + | chr8_2:68537504-68537523 | Msa1264910:CDS | 35.0% |
| ! | AGCATTGAGGATTTGGAATT+AGG | + | chr8_2:68537704-68537723 | Msa1264910:intron | 35.0% |
| ! | GAGGATTTGGAATTAGGAAA+AGG | + | chr8_2:68537710-68537729 | Msa1264910:intron | 35.0% |
| !! | AACCCTCTTTTCTAGCATAT+TGG | + | chr8_2:68537858-68537877 | Msa1264910:intron | 35.0% |
| CTACCAATATGCTAGAAAAG+AGG | - | chr8_2:68537864-68537883 | None:intergenic | 35.0% | |
| !! | GCATATTGGTAGCTTTATGT+TGG | + | chr8_2:68537872-68537891 | Msa1264910:intron | 35.0% |
| ACTCGTTCATATTGGACTAT+TGG | - | chr8_2:68537921-68537940 | None:intergenic | 35.0% | |
| TTACTGATACTATGTTGTGG+AGG | + | chr8_2:68538087-68538106 | Msa1264910:intron | 35.0% | |
| TTACTGATACTATGTTGTGG+AGG | + | chr8_2:68538087-68538106 | Msa1264910:intron | 35.0% | |
| ATGTGTTAAGAGTCACACAT+CGG | - | chr8_2:68539022-68539041 | None:intergenic | 35.0% | |
| CATCTGTGAACATAAATGAC+GGG | + | chr8_2:68539063-68539082 | Msa1264910:intron | 35.0% | |
| GTTATCAGGTTTCTGTTATC+GGG | - | chr8_2:68539092-68539111 | None:intergenic | 35.0% | |
| GATAACAGAAACCTGATAAC+AGG | + | chr8_2:68539092-68539111 | Msa1264910:intron | 35.0% | |
| ACCATATTAGAAATGGTGGT+TGG | + | chr8_2:68539145-68539164 | Msa1264910:intron | 35.0% | |
| CCATATTAGAAATGGTGGTT+GGG | + | chr8_2:68539146-68539165 | Msa1264910:intron | 35.0% | |
| TTTCCAAATCATCAGCTTGT+TGG | - | chr8_2:68539377-68539396 | None:intergenic | 35.0% | |
| AGATGTGTGTTTGAGGAATA+TGG | - | chr8_2:68539422-68539441 | None:intergenic | 35.0% | |
| ! | TTCCAAGTTGACTTAGCATA+AGG | + | chr8_2:68539730-68539749 | Msa1264910:intron | 35.0% |
| TTCCTTATGCTAAGTCAACT+TGG | - | chr8_2:68539735-68539754 | None:intergenic | 35.0% | |
| TTTCCGCTGCGCTTATTAAT+TGG | - | chr8_2:68537242-68537261 | None:intergenic | 40.0% | |
| ! | AACCTATAAAAGAGAGGCAC+TGG | + | chr8_2:68537478-68537497 | Msa1264910:CDS | 40.0% |
| ! | AACCAGTGCCTCTCTTTTAT+AGG | - | chr8_2:68537483-68537502 | None:intergenic | 40.0% |
| !! | AAAAGAGAGGCACTGGTTTA+AGG | + | chr8_2:68537485-68537504 | Msa1264910:CDS | 40.0% |
| GAAAGTGGAAGCTCAATAAC+AGG | - | chr8_2:68537543-68537562 | None:intergenic | 40.0% | |
| TTCCACTTTCAACTCAAGGT+AGG | + | chr8_2:68537553-68537572 | Msa1264910:intron | 40.0% | |
| !! | TACCTACCTTGAGTTGAAAG+TGG | - | chr8_2:68537558-68537577 | None:intergenic | 40.0% |
| TAGCTGCTGAATTTGTGTCA+TGG | + | chr8_2:68537660-68537679 | Msa1264910:intron | 40.0% | |
| GTGAGACAAGGTAACAATGT+TGG | - | chr8_2:68538053-68538072 | None:intergenic | 40.0% | |
| TGTTACCTTGTCTCACTTCT+TGG | + | chr8_2:68538057-68538076 | Msa1264910:intron | 40.0% | |
| TCATACCAAGAAGTGAGACA+AGG | - | chr8_2:68538065-68538084 | None:intergenic | 40.0% | |
| GTGAGACAAGGTAACAATGT+TGG | - | chr8_2:68538053-68538072 | None:intergenic | 40.0% | |
| TGTTACCTTGTCTCACTTCT+TGG | + | chr8_2:68538057-68538076 | Msa1264910:intron | 40.0% | |
| TCATACCAAGAAGTGAGACA+AGG | - | chr8_2:68538065-68538084 | None:intergenic | 40.0% | |
| CGTGAACATAAATGAAACCG+TGG | + | chr8_2:68538804-68538823 | Msa1264910:intron | 40.0% | |
| ! | TTAAGAGTCACACATCGGTT+AGG | - | chr8_2:68539017-68539036 | None:intergenic | 40.0% |
| AACAGAAACCTGATAACAGG+TGG | + | chr8_2:68539095-68539114 | Msa1264910:intron | 40.0% | |
| CCCAACCACCATTTCTAATA+TGG | - | chr8_2:68538652-68538671 | None:intergenic | 40.0% | |
| AACTGTTAAGAGTCCCACAT+CGG | - | chr8_2:68539251-68539270 | None:intergenic | 40.0% | |
| ! | CTAATTTGCAGAACCTTTGC+AGG | + | chr8_2:68539293-68539312 | Msa1264910:intron | 40.0% |
| ATCATTTCTTGGTCCTGCAA+AGG | - | chr8_2:68539309-68539328 | None:intergenic | 40.0% | |
| TGCAGGACCAAGAAATGATA+AGG | + | chr8_2:68539310-68539329 | Msa1264910:intron | 40.0% | |
| CAACCAACAAGCTGATGATT+TGG | + | chr8_2:68539371-68539390 | Msa1264910:CDS | 40.0% | |
| TACTCAGGGACAAAAGGAAA+AGG | + | chr8_2:68539452-68539471 | Msa1264910:CDS | 40.0% | |
| TTGAAGTTGTCCGACAAGTT+TGG | - | chr8_2:68539500-68539519 | None:intergenic | 40.0% | |
| !! | TAGTCTTGTCTTCCATCAGA+AGG | - | chr8_2:68539673-68539692 | None:intergenic | 40.0% |
| GACTTAGCATAAGGAATCTG+AGG | + | chr8_2:68539739-68539758 | Msa1264910:intron | 40.0% | |
| TGATGAGAGCTCATAGTTGA+TGG | + | chr8_2:68539848-68539867 | Msa1264910:CDS | 40.0% | |
| GAGGATTGAGGAGAAAGAAG+AGG | - | chr8_2:68537323-68537342 | None:intergenic | 45.0% | |
| CTTCTTTCTCCTCAATCCTC+TGG | + | chr8_2:68537323-68537342 | Msa1264910:CDS | 45.0% | |
| !! | CCTTTGAAGTTGTTGGGTGA+TGG | - | chr8_2:68537359-68537378 | None:intergenic | 45.0% |
| CCATCACCCAACAACTTCAA+AGG | + | chr8_2:68537356-68537375 | Msa1264910:CDS | 45.0% | |
| GAGCTTCCACTTTCAACTCA+AGG | + | chr8_2:68537549-68537568 | Msa1264910:CDS | 45.0% | |
| ! | TTGTGGAGGCATATAAACCG+TGG | + | chr8_2:68538101-68538120 | Msa1264910:intron | 45.0% |
| ! | TTGTGGAGGCATATAAACCG+TGG | + | chr8_2:68538101-68538120 | Msa1264910:intron | 45.0% |
| CTAACACAACCCCACAAAAC+CGG | + | chr8_2:68538673-68538692 | Msa1264910:intron | 45.0% | |
| ! | TTAAGAGTCCCACATCGGTT+AGG | - | chr8_2:68538749-68538768 | None:intergenic | 45.0% |
| GTGTGTTAAGAGTCCCACAT+CGG | - | chr8_2:68538754-68538773 | None:intergenic | 45.0% | |
| ATGTGTAATCCTGAGCGTGA+GGG | - | chr8_2:68538778-68538797 | None:intergenic | 45.0% | |
| CTAACACAACCCCACAAAAC+CGG | + | chr8_2:68538673-68538692 | Msa1264910:intron | 45.0% | |
| ATGTGTAATCCTGAGCGTGA+GGG | - | chr8_2:68538778-68538797 | None:intergenic | 45.0% | |
| GAGCCTCTTCACGATTCTTT+GGG | - | chr8_2:68539121-68539140 | None:intergenic | 45.0% | |
| AGAGCCTCTTCACGATTCTT+TGG | - | chr8_2:68539122-68539141 | None:intergenic | 45.0% | |
| CTAACACAACCCCACAAAAC+CGG | + | chr8_2:68538673-68538692 | Msa1264910:intron | 45.0% | |
| ! | TTAAGAGTCCCACATCGGTT+AGG | - | chr8_2:68538749-68538768 | None:intergenic | 45.0% |
| CGATCAGAGATGTGTGTTTG+AGG | - | chr8_2:68539429-68539448 | None:intergenic | 45.0% | |
| ATCTCTGATCGCGTTACTCA+GGG | + | chr8_2:68539438-68539457 | Msa1264910:CDS | 45.0% | |
| ACACCGTGTACCAAACTTGT+CGG | + | chr8_2:68539487-68539506 | Msa1264910:CDS | 45.0% | |
| TGTCCGACAAGTTTGGTACA+CGG | - | chr8_2:68539493-68539512 | None:intergenic | 45.0% | |
| ! | GATGGAAGACAAGACTAGCT+AGG | + | chr8_2:68539676-68539695 | Msa1264910:intron | 45.0% |
| CCTAAAACAACACCCCGTAT+AGG | - | chr8_2:68539913-68539932 | None:intergenic | 45.0% | |
| !!! | CCTATACGGGGTGTTGTTTT+AGG | + | chr8_2:68539910-68539929 | Msa1264910:three_prime_UTR | 45.0% |
| !!! | ATTTTAATTAAGAATTATTT+TGG | + | chr8_2:68539766-68539785 | Msa1264910:intron | 5.0% |
| AAACCAGAGCCAGAGGATTG+AGG | - | chr8_2:68537335-68537354 | None:intergenic | 50.0% | |
| TGATGGAAAACCAGAGCCAG+AGG | - | chr8_2:68537342-68537361 | None:intergenic | 50.0% | |
| CATATAAACCGTGGCGCTCT+TGG | + | chr8_2:68538110-68538129 | Msa1264910:intron | 50.0% | |
| !! | ATCTATCACCAAGAGCGCCA+CGG | - | chr8_2:68538121-68538140 | None:intergenic | 50.0% |
| CATATAAACCGTGGCGCTCT+TGG | + | chr8_2:68538110-68538129 | Msa1264910:intron | 50.0% | |
| !! | ATCTATCACCAAGAGCGCCA+CGG | - | chr8_2:68538121-68538140 | None:intergenic | 50.0% |
| !! | CGGTTTTGTGGGGTTGTGTT+AGG | - | chr8_2:68538675-68538694 | None:intergenic | 50.0% |
| !! | ACCTCACAAGCCGGTTTTGT+GGG | - | chr8_2:68538686-68538705 | None:intergenic | 50.0% |
| TGTGTAATCCTGAGCGTGAG+GGG | - | chr8_2:68538777-68538796 | None:intergenic | 50.0% | |
| GATGTGTAATCCTGAGCGTG+AGG | - | chr8_2:68538779-68538798 | None:intergenic | 50.0% | |
| AAATGAAACCGTGGCGCTCT+TGG | + | chr8_2:68538813-68538832 | Msa1264910:intron | 50.0% | |
| !! | ATCTATCACCAAGAGCGCCA+CGG | - | chr8_2:68538121-68538140 | None:intergenic | 50.0% |
| !! | CGGTTTTGTGGGGTTGTGTT+AGG | - | chr8_2:68538675-68538694 | None:intergenic | 50.0% |
| !! | ACCTCACAAGCCGGTTTTGT+GGG | - | chr8_2:68538686-68538705 | None:intergenic | 50.0% |
| ! | GTCACACATCGGTTAGGAGT+TGG | - | chr8_2:68539011-68539030 | None:intergenic | 50.0% |
| TGTGTAATCCTGAGCGTGAG+GGG | - | chr8_2:68538777-68538796 | None:intergenic | 50.0% | |
| GATGTGTAATCCTGAGCGTG+AGG | - | chr8_2:68538779-68538798 | None:intergenic | 50.0% | |
| TCTTTGGGCCACCTGTTATC+AGG | - | chr8_2:68539106-68539125 | None:intergenic | 50.0% | |
| TGGCCCAAAGAATCGTGAAG+AGG | + | chr8_2:68539115-68539134 | Msa1264910:intron | 50.0% | |
| !! | CGGTTTTGTGGGGTTGTGTT+AGG | - | chr8_2:68538675-68538694 | None:intergenic | 50.0% |
| !! | ACCTCACAAGCCGGTTTTGT+GGG | - | chr8_2:68538686-68538705 | None:intergenic | 50.0% |
| CATCTCTGATCGCGTTACTC+AGG | + | chr8_2:68539437-68539456 | Msa1264910:CDS | 50.0% | |
| TCGCGTTACTCAGGGACAAA+AGG | + | chr8_2:68539446-68539465 | Msa1264910:CDS | 50.0% | |
| GCGCAGCGGAAAGAAACCAT+TGG | + | chr8_2:68537250-68537269 | Msa1264910:CDS | 55.0% | |
| ! | TCTCCTCAATCCTCTGGCTC+TGG | + | chr8_2:68537329-68537348 | Msa1264910:CDS | 55.0% |
| !! | CCTCACAAGCCGGTTTTGTG+GGG | - | chr8_2:68538685-68538704 | None:intergenic | 55.0% |
| !! | CACCTCACAAGCCGGTTTTG+TGG | - | chr8_2:68538687-68538706 | None:intergenic | 55.0% |
| !! | CAAAACCGGCTTGTGAGGTG+AGG | + | chr8_2:68538687-68538706 | Msa1264910:intron | 55.0% |
| GCAATCCTCACCTCACAAGC+CGG | - | chr8_2:68538695-68538714 | None:intergenic | 55.0% | |
| AGGCCAACTCCTAACCGATG+TGG | + | chr8_2:68538737-68538756 | Msa1264910:intron | 55.0% | |
| GGCCAACTCCTAACCGATGT+GGG | + | chr8_2:68538738-68538757 | Msa1264910:intron | 55.0% | |
| ! | GTCCCACATCGGTTAGGAGT+TGG | - | chr8_2:68538743-68538762 | None:intergenic | 55.0% |
| GTGTAATCCTGAGCGTGAGG+GGG | - | chr8_2:68538776-68538795 | None:intergenic | 55.0% | |
| !! | CCTCACAAGCCGGTTTTGTG+GGG | - | chr8_2:68538685-68538704 | None:intergenic | 55.0% |
| !! | CACCTCACAAGCCGGTTTTG+TGG | - | chr8_2:68538687-68538706 | None:intergenic | 55.0% |
| !! | CAAAACCGGCTTGTGAGGTG+AGG | + | chr8_2:68538687-68538706 | Msa1264910:intron | 55.0% |
| GCAATCCTCACCTCACAAGC+CGG | - | chr8_2:68538695-68538714 | None:intergenic | 55.0% | |
| TAACACATCCCCTCACGCTC+AGG | + | chr8_2:68539034-68539053 | Msa1264910:intron | 55.0% | |
| !! | CCTCACAAGCCGGTTTTGTG+GGG | - | chr8_2:68538685-68538704 | None:intergenic | 55.0% |
| !! | CACCTCACAAGCCGGTTTTG+TGG | - | chr8_2:68538687-68538706 | None:intergenic | 55.0% |
| !! | CAAAACCGGCTTGTGAGGTG+AGG | + | chr8_2:68538687-68538706 | Msa1264910:intron | 55.0% |
| GCAATCCTCACCTCACAAGC+CGG | - | chr8_2:68538695-68538714 | None:intergenic | 55.0% | |
| AGGCCAACTCCTAACCGATG+TGG | + | chr8_2:68538737-68538756 | Msa1264910:intron | 55.0% | |
| GGCCAACTCCTAACCGATGT+GGG | + | chr8_2:68538738-68538757 | Msa1264910:intron | 55.0% | |
| ! | GTCCCACATCGGTTAGGAGT+TGG | - | chr8_2:68538743-68538762 | None:intergenic | 55.0% |
| CTCTCATCAGCTGTGCGTTG+AGG | - | chr8_2:68539837-68539856 | None:intergenic | 55.0% | |
| !! | CCCCACAAAACCGGCTTGTG+AGG | + | chr8_2:68538682-68538701 | Msa1264910:intron | 60.0% |
| TAACACACCCCCTCACGCTC+AGG | + | chr8_2:68538766-68538785 | Msa1264910:intron | 60.0% | |
| !! | CCCCACAAAACCGGCTTGTG+AGG | + | chr8_2:68538682-68538701 | Msa1264910:intron | 60.0% |
| !! | CCCCACAAAACCGGCTTGTG+AGG | + | chr8_2:68538682-68538701 | Msa1264910:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 68537191 | 68540061 | 68537191 | ID=Msa1264910;Name=Msa1264910 |
| chr8_2 | mRNA | 68537191 | 68540061 | 68537191 | ID=Msa1264910-mRNA-1;Parent=Msa1264910;Name=Msa1264910-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0.66|0.75|1|0.33|0.75|4|194|175 |
| chr8_2 | exon | 68537191 | 68537377 | 68537191 | ID=Msa1264910-mRNA-1:exon:22708;Parent=Msa1264910-mRNA-1 |
| chr8_2 | exon | 68537463 | 68537570 | 68537463 | ID=Msa1264910-mRNA-1:exon:22709;Parent=Msa1264910-mRNA-1 |
| chr8_2 | exon | 68539337 | 68539525 | 68539337 | ID=Msa1264910-mRNA-1:exon:22710;Parent=Msa1264910-mRNA-1 |
| chr8_2 | exon | 68539824 | 68540061 | 68539824 | ID=Msa1264910-mRNA-1:exon:22711;Parent=Msa1264910-mRNA-1 |
| chr8_2 | CDS | 68537191 | 68537377 | 68537191 | ID=Msa1264910-mRNA-1:cds;Parent=Msa1264910-mRNA-1 |
| chr8_2 | CDS | 68537463 | 68537570 | 68537463 | ID=Msa1264910-mRNA-1:cds;Parent=Msa1264910-mRNA-1 |
| chr8_2 | CDS | 68539337 | 68539525 | 68539337 | ID=Msa1264910-mRNA-1:cds;Parent=Msa1264910-mRNA-1 |
| chr8_2 | CDS | 68539824 | 68539867 | 68539824 | ID=Msa1264910-mRNA-1:cds;Parent=Msa1264910-mRNA-1 |
| chr8_2 | three_prime_UTR | 68539868 | 68540061 | 68539868 | ID=Msa1264910-mRNA-1:three_prime_utr;Parent=Msa1264910-mRNA-1 |
| Gene Sequence |
| Protein sequence |
