AlfalfaGEDB | Msa1264930

M. sativa cultivar zhongmu-4 / Msa1264930

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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TFs/TRs:

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0322360	Msa1264930	0.836142	1.112539e-56	-8.615850e-47
Msa0768370	Msa1264930	0.808908	2.457965e-50	-8.615850e-47
Msa0807370	Msa1264930	0.809677	1.681625e-50	-8.615850e-47
Msa0899430	Msa1264930	0.802366	5.804476e-49	-8.615850e-47
Msa1205020	Msa1264930	0.802097	6.592901e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Find 22 sgRNAs with CRISPR-Local

Find 383 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAAAGTGTCACATGTT+TGG	0.412909	8_2:-68570923	None:intergenic
AAAGTGTCACATGTTTGGTC+TGG	0.457612	8_2:-68570918	None:intergenic
ACATGTAACACATCGATCGC+AGG	0.598904	8_2:-68571022	None:intergenic
AGAGGGAGAGGGAGAGGGAG+AGG	0.340398	8_2:-68570946	None:intergenic
AGTGAGAGAGGGAGAGGGAG+AGG	0.422848	8_2:-68570952	None:intergenic
ATAGATAGTATTCTTCTCCA+AGG	0.618229	8_2:+68573461	Msa1264930:intron
ATCGCAGGAAGGAGTTGCAA+TGG	0.606905	8_2:-68571007	None:intergenic
ATGCTCGTTGTAGTGAGAGA+GGG	0.626331	8_2:-68570963	None:intergenic
CATCAAGAACGCACGCTACA+AGG	0.477870	8_2:+68571119	Msa1264930:CDS
CGATCGATGTGTTACATGTT+GGG	0.463229	8_2:+68571026	Msa1264930:exon

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTTATTCGCGTATTCATATA+TGG	-	chr8_2:68571368-68571387	None:intergenic	30.0%
TATGAATACGCGAATAACTT+TGG	+	chr8_2:68571370-68571389	Msa1264930:intron	30.0%
ATGAATACGCGAATAACTTT+GGG	+	chr8_2:68571371-68571390	Msa1264930:intron	30.0%
TTCCATCTCAAACGTAATTA+CGG	-	chr8_2:68571771-68571790	None:intergenic	30.0%
TACGCATATTATAACTGTGT+AGG	+	chr8_2:68571892-68571911	Msa1264930:intron	30.0%
TTAAACATCTTCCTATGTTG+GGG	+	chr8_2:68571981-68572000	Msa1264930:intron	30.0%
AATTCTATGACCTGTACAAA+TGG	-	chr8_2:68572045-68572064	None:intergenic	30.0%
GATAATTATGTGAAATGCAC+TGG	+	chr8_2:68572873-68572892	Msa1264930:intron	30.0%
CTACATGACATAAAACTACA+TGG	-	chr8_2:68573326-68573345	None:intergenic	30.0%
GGTACCATTATCTAATTGTT+TGG	+	chr8_2:68573362-68573381	Msa1264930:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_2	gene	68570896	68578902	68570896	ID=Msa1264930;Name=Msa1264930
chr8_2	mRNA	68570896	68578902	68570896	ID=Msa1264930-mRNA-1;Parent=Msa1264930;Name=Msa1264930-mRNA-1;_AED=0.39;_eAED=0.39;_QI=136\|0\|0.33\|0.66\|0\|0\|3\|0\|69
chr8_2	exon	68570896	68571140	68570896	ID=Msa1264930-mRNA-1:exon:22712;Parent=Msa1264930-mRNA-1
chr8_2	exon	68573465	68573558	68573465	ID=Msa1264930-mRNA-1:exon:22713;Parent=Msa1264930-mRNA-1
chr8_2	exon	68578899	68578902	68578899	ID=Msa1264930-mRNA-1:exon:22714;Parent=Msa1264930-mRNA-1
chr8_2	five_prime_UTR	68570896	68571031	68570896	ID=Msa1264930-mRNA-1:five_prime_utr;Parent=Msa1264930-mRNA-1
chr8_2	CDS	68571032	68571140	68571032	ID=Msa1264930-mRNA-1:cds;Parent=Msa1264930-mRNA-1
chr8_2	CDS	68573465	68573558	68573465	ID=Msa1264930-mRNA-1:cds;Parent=Msa1264930-mRNA-1
chr8_2	CDS	68578899	68578902	68578899	ID=Msa1264930-mRNA-1:cds;Parent=Msa1264930-mRNA-1

Gene Sequence	>Msa1264930 ATGTGTTACATGTTGGGTTCACTGAGCTTTGCGATCGATCTCATCATCTCAATTCCTCTACTCTTTCCTTTCATTGATTTCCAATATCATCAAGAACGCACGCTACAAGATAGTATTCTTCTCCAAGGAAGTTTAGCTGATCAAGAGCAAAATGATTATTCTACTATCTCATTGGATGCATCTCTAAAGGAGAGTTTGAACACAAAA
Protein sequence	>Msa1264930 MCYMLGSLSFAIDLIISIPLLFPFIDFQYHQERTLQDSILLQGSLADQEQNDYSTISLDASLKESLNTK