Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1267880 | AES80101.1 | 99.138 | 232 | 2 | 0 | 1 | 232 | 1 | 232 | 6.76e-169 | 486 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1267880 | sp|P37225|MAON_SOLTU | 85.897 | 234 | 31 | 1 | 1 | 232 | 1 | 234 | 6.19e-149 | 431 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1267880 | G7L3I1 | 99.138 | 232 | 2 | 0 | 1 | 232 | 1 | 232 | 3.23e-169 | 486 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1066460 | Msa1267880 | 0.856650 | 2.786829e-62 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1267880 | MtrunA17_Chr7g0247001 | 99.138 | 232 | 2 | 0 | 1 | 232 | 1 | 232 | 7.73e-172 | 486 |
| Msa1267880 | MtrunA17_Chr8g0349861 | 86.383 | 235 | 29 | 1 | 1 | 232 | 1 | 235 | 3.19e-151 | 434 |
| Msa1267880 | MtrunA17_Chr8g0337031 | 71.041 | 221 | 63 | 1 | 13 | 232 | 33 | 253 | 1.38e-111 | 333 |
| Msa1267880 | MtrunA17_Chr3g0140501 | 47.291 | 203 | 97 | 1 | 30 | 232 | 39 | 231 | 7.20e-63 | 206 |
| Msa1267880 | MtrunA17_Chr8g0389961 | 47.783 | 203 | 96 | 1 | 30 | 232 | 52 | 244 | 1.87e-62 | 205 |
| Msa1267880 | MtrunA17_Chr8g0340671 | 46.798 | 203 | 98 | 1 | 30 | 232 | 49 | 241 | 8.65e-61 | 201 |
| Msa1267880 | MtrunA17_Chr2g0331051 | 46.305 | 203 | 99 | 1 | 30 | 232 | 102 | 294 | 5.96e-59 | 197 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1267880 | AT4G00570.1 | 84.932 | 219 | 33 | 0 | 14 | 232 | 23 | 241 | 6.46e-140 | 405 |
| Msa1267880 | AT2G13560.1 | 67.699 | 226 | 72 | 1 | 6 | 230 | 21 | 246 | 1.33e-110 | 331 |
| Msa1267880 | AT2G19900.1 | 46.305 | 203 | 99 | 1 | 30 | 232 | 42 | 234 | 2.53e-61 | 202 |
| Msa1267880 | AT5G25880.3 | 46.305 | 203 | 99 | 1 | 30 | 232 | 49 | 241 | 2.82e-60 | 198 |
| Msa1267880 | AT5G25880.2 | 46.305 | 203 | 99 | 1 | 30 | 232 | 49 | 241 | 1.15e-59 | 197 |
| Msa1267880 | AT5G25880.1 | 46.305 | 203 | 99 | 1 | 30 | 232 | 49 | 241 | 2.54e-59 | 197 |
| Msa1267880 | AT1G79750.1 | 45.813 | 203 | 100 | 1 | 30 | 232 | 107 | 299 | 1.27e-58 | 196 |
| Msa1267880 | AT5G11670.1 | 46.305 | 203 | 99 | 1 | 30 | 232 | 49 | 241 | 1.51e-58 | 195 |
| Msa1267880 | AT2G19900.2 | 54.135 | 133 | 61 | 0 | 100 | 232 | 3 | 135 | 1.85e-50 | 171 |
Find 70 sgRNAs with CRISPR-Local
Find 168 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTCGTATCATTTCATTTC+AGG | 0.152277 | 8_3:+66983 | Msa1267880:CDS |
| AAACGATCCCTTTCAGTTAA+AGG | 0.185284 | 8_3:-66939 | None:intergenic |
| TCTCCCCTGCAACGTGAAAA+AGG | 0.275993 | 8_3:+65974 | Msa1267880:five_prime_UTR |
| TCATGATCCTTGGTTCAATA+AGG | 0.276524 | 8_3:+66123 | Msa1267880:CDS |
| CATCATCTCTCCTTTATCTT+TGG | 0.282849 | 8_3:-67508 | None:intergenic |
| GGTGCGAAATCTCTTTGATT+TGG | 0.316699 | 8_3:+65995 | Msa1267880:five_prime_UTR |
| ACAGATGGTAGTCGTATTCT+TGG | 0.335760 | 8_3:+68344 | Msa1267880:CDS |
| CTGATATTCTTCATGATCCT+TGG | 0.337382 | 8_3:+66113 | Msa1267880:CDS |
| TCTATTTAAGATCCTCCATT+TGG | 0.349893 | 8_3:-67242 | None:intergenic |
| TTTAACTGAAAGGGATCGTT+TGG | 0.353746 | 8_3:+66941 | Msa1267880:CDS |
| ACTGTAGGAGTGTAAATTAT+TGG | 0.368268 | 8_3:-67423 | None:intergenic |
| AAAACTATTGTGGGTTGTAT+AGG | 0.378512 | 8_3:+67460 | Msa1267880:CDS |
| TTATAACTGGCCAGCTCCTC+AGG | 0.382199 | 8_3:+67539 | Msa1267880:CDS |
| AAAGAAACACATACTCTTTG+TGG | 0.393803 | 8_3:-68446 | None:intergenic |
| TAAGATCCTCCATTTGGATA+AGG | 0.396615 | 8_3:-67236 | None:intergenic |
| CGGATTTCCTTTAACTGAAA+GGG | 0.420020 | 8_3:+66932 | Msa1267880:CDS |
| TGATGTCGATGATTTATAAC+TGG | 0.420109 | 8_3:+67526 | Msa1267880:CDS |
| GGCGATACCTGCTCCGTGTA+TGG | 0.423282 | 8_3:+66075 | Msa1267880:CDS |
| CAAGGCATTGGAATACCTAT+AGG | 0.427935 | 8_3:+68386 | Msa1267880:CDS |
| GGTAGTCGTATTCTTGGGTT+AGG | 0.436308 | 8_3:+68350 | Msa1267880:CDS |
| TTAACTGAAAGGGATCGTTT+GGG | 0.440854 | 8_3:+66942 | Msa1267880:CDS |
| AAATTGTTTCCTTATCCAAA+TGG | 0.443400 | 8_3:+67227 | Msa1267880:CDS |
| TTAGGTGACCTTGGAGTTCA+AGG | 0.453306 | 8_3:+68368 | Msa1267880:CDS |
| GACCTTGGAGTTCAAGGCAT+TGG | 0.459300 | 8_3:+68374 | Msa1267880:CDS |
| CAGATGGTAGTCGTATTCTT+GGG | 0.460040 | 8_3:+68345 | Msa1267880:CDS |
| AAGAAACACATACTCTTTGT+GGG | 0.471922 | 8_3:-68445 | None:intergenic |
| CCTTTCAGTTAAAGGAAATC+CGG | 0.475100 | 8_3:-66931 | None:intergenic |
| TACTCTTTGTGGGTTGATAC+CGG | 0.476232 | 8_3:-68435 | None:intergenic |
| AGTGAGCTCATATAGATCAT+TGG | 0.482376 | 8_3:+67177 | Msa1267880:intron |
| CTTCCGATCATGTTGGATGT+TGG | 0.491010 | 8_3:+68616 | Msa1267880:CDS |
| GAGCGAGAATTTATAGAATG+AGG | 0.491888 | 8_3:-65918 | None:intergenic |
| CCGGATTTCCTTTAACTGAA+AGG | 0.492100 | 8_3:+66931 | Msa1267880:CDS |
| ATTCTCGAAATGTAGGATAC+CGG | 0.492439 | 8_3:+66912 | Msa1267880:intron |
| CAATTCATTACCTGAGGAGC+TGG | 0.495881 | 8_3:-67549 | None:intergenic |
| TAATTTACACTCCTACAGTT+GGG | 0.496930 | 8_3:+67427 | Msa1267880:CDS |
| ATAATTTACACTCCTACAGT+TGG | 0.500644 | 8_3:+67426 | Msa1267880:CDS |
| ATTCTTGGGTTAGGTGACCT+TGG | 0.506001 | 8_3:+68359 | Msa1267880:CDS |
| AGGGATCGTTTGGGGCTTCG+AGG | 0.509582 | 8_3:+66951 | Msa1267880:CDS |
| CTCTTTGATTTGGAAGAATG+TGG | 0.512520 | 8_3:+66005 | Msa1267880:exon |
| TAGTGTGTCAAAACTATTGT+GGG | 0.517809 | 8_3:+67451 | Msa1267880:CDS |
| GTGGAAGGTGACGCGTTTGG+CGG | 0.521186 | 8_3:+66024 | Msa1267880:CDS |
| AATGTGGAAGGTGACGCGTT+TGG | 0.534896 | 8_3:+66021 | Msa1267880:exon |
| GTGTTGTGTGTGAGAGAGAG+AGG | 0.552368 | 8_3:-65854 | None:intergenic |
| ATGAAATGATACGAGGAGGA+AGG | 0.570448 | 8_3:-66977 | None:intergenic |
| CACGTTGCAGGGGAGAATTG+AGG | 0.572723 | 8_3:-65967 | None:intergenic |
| GTTCCAACATCCAACATGAT+CGG | 0.573217 | 8_3:-68619 | None:intergenic |
| TTATGAACCATACACGGAGC+AGG | 0.578199 | 8_3:-66082 | None:intergenic |
| TTGTTTCCTTATCCAAATGG+AGG | 0.585354 | 8_3:+67230 | Msa1267880:CDS |
| GACATGATTGTCTTGACAGA+TGG | 0.585645 | 8_3:+68329 | Msa1267880:CDS |
| GCGATCGCGGTTGTTCTCGA+CGG | 0.600148 | 8_3:+66054 | Msa1267880:CDS |
| TGGCGGCATCATCGCGATCG+CGG | 0.604902 | 8_3:+66041 | Msa1267880:CDS |
| TAACTGAAAGGGATCGTTTG+GGG | 0.609536 | 8_3:+66943 | Msa1267880:CDS |
| TCTTAAATAGACTACATGAC+AGG | 0.611160 | 8_3:+67254 | Msa1267880:CDS |
| GATATGTATGTTGCAGCTGC+CGG | 0.611656 | 8_3:+68416 | Msa1267880:CDS |
| TGACACACTAACCCAACTGT+AGG | 0.613154 | 8_3:-67438 | None:intergenic |
| TTGATTTGGAAGAATGTGGA+AGG | 0.621516 | 8_3:+66009 | Msa1267880:exon |
| AAATGATACGAGGAGGAAGG+AGG | 0.624874 | 8_3:-66974 | None:intergenic |
| TTAGTGTGTCAAAACTATTG+TGG | 0.625148 | 8_3:+67450 | Msa1267880:CDS |
| TTCCAATGCCTTGAACTCCA+AGG | 0.626893 | 8_3:-68376 | None:intergenic |
| AGATGAACCTTATTGAACCA+AGG | 0.635290 | 8_3:-66130 | None:intergenic |
| CCACGTTTATGAACCATACA+CGG | 0.649265 | 8_3:-66088 | None:intergenic |
| AGAATGAATTCAACTCACAA+AGG | 0.650567 | 8_3:-68669 | None:intergenic |
| GCAGATACTTCCGATCATGT+TGG | 0.657392 | 8_3:+68609 | Msa1267880:intron |
| CCGTGTATGGTTCATAAACG+TGG | 0.657511 | 8_3:+66088 | Msa1267880:CDS |
| TGAAATGAAATGATACGAGG+AGG | 0.663233 | 8_3:-66981 | None:intergenic |
| TCATTGGAGAAGAATACCCA+TGG | 0.676024 | 8_3:+67193 | Msa1267880:CDS |
| TTGCAGGGGAGAATTGAGGT+AGG | 0.681828 | 8_3:-65963 | None:intergenic |
| GGGTTGTATAGGCGTCCACG+TGG | 0.704315 | 8_3:+67471 | Msa1267880:CDS |
| GCACTAAAATACATTCCACG+TGG | 0.711731 | 8_3:-67486 | None:intergenic |
| TCCTGAAATGAAATGATACG+AGG | 0.716494 | 8_3:-66984 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATGAAAATAAATTCTGATA+TGG | + | chr8_3:66406-66425 | Msa1267880:intron | 15.0% |
| !!! | AAATGTAGTAGTTATTTTGA+AGG | + | chr8_3:66304-66323 | Msa1267880:intron | 20.0% |
| !!! | ATCAGAATTTATTTTCATAG+TGG | - | chr8_3:66405-66424 | None:intergenic | 20.0% |
| !! | ATCACAAAATCATCAAATTT+AGG | - | chr8_3:66641-66660 | None:intergenic | 20.0% |
| !!! | TTTTTTAATTCTCGAAATGT+AGG | + | chr8_3:66905-66924 | Msa1267880:intron | 20.0% |
| !!! | TTATTTTATTAGTGGAATTG+AGG | + | chr8_3:67840-67859 | Msa1267880:intron | 20.0% |
| !! | GTAAATATAGGAAAATATAG+AGG | + | chr8_3:67980-67999 | Msa1267880:intron | 20.0% |
| !!! | TGTTATTCATTTGTTAGAAT+TGG | + | chr8_3:68278-68297 | Msa1267880:intron | 20.0% |
| !! | AAAATAAAATACACAAGTTG+AGG | - | chr8_3:68506-68525 | None:intergenic | 20.0% |
| !!! | CAACTTGTGTATTTTATTTT+AGG | + | chr8_3:68506-68525 | Msa1267880:intron | 20.0% |
| !!! | GGTATGTTTTCATTTATAAT+TGG | + | chr8_3:68527-68546 | Msa1267880:intron | 20.0% |
| !! | TTTCATTTATAATTGGAACT+TGG | + | chr8_3:68534-68553 | Msa1267880:intron | 20.0% |
| !! | ATATGGAAAAAGTGATTTTC+TGG | + | chr8_3:66423-66442 | Msa1267880:intron | 25.0% |
| !!! | GCTTATTTGAAACAGTTTTT+AGG | + | chr8_3:66463-66482 | Msa1267880:intron | 25.0% |
| ! | AATGAACCTTAACTAATTTG+AGG | - | chr8_3:66764-66783 | None:intergenic | 25.0% |
| ! | CAGTATTAAATCAAAACCAA+TGG | - | chr8_3:66875-66894 | None:intergenic | 25.0% |
| ! | AAATTGTTTCCTTATCCAAA+TGG | + | chr8_3:67227-67246 | Msa1267880:CDS | 25.0% |
| ! | TGGTAACATTTATTTCCAAA+TGG | + | chr8_3:67339-67358 | Msa1267880:intron | 25.0% |
| !!! | TATTTTAGTGCCAAAGATAA+AGG | + | chr8_3:67498-67517 | Msa1267880:CDS | 25.0% |
| ! | CTTTCAGTTCTTAATTGAAA+TGG | + | chr8_3:67600-67619 | Msa1267880:intron | 25.0% |
| !!! | GTAAAATTTTAACTTCCTGA+TGG | + | chr8_3:67746-67765 | Msa1267880:intron | 25.0% |
| ! | AATATAGGAAAATATAGAGG+AGG | + | chr8_3:67983-68002 | Msa1267880:intron | 25.0% |
| ! | ACAAATGAATAACAAAAGTC+AGG | - | chr8_3:68272-68291 | None:intergenic | 25.0% |
| !! | TACATATCAAGTTTTCCTAT+AGG | - | chr8_3:68404-68423 | None:intergenic | 25.0% |
| ! | TTTATAATTGGAACTTGGTA+TGG | + | chr8_3:68539-68558 | Msa1267880:intron | 25.0% |
| ! | TTCTTGATTACGTTGATGAA+TGG | + | chr8_3:66253-66272 | Msa1267880:intron | 30.0% |
| ACGAAAAAAGCTGTATCAAA+TGG | + | chr8_3:66555-66574 | Msa1267880:intron | 30.0% | |
| CGAAAAAAGCTGTATCAAAT+GGG | + | chr8_3:66556-66575 | Msa1267880:intron | 30.0% | |
| GAAAAAAGCTGTATCAAATG+GGG | + | chr8_3:66557-66576 | Msa1267880:intron | 30.0% | |
| ATGAATGAGAAAATAGACAC+TGG | + | chr8_3:66703-66722 | Msa1267880:intron | 30.0% | |
| TGAATGAGAAAATAGACACT+GGG | + | chr8_3:66704-66723 | Msa1267880:intron | 30.0% | |
| AACTCACCTCAAATTAGTTA+AGG | + | chr8_3:66755-66774 | Msa1267880:intron | 30.0% | |
| ! | TTAAGGTTCATTGTCATTTC+TGG | + | chr8_3:66772-66791 | Msa1267880:intron | 30.0% |
| ACTATATGCATCTATGTTCT+TGG | + | chr8_3:67050-67069 | Msa1267880:intron | 30.0% | |
| ! | AATTTTATCTGACTGACCAT+GGG | - | chr8_3:67212-67231 | None:intergenic | 30.0% |
| ! | TCTATTTAAGATCCTCCATT+TGG | - | chr8_3:67245-67264 | None:intergenic | 30.0% |
| TCTTAAATAGACTACATGAC+AGG | + | chr8_3:67254-67273 | Msa1267880:CDS | 30.0% | |
| GGTTGTTATGTGACAAAATA+TGG | + | chr8_3:67319-67338 | Msa1267880:intron | 30.0% | |
| GTAACAACATAAGAACCATT+TGG | - | chr8_3:67357-67376 | None:intergenic | 30.0% | |
| ! | ACTGTAGGAGTGTAAATTAT+TGG | - | chr8_3:67426-67445 | None:intergenic | 30.0% |
| ATAATTTACACTCCTACAGT+TGG | + | chr8_3:67426-67445 | Msa1267880:CDS | 30.0% | |
| TAATTTACACTCCTACAGTT+GGG | + | chr8_3:67427-67446 | Msa1267880:CDS | 30.0% | |
| TTAGTGTGTCAAAACTATTG+TGG | + | chr8_3:67450-67469 | Msa1267880:CDS | 30.0% | |
| TAGTGTGTCAAAACTATTGT+GGG | + | chr8_3:67451-67470 | Msa1267880:CDS | 30.0% | |
| ! | AAAACTATTGTGGGTTGTAT+AGG | + | chr8_3:67460-67479 | Msa1267880:CDS | 30.0% |
| TGATGTCGATGATTTATAAC+TGG | + | chr8_3:67526-67545 | Msa1267880:CDS | 30.0% | |
| ! | TAGTATTGTTCAAGTTTGTG+CGG | + | chr8_3:67673-67692 | Msa1267880:intron | 30.0% |
| TAACTGGATCCATAACAAAA+AGG | - | chr8_3:67803-67822 | None:intergenic | 30.0% | |
| ACACCTATCATGCATAAAAT+TGG | + | chr8_3:68058-68077 | Msa1267880:intron | 30.0% | |
| TAGAACTTCTTCAACGATTT+AGG | + | chr8_3:68099-68118 | Msa1267880:intron | 30.0% | |
| ! | ATCTTTTTATGTGACTGCAT+TGG | + | chr8_3:68155-68174 | Msa1267880:intron | 30.0% |
| AAGAAACACATACTCTTTGT+GGG | - | chr8_3:68448-68467 | None:intergenic | 30.0% | |
| AAAGAAACACATACTCTTTG+TGG | - | chr8_3:68449-68468 | None:intergenic | 30.0% | |
| GAGGAGAAATTAAAGATACA+TGG | - | chr8_3:68487-68506 | None:intergenic | 30.0% | |
| AGAATGAATTCAACTCACAA+AGG | - | chr8_3:68672-68691 | None:intergenic | 30.0% | |
| GAGCGAGAATTTATAGAATG+AGG | - | chr8_3:65921-65940 | None:intergenic | 35.0% | |
| !! | CTCTTTGATTTGGAAGAATG+TGG | + | chr8_3:66005-66024 | Msa1267880:exon | 35.0% |
| !! | TTGATTTGGAAGAATGTGGA+AGG | + | chr8_3:66009-66028 | Msa1267880:exon | 35.0% |
| CTGATATTCTTCATGATCCT+TGG | + | chr8_3:66113-66132 | Msa1267880:CDS | 35.0% | |
| TCATGATCCTTGGTTCAATA+AGG | + | chr8_3:66123-66142 | Msa1267880:CDS | 35.0% | |
| AGATGAACCTTATTGAACCA+AGG | - | chr8_3:66133-66152 | None:intergenic | 35.0% | |
| ! | CTAATTTGAGGTGAGTTGAA+TGG | - | chr8_3:66752-66771 | None:intergenic | 35.0% |
| TATCTAAATCCTCAGTATCC+AGG | - | chr8_3:66799-66818 | None:intergenic | 35.0% | |
| CAGAAACTTGAAATTCTACG+CGG | - | chr8_3:66838-66857 | None:intergenic | 35.0% | |
| CAAAACCAATGGTTAAGAAC+AGG | - | chr8_3:66864-66883 | None:intergenic | 35.0% | |
| ATTCTCGAAATGTAGGATAC+CGG | + | chr8_3:66912-66931 | Msa1267880:intron | 35.0% | |
| CCTTTCAGTTAAAGGAAATC+CGG | - | chr8_3:66934-66953 | None:intergenic | 35.0% | |
| CGGATTTCCTTTAACTGAAA+GGG | + | chr8_3:66932-66951 | Msa1267880:CDS | 35.0% | |
| AAACGATCCCTTTCAGTTAA+AGG | - | chr8_3:66942-66961 | None:intergenic | 35.0% | |
| TTTAACTGAAAGGGATCGTT+TGG | + | chr8_3:66941-66960 | Msa1267880:CDS | 35.0% | |
| TTAACTGAAAGGGATCGTTT+GGG | + | chr8_3:66942-66961 | Msa1267880:CDS | 35.0% | |
| TGAAATGAAATGATACGAGG+AGG | - | chr8_3:66984-67003 | None:intergenic | 35.0% | |
| TCCTCGTATCATTTCATTTC+AGG | + | chr8_3:66983-67002 | Msa1267880:CDS | 35.0% | |
| TCCTGAAATGAAATGATACG+AGG | - | chr8_3:66987-67006 | None:intergenic | 35.0% | |
| AATGATCTATATGAGCTCAC+TGG | - | chr8_3:67178-67197 | None:intergenic | 35.0% | |
| AGTGAGCTCATATAGATCAT+TGG | + | chr8_3:67177-67196 | Msa1267880:intron | 35.0% | |
| ! | CAATTTTATCTGACTGACCA+TGG | - | chr8_3:67213-67232 | None:intergenic | 35.0% |
| TTGTTTCCTTATCCAAATGG+AGG | + | chr8_3:67230-67249 | Msa1267880:CDS | 35.0% | |
| TAAGATCCTCCATTTGGATA+AGG | - | chr8_3:67239-67258 | None:intergenic | 35.0% | |
| ! | GTGAGTCTGATGATGAAATT+AGG | + | chr8_3:67298-67317 | Msa1267880:intron | 35.0% |
| TGTTACCTTTCATTCTCTTC+AGG | + | chr8_3:67371-67390 | Msa1267880:intron | 35.0% | |
| CATCATCTCTCCTTTATCTT+TGG | - | chr8_3:67511-67530 | None:intergenic | 35.0% | |
| CAAGATCAATTCATTACCTG+AGG | - | chr8_3:67558-67577 | None:intergenic | 35.0% | |
| CTCAGGTAATGAATTGATCT+TGG | + | chr8_3:67556-67575 | Msa1267880:intron | 35.0% | |
| ! | CTTTTCATTACTCCCTTCTA+CGG | + | chr8_3:67635-67654 | Msa1267880:intron | 35.0% |
| ! | TTTTCATTACTCCCTTCTAC+GGG | + | chr8_3:67636-67655 | Msa1267880:intron | 35.0% |
| ! | AGTATTGTTCAAGTTTGTGC+GGG | + | chr8_3:67674-67693 | Msa1267880:intron | 35.0% |
| TGAATTACACTGTATCCATC+AGG | - | chr8_3:67764-67783 | None:intergenic | 35.0% | |
| ACAGTGTAATTCAAATGAGC+AGG | + | chr8_3:67771-67790 | Msa1267880:intron | 35.0% | |
| ! | AGGATGTTGCCTTTTTGTTA+TGG | + | chr8_3:67791-67810 | Msa1267880:intron | 35.0% |
| TAATATACCGACCTAGAGTA+AGG | + | chr8_3:67927-67946 | Msa1267880:intron | 35.0% | |
| TGCATGTAGGTAAGAAAAGA+GGG | + | chr8_3:67950-67969 | Msa1267880:intron | 35.0% | |
| ! | GTGCCAATTTTATGCATGAT+AGG | - | chr8_3:68064-68083 | None:intergenic | 35.0% |
| TAACAATGCATCCAGTAACT+GGG | - | chr8_3:68188-68207 | None:intergenic | 35.0% | |
| ATAACAATGCATCCAGTAAC+TGG | - | chr8_3:68189-68208 | None:intergenic | 35.0% | |
| TTATCATGTTTCCCTGTTTC+AGG | + | chr8_3:68304-68323 | Msa1267880:intron | 35.0% | |
| AATCATGTCTACCTGAAACA+GGG | - | chr8_3:68318-68337 | None:intergenic | 35.0% | |
| GGTGCGAAATCTCTTTGATT+TGG | + | chr8_3:65995-66014 | Msa1267880:five_prime_UTR | 40.0% | |
| CCACGTTTATGAACCATACA+CGG | - | chr8_3:66091-66110 | None:intergenic | 40.0% | |
| !! | TTCATTGTCATTTCTGGTCC+TGG | + | chr8_3:66778-66797 | Msa1267880:intron | 40.0% |
| TGATGCCTGTTCTTAACCAT+TGG | + | chr8_3:66856-66875 | Msa1267880:intron | 40.0% | |
| CCGGATTTCCTTTAACTGAA+AGG | + | chr8_3:66931-66950 | Msa1267880:CDS | 40.0% | |
| TAACTGAAAGGGATCGTTTG+GGG | + | chr8_3:66943-66962 | Msa1267880:CDS | 40.0% | |
| ATGAAATGATACGAGGAGGA+AGG | - | chr8_3:66980-66999 | None:intergenic | 40.0% | |
| TCATTGGAGAAGAATACCCA+TGG | + | chr8_3:67193-67212 | Msa1267880:CDS | 40.0% | |
| AAGTGCCTGAAGAGAATGAA+AGG | - | chr8_3:67379-67398 | None:intergenic | 40.0% | |
| GCACTAAAATACATTCCACG+TGG | - | chr8_3:67489-67508 | None:intergenic | 40.0% | |
| AAATATTTGGCGCAGCTAAC+TGG | - | chr8_3:67819-67838 | None:intergenic | 40.0% | |
| GTGCATGTAGGTAAGAAAAG+AGG | + | chr8_3:67949-67968 | Msa1267880:intron | 40.0% | |
| GCATGTAGGTAAGAAAAGAG+GGG | + | chr8_3:67951-67970 | Msa1267880:intron | 40.0% | |
| TTGGTAAATGTCCCAGTTAC+TGG | + | chr8_3:68174-68193 | Msa1267880:intron | 40.0% | |
| ! | TATATGCCTTGTTGCAACGT+AGG | + | chr8_3:68214-68233 | Msa1267880:intron | 40.0% |
| AAACTTCCTACGTTGCAACA+AGG | - | chr8_3:68223-68242 | None:intergenic | 40.0% | |
| CAATCATGTCTACCTGAAAC+AGG | - | chr8_3:68319-68338 | None:intergenic | 40.0% | |
| GACATGATTGTCTTGACAGA+TGG | + | chr8_3:68329-68348 | Msa1267880:CDS | 40.0% | |
| ACAGATGGTAGTCGTATTCT+TGG | + | chr8_3:68344-68363 | Msa1267880:CDS | 40.0% | |
| CAGATGGTAGTCGTATTCTT+GGG | + | chr8_3:68345-68364 | Msa1267880:CDS | 40.0% | |
| !! | CAAGGCATTGGAATACCTAT+AGG | + | chr8_3:68386-68405 | Msa1267880:CDS | 40.0% |
| !! | TACTCTTTGTGGGTTGATAC+CGG | - | chr8_3:68438-68457 | None:intergenic | 40.0% |
| GATACATGGAGAGTGAGTAA+GGG | - | chr8_3:68473-68492 | None:intergenic | 40.0% | |
| AGATACATGGAGAGTGAGTA+AGG | - | chr8_3:68474-68493 | None:intergenic | 40.0% | |
| CATTAGTTAACGAGAGTTGC+TGG | - | chr8_3:68565-68584 | None:intergenic | 40.0% | |
| !!! | GTATGCTTTTTTCCCAACTG+TGG | + | chr8_3:68587-68606 | Msa1267880:intron | 40.0% |
| GTTCCAACATCCAACATGAT+CGG | - | chr8_3:68622-68641 | None:intergenic | 40.0% | |
| TTATGAACCATACACGGAGC+AGG | - | chr8_3:66085-66104 | None:intergenic | 45.0% | |
| CCGTGTATGGTTCATAAACG+TGG | + | chr8_3:66088-66107 | Msa1267880:CDS | 45.0% | |
| !! | ATTTCTGGTCCTGGATACTG+AGG | + | chr8_3:66787-66806 | Msa1267880:intron | 45.0% |
| AAATGATACGAGGAGGAAGG+AGG | - | chr8_3:66977-66996 | None:intergenic | 45.0% | |
| TGACACACTAACCCAACTGT+AGG | - | chr8_3:67441-67460 | None:intergenic | 45.0% | |
| CAATTCATTACCTGAGGAGC+TGG | - | chr8_3:67552-67571 | None:intergenic | 45.0% | |
| ! | TTGTTCAAGTTTGTGCGGGT+TGG | + | chr8_3:67678-67697 | Msa1267880:intron | 45.0% |
| ACATGCACCTTACTCTAGGT+CGG | - | chr8_3:67937-67956 | None:intergenic | 45.0% | |
| ACCTAGAGTAAGGTGCATGT+AGG | + | chr8_3:67937-67956 | Msa1267880:intron | 45.0% | |
| ACCTACATGCACCTTACTCT+AGG | - | chr8_3:67941-67960 | None:intergenic | 45.0% | |
| TGTAGGTAAGAAAAGAGGGG+AGG | + | chr8_3:67954-67973 | Msa1267880:intron | 45.0% | |
| GAGGGGAGGTAGGTAAATAT+AGG | + | chr8_3:67968-67987 | Msa1267880:intron | 45.0% | |
| GTTGCAACGTAGGAAGTTTC+TGG | + | chr8_3:68224-68243 | Msa1267880:intron | 45.0% | |
| GGTAGTCGTATTCTTGGGTT+AGG | + | chr8_3:68350-68369 | Msa1267880:CDS | 45.0% | |
| ! | ATTCTTGGGTTAGGTGACCT+TGG | + | chr8_3:68359-68378 | Msa1267880:CDS | 45.0% |
| TTAGGTGACCTTGGAGTTCA+AGG | + | chr8_3:68368-68387 | Msa1267880:CDS | 45.0% | |
| TTCCAATGCCTTGAACTCCA+AGG | - | chr8_3:68379-68398 | None:intergenic | 45.0% | |
| GATATGTATGTTGCAGCTGC+CGG | + | chr8_3:68416-68435 | Msa1267880:CDS | 45.0% | |
| GCAGATACTTCCGATCATGT+TGG | + | chr8_3:68609-68628 | Msa1267880:intron | 45.0% | |
| CTTCCGATCATGTTGGATGT+TGG | + | chr8_3:68616-68635 | Msa1267880:CDS | 45.0% | |
| !! | ATTAAAATAATAATATGTTA+TGG | - | chr8_3:67152-67171 | None:intergenic | 5.0% |
| !! | CTAATAAAATAAAAAATATT+TGG | - | chr8_3:67832-67851 | None:intergenic | 5.0% |
| !!! | AATATTTTTTATTTTATTAG+TGG | + | chr8_3:67832-67851 | Msa1267880:intron | 5.0% |
| TTGCAGGGGAGAATTGAGGT+AGG | - | chr8_3:65966-65985 | None:intergenic | 50.0% | |
| TCTCCCCTGCAACGTGAAAA+AGG | + | chr8_3:65974-65993 | Msa1267880:five_prime_UTR | 50.0% | |
| !! | GCACCTTTTTCACGTTGCAG+GGG | - | chr8_3:65980-65999 | None:intergenic | 50.0% |
| !! | CGCACCTTTTTCACGTTGCA+GGG | - | chr8_3:65981-66000 | None:intergenic | 50.0% |
| !! | TCGCACCTTTTTCACGTTGC+AGG | - | chr8_3:65982-66001 | None:intergenic | 50.0% |
| AATGTGGAAGGTGACGCGTT+TGG | + | chr8_3:66021-66040 | Msa1267880:exon | 50.0% | |
| TTATAACTGGCCAGCTCCTC+AGG | + | chr8_3:67539-67558 | Msa1267880:CDS | 50.0% | |
| AGATGTTCCAGCCCGTAGAA+GGG | - | chr8_3:67650-67669 | None:intergenic | 50.0% | |
| TAGATGTTCCAGCCCGTAGA+AGG | - | chr8_3:67651-67670 | None:intergenic | 50.0% | |
| GGTAAGAAAAGAGGGGAGGT+AGG | + | chr8_3:67958-67977 | Msa1267880:intron | 50.0% | |
| GACCTTGGAGTTCAAGGCAT+TGG | + | chr8_3:68374-68393 | Msa1267880:CDS | 50.0% | |
| !! | CGGAAGTATCTGCCACAGTT+GGG | - | chr8_3:68602-68621 | None:intergenic | 50.0% |
| !! | TCGGAAGTATCTGCCACAGT+TGG | - | chr8_3:68603-68622 | None:intergenic | 50.0% |
| CACGTTGCAGGGGAGAATTG+AGG | - | chr8_3:65970-65989 | None:intergenic | 55.0% | |
| CATTACTCCCTTCTACGGGC+TGG | + | chr8_3:67640-67659 | Msa1267880:intron | 55.0% | |
| GTGGAAGGTGACGCGTTTGG+CGG | + | chr8_3:66024-66043 | Msa1267880:CDS | 60.0% | |
| GCGATCGCGGTTGTTCTCGA+CGG | + | chr8_3:66054-66073 | Msa1267880:CDS | 60.0% | |
| GGCGATACCTGCTCCGTGTA+TGG | + | chr8_3:66075-66094 | Msa1267880:CDS | 60.0% | |
| ! | AGGGATCGTTTGGGGCTTCG+AGG | + | chr8_3:66951-66970 | Msa1267880:CDS | 60.0% |
| GGGTTGTATAGGCGTCCACG+TGG | + | chr8_3:67471-67490 | Msa1267880:CDS | 60.0% | |
| TGGCGGCATCATCGCGATCG+CGG | + | chr8_3:66041-66060 | Msa1267880:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 65855 | 68722 | 65855 | ID=Msa1267880;Name=Msa1267880 |
| chr8_3 | mRNA | 65855 | 68722 | 65855 | ID=Msa1267880-mRNA-1;Parent=Msa1267880;Name=Msa1267880-mRNA-1;_AED=0.00;_eAED=0.00;_QI=167|1|1|1|1|1|6|26|239 |
| chr8_3 | exon | 65855 | 66144 | 65855 | ID=Msa1267880-mRNA-1:exon:0;Parent=Msa1267880-mRNA-1 |
| chr8_3 | exon | 66927 | 67023 | 66927 | ID=Msa1267880-mRNA-1:exon:1;Parent=Msa1267880-mRNA-1 |
| chr8_3 | exon | 67179 | 67297 | 67179 | ID=Msa1267880-mRNA-1:exon:2;Parent=Msa1267880-mRNA-1 |
| chr8_3 | exon | 67393 | 67560 | 67393 | ID=Msa1267880-mRNA-1:exon:3;Parent=Msa1267880-mRNA-1 |
| chr8_3 | exon | 68326 | 68454 | 68326 | ID=Msa1267880-mRNA-1:exon:4;Parent=Msa1267880-mRNA-1 |
| chr8_3 | exon | 68613 | 68722 | 68613 | ID=Msa1267880-mRNA-1:exon:5;Parent=Msa1267880-mRNA-1 |
| chr8_3 | five_prime_UTR | 65855 | 66021 | 65855 | ID=Msa1267880-mRNA-1:five_prime_utr;Parent=Msa1267880-mRNA-1 |
| chr8_3 | CDS | 66022 | 66144 | 66022 | ID=Msa1267880-mRNA-1:cds;Parent=Msa1267880-mRNA-1 |
| chr8_3 | CDS | 66927 | 67023 | 66927 | ID=Msa1267880-mRNA-1:cds;Parent=Msa1267880-mRNA-1 |
| chr8_3 | CDS | 67179 | 67297 | 67179 | ID=Msa1267880-mRNA-1:cds;Parent=Msa1267880-mRNA-1 |
| chr8_3 | CDS | 67393 | 67560 | 67393 | ID=Msa1267880-mRNA-1:cds;Parent=Msa1267880-mRNA-1 |
| chr8_3 | CDS | 68326 | 68454 | 68326 | ID=Msa1267880-mRNA-1:cds;Parent=Msa1267880-mRNA-1 |
| chr8_3 | CDS | 68613 | 68696 | 68613 | ID=Msa1267880-mRNA-1:cds;Parent=Msa1267880-mRNA-1 |
| chr8_3 | three_prime_UTR | 68697 | 68722 | 68697 | ID=Msa1267880-mRNA-1:three_prime_utr;Parent=Msa1267880-mRNA-1 |
| Gene Sequence |
| Protein sequence |
