AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1268180

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 137 sgRNAs with CRISPR-Local

Find 430 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGGTTTATTGGATGGGATTT+TGG 0.105886 8_3:-1138082 Msa1268180:three_prime_UTR
CCCACTCCAGAATGGATTTA+TGG 0.202566 8_3:-1138303 Msa1268180:CDS
TCCACTCCAGAATGGATTTA+TGG 0.244122 8_3:-1138366 Msa1268180:CDS
GACAAGAAATTCAAAATATA+TGG 0.247963 8_3:+1140003 None:intergenic
GTGGGGCACCAACTCCATTT+TGG 0.253534 8_3:+1138321 None:intergenic
GGTGTGCTCCAACTCCATTC+TGG 0.259749 8_3:+1138189 None:intergenic
TTCTTAACCCTGTCCCGCTT+GGG 0.280196 8_3:-1138844 Msa1268180:CDS
TTCAAAATTTCTATGGTAGA+AGG 0.284797 8_3:+1137972 None:intergenic
TTCTGCGGCGGGGCTACAAC+AGG 0.289333 8_3:+1138401 None:intergenic
AGTGGGCTTCAAACATTTAC+TGG 0.301159 8_3:+1139850 None:intergenic
CTCCCTACCTAAAGAGGTTA+TGG 0.318706 8_3:-1137877 Msa1268180:three_prime_UTR
TATAGGTTTCAAAATTTCTA+TGG 0.319268 8_3:+1137965 None:intergenic
TGAACCTGAAAATGCTCTTC+AGG 0.324144 8_3:-1138531 Msa1268180:CDS
TTTACTGGGCCGTTTGTAAT+AGG 0.327639 8_3:+1139865 None:intergenic
GCACACCAGATTGGATTTCT+TGG 0.330879 8_3:-1138260 Msa1268180:CDS
CCATCATTCACACCATGTTC+TGG 0.334250 8_3:+1138716 None:intergenic
ATCTCTTAGACTGCATGATT+TGG 0.335022 8_3:-1138003 Msa1268180:three_prime_UTR
TGAACCTGAAAATGCTCTTC+AGG 0.341538 8_3:-1138663 Msa1268180:CDS
AACACAATTCAGCAGAGAAT+TGG 0.355594 8_3:+1137840 None:intergenic
GTGGAGCTCCAACTCCATTC+TGG 0.357101 8_3:+1138234 None:intergenic
GTCCCGCTTGGGGCCCCACT+TGG 0.359034 8_3:-1138833 Msa1268180:CDS
GGTATGCCATAAATCCATTC+TGG 0.369902 8_3:+1138360 None:intergenic
GCATAGCCGTGCCGTTCATT+TGG 0.370821 8_3:-1138897 Msa1268180:CDS
GAAGTGCCATAAATCCATTC+TGG 0.377331 8_3:+1138297 None:intergenic
AAAGTCTCCATAACCTCTTT+AGG 0.386188 8_3:+1137870 None:intergenic
AAGGTCAAAAGCTTTATCAT+TGG 0.390597 8_3:+1138967 None:intergenic
TAGAAGGCATGGATTAGTTA+TGG 0.396456 8_3:-1138053 Msa1268180:three_prime_UTR
CTGCAACTCCATTCTGCGGC+GGG 0.396698 8_3:+1138390 None:intergenic
TATCATCTTCCTCTTCAATC+TGG 0.406745 8_3:+1138168 None:intergenic
TTTGGTGGACCGCTACGTTA+TGG 0.410813 8_3:+1138339 None:intergenic
TTTCTTAACCCTGTCCCGCT+TGG 0.414219 8_3:-1138845 Msa1268180:CDS
ACAGGCTCATAAAACCTTCC+TGG 0.414975 8_3:+1138785 None:intergenic
AACGTAGCGGTCCACCAAAA+TGG 0.417752 8_3:-1138335 Msa1268180:CDS
AGGTCAAAAGCTTTATCATT+GGG 0.422823 8_3:+1138968 None:intergenic
GAGCCTGTGCATGGTGTTGA+TGG 0.428054 8_3:-1138770 Msa1268180:CDS
CTTGGTCACCAGAATGGAGT+TGG 0.431574 8_3:-1138242 Msa1268180:CDS
TTCCATCTCCCTACCTAAAG+AGG 0.433146 8_3:-1137883 Msa1268180:three_prime_UTR
TTTGGAAAAGCCTACACCTT+GGG 0.441685 8_3:-1138879 Msa1268180:CDS
AAGAGGTTATGGAGACTTTG+TGG 0.443243 8_3:-1137866 Msa1268180:three_prime_UTR
GGGGCTACAACAGGGGCAAA+CGG 0.443376 8_3:+1138410 None:intergenic
AATTTAACCTGATTGAGTAT+TGG 0.450326 8_3:-1137940 Msa1268180:three_prime_UTR
TGGCGCTGTGGCTGTGAATC+CGG 0.458594 8_3:-1138750 Msa1268180:CDS
ATGGCACTTCAGAATGGAGT+TGG 0.460812 8_3:-1138284 Msa1268180:CDS
TGCCGCTGAGGCTGTGCATC+CGG 0.461278 8_3:-1138486 Msa1268180:CDS
GGATCATTCACACCATGGTC+TGG 0.463468 8_3:+1138452 None:intergenic
CACCAAGTGGGGCCCCAAGC+GGG 0.464393 8_3:+1138831 None:intergenic
ACAGAAACCAATACTCAATC+AGG 0.465174 8_3:+1137933 None:intergenic
GGAGTTGGAGCACACCAGAT+TGG 0.467686 8_3:-1138269 Msa1268180:CDS
TTGGCAAACCAGAATGGAGT+TGG 0.468130 8_3:-1138197 Msa1268180:CDS
GGGCTACAACAGGGGCAAAC+GGG 0.471211 8_3:+1138411 None:intergenic
GGATTTCTTGGTCACCAGAA+TGG 0.474354 8_3:-1138248 Msa1268180:CDS
GAAAATGCTCTTCAGGAAGA+TGG 0.475287 8_3:-1138524 Msa1268180:CDS
AAGATGAAGACGCACCTGTA+TGG 0.476557 8_3:-1139099 Msa1268180:CDS
TGTTCTAGAACGGCAAGAAC+CGG 0.480307 8_3:+1138599 None:intergenic
TGGCGCTGCGGCTATGAATC+CGG 0.480534 8_3:-1138618 Msa1268180:CDS
GTGATCCTAGTTTGATGCTG+TGG 0.481843 8_3:-1138811 Msa1268180:CDS
CCAGAACATGGTGTGAATGA+TGG 0.489113 8_3:-1138716 Msa1268180:CDS
AGTTTGATGCTGTGGGGACC+AGG 0.489419 8_3:-1138803 Msa1268180:CDS
TGTTCTGGAACGGCAAGATC+CGG 0.489720 8_3:+1138731 None:intergenic
TTTGGGTTATTTAGAAGGCA+TGG 0.493812 8_3:-1138064 Msa1268180:three_prime_UTR
CCAAAGATCGTCCCATCAAA+AGG 0.496855 8_3:+1138948 None:intergenic
GTTGTAGCCCCGCCGCAGAA+TGG 0.498686 8_3:-1138398 Msa1268180:CDS
TGATCCTAGTTTGATGCTGT+GGG 0.505942 8_3:-1138810 Msa1268180:CDS
GATGGTTTGCATGGTGATGA+TGG 0.507731 8_3:-1138638 Msa1268180:CDS
GGGAATGTTGTGTACGATGT+TGG 0.509891 8_3:-1138695 Msa1268180:CDS
GCTGCAACTCCATTCTGCGG+CGG 0.513654 8_3:+1138389 None:intergenic
GGATTTATGGCACTTCAGAA+TGG 0.514593 8_3:-1138290 Msa1268180:CDS
CTGCGGCGGGGCTACAACAG+GGG 0.527949 8_3:+1138403 None:intergenic
GGTGACCAAGAAATCCAATC+TGG 0.528712 8_3:+1138255 None:intergenic
CTAGAACATGGTGTGAATGA+TGG 0.528852 8_3:-1138584 Msa1268180:CDS
GTTCTTGCCGTTCTAGAACA+TGG 0.529039 8_3:-1138596 Msa1268180:CDS
CGCACCTGTATGGGATGTTG+AGG 0.529087 8_3:-1139089 Msa1268180:CDS
AGTAGCATTTATCTTGACTT+CGG 0.530567 8_3:+1139965 None:intergenic
TCTCCATAACCTCTTTAGGT+AGG 0.531065 8_3:+1137874 None:intergenic
CCATAAATCCATTCTGGAGT+GGG 0.532094 8_3:+1138303 None:intergenic
CTTGATAAAGAGTGTGGAAG+TGG 0.532127 8_3:+1139832 None:intergenic
CTCCATAACCTCTTTAGGTA+GGG 0.532838 8_3:+1137875 None:intergenic
TCTTAACCCTGTCCCGCTTG+GGG 0.533160 8_3:-1138843 Msa1268180:CDS
GGTCCCCACAGCATCAAACT+AGG 0.533905 8_3:+1138806 None:intergenic
CAGAACATGGTGTGAATGAT+GGG 0.534585 8_3:-1138715 Msa1268180:CDS
GCTCTTGCTGTTCCAGACCA+TGG 0.537454 8_3:-1138464 Msa1268180:CDS
GTGCTTCCCAGAGACAAAAC+CGG 0.544527 8_3:+1139774 None:intergenic
TCTGCGGCGGGGCTACAACA+GGG 0.544696 8_3:+1138402 None:intergenic
AGATGAAGACGCACCTGTAT+GGG 0.547861 8_3:-1139098 Msa1268180:CDS
GTTGGTGCCCCACTCCAGAA+TGG 0.551692 8_3:-1138311 Msa1268180:CDS
CCACAGCTTCCTATTACAAA+CGG 0.552146 8_3:-1139874 Msa1268180:five_prime_UTR
TAGAACATGGTGTGAATGAT+GGG 0.552780 8_3:-1138583 Msa1268180:CDS
TGGTCTGGAACAGCAAGAGC+CGG 0.559968 8_3:+1138467 None:intergenic
AGAAAATTCATGACATCCCA+AGG 0.564589 8_3:+1138863 None:intergenic
GTTGGAGCTCCACTCCAGAA+TGG 0.565043 8_3:-1138224 Msa1268180:CDS
GAAAATGCTCTTCAGGAGGA+TGG 0.566438 8_3:-1138656 Msa1268180:CDS
AACCTCTTTAGGTAGGGAGA+TGG 0.568815 8_3:+1137881 None:intergenic
CTTCAGGAGGATGGTTTGCA+TGG 0.570153 8_3:-1138647 Msa1268180:CDS
GTTGCAGCTCCACTCCAGAA+TGG 0.571558 8_3:-1138374 Msa1268180:CDS
GCGCCATCAACACCATGCAC+AGG 0.572504 8_3:+1138767 None:intergenic
CAACCCTCAACATCCCATAC+AGG 0.572953 8_3:+1139085 None:intergenic
CTTCAGGAAGATGGTTTGCA+TGG 0.576480 8_3:-1138515 Msa1268180:CDS
TGCAACTCCATTCTGCGGCG+GGG 0.579050 8_3:+1138391 None:intergenic
GATCTTGCCGTTCCAGAACA+TGG 0.580778 8_3:-1138728 Msa1268180:CDS
ATCAAACTAGGATCACCAAG+TGG 0.582932 8_3:+1138818 None:intergenic
GGGTTCACAAACTCATCGAA+TGG 0.583297 8_3:+1138431 None:intergenic
GCGGTCCACCAAAATGGAGT+TGG 0.586466 8_3:-1138329 Msa1268180:CDS
GTGGGCTTCAAACATTTACT+GGG 0.590884 8_3:+1139851 None:intergenic
ACAATGAAGAGCATGAGGGT+TGG 0.595073 8_3:-1139057 Msa1268180:CDS
AGAGGAAGATGATAATTGAC+CGG 0.595189 8_3:-1138159 Msa1268180:exon
ATTTGGAAAAGCCTACACCT+TGG 0.595494 8_3:-1138880 Msa1268180:CDS
CTGTATGGGATGTTGAGGGT+TGG 0.599424 8_3:-1139084 Msa1268180:CDS
TCACCAAGTGGGGCCCCAAG+CGG 0.600903 8_3:+1138830 None:intergenic
TGGAGCACACCAGATTGAAG+AGG 0.604001 8_3:-1138177 Msa1268180:CDS
GAGCTACAATGAAGAGCATG+AGG 0.605366 8_3:-1139062 Msa1268180:CDS
GCCATAAATCCATTCTGGAG+TGG 0.608472 8_3:+1138302 None:intergenic
TGATGCTGTGGGGACCAGGA+AGG 0.611850 8_3:-1138799 Msa1268180:CDS
AGCCGGATGCACAGCCTCAG+CGG 0.612271 8_3:+1138484 None:intergenic
ATTCACACCATGTTCTGGAA+CGG 0.626731 8_3:+1138721 None:intergenic
GCCATAAATCCATTCTGGAG+TGG 0.630771 8_3:+1138365 None:intergenic
TCAAACTAGGATCACCAAGT+GGG 0.631709 8_3:+1138819 None:intergenic
ACCTGAAAATGCTCTTCAGG+AGG 0.634962 8_3:-1138660 Msa1268180:CDS
AGCTAACAAATCAGAAACAC+CGG 0.634985 8_3:+1138140 None:intergenic
GCATGGTGTTGATGGCGCTG+TGG 0.637312 8_3:-1138762 Msa1268180:CDS
ATTCACACCATGTTCTAGAA+CGG 0.637637 8_3:+1138589 None:intergenic
TTCATGACATCCCAAGGTGT+AGG 0.644140 8_3:+1138869 None:intergenic
TTGATAAAGAGTGTGGAAGT+GGG 0.645374 8_3:+1139833 None:intergenic
GCATGGTGTTGATGCCGCTG+AGG 0.656155 8_3:-1138498 Msa1268180:CDS
GCACCTGTATGGGATGTTGA+GGG 0.660379 8_3:-1139088 Msa1268180:CDS
CATAAATCCATTCTGGAGTG+GGG 0.661633 8_3:+1138304 None:intergenic
CGAATGGATCATTCACACCA+TGG 0.664066 8_3:+1138447 None:intergenic
GAAATGCATCAAACATACCC+TGG 0.666704 8_3:+1138990 None:intergenic
CCGTTTGTAATAGGAAGCTG+TGG 0.666972 8_3:+1139874 None:intergenic
GGAGCTGCAACTCCATTCTG+CGG 0.670170 8_3:+1138386 None:intergenic
TCTGATCTGAAACTTCCTTG+AGG 0.677539 8_3:-1139736 Msa1268180:intron
TCGTGTCTTGATAAAGAGTG+TGG 0.679036 8_3:+1139826 None:intergenic
GCATGGTGATGATGGCGCTG+CGG 0.688414 8_3:-1138630 Msa1268180:CDS
CAAACTAGGATCACCAAGTG+GGG 0.699078 8_3:+1138820 None:intergenic
AGCTACAATGAAGAGCATGA+GGG 0.708781 8_3:-1139061 Msa1268180:CDS
GATCCTAGTTTGATGCTGTG+GGG 0.720636 8_3:-1138809 Msa1268180:CDS
CTTCCCAGAGACAAAACCGG+CGG 0.723994 8_3:+1139777 None:intergenic
TATGGCATACCATAACGTAG+CGG 0.777640 8_3:-1138348 Msa1268180:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTGTAAAAAGTAATAATTAA+AGG - chr8_3:1137941-1137960 Msa1268180:three_prime_UTR 15.0%
!! GGGTTATTAATATTAATAAT+TGG - chr8_3:1138487-1138506 Msa1268180:CDS 15.0%
!! TAATATTAATAATTGGATTG+TGG - chr8_3:1138494-1138513 Msa1268180:CDS 15.0%
!! AATATTAATAATTGGATTGT+GGG - chr8_3:1138495-1138514 Msa1268180:CDS 15.0%
!! TAATTCTAATATTTCAATGT+TGG - chr8_3:1138590-1138609 Msa1268180:CDS 15.0%
!!! TTTTAATCTTCTAATTTTCT+TGG - chr8_3:1138701-1138720 Msa1268180:CDS 15.0%
!! GTGTAAAAAGTAATAATTAA+AGG - chr8_3:1137941-1137960 Msa1268180:three_prime_UTR 15.0%
!! GGGTTATTAATATTAATAAT+TGG - chr8_3:1138487-1138506 Msa1268180:CDS 15.0%
!! TAATATTAATAATTGGATTG+TGG - chr8_3:1138494-1138513 Msa1268180:CDS 15.0%
!! AATATTAATAATTGGATTGT+GGG - chr8_3:1138495-1138514 Msa1268180:CDS 15.0%
!! TAATTCTAATATTTCAATGT+TGG - chr8_3:1138590-1138609 Msa1268180:CDS 15.0%
!!! TTTTAATCTTCTAATTTTCT+TGG - chr8_3:1138701-1138720 Msa1268180:CDS 15.0%
!! GACAAGAAATTCAAAATATA+TGG + chr8_3:1137844-1137863 None:intergenic 20.0%
!!! TTTTTTGGATTTCACTATTT+GGG - chr8_3:1138194-1138213 Msa1268180:CDS 20.0%
!! CTGTTAGTATTATGAATAAA+TGG - chr8_3:1138409-1138428 Msa1268180:CDS 20.0%
!!! TATTATGAATAAATGGATTG+TGG - chr8_3:1138416-1138435 Msa1268180:CDS 20.0%
!!! TTATGGAATTTGCTATTTTT+AGG - chr8_3:1139808-1139827 Msa1268180:five_prime_UTR 20.0%
!! TATAGGTTTCAAAATTTCTA+TGG + chr8_3:1139882-1139901 None:intergenic 20.0%
!!! CAATCAGGTTAAATTTTTAT+AGG + chr8_3:1139899-1139918 None:intergenic 20.0%
!! GACAAGAAATTCAAAATATA+TGG + chr8_3:1137844-1137863 None:intergenic 20.0%
!!! TTTTTTGGATTTCACTATTT+GGG - chr8_3:1138194-1138213 Msa1268180:CDS 20.0%
!! CTGTTAGTATTATGAATAAA+TGG - chr8_3:1138409-1138428 Msa1268180:CDS 20.0%
!!! TATTATGAATAAATGGATTG+TGG - chr8_3:1138416-1138435 Msa1268180:CDS 20.0%
!!! TTATGGAATTTGCTATTTTT+AGG - chr8_3:1139808-1139827 Msa1268180:five_prime_UTR 20.0%
!! TATAGGTTTCAAAATTTCTA+TGG + chr8_3:1139882-1139901 None:intergenic 20.0%
!!! CAATCAGGTTAAATTTTTAT+AGG + chr8_3:1139899-1139918 None:intergenic 20.0%
! ATATTAACTACTTTACCTCA+AGG + chr8_3:1138126-1138145 None:intergenic 25.0%
!!! CTTTTTTGGATTTCACTATT+TGG - chr8_3:1138193-1138212 Msa1268180:CDS 25.0%
!! GTTTTACGATTTCACTATTA+GGG - chr8_3:1138216-1138235 Msa1268180:CDS 25.0%
! CTTTCTACATTTCACTATTA+GGG - chr8_3:1138257-1138276 Msa1268180:CDS 25.0%
! TTTCTGGATATTCAGTATTA+AGG - chr8_3:1138306-1138325 Msa1268180:CDS 25.0%
! TTCTTGTATTACATTGTTGT+AGG - chr8_3:1138443-1138462 Msa1268180:CDS 25.0%
! TCTTGTATTACATTGTTGTA+GGG - chr8_3:1138444-1138463 Msa1268180:CDS 25.0%
! GTTTAATGCTTTGATTGTTA+GGG - chr8_3:1138467-1138486 Msa1268180:CDS 25.0%
!!! TTATTGATTTGACGTTGTTA+AGG - chr8_3:1138616-1138635 Msa1268180:CDS 25.0%
! ATTAGCATAGTGAATAAACA+AGG + chr8_3:1138664-1138683 None:intergenic 25.0%
!! AATGATTTTTCACGATTACT+TGG - chr8_3:1139739-1139758 Msa1268180:five_prime_UTR 25.0%
!! ATGATTTTTCACGATTACTT+GGG - chr8_3:1139740-1139759 Msa1268180:five_prime_UTR 25.0%
! TTCAAAATTTCTATGGTAGA+AGG + chr8_3:1139875-1139894 None:intergenic 25.0%
! AATTTAACCTGATTGAGTAT+TGG - chr8_3:1139904-1139923 Msa1268180:five_prime_UTR 25.0%
! ATATTAACTACTTTACCTCA+AGG + chr8_3:1138126-1138145 None:intergenic 25.0%
!!! CTTTTTTGGATTTCACTATT+TGG - chr8_3:1138193-1138212 Msa1268180:CDS 25.0%
!! GTTTTACGATTTCACTATTA+GGG - chr8_3:1138216-1138235 Msa1268180:CDS 25.0%
! CTTTCTACATTTCACTATTA+GGG - chr8_3:1138257-1138276 Msa1268180:CDS 25.0%
! TTTCTGGATATTCAGTATTA+AGG - chr8_3:1138306-1138325 Msa1268180:CDS 25.0%
! TTCTTGTATTACATTGTTGT+AGG - chr8_3:1138443-1138462 Msa1268180:CDS 25.0%
! TCTTGTATTACATTGTTGTA+GGG - chr8_3:1138444-1138463 Msa1268180:CDS 25.0%
! GTTTAATGCTTTGATTGTTA+GGG - chr8_3:1138467-1138486 Msa1268180:CDS 25.0%
!!! TTATTGATTTGACGTTGTTA+AGG - chr8_3:1138616-1138635 Msa1268180:CDS 25.0%
! ATTAGCATAGTGAATAAACA+AGG + chr8_3:1138664-1138683 None:intergenic 25.0%
!! AATGATTTTTCACGATTACT+TGG - chr8_3:1139739-1139758 Msa1268180:five_prime_UTR 25.0%
!! ATGATTTTTCACGATTACTT+GGG - chr8_3:1139740-1139759 Msa1268180:five_prime_UTR 25.0%
! TTCAAAATTTCTATGGTAGA+AGG + chr8_3:1139875-1139894 None:intergenic 25.0%
! AATTTAACCTGATTGAGTAT+TGG - chr8_3:1139904-1139923 Msa1268180:five_prime_UTR 25.0%
AGTAGCATTTATCTTGACTT+CGG + chr8_3:1137882-1137901 None:intergenic 30.0%
TCCAAAAAAGCAAAGAAGAA+GGG + chr8_3:1138183-1138202 None:intergenic 30.0%
ATCCAAAAAAGCAAAGAAGA+AGG + chr8_3:1138184-1138203 None:intergenic 30.0%
! GGTTTTACGATTTCACTATT+AGG - chr8_3:1138215-1138234 Msa1268180:CDS 30.0%
AATAGTGAAATGTAGAAAGC+TGG + chr8_3:1138256-1138275 None:intergenic 30.0%
GCTTTCTACATTTCACTATT+AGG - chr8_3:1138256-1138275 Msa1268180:CDS 30.0%
CTTGTATTACATTGTTGTAG+GGG - chr8_3:1138445-1138464 Msa1268180:CDS 30.0%
GGTTTAATGCTTTGATTGTT+AGG - chr8_3:1138466-1138485 Msa1268180:CDS 30.0%
TGTTAGGGTTATGTACAAAT+GGG - chr8_3:1138560-1138579 Msa1268180:CDS 30.0%
! AGGTCAAAAGCTTTATCATT+GGG + chr8_3:1138879-1138898 None:intergenic 30.0%
! AAGGTCAAAAGCTTTATCAT+TGG + chr8_3:1138880-1138899 None:intergenic 30.0%
! TAAAGCTTTTGACCTTTTGA+TGG - chr8_3:1138884-1138903 Msa1268180:CDS 30.0%
! AAAGCTTTTGACCTTTTGAT+GGG - chr8_3:1138885-1138904 Msa1268180:CDS 30.0%
! TGATTTTTCACGATTACTTG+GGG - chr8_3:1139741-1139760 Msa1268180:five_prime_UTR 30.0%
!!! GGAATTTGCTATTTTTAGGA+TGG - chr8_3:1139812-1139831 Msa1268180:five_prime_UTR 30.0%
AGTAGCATTTATCTTGACTT+CGG + chr8_3:1137882-1137901 None:intergenic 30.0%
TCCAAAAAAGCAAAGAAGAA+GGG + chr8_3:1138183-1138202 None:intergenic 30.0%
ATCCAAAAAAGCAAAGAAGA+AGG + chr8_3:1138184-1138203 None:intergenic 30.0%
! GGTTTTACGATTTCACTATT+AGG - chr8_3:1138215-1138234 Msa1268180:CDS 30.0%
AATAGTGAAATGTAGAAAGC+TGG + chr8_3:1138256-1138275 None:intergenic 30.0%
GCTTTCTACATTTCACTATT+AGG - chr8_3:1138256-1138275 Msa1268180:CDS 30.0%
CTTGTATTACATTGTTGTAG+GGG - chr8_3:1138445-1138464 Msa1268180:CDS 30.0%
GGTTTAATGCTTTGATTGTT+AGG - chr8_3:1138466-1138485 Msa1268180:CDS 30.0%
TGTTAGGGTTATGTACAAAT+GGG - chr8_3:1138560-1138579 Msa1268180:CDS 30.0%
! AGGTCAAAAGCTTTATCATT+GGG + chr8_3:1138879-1138898 None:intergenic 30.0%
! AAGGTCAAAAGCTTTATCAT+TGG + chr8_3:1138880-1138899 None:intergenic 30.0%
! TAAAGCTTTTGACCTTTTGA+TGG - chr8_3:1138884-1138903 Msa1268180:CDS 30.0%
! AAAGCTTTTGACCTTTTGAT+GGG - chr8_3:1138885-1138904 Msa1268180:CDS 30.0%
! TGATTTTTCACGATTACTTG+GGG - chr8_3:1139741-1139760 Msa1268180:five_prime_UTR 30.0%
!!! GGAATTTGCTATTTTTAGGA+TGG - chr8_3:1139812-1139831 Msa1268180:five_prime_UTR 30.0%
! TTGATAAAGAGTGTGGAAGT+GGG + chr8_3:1138014-1138033 None:intergenic 35.0%
CCAAAAAAGCAAAGAAGAAG+GGG + chr8_3:1138182-1138201 None:intergenic 35.0%
! CTATTAGGGTGTTACACTAT+TGG - chr8_3:1138271-1138290 Msa1268180:CDS 35.0%
!!! TTGGCTTTGATCTTGTTTTC+TGG - chr8_3:1138290-1138309 Msa1268180:CDS 35.0%
!! CTTCAGCTTGTTACATTACA+TGG - chr8_3:1138343-1138362 Msa1268180:CDS 35.0%
TTCTTGTATTACACCGTTGT+TGG - chr8_3:1138521-1138540 Msa1268180:CDS 35.0%
TCTTGTATTACACCGTTGTT+GGG - chr8_3:1138522-1138541 Msa1268180:CDS 35.0%
!! GTCTATTGGTTTCACTGTTA+GGG - chr8_3:1138545-1138564 Msa1268180:CDS 35.0%
CTGTTAGGGTTATGTACAAA+TGG - chr8_3:1138559-1138578 Msa1268180:CDS 35.0%
! TGTAGGCTTTTCCAAATGAA+CGG + chr8_3:1138961-1138980 None:intergenic 35.0%
AGAAAATTCATGACATCCCA+AGG + chr8_3:1138984-1139003 None:intergenic 35.0%
!! ATTCACACCATGTTCTAGAA+CGG + chr8_3:1139258-1139277 None:intergenic 35.0%
TAGAACATGGTGTGAATGAT+GGG - chr8_3:1139261-1139280 Msa1268180:intron 35.0%
TATCATCTTCCTCTTCAATC+TGG + chr8_3:1139679-1139698 None:intergenic 35.0%
AGAGGAAGATGATAATTGAC+CGG - chr8_3:1139685-1139704 Msa1268180:intron 35.0%
AGCTAACAAATCAGAAACAC+CGG + chr8_3:1139707-1139726 None:intergenic 35.0%
! GATTTTTCACGATTACTTGG+GGG - chr8_3:1139742-1139761 Msa1268180:five_prime_UTR 35.0%
! GGTTTATTGGATGGGATTTT+GGG - chr8_3:1139763-1139782 Msa1268180:five_prime_UTR 35.0%
!!! GGGATTTTGGGTTATTTAGA+AGG - chr8_3:1139775-1139794 Msa1268180:five_prime_UTR 35.0%
! TTTGGGTTATTTAGAAGGCA+TGG - chr8_3:1139780-1139799 Msa1268180:five_prime_UTR 35.0%
!! TAGAAGGCATGGATTAGTTA+TGG - chr8_3:1139791-1139810 Msa1268180:five_prime_UTR 35.0%
ATCTCTTAGACTGCATGATT+TGG - chr8_3:1139841-1139860 Msa1268180:five_prime_UTR 35.0%
ACAGAAACCAATACTCAATC+AGG + chr8_3:1139914-1139933 None:intergenic 35.0%
AAAGTCTCCATAACCTCTTT+AGG + chr8_3:1139977-1139996 None:intergenic 35.0%
AACACAATTCAGCAGAGAAT+TGG + chr8_3:1140007-1140026 None:intergenic 35.0%
! TTGATAAAGAGTGTGGAAGT+GGG + chr8_3:1138014-1138033 None:intergenic 35.0%
CCAAAAAAGCAAAGAAGAAG+GGG + chr8_3:1138182-1138201 None:intergenic 35.0%
! CTATTAGGGTGTTACACTAT+TGG - chr8_3:1138271-1138290 Msa1268180:CDS 35.0%
!!! TTGGCTTTGATCTTGTTTTC+TGG - chr8_3:1138290-1138309 Msa1268180:CDS 35.0%
!! CTTCAGCTTGTTACATTACA+TGG - chr8_3:1138343-1138362 Msa1268180:CDS 35.0%
TTCTTGTATTACACCGTTGT+TGG - chr8_3:1138521-1138540 Msa1268180:CDS 35.0%
TCTTGTATTACACCGTTGTT+GGG - chr8_3:1138522-1138541 Msa1268180:CDS 35.0%
!! GTCTATTGGTTTCACTGTTA+GGG - chr8_3:1138545-1138564 Msa1268180:CDS 35.0%
CTGTTAGGGTTATGTACAAA+TGG - chr8_3:1138559-1138578 Msa1268180:CDS 35.0%
! TGTAGGCTTTTCCAAATGAA+CGG + chr8_3:1138961-1138980 None:intergenic 35.0%
AGAAAATTCATGACATCCCA+AGG + chr8_3:1138984-1139003 None:intergenic 35.0%
!! ATTCACACCATGTTCTAGAA+CGG + chr8_3:1139258-1139277 None:intergenic 35.0%
TAGAACATGGTGTGAATGAT+GGG - chr8_3:1139261-1139280 Msa1268180:intron 35.0%
TATCATCTTCCTCTTCAATC+TGG + chr8_3:1139679-1139698 None:intergenic 35.0%
AGAGGAAGATGATAATTGAC+CGG - chr8_3:1139685-1139704 Msa1268180:intron 35.0%
AGCTAACAAATCAGAAACAC+CGG + chr8_3:1139707-1139726 None:intergenic 35.0%
! GATTTTTCACGATTACTTGG+GGG - chr8_3:1139742-1139761 Msa1268180:five_prime_UTR 35.0%
! GGTTTATTGGATGGGATTTT+GGG - chr8_3:1139763-1139782 Msa1268180:five_prime_UTR 35.0%
!!! GGGATTTTGGGTTATTTAGA+AGG - chr8_3:1139775-1139794 Msa1268180:five_prime_UTR 35.0%
! TTTGGGTTATTTAGAAGGCA+TGG - chr8_3:1139780-1139799 Msa1268180:five_prime_UTR 35.0%
!! TAGAAGGCATGGATTAGTTA+TGG - chr8_3:1139791-1139810 Msa1268180:five_prime_UTR 35.0%
ATCTCTTAGACTGCATGATT+TGG - chr8_3:1139841-1139860 Msa1268180:five_prime_UTR 35.0%
ACAGAAACCAATACTCAATC+AGG + chr8_3:1139914-1139933 None:intergenic 35.0%
AAAGTCTCCATAACCTCTTT+AGG + chr8_3:1139977-1139996 None:intergenic 35.0%
AACACAATTCAGCAGAGAAT+TGG + chr8_3:1140007-1140026 None:intergenic 35.0%
CCACAGCTTCCTATTACAAA+CGG - chr8_3:1137970-1137989 Msa1268180:three_prime_UTR 40.0%
TTTACTGGGCCGTTTGTAAT+AGG + chr8_3:1137982-1138001 None:intergenic 40.0%
GTGGGCTTCAAACATTTACT+GGG + chr8_3:1137996-1138015 None:intergenic 40.0%
! AGTGGGCTTCAAACATTTAC+TGG + chr8_3:1137997-1138016 None:intergenic 40.0%
! CTTGATAAAGAGTGTGGAAG+TGG + chr8_3:1138015-1138034 None:intergenic 40.0%
TCGTGTCTTGATAAAGAGTG+TGG + chr8_3:1138021-1138040 None:intergenic 40.0%
! TCTGATCTGAAACTTCCTTG+AGG - chr8_3:1138108-1138127 Msa1268180:three_prime_UTR 40.0%
!!! CCCCTTCTTCTTTGCTTTTT+TGG - chr8_3:1138179-1138198 Msa1268180:CDS 40.0%
CTTGTATTACACCGTTGTTG+GGG - chr8_3:1138523-1138542 Msa1268180:CDS 40.0%
AAACCAATAGACCCCAACAA+CGG + chr8_3:1138537-1138556 None:intergenic 40.0%
!! GGTCTATTGGTTTCACTGTT+AGG - chr8_3:1138544-1138563 Msa1268180:CDS 40.0%
AGGGTTATGTACAAATGGGT+TGG - chr8_3:1138564-1138583 Msa1268180:CDS 40.0%
! AGCTACAATGAAGAGCATGA+GGG - chr8_3:1138783-1138802 Msa1268180:CDS 40.0%
GTAGCGCAGATACAAAAAGT+AGG + chr8_3:1138835-1138854 None:intergenic 40.0%
! TTTTTGTATCTGCGCTACCA+GGG - chr8_3:1138837-1138856 Msa1268180:CDS 40.0%
GAAATGCATCAAACATACCC+TGG + chr8_3:1138857-1138876 None:intergenic 40.0%
ATTTGGAAAAGCCTACACCT+TGG - chr8_3:1138964-1138983 Msa1268180:CDS 40.0%
TTTGGAAAAGCCTACACCTT+GGG - chr8_3:1138965-1138984 Msa1268180:CDS 40.0%
TCAAACTAGGATCACCAAGT+GGG + chr8_3:1139028-1139047 None:intergenic 40.0%
ATCAAACTAGGATCACCAAG+TGG + chr8_3:1139029-1139048 None:intergenic 40.0%
TGATCCTAGTTTGATGCTGT+GGG - chr8_3:1139034-1139053 Msa1268180:CDS 40.0%
!! ATTCACACCATGTTCTGGAA+CGG + chr8_3:1139126-1139145 None:intergenic 40.0%
CAGAACATGGTGTGAATGAT+GGG - chr8_3:1139129-1139148 Msa1268180:intron 40.0%
TGAACCTGAAAATGCTCTTC+AGG - chr8_3:1139181-1139200 Msa1268180:intron 40.0%
CTAGAACATGGTGTGAATGA+TGG - chr8_3:1139260-1139279 Msa1268180:intron 40.0%
TGAACCTGAAAATGCTCTTC+AGG - chr8_3:1139181-1139200 Msa1268180:intron 40.0%
!!! TCTTCCTGAAGAGCATTTTC+AGG + chr8_3:1139320-1139339 None:intergenic 40.0%
GAAAATGCTCTTCAGGAAGA+TGG - chr8_3:1139320-1139339 Msa1268180:intron 40.0%
! TCCACTCCAGAATGGATTTA+TGG - chr8_3:1139478-1139497 Msa1268180:intron 40.0%
GGTATGCCATAAATCCATTC+TGG + chr8_3:1139487-1139506 None:intergenic 40.0%
TATGGCATACCATAACGTAG+CGG - chr8_3:1139496-1139515 Msa1268180:intron 40.0%
!! CATAAATCCATTCTGGAGTG+GGG + chr8_3:1139480-1139499 None:intergenic 40.0%
!! CCATAAATCCATTCTGGAGT+GGG + chr8_3:1139481-1139500 None:intergenic 40.0%
! GAAGTGCCATAAATCCATTC+TGG + chr8_3:1139550-1139569 None:intergenic 40.0%
GGATTTATGGCACTTCAGAA+TGG - chr8_3:1139554-1139573 Msa1268180:intron 40.0%
!! TCCACTCCAGAATGGATTTT+TGG - chr8_3:1139628-1139647 Msa1268180:intron 40.0%
GGTTTGCCAAAAATCCATTC+TGG + chr8_3:1139637-1139656 None:intergenic 40.0%
!!! GGATTTTTGGCAAACCAGAA+TGG - chr8_3:1139641-1139660 Msa1268180:intron 40.0%
ACGATTACTTGGGGGTTTAT+TGG - chr8_3:1139750-1139769 Msa1268180:five_prime_UTR 40.0%
TTACTTGGGGGTTTATTGGA+TGG - chr8_3:1139754-1139773 Msa1268180:five_prime_UTR 40.0%
TACTTGGGGGTTTATTGGAT+GGG - chr8_3:1139755-1139774 Msa1268180:five_prime_UTR 40.0%
! GGGTTTATTGGATGGGATTT+TGG - chr8_3:1139762-1139781 Msa1268180:five_prime_UTR 40.0%
CTCCATAACCTCTTTAGGTA+GGG + chr8_3:1139972-1139991 None:intergenic 40.0%
TCTCCATAACCTCTTTAGGT+AGG + chr8_3:1139973-1139992 None:intergenic 40.0%
AAGAGGTTATGGAGACTTTG+TGG - chr8_3:1139978-1139997 Msa1268180:five_prime_UTR 40.0%
CCACAGCTTCCTATTACAAA+CGG - chr8_3:1137970-1137989 Msa1268180:three_prime_UTR 40.0%
TTTACTGGGCCGTTTGTAAT+AGG + chr8_3:1137982-1138001 None:intergenic 40.0%
GTGGGCTTCAAACATTTACT+GGG + chr8_3:1137996-1138015 None:intergenic 40.0%
! AGTGGGCTTCAAACATTTAC+TGG + chr8_3:1137997-1138016 None:intergenic 40.0%
! CTTGATAAAGAGTGTGGAAG+TGG + chr8_3:1138015-1138034 None:intergenic 40.0%
TCGTGTCTTGATAAAGAGTG+TGG + chr8_3:1138021-1138040 None:intergenic 40.0%
! TCTGATCTGAAACTTCCTTG+AGG - chr8_3:1138108-1138127 Msa1268180:three_prime_UTR 40.0%
!!! CCCCTTCTTCTTTGCTTTTT+TGG - chr8_3:1138179-1138198 Msa1268180:CDS 40.0%
CTTGTATTACACCGTTGTTG+GGG - chr8_3:1138523-1138542 Msa1268180:CDS 40.0%
AAACCAATAGACCCCAACAA+CGG + chr8_3:1138537-1138556 None:intergenic 40.0%
!! GGTCTATTGGTTTCACTGTT+AGG - chr8_3:1138544-1138563 Msa1268180:CDS 40.0%
AGGGTTATGTACAAATGGGT+TGG - chr8_3:1138564-1138583 Msa1268180:CDS 40.0%
! AGCTACAATGAAGAGCATGA+GGG - chr8_3:1138783-1138802 Msa1268180:CDS 40.0%
GTAGCGCAGATACAAAAAGT+AGG + chr8_3:1138835-1138854 None:intergenic 40.0%
! TTTTTGTATCTGCGCTACCA+GGG - chr8_3:1138837-1138856 Msa1268180:CDS 40.0%
GAAATGCATCAAACATACCC+TGG + chr8_3:1138857-1138876 None:intergenic 40.0%
ATTTGGAAAAGCCTACACCT+TGG - chr8_3:1138964-1138983 Msa1268180:CDS 40.0%
TTTGGAAAAGCCTACACCTT+GGG - chr8_3:1138965-1138984 Msa1268180:CDS 40.0%
TCAAACTAGGATCACCAAGT+GGG + chr8_3:1139028-1139047 None:intergenic 40.0%
ATCAAACTAGGATCACCAAG+TGG + chr8_3:1139029-1139048 None:intergenic 40.0%
TGATCCTAGTTTGATGCTGT+GGG - chr8_3:1139034-1139053 Msa1268180:CDS 40.0%
!! ATTCACACCATGTTCTGGAA+CGG + chr8_3:1139126-1139145 None:intergenic 40.0%
CAGAACATGGTGTGAATGAT+GGG - chr8_3:1139129-1139148 Msa1268180:intron 40.0%
TGAACCTGAAAATGCTCTTC+AGG - chr8_3:1139181-1139200 Msa1268180:intron 40.0%
CTAGAACATGGTGTGAATGA+TGG - chr8_3:1139260-1139279 Msa1268180:intron 40.0%
TGAACCTGAAAATGCTCTTC+AGG - chr8_3:1139181-1139200 Msa1268180:intron 40.0%
!!! TCTTCCTGAAGAGCATTTTC+AGG + chr8_3:1139320-1139339 None:intergenic 40.0%
GAAAATGCTCTTCAGGAAGA+TGG - chr8_3:1139320-1139339 Msa1268180:intron 40.0%
! TCCACTCCAGAATGGATTTA+TGG - chr8_3:1139478-1139497 Msa1268180:intron 40.0%
GGTATGCCATAAATCCATTC+TGG + chr8_3:1139487-1139506 None:intergenic 40.0%
TATGGCATACCATAACGTAG+CGG - chr8_3:1139496-1139515 Msa1268180:intron 40.0%
!! CATAAATCCATTCTGGAGTG+GGG + chr8_3:1139480-1139499 None:intergenic 40.0%
!! CCATAAATCCATTCTGGAGT+GGG + chr8_3:1139481-1139500 None:intergenic 40.0%
! GAAGTGCCATAAATCCATTC+TGG + chr8_3:1139550-1139569 None:intergenic 40.0%
GGATTTATGGCACTTCAGAA+TGG - chr8_3:1139554-1139573 Msa1268180:intron 40.0%
!! TCCACTCCAGAATGGATTTT+TGG - chr8_3:1139628-1139647 Msa1268180:intron 40.0%
GGTTTGCCAAAAATCCATTC+TGG + chr8_3:1139637-1139656 None:intergenic 40.0%
!!! GGATTTTTGGCAAACCAGAA+TGG - chr8_3:1139641-1139660 Msa1268180:intron 40.0%
ACGATTACTTGGGGGTTTAT+TGG - chr8_3:1139750-1139769 Msa1268180:five_prime_UTR 40.0%
TTACTTGGGGGTTTATTGGA+TGG - chr8_3:1139754-1139773 Msa1268180:five_prime_UTR 40.0%
TACTTGGGGGTTTATTGGAT+GGG - chr8_3:1139755-1139774 Msa1268180:five_prime_UTR 40.0%
! GGGTTTATTGGATGGGATTT+TGG - chr8_3:1139762-1139781 Msa1268180:five_prime_UTR 40.0%
CTCCATAACCTCTTTAGGTA+GGG + chr8_3:1139972-1139991 None:intergenic 40.0%
TCTCCATAACCTCTTTAGGT+AGG + chr8_3:1139973-1139992 None:intergenic 40.0%
AAGAGGTTATGGAGACTTTG+TGG - chr8_3:1139978-1139997 Msa1268180:five_prime_UTR 40.0%
CCGTTTGTAATAGGAAGCTG+TGG + chr8_3:1137973-1137992 None:intergenic 45.0%
TCCCAAAAACTTTCTTCCGC+CGG - chr8_3:1138051-1138070 Msa1268180:three_prime_UTR 45.0%
! ACCGGCGGAAGAAAGTTTTT+GGG + chr8_3:1138055-1138074 None:intergenic 45.0%
! AACCGGCGGAAGAAAGTTTT+TGG + chr8_3:1138056-1138075 None:intergenic 45.0%
!!! CTGGGAAGCACATTTTTAGC+AGG - chr8_3:1138082-1138101 Msa1268180:three_prime_UTR 45.0%
GGCTCTTGTAATCACAGTCA+TGG - chr8_3:1138722-1138741 Msa1268180:CDS 45.0%
AAGATGAAGACGCACCTGTA+TGG - chr8_3:1138745-1138764 Msa1268180:CDS 45.0%
AGATGAAGACGCACCTGTAT+GGG - chr8_3:1138746-1138765 Msa1268180:CDS 45.0%
! GAGCTACAATGAAGAGCATG+AGG - chr8_3:1138782-1138801 Msa1268180:CDS 45.0%
! ACAATGAAGAGCATGAGGGT+TGG - chr8_3:1138787-1138806 Msa1268180:CDS 45.0%
! CTTTTTGTATCTGCGCTACC+AGG - chr8_3:1138836-1138855 Msa1268180:CDS 45.0%
CCAAAGATCGTCCCATCAAA+AGG + chr8_3:1138899-1138918 None:intergenic 45.0%
! CCTTTTGATGGGACGATCTT+TGG - chr8_3:1138896-1138915 Msa1268180:CDS 45.0%
! GCTTTTCCAAATGAACGGCA+CGG + chr8_3:1138956-1138975 None:intergenic 45.0%
TTCATGACATCCCAAGGTGT+AGG + chr8_3:1138978-1138997 None:intergenic 45.0%
CAAACTAGGATCACCAAGTG+GGG + chr8_3:1139027-1139046 None:intergenic 45.0%
GTGATCCTAGTTTGATGCTG+TGG - chr8_3:1139033-1139052 Msa1268180:CDS 45.0%
GATCCTAGTTTGATGCTGTG+GGG - chr8_3:1139035-1139054 Msa1268180:CDS 45.0%
ACAGGCTCATAAAACCTTCC+TGG + chr8_3:1139062-1139081 None:intergenic 45.0%
!! AGGTTTTATGAGCCTGTGCA+TGG - chr8_3:1139065-1139084 Msa1268180:CDS 45.0%
CCATCATTCACACCATGTTC+TGG + chr8_3:1139131-1139150 None:intergenic 45.0%
CCAGAACATGGTGTGAATGA+TGG - chr8_3:1139128-1139147 Msa1268180:intron 45.0%
GGGAATGTTGTGTACGATGT+TGG - chr8_3:1139149-1139168 Msa1268180:intron 45.0%
ACCTGAAAATGCTCTTCAGG+AGG - chr8_3:1139184-1139203 Msa1268180:intron 45.0%
!!! TCCTCCTGAAGAGCATTTTC+AGG + chr8_3:1139188-1139207 None:intergenic 45.0%
GAAAATGCTCTTCAGGAGGA+TGG - chr8_3:1139188-1139207 Msa1268180:intron 45.0%
! GATGGTTTGCATGGTGATGA+TGG - chr8_3:1139206-1139225 Msa1268180:intron 45.0%
!! TGTTCTAGAACGGCAAGAAC+CGG + chr8_3:1139248-1139267 None:intergenic 45.0%
!! GTTCTTGCCGTTCTAGAACA+TGG - chr8_3:1139248-1139267 Msa1268180:intron 45.0%
! CTTCAGGAAGATGGTTTGCA+TGG - chr8_3:1139329-1139348 Msa1268180:intron 45.0%
CGAATGGATCATTCACACCA+TGG + chr8_3:1139400-1139419 None:intergenic 45.0%
GGGTTCACAAACTCATCGAA+TGG + chr8_3:1139416-1139435 None:intergenic 45.0%
! GCCATAAATCCATTCTGGAG+TGG + chr8_3:1139482-1139501 None:intergenic 45.0%
! CCCACTCCAGAATGGATTTA+TGG - chr8_3:1139541-1139560 Msa1268180:intron 45.0%
! GCCATAAATCCATTCTGGAG+TGG + chr8_3:1139482-1139501 None:intergenic 45.0%
ATGGCACTTCAGAATGGAGT+TGG - chr8_3:1139560-1139579 Msa1268180:intron 45.0%
GCACACCAGATTGGATTTCT+TGG - chr8_3:1139584-1139603 Msa1268180:intron 45.0%
GGTGACCAAGAAATCCAATC+TGG + chr8_3:1139592-1139611 None:intergenic 45.0%
GGATTTCTTGGTCACCAGAA+TGG - chr8_3:1139596-1139615 Msa1268180:intron 45.0%
! GCCAAAAATCCATTCTGGAG+TGG + chr8_3:1139632-1139651 None:intergenic 45.0%
TTGGCAAACCAGAATGGAGT+TGG - chr8_3:1139647-1139666 Msa1268180:intron 45.0%
TTCCATCTCCCTACCTAAAG+AGG - chr8_3:1139961-1139980 Msa1268180:five_prime_UTR 45.0%
AACCTCTTTAGGTAGGGAGA+TGG + chr8_3:1139966-1139985 None:intergenic 45.0%
CTCCCTACCTAAAGAGGTTA+TGG - chr8_3:1139967-1139986 Msa1268180:five_prime_UTR 45.0%
CCGTTTGTAATAGGAAGCTG+TGG + chr8_3:1137973-1137992 None:intergenic 45.0%
TCCCAAAAACTTTCTTCCGC+CGG - chr8_3:1138051-1138070 Msa1268180:three_prime_UTR 45.0%
! ACCGGCGGAAGAAAGTTTTT+GGG + chr8_3:1138055-1138074 None:intergenic 45.0%
! AACCGGCGGAAGAAAGTTTT+TGG + chr8_3:1138056-1138075 None:intergenic 45.0%
!!! CTGGGAAGCACATTTTTAGC+AGG - chr8_3:1138082-1138101 Msa1268180:three_prime_UTR 45.0%
GGCTCTTGTAATCACAGTCA+TGG - chr8_3:1138722-1138741 Msa1268180:CDS 45.0%
AAGATGAAGACGCACCTGTA+TGG - chr8_3:1138745-1138764 Msa1268180:CDS 45.0%
AGATGAAGACGCACCTGTAT+GGG - chr8_3:1138746-1138765 Msa1268180:CDS 45.0%
! GAGCTACAATGAAGAGCATG+AGG - chr8_3:1138782-1138801 Msa1268180:CDS 45.0%
! ACAATGAAGAGCATGAGGGT+TGG - chr8_3:1138787-1138806 Msa1268180:CDS 45.0%
! CTTTTTGTATCTGCGCTACC+AGG - chr8_3:1138836-1138855 Msa1268180:CDS 45.0%
CCAAAGATCGTCCCATCAAA+AGG + chr8_3:1138899-1138918 None:intergenic 45.0%
! CCTTTTGATGGGACGATCTT+TGG - chr8_3:1138896-1138915 Msa1268180:CDS 45.0%
! GCTTTTCCAAATGAACGGCA+CGG + chr8_3:1138956-1138975 None:intergenic 45.0%
TTCATGACATCCCAAGGTGT+AGG + chr8_3:1138978-1138997 None:intergenic 45.0%
CAAACTAGGATCACCAAGTG+GGG + chr8_3:1139027-1139046 None:intergenic 45.0%
GTGATCCTAGTTTGATGCTG+TGG - chr8_3:1139033-1139052 Msa1268180:CDS 45.0%
GATCCTAGTTTGATGCTGTG+GGG - chr8_3:1139035-1139054 Msa1268180:CDS 45.0%
ACAGGCTCATAAAACCTTCC+TGG + chr8_3:1139062-1139081 None:intergenic 45.0%
!! AGGTTTTATGAGCCTGTGCA+TGG - chr8_3:1139065-1139084 Msa1268180:CDS 45.0%
CCATCATTCACACCATGTTC+TGG + chr8_3:1139131-1139150 None:intergenic 45.0%
CCAGAACATGGTGTGAATGA+TGG - chr8_3:1139128-1139147 Msa1268180:intron 45.0%
GGGAATGTTGTGTACGATGT+TGG - chr8_3:1139149-1139168 Msa1268180:intron 45.0%
ACCTGAAAATGCTCTTCAGG+AGG - chr8_3:1139184-1139203 Msa1268180:intron 45.0%
!!! TCCTCCTGAAGAGCATTTTC+AGG + chr8_3:1139188-1139207 None:intergenic 45.0%
GAAAATGCTCTTCAGGAGGA+TGG - chr8_3:1139188-1139207 Msa1268180:intron 45.0%
! GATGGTTTGCATGGTGATGA+TGG - chr8_3:1139206-1139225 Msa1268180:intron 45.0%
!! TGTTCTAGAACGGCAAGAAC+CGG + chr8_3:1139248-1139267 None:intergenic 45.0%
!! GTTCTTGCCGTTCTAGAACA+TGG - chr8_3:1139248-1139267 Msa1268180:intron 45.0%
! CTTCAGGAAGATGGTTTGCA+TGG - chr8_3:1139329-1139348 Msa1268180:intron 45.0%
CGAATGGATCATTCACACCA+TGG + chr8_3:1139400-1139419 None:intergenic 45.0%
GGGTTCACAAACTCATCGAA+TGG + chr8_3:1139416-1139435 None:intergenic 45.0%
! GCCATAAATCCATTCTGGAG+TGG + chr8_3:1139482-1139501 None:intergenic 45.0%
! CCCACTCCAGAATGGATTTA+TGG - chr8_3:1139541-1139560 Msa1268180:intron 45.0%
! GCCATAAATCCATTCTGGAG+TGG + chr8_3:1139482-1139501 None:intergenic 45.0%
ATGGCACTTCAGAATGGAGT+TGG - chr8_3:1139560-1139579 Msa1268180:intron 45.0%
GCACACCAGATTGGATTTCT+TGG - chr8_3:1139584-1139603 Msa1268180:intron 45.0%
GGTGACCAAGAAATCCAATC+TGG + chr8_3:1139592-1139611 None:intergenic 45.0%
GGATTTCTTGGTCACCAGAA+TGG - chr8_3:1139596-1139615 Msa1268180:intron 45.0%
! GCCAAAAATCCATTCTGGAG+TGG + chr8_3:1139632-1139651 None:intergenic 45.0%
TTGGCAAACCAGAATGGAGT+TGG - chr8_3:1139647-1139666 Msa1268180:intron 45.0%
TTCCATCTCCCTACCTAAAG+AGG - chr8_3:1139961-1139980 Msa1268180:five_prime_UTR 45.0%
AACCTCTTTAGGTAGGGAGA+TGG + chr8_3:1139966-1139985 None:intergenic 45.0%
CTCCCTACCTAAAGAGGTTA+TGG - chr8_3:1139967-1139986 Msa1268180:five_prime_UTR 45.0%
GTGCTTCCCAGAGACAAAAC+CGG + chr8_3:1138073-1138092 None:intergenic 50.0%
ACACCGTTGTTGGGGTCTAT+TGG - chr8_3:1138531-1138550 Msa1268180:CDS 50.0%
GCACCTGTATGGGATGTTGA+GGG - chr8_3:1138756-1138775 Msa1268180:CDS 50.0%
CAACCCTCAACATCCCATAC+AGG + chr8_3:1138762-1138781 None:intergenic 50.0%
CTGTATGGGATGTTGAGGGT+TGG - chr8_3:1138760-1138779 Msa1268180:CDS 50.0%
TTTCTTAACCCTGTCCCGCT+TGG - chr8_3:1138999-1139018 Msa1268180:CDS 50.0%
TTCTTAACCCTGTCCCGCTT+GGG - chr8_3:1139000-1139019 Msa1268180:CDS 50.0%
!! TGTTCTGGAACGGCAAGATC+CGG + chr8_3:1139116-1139135 None:intergenic 50.0%
GATCTTGCCGTTCCAGAACA+TGG - chr8_3:1139116-1139135 Msa1268180:intron 50.0%
! CTTCAGGAGGATGGTTTGCA+TGG - chr8_3:1139197-1139216 Msa1268180:intron 50.0%
GGATCATTCACACCATGGTC+TGG + chr8_3:1139395-1139414 None:intergenic 50.0%
! TTTGGTGGACCGCTACGTTA+TGG + chr8_3:1139508-1139527 None:intergenic 50.0%
AACGTAGCGGTCCACCAAAA+TGG - chr8_3:1139509-1139528 Msa1268180:intron 50.0%
CTTGGTCACCAGAATGGAGT+TGG - chr8_3:1139602-1139621 Msa1268180:intron 50.0%
TGGAGCACACCAGATTGAAG+AGG - chr8_3:1139667-1139686 Msa1268180:intron 50.0%
GTGCTTCCCAGAGACAAAAC+CGG + chr8_3:1138073-1138092 None:intergenic 50.0%
ACACCGTTGTTGGGGTCTAT+TGG - chr8_3:1138531-1138550 Msa1268180:CDS 50.0%
GCACCTGTATGGGATGTTGA+GGG - chr8_3:1138756-1138775 Msa1268180:CDS 50.0%
CAACCCTCAACATCCCATAC+AGG + chr8_3:1138762-1138781 None:intergenic 50.0%
CTGTATGGGATGTTGAGGGT+TGG - chr8_3:1138760-1138779 Msa1268180:CDS 50.0%
TTTCTTAACCCTGTCCCGCT+TGG - chr8_3:1138999-1139018 Msa1268180:CDS 50.0%
TTCTTAACCCTGTCCCGCTT+GGG - chr8_3:1139000-1139019 Msa1268180:CDS 50.0%
!! TGTTCTGGAACGGCAAGATC+CGG + chr8_3:1139116-1139135 None:intergenic 50.0%
GATCTTGCCGTTCCAGAACA+TGG - chr8_3:1139116-1139135 Msa1268180:intron 50.0%
! CTTCAGGAGGATGGTTTGCA+TGG - chr8_3:1139197-1139216 Msa1268180:intron 50.0%
GGATCATTCACACCATGGTC+TGG + chr8_3:1139395-1139414 None:intergenic 50.0%
! TTTGGTGGACCGCTACGTTA+TGG + chr8_3:1139508-1139527 None:intergenic 50.0%
AACGTAGCGGTCCACCAAAA+TGG - chr8_3:1139509-1139528 Msa1268180:intron 50.0%
CTTGGTCACCAGAATGGAGT+TGG - chr8_3:1139602-1139621 Msa1268180:intron 50.0%
TGGAGCACACCAGATTGAAG+AGG - chr8_3:1139667-1139686 Msa1268180:intron 50.0%
!!! TCTTCCGCCGGTTTTGTCTC+TGG - chr8_3:1138063-1138082 Msa1268180:three_prime_UTR 55.0%
!!! CTTCCGCCGGTTTTGTCTCT+GGG - chr8_3:1138064-1138083 Msa1268180:three_prime_UTR 55.0%
CTTCCCAGAGACAAAACCGG+CGG + chr8_3:1138070-1138089 None:intergenic 55.0%
CGCACCTGTATGGGATGTTG+AGG - chr8_3:1138755-1138774 Msa1268180:CDS 55.0%
! GCATAGCCGTGCCGTTCATT+TGG - chr8_3:1138947-1138966 Msa1268180:CDS 55.0%
TCTTAACCCTGTCCCGCTTG+GGG - chr8_3:1139001-1139020 Msa1268180:CDS 55.0%
GGTCCCCACAGCATCAAACT+AGG + chr8_3:1139041-1139060 None:intergenic 55.0%
AGTTTGATGCTGTGGGGACC+AGG - chr8_3:1139041-1139060 Msa1268180:CDS 55.0%
! GAGCCTGTGCATGGTGTTGA+TGG - chr8_3:1139074-1139093 Msa1268180:CDS 55.0%
! TGGTCTGGAACAGCAAGAGC+CGG + chr8_3:1139380-1139399 None:intergenic 55.0%
!! GCTCTTGCTGTTCCAGACCA+TGG - chr8_3:1139380-1139399 Msa1268180:intron 55.0%
GGAGCTGCAACTCCATTCTG+CGG + chr8_3:1139461-1139480 None:intergenic 55.0%
GTTGCAGCTCCACTCCAGAA+TGG - chr8_3:1139470-1139489 Msa1268180:intron 55.0%
GCGGTCCACCAAAATGGAGT+TGG - chr8_3:1139515-1139534 Msa1268180:intron 55.0%
! GGGCACCAACTCCATTTTGG+TGG + chr8_3:1139523-1139542 None:intergenic 55.0%
!! GTGGGGCACCAACTCCATTT+TGG + chr8_3:1139526-1139545 None:intergenic 55.0%
GGAGTTGGAGCACACCAGAT+TGG - chr8_3:1139575-1139594 Msa1268180:intron 55.0%
GTGGAGCTCCAACTCCATTC+TGG + chr8_3:1139613-1139632 None:intergenic 55.0%
GTTGGAGCTCCACTCCAGAA+TGG - chr8_3:1139620-1139639 Msa1268180:intron 55.0%
GGTGTGCTCCAACTCCATTC+TGG + chr8_3:1139571-1139590 None:intergenic 55.0%
!!! TCTTCCGCCGGTTTTGTCTC+TGG - chr8_3:1138063-1138082 Msa1268180:three_prime_UTR 55.0%
!!! CTTCCGCCGGTTTTGTCTCT+GGG - chr8_3:1138064-1138083 Msa1268180:three_prime_UTR 55.0%
CTTCCCAGAGACAAAACCGG+CGG + chr8_3:1138070-1138089 None:intergenic 55.0%
CGCACCTGTATGGGATGTTG+AGG - chr8_3:1138755-1138774 Msa1268180:CDS 55.0%
! GCATAGCCGTGCCGTTCATT+TGG - chr8_3:1138947-1138966 Msa1268180:CDS 55.0%
TCTTAACCCTGTCCCGCTTG+GGG - chr8_3:1139001-1139020 Msa1268180:CDS 55.0%
GGTCCCCACAGCATCAAACT+AGG + chr8_3:1139041-1139060 None:intergenic 55.0%
AGTTTGATGCTGTGGGGACC+AGG - chr8_3:1139041-1139060 Msa1268180:CDS 55.0%
! GAGCCTGTGCATGGTGTTGA+TGG - chr8_3:1139074-1139093 Msa1268180:CDS 55.0%
! TGGTCTGGAACAGCAAGAGC+CGG + chr8_3:1139380-1139399 None:intergenic 55.0%
!! GCTCTTGCTGTTCCAGACCA+TGG - chr8_3:1139380-1139399 Msa1268180:intron 55.0%
GGAGCTGCAACTCCATTCTG+CGG + chr8_3:1139461-1139480 None:intergenic 55.0%
GTTGCAGCTCCACTCCAGAA+TGG - chr8_3:1139470-1139489 Msa1268180:intron 55.0%
GCGGTCCACCAAAATGGAGT+TGG - chr8_3:1139515-1139534 Msa1268180:intron 55.0%
! GGGCACCAACTCCATTTTGG+TGG + chr8_3:1139523-1139542 None:intergenic 55.0%
!! GTGGGGCACCAACTCCATTT+TGG + chr8_3:1139526-1139545 None:intergenic 55.0%
GGAGTTGGAGCACACCAGAT+TGG - chr8_3:1139575-1139594 Msa1268180:intron 55.0%
GTGGAGCTCCAACTCCATTC+TGG + chr8_3:1139613-1139632 None:intergenic 55.0%
GTTGGAGCTCCACTCCAGAA+TGG - chr8_3:1139620-1139639 Msa1268180:intron 55.0%
GGTGTGCTCCAACTCCATTC+TGG + chr8_3:1139571-1139590 None:intergenic 55.0%
TGATGCTGTGGGGACCAGGA+AGG - chr8_3:1139045-1139064 Msa1268180:CDS 60.0%
GCGCCATCAACACCATGCAC+AGG + chr8_3:1139080-1139099 None:intergenic 60.0%
!! GCATGGTGTTGATGGCGCTG+TGG - chr8_3:1139082-1139101 Msa1268180:CDS 60.0%
TGGCGCTGTGGCTGTGAATC+CGG - chr8_3:1139094-1139113 Msa1268180:CDS 60.0%
!! GCATGGTGATGATGGCGCTG+CGG - chr8_3:1139214-1139233 Msa1268180:intron 60.0%
TGGCGCTGCGGCTATGAATC+CGG - chr8_3:1139226-1139245 Msa1268180:intron 60.0%
!! GCATGGTGTTGATGCCGCTG+AGG - chr8_3:1139346-1139365 Msa1268180:intron 60.0%
GGGCTACAACAGGGGCAAAC+GGG + chr8_3:1139436-1139455 None:intergenic 60.0%
GGGGCTACAACAGGGGCAAA+CGG + chr8_3:1139437-1139456 None:intergenic 60.0%
TGCAACTCCATTCTGCGGCG+GGG + chr8_3:1139456-1139475 None:intergenic 60.0%
CTGCAACTCCATTCTGCGGC+GGG + chr8_3:1139457-1139476 None:intergenic 60.0%
GCTGCAACTCCATTCTGCGG+CGG + chr8_3:1139458-1139477 None:intergenic 60.0%
! GTTGGTGCCCCACTCCAGAA+TGG - chr8_3:1139533-1139552 Msa1268180:intron 60.0%
TGATGCTGTGGGGACCAGGA+AGG - chr8_3:1139045-1139064 Msa1268180:CDS 60.0%
GCGCCATCAACACCATGCAC+AGG + chr8_3:1139080-1139099 None:intergenic 60.0%
!! GCATGGTGTTGATGGCGCTG+TGG - chr8_3:1139082-1139101 Msa1268180:CDS 60.0%
TGGCGCTGTGGCTGTGAATC+CGG - chr8_3:1139094-1139113 Msa1268180:CDS 60.0%
!! GCATGGTGATGATGGCGCTG+CGG - chr8_3:1139214-1139233 Msa1268180:intron 60.0%
TGGCGCTGCGGCTATGAATC+CGG - chr8_3:1139226-1139245 Msa1268180:intron 60.0%
!! GCATGGTGTTGATGCCGCTG+AGG - chr8_3:1139346-1139365 Msa1268180:intron 60.0%
GGGCTACAACAGGGGCAAAC+GGG + chr8_3:1139436-1139455 None:intergenic 60.0%
GGGGCTACAACAGGGGCAAA+CGG + chr8_3:1139437-1139456 None:intergenic 60.0%
TGCAACTCCATTCTGCGGCG+GGG + chr8_3:1139456-1139475 None:intergenic 60.0%
CTGCAACTCCATTCTGCGGC+GGG + chr8_3:1139457-1139476 None:intergenic 60.0%
GCTGCAACTCCATTCTGCGG+CGG + chr8_3:1139458-1139477 None:intergenic 60.0%
! GTTGGTGCCCCACTCCAGAA+TGG - chr8_3:1139533-1139552 Msa1268180:intron 60.0%
TCACCAAGTGGGGCCCCAAG+CGG + chr8_3:1139017-1139036 None:intergenic 65.0%
TGCCGCTGAGGCTGTGCATC+CGG - chr8_3:1139358-1139377 Msa1268180:intron 65.0%
AGCCGGATGCACAGCCTCAG+CGG + chr8_3:1139363-1139382 None:intergenic 65.0%
TCTGCGGCGGGGCTACAACA+GGG + chr8_3:1139445-1139464 None:intergenic 65.0%
TTCTGCGGCGGGGCTACAAC+AGG + chr8_3:1139446-1139465 None:intergenic 65.0%
GTTGTAGCCCCGCCGCAGAA+TGG - chr8_3:1139446-1139465 Msa1268180:intron 65.0%
TCACCAAGTGGGGCCCCAAG+CGG + chr8_3:1139017-1139036 None:intergenic 65.0%
TGCCGCTGAGGCTGTGCATC+CGG - chr8_3:1139358-1139377 Msa1268180:intron 65.0%
AGCCGGATGCACAGCCTCAG+CGG + chr8_3:1139363-1139382 None:intergenic 65.0%
TCTGCGGCGGGGCTACAACA+GGG + chr8_3:1139445-1139464 None:intergenic 65.0%
TTCTGCGGCGGGGCTACAAC+AGG + chr8_3:1139446-1139465 None:intergenic 65.0%
GTTGTAGCCCCGCCGCAGAA+TGG - chr8_3:1139446-1139465 Msa1268180:intron 65.0%
CACCAAGTGGGGCCCCAAGC+GGG + chr8_3:1139016-1139035 None:intergenic 70.0%
CTGCGGCGGGGCTACAACAG+GGG + chr8_3:1139444-1139463 None:intergenic 70.0%
CACCAAGTGGGGCCCCAAGC+GGG + chr8_3:1139016-1139035 None:intergenic 70.0%
CTGCGGCGGGGCTACAACAG+GGG + chr8_3:1139444-1139463 None:intergenic 70.0%
GTGGGGCCCCAAGCGGGACA+GGG + chr8_3:1139010-1139029 None:intergenic 75.0%
AGTGGGGCCCCAAGCGGGAC+AGG + chr8_3:1139011-1139030 None:intergenic 75.0%
GTCCCGCTTGGGGCCCCACT+TGG - chr8_3:1139011-1139030 Msa1268180:CDS 75.0%
GTGGGGCCCCAAGCGGGACA+GGG + chr8_3:1139010-1139029 None:intergenic 75.0%
AGTGGGGCCCCAAGCGGGAC+AGG + chr8_3:1139011-1139030 None:intergenic 75.0%
GTCCCGCTTGGGGCCCCACT+TGG - chr8_3:1139011-1139030 Msa1268180:CDS 75.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 1137836 1140030 1137836 ID=Msa1268180;Name=Msa1268180
chr8_3 mRNA 1137836 1140030 1137836 ID=Msa1268180-mRNA-1;Parent=Msa1268180;Name=Msa1268180-mRNA-1;_AED=0.00;_eAED=0.00;_QI=294|0|0.5|1|0|0.5|2|327|320
chr8_3 exon 1137836 1139125 1137836 ID=Msa1268180-mRNA-1:exon:178;Parent=Msa1268180-mRNA-1
chr8_3 exon 1139737 1140030 1139737 ID=Msa1268180-mRNA-1:exon:177;Parent=Msa1268180-mRNA-1
chr8_3 five_prime_UTR 1139737 1140030 1139737 ID=Msa1268180-mRNA-1:five_prime_utr;Parent=Msa1268180-mRNA-1
chr8_3 CDS 1138163 1139125 1138163 ID=Msa1268180-mRNA-1:cds;Parent=Msa1268180-mRNA-1
chr8_3 three_prime_UTR 1137836 1138162 1137836 ID=Msa1268180-mRNA-1:three_prime_utr;Parent=Msa1268180-mRNA-1
Gene Sequence

>Msa1268180

ATGGAAGATGAAGACGCACCTGTATGGGATGTTGAGGGTTGGAGCTACAATGAAGAGCATGAGGGTTGGAGTTTCAATGAAGAGCAGATAGCCTACTTTTTGTATCTGCGCTACCAGGGTATGTTTGATGCATTTCCCAATGATAAAGCTTTTGACCTTTTGATGGGACGATCTTTGGAAGAAATTATATCGAAGATCGATTATGAGCATAGCCGTGCCGTTCATTTGGAAAAGCCTACACCTTGGGATGTCATGAATTTTCTTAACCCTGTCCCGCTTGGGGCCCCACTTGGTGATCCTAGTTTGATGCTGTGGGGACCAGGAAGGTTTTATGAGCCTGTGCATGGTGTTGATGGCGCTGTGGCTGTGAATCCGGATCTTGCCGTTCCAGAACATGGTGTGAATGATGGGAATGTTGTGTACGATGTTGGAAATCTGTTTGAACCTGAAAATGCTCTTCAGGAGGATGGTTTGCATGGTGATGATGGCGCTGCGGCTATGAATCCGGTTCTTGCCGTTCTAGAACATGGTGTGAATGATGGGAATGTTGTGTACGTTGCTGAAAATCTGTTTGAACCTGAAAATGCTCTTCAGGAAGATGGTTTGCATGGTGTTGATGCCGCTGAGGCTGTGCATCCGGCTCTTGCTGTTCCAGACCATGGTGTGAATGATCCATTCGATGAGTTTGTGAACCCGTTTGCCCCTGTTGTAGCCCCGCCGCAGAATGGAGTTGCAGCTCCACTCCAGAATGGATTTATGGCATACCATAACGTAGCGGTCCACCAAAATGGAGTTGGTGCCCCACTCCAGAATGGATTTATGGCACTTCAGAATGGAGTTGGAGCACACCAGATTGGATTTCTTGGTCACCAGAATGGAGTTGGAGCTCCACTCCAGAATGGATTTTTGGCAAACCAGAATGGAGTTGGAGCACACCAGATTGAAGAGGAAGATGATAATTGA
Protein sequence

>Msa1268180

MEDEDAPVWDVEGWSYNEEHEGWSFNEEQIAYFLYLRYQGMFDAFPNDKAFDLLMGRSLEEIISKIDYEHSRAVHLEKPTPWDVMNFLNPVPLGAPLGDPSLMLWGPGRFYEPVHGVDGAVAVNPDLAVPEHGVNDGNVVYDVGNLFEPENALQEDGLHGDDGAAAMNPVLAVLEHGVNDGNVVYVAENLFEPENALQEDGLHGVDAAEAVHPALAVPDHGVNDPFDEFVNPFAPVVAPPQNGVAAPLQNGFMAYHNVAVHQNGVGAPLQNGFMALQNGVGAHQIGFLGHQNGVGAPLQNGFLANQNGVGAHQIEEEDDN*