Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1268580 | AES94554.2 | 96.316 | 380 | 9 | 1 | 1 | 375 | 35 | 414 | 0.0 | 762 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1268580 | sp|Q9FJX5|BT4_ARATH | 65.000 | 360 | 114 | 2 | 16 | 374 | 20 | 368 | 1.22e-176 | 498 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1268580 | G7K3T4 | 96.316 | 380 | 9 | 1 | 1 | 375 | 35 | 414 | 0.0 | 762 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1268580 | TR | TAZ |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1268580 | Msa1399990 | 0.839223 | 1.802038e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1268580 | MtrunA17_Chr5g0401281 | 97.554 | 368 | 9 | 0 | 8 | 375 | 8 | 375 | 0.0 | 753 |
| Msa1268580 | MtrunA17_Chr4g0058071 | 44.781 | 297 | 159 | 5 | 68 | 360 | 17 | 312 | 4.68e-83 | 257 |
| Msa1268580 | MtrunA17_Chr3g0116501 | 38.725 | 204 | 124 | 1 | 136 | 339 | 1 | 203 | 1.85e-50 | 168 |
| Msa1268580 | MtrunA17_Chr4g0000031 | 34.426 | 122 | 66 | 4 | 248 | 369 | 1598 | 1705 | 4.44e-15 | 77.4 |
| Msa1268580 | MtrunA17_Chr3g0125321 | 29.412 | 153 | 101 | 3 | 81 | 231 | 97 | 244 | 6.13e-13 | 68.2 |
| Msa1268580 | MtrunA17_Chr5g0438991 | 38.356 | 73 | 44 | 1 | 278 | 350 | 886 | 957 | 1.45e-12 | 69.3 |
| Msa1268580 | MtrunA17_Chr3g0138411 | 39.506 | 81 | 47 | 2 | 279 | 358 | 1119 | 1198 | 4.15e-12 | 67.8 |
| Msa1268580 | MtrunA17_Chr6g0456861 | 38.889 | 72 | 43 | 1 | 279 | 350 | 692 | 762 | 7.59e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1268580 | AT5G67480.1 | 65.000 | 360 | 114 | 2 | 16 | 374 | 20 | 368 | 1.24e-177 | 498 |
| Msa1268580 | AT5G67480.3 | 65.000 | 360 | 114 | 2 | 16 | 374 | 20 | 368 | 1.24e-177 | 498 |
| Msa1268580 | AT5G67480.2 | 65.000 | 360 | 114 | 2 | 16 | 374 | 31 | 379 | 1.74e-177 | 498 |
| Msa1268580 | AT4G37610.1 | 60.976 | 328 | 126 | 2 | 46 | 372 | 34 | 360 | 1.15e-149 | 427 |
| Msa1268580 | AT1G05690.1 | 49.861 | 361 | 167 | 4 | 9 | 365 | 1 | 351 | 1.14e-110 | 328 |
| Msa1268580 | AT3G48360.1 | 43.789 | 322 | 163 | 8 | 61 | 366 | 28 | 347 | 2.53e-79 | 248 |
| Msa1268580 | AT5G63160.1 | 43.770 | 313 | 163 | 7 | 66 | 366 | 24 | 335 | 8.80e-76 | 239 |
| Msa1268580 | AT3G48360.2 | 45.862 | 290 | 142 | 6 | 61 | 336 | 28 | 316 | 1.28e-73 | 232 |
| Msa1268580 | AT5G63160.2 | 46.099 | 282 | 140 | 6 | 66 | 336 | 24 | 304 | 2.95e-71 | 225 |
| Msa1268580 | AT5G63160.3 | 45.020 | 251 | 127 | 7 | 125 | 366 | 2 | 250 | 1.04e-59 | 194 |
| Msa1268580 | AT3G48360.3 | 44.033 | 243 | 122 | 7 | 136 | 366 | 1 | 241 | 1.33e-58 | 191 |
| Msa1268580 | AT1G79000.1 | 29.577 | 142 | 82 | 4 | 228 | 369 | 1570 | 1693 | 7.01e-15 | 77.0 |
| Msa1268580 | AT1G79000.3 | 29.577 | 142 | 82 | 4 | 228 | 369 | 1546 | 1669 | 7.45e-15 | 77.0 |
| Msa1268580 | AT1G79000.2 | 29.577 | 142 | 82 | 4 | 228 | 369 | 1570 | 1693 | 8.50e-15 | 76.6 |
| Msa1268580 | AT1G16710.2 | 28.873 | 142 | 83 | 4 | 228 | 369 | 1550 | 1673 | 1.14e-12 | 70.1 |
| Msa1268580 | AT1G16710.1 | 28.873 | 142 | 83 | 4 | 228 | 369 | 1579 | 1702 | 1.16e-12 | 70.1 |
| Msa1268580 | AT1G16710.3 | 28.873 | 142 | 83 | 4 | 228 | 369 | 1553 | 1676 | 1.17e-12 | 70.1 |
| Msa1268580 | AT1G16710.10 | 28.873 | 142 | 83 | 4 | 228 | 369 | 1553 | 1676 | 1.17e-12 | 70.1 |
| Msa1268580 | AT1G16710.8 | 28.873 | 142 | 83 | 4 | 228 | 369 | 1553 | 1676 | 1.17e-12 | 70.1 |
| Msa1268580 | AT1G16710.7 | 28.873 | 142 | 83 | 4 | 228 | 369 | 1553 | 1676 | 1.17e-12 | 70.1 |
| Msa1268580 | AT1G16710.6 | 28.873 | 142 | 83 | 4 | 228 | 369 | 1514 | 1637 | 1.25e-12 | 70.1 |
| Msa1268580 | AT1G16710.4 | 28.873 | 142 | 83 | 4 | 228 | 369 | 1514 | 1637 | 1.25e-12 | 70.1 |
| Msa1268580 | AT1G16710.5 | 28.873 | 142 | 83 | 4 | 228 | 369 | 1514 | 1637 | 1.25e-12 | 70.1 |
| Msa1268580 | AT3G12980.1 | 36.471 | 85 | 50 | 2 | 281 | 365 | 1581 | 1661 | 4.91e-11 | 65.1 |
| Msa1268580 | AT3G12980.2 | 36.471 | 85 | 50 | 2 | 281 | 365 | 1500 | 1580 | 5.05e-11 | 65.1 |
Find 99 sgRNAs with CRISPR-Local
Find 279 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGAAATTAGATGGACAATTT+TGG | 0.186306 | 8_3:+1651788 | Msa1268580:CDS |
| AATATATTGAAGATTGATTT+TGG | 0.190174 | 8_3:+1652098 | Msa1268580:three_prime_UTR |
| GGCGATCGATCTCAATCTTT+GGG | 0.258443 | 8_3:+1650418 | Msa1268580:CDS |
| TGGCGATCGATCTCAATCTT+TGG | 0.276993 | 8_3:+1650417 | Msa1268580:CDS |
| TTCGATATTTGTATTCTTCC+TGG | 0.281886 | 8_3:+1650469 | Msa1268580:CDS |
| TTTCTTTCAAGGTTAGATTA+AGG | 0.291505 | 8_3:+1647517 | Msa1268580:five_prime_UTR |
| TATTCCTTGAATTGAAAGTT+TGG | 0.294590 | 8_3:-1647494 | None:intergenic |
| CAATCTTCAATATATTGATT+TGG | 0.319165 | 8_3:-1652091 | None:intergenic |
| ATCTTGAAAACAAGAGGAAT+TGG | 0.329795 | 8_3:+1651819 | Msa1268580:CDS |
| AGAAAAGAAGAGAGGAATTC+CGG | 0.333093 | 8_3:-1647453 | None:intergenic |
| AAGCAATTCAAGCCCTTTGC+AGG | 0.347578 | 8_3:-1651508 | None:intergenic |
| CTGTCAGTGTAGTTGTTTGA+TGG | 0.354563 | 8_3:-1647335 | None:intergenic |
| ACTTCTTCTCTTTCTGTTTG+AGG | 0.357624 | 8_3:-1647417 | None:intergenic |
| AGTTCCAAACTTTCAATTCA+AGG | 0.358112 | 8_3:+1647490 | Msa1268580:five_prime_UTR |
| TTGGGATTGCACCATGCTTT+CGG | 0.361459 | 8_3:+1651838 | Msa1268580:CDS |
| AAAGAACTTCAAAACTGTTT+CGG | 0.374386 | 8_3:+1651129 | Msa1268580:CDS |
| AGTTCTAGAAAAGGAAATTC+TGG | 0.390373 | 8_3:+1651189 | Msa1268580:CDS |
| TTCAAGGAATATTTCTTTCA+AGG | 0.392170 | 8_3:+1647506 | Msa1268580:five_prime_UTR |
| CGCATACTCGCAAGGATAAC+CGG | 0.402463 | 8_3:-1649806 | None:intergenic |
| GCAAGAAAGACGAAATTAGA+TGG | 0.406485 | 8_3:+1651778 | Msa1268580:CDS |
| AAAGGAACTCTACAGAAATC+TGG | 0.408140 | 8_3:-1651633 | None:intergenic |
| TGTATTATTATAGTAAGAAA+TGG | 0.409631 | 8_3:+1651945 | Msa1268580:three_prime_UTR |
| ATGTGAACAGAAGCTAGAAT+TGG | 0.410891 | 8_3:+1651012 | Msa1268580:CDS |
| AGAGATGGTTGTCGAACTAT+TGG | 0.415706 | 8_3:+1651438 | Msa1268580:CDS |
| GGTTGCAAGTTGAGAGTCCC+TGG | 0.418562 | 8_3:+1651546 | Msa1268580:CDS |
| CTAGTTCACATTTGTAGAGA+TGG | 0.440223 | 8_3:+1651423 | Msa1268580:CDS |
| CGAGGCGAAGGAGGTGGTAT+CGG | 0.446905 | 8_3:-1649772 | None:intergenic |
| TCTGTAGAGTTCCTTTGTGC+AGG | 0.450851 | 8_3:+1651640 | Msa1268580:CDS |
| TCTTGAAAACAAGAGGAATT+GGG | 0.451569 | 8_3:+1651820 | Msa1268580:CDS |
| TTCAGCATGCCTCTCAATAC+AGG | 0.459183 | 8_3:-1650372 | None:intergenic |
| TGAGATCGATCGCCACCGAT+TGG | 0.468351 | 8_3:-1650409 | None:intergenic |
| GAAAAGAAGAGAGGAATTCC+GGG | 0.470148 | 8_3:-1647452 | None:intergenic |
| GGAATTTGTCCTACATTTGT+TGG | 0.476702 | 8_3:+1650949 | Msa1268580:CDS |
| GAGTCACCCAGTTCTAGAAA+AGG | 0.485308 | 8_3:+1651180 | Msa1268580:CDS |
| AGAACAAAATAAACAAATGT+TGG | 0.495391 | 8_3:-1652037 | None:intergenic |
| GTTTGCATTAATACTGATAA+CGG | 0.495992 | 8_3:+1649928 | Msa1268580:CDS |
| TGTGAACAGAAGCTAGAATT+GGG | 0.501782 | 8_3:+1651013 | Msa1268580:CDS |
| ACACAGCTGCTTCGCCCTCT+CGG | 0.509722 | 8_3:-1649847 | None:intergenic |
| GAGCAACAATTCATCCTTGA+GGG | 0.511620 | 8_3:-1651968 | None:intergenic |
| TTACGAGAAAGAAGAAATGA+AGG | 0.513436 | 8_3:+1650928 | Msa1268580:CDS |
| TCTGTTTGAGGAGATTTCTA+CGG | 0.513571 | 8_3:-1647405 | None:intergenic |
| TTCTGCAACAAGAGATCTGT+GGG | 0.515476 | 8_3:+1649873 | Msa1268580:CDS |
| TCGCCTCGATCAGCAGCAAC+CGG | 0.515743 | 8_3:+1649787 | Msa1268580:CDS |
| ATCTAATAGTTCTATATCCC+CGG | 0.516716 | 8_3:-1651880 | None:intergenic |
| GTTGCAAGTTGAGAGTCCCT+GGG | 0.520761 | 8_3:+1651547 | Msa1268580:CDS |
| CACATTCACGCTTCAAGTGA+GGG | 0.529306 | 8_3:-1650994 | None:intergenic |
| GTGCTCATTGCAAGAGGATG+TGG | 0.529329 | 8_3:+1651574 | Msa1268580:CDS |
| ATAAGCTGATGGCTAACATT+CGG | 0.529455 | 8_3:+1649731 | Msa1268580:CDS |
| CAAGAGGATGTGGCAACTGT+TGG | 0.537744 | 8_3:+1651584 | Msa1268580:CDS |
| ATTGATTGATCAGAGTAAGA+AGG | 0.539090 | 8_3:+1651338 | Msa1268580:intron |
| CTTTGAAGTCTTTATCATGC+GGG | 0.542449 | 8_3:-1651461 | None:intergenic |
| AAAACTGTTTCGGAGTCAGA+AGG | 0.543714 | 8_3:+1651139 | Msa1268580:CDS |
| GAGAAAGCACCAACAAATGT+AGG | 0.546221 | 8_3:-1650958 | None:intergenic |
| ATAGTAAGAAATGGCCCTCA+AGG | 0.546989 | 8_3:+1651954 | Msa1268580:three_prime_UTR |
| AGCAAGCAAATCGTTCCAAT+CGG | 0.549306 | 8_3:+1650394 | Msa1268580:CDS |
| GTTGCTGCTGATCGAGGCGA+AGG | 0.550246 | 8_3:-1649784 | None:intergenic |
| TTTGCAATTATACGATGCAA+TGG | 0.552736 | 8_3:+1651395 | Msa1268580:CDS |
| GTAGGTATACTTCCTGCAAA+GGG | 0.554458 | 8_3:+1651496 | Msa1268580:CDS |
| GCTGATCGAGGCGAAGGAGG+TGG | 0.554736 | 8_3:-1649778 | None:intergenic |
| AAGAAATGAGAAAAGAAGAG+AGG | 0.555753 | 8_3:-1647461 | None:intergenic |
| ATCAGTATTAATGCAAACAT+CGG | 0.559796 | 8_3:-1649923 | None:intergenic |
| AGGAAGTATACCTACACGGC+TGG | 0.561333 | 8_3:-1651488 | None:intergenic |
| GAAAAGATCTTGAAAACAAG+AGG | 0.566400 | 8_3:+1651813 | Msa1268580:CDS |
| GCTTTGAAGTCTTTATCATG+CGG | 0.567781 | 8_3:-1651462 | None:intergenic |
| TTCATCGCCGCATACTCGCA+AGG | 0.575928 | 8_3:-1649814 | None:intergenic |
| ATGAATAATTTATCACCGAG+AGG | 0.575964 | 8_3:+1649832 | Msa1268580:CDS |
| TTGTTTACTTTAAAGTAGAG+AGG | 0.577349 | 8_3:-1651990 | None:intergenic |
| TATAGTTCATTCAAAAGTAA+CGG | 0.582739 | 8_3:-1652065 | None:intergenic |
| GCTGCTGATCGAGGCGAAGG+AGG | 0.588376 | 8_3:-1649781 | None:intergenic |
| TGTAGGTATACTTCCTGCAA+AGG | 0.593266 | 8_3:+1651495 | Msa1268580:CDS |
| TTGATCAGAGTAAGAAGGAG+AGG | 0.595421 | 8_3:+1651343 | Msa1268580:intron |
| TCACATTCACGCTTCAAGTG+AGG | 0.596344 | 8_3:-1650995 | None:intergenic |
| AAGTAAACAATATATAGCAT+AGG | 0.599958 | 8_3:+1652003 | Msa1268580:three_prime_UTR |
| CGGTTATCCTTGCGAGTATG+CGG | 0.602040 | 8_3:+1649807 | Msa1268580:CDS |
| CTGTTTCGGAGTCAGAAGGA+TGG | 0.605228 | 8_3:+1651143 | Msa1268580:CDS |
| AAGCAAATCGTTCCAATCGG+TGG | 0.607764 | 8_3:+1650397 | Msa1268580:CDS |
| AGAAGTAATTCACATACCCC+CGG | 0.610334 | 8_3:+1647434 | Msa1268580:five_prime_UTR |
| TCAAAGCAAACCAGCCGTGT+AGG | 0.611970 | 8_3:+1651478 | Msa1268580:CDS |
| TGTCATTGTGGCCGAAAGCA+TGG | 0.612906 | 8_3:-1651849 | None:intergenic |
| TAACCGGTTGCTGCTGATCG+AGG | 0.614451 | 8_3:-1649790 | None:intergenic |
| AGCAATGAAGCATAAGCTGA+TGG | 0.617520 | 8_3:+1649720 | Msa1268580:exon |
| GGGGTTGTGCTCATTGCAAG+AGG | 0.622565 | 8_3:+1651568 | Msa1268580:CDS |
| AAAACTCGTACTGCATCATG+TGG | 0.623793 | 8_3:-1650444 | None:intergenic |
| GTGGCTTCTCCTGTATTGAG+AGG | 0.626268 | 8_3:+1650363 | Msa1268580:CDS |
| TACATCAACTAGATTATCCA+CGG | 0.627170 | 8_3:-1651044 | None:intergenic |
| GCGATCGATCTCAATCTTTG+GGG | 0.627705 | 8_3:+1650419 | Msa1268580:CDS |
| GGAGCAACAATTCATCCTTG+AGG | 0.635350 | 8_3:-1651969 | None:intergenic |
| CTTCTGCAACAAGAGATCTG+TGG | 0.636785 | 8_3:+1649872 | Msa1268580:CDS |
| TGAATAATTTATCACCGAGA+GGG | 0.647099 | 8_3:+1649833 | Msa1268580:CDS |
| TGCATTAATACTGATAACGG+TGG | 0.661014 | 8_3:+1649931 | Msa1268580:CDS |
| TTGCAAGTTGAGAGTCCCTG+GGG | 0.661286 | 8_3:+1651548 | Msa1268580:CDS |
| TAATATTGTTACCTGCACAA+AGG | 0.667930 | 8_3:-1651651 | None:intergenic |
| AAAAGAAGAGAGGAATTCCG+GGG | 0.681139 | 8_3:-1647451 | None:intergenic |
| AGAATTGGGTTTACTCACCG+TGG | 0.691467 | 8_3:+1651027 | Msa1268580:CDS |
| TTGCAGGAAGTATACCTACA+CGG | 0.699708 | 8_3:-1651492 | None:intergenic |
| TGCAAGTTGAGAGTCCCTGG+GGG | 0.717689 | 8_3:+1651549 | Msa1268580:CDS |
| CATTACTGTGTGATGCTCCG+CGG | 0.722450 | 8_3:+1651077 | Msa1268580:CDS |
| AAAGAAGAGAGGAATTCCGG+GGG | 0.742234 | 8_3:-1647450 | None:intergenic |
| TGACAAATGAGACTGAGCCG+CGG | 0.747022 | 8_3:-1651094 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTTAATTTCTAATGTT+TGG | - | chr8_3:1648635-1648654 | None:intergenic | 10.0% |
| !! | AAACATTAGAAATTAAAATA+AGG | + | chr8_3:1648634-1648653 | Msa1268580:intron | 10.0% |
| !! | CAATAACATATTAATATATA+AGG | + | chr8_3:1649244-1649263 | Msa1268580:intron | 10.0% |
| !! | TAAATAAGATTAAAATCTAA+GGG | - | chr8_3:1649428-1649447 | None:intergenic | 10.0% |
| !! | ATAAATAAGATTAAAATCTA+AGG | - | chr8_3:1649429-1649448 | None:intergenic | 10.0% |
| !! | AATAGTTATATAAATAGATA+AGG | - | chr8_3:1649665-1649684 | None:intergenic | 10.0% |
| !! | TAAAATACTTAAGTTTGATA+CGG | - | chr8_3:1648812-1648831 | None:intergenic | 15.0% |
| !!! | AAACTTAAGTATTTTATTCA+AGG | + | chr8_3:1648816-1648835 | Msa1268580:intron | 15.0% |
| !! | TAACTTAATCACATAATAAA+AGG | + | chr8_3:1649012-1649031 | Msa1268580:intron | 15.0% |
| !!! | TTTTTTTCCTTTCTTTTTTT+AGG | - | chr8_3:1649186-1649205 | None:intergenic | 15.0% |
| !! | TATCATAATCATACAATAAA+AGG | + | chr8_3:1649305-1649324 | Msa1268580:intron | 15.0% |
| !! | AACTTGTGATATTATAATAA+TGG | + | chr8_3:1649338-1649357 | Msa1268580:intron | 15.0% |
| !!! | TATGCAATTAATCTATTTTA+AGG | + | chr8_3:1650144-1650163 | Msa1268580:intron | 15.0% |
| !!! | TAACTTTAAGAAATTTCAAT+CGG | + | chr8_3:1650649-1650668 | Msa1268580:intron | 15.0% |
| !!! | AAAAAAAATTGAGTTTTGTT+TGG | + | chr8_3:1650753-1650772 | Msa1268580:intron | 15.0% |
| !!! | AAAAAAATTGAGTTTTGTTT+GGG | + | chr8_3:1650754-1650773 | Msa1268580:intron | 15.0% |
| !! | TTACACAATAATAGATAATT+AGG | + | chr8_3:1651290-1651309 | Msa1268580:intron | 15.0% |
| !! | TGTATTATTATAGTAAGAAA+TGG | + | chr8_3:1651945-1651964 | Msa1268580:three_prime_UTR | 15.0% |
| !!! | AATATATTGAAGATTGATTT+TGG | + | chr8_3:1652098-1652117 | Msa1268580:three_prime_UTR | 15.0% |
| !! | GAAAGAAATCTTAATTGAAA+TGG | - | chr8_3:1647567-1647586 | None:intergenic | 20.0% |
| !! | AATTCAACTAATAGTGTTTA+GGG | - | chr8_3:1648242-1648261 | None:intergenic | 20.0% |
| !! | AACAAAACAATTGTCAATTT+AGG | + | chr8_3:1648516-1648535 | Msa1268580:intron | 20.0% |
| !! | ATCTAACAATAAAACATAAG+AGG | + | chr8_3:1648607-1648626 | Msa1268580:intron | 20.0% |
| !!! | TTGCTTTTTTATTTGAATGT+GGG | - | chr8_3:1648662-1648681 | None:intergenic | 20.0% |
| !!! | TTTGCTTTTTTATTTGAATG+TGG | - | chr8_3:1648663-1648682 | None:intergenic | 20.0% |
| !!! | TTCATTTTATAGAAGAATGT+GGG | - | chr8_3:1648695-1648714 | None:intergenic | 20.0% |
| !!! | TTATTTCTACATGATATGAA+TGG | - | chr8_3:1648894-1648913 | None:intergenic | 20.0% |
| !!! | AGCTTATCTTTAATTCTTTT+TGG | + | chr8_3:1648973-1648992 | Msa1268580:intron | 20.0% |
| !! | GTTAAATGTCATATAATATG+TGG | - | chr8_3:1649045-1649064 | None:intergenic | 20.0% |
| !!! | TTATTGGCTAACATTAATTT+CGG | + | chr8_3:1649513-1649532 | Msa1268580:intron | 20.0% |
| !!! | TTTTATTCTGCTGAAATTAA+GGG | - | chr8_3:1649628-1649647 | None:intergenic | 20.0% |
| !!! | TTTTTATTCTGCTGAAATTA+AGG | - | chr8_3:1649629-1649648 | None:intergenic | 20.0% |
| !! | ATTTCAGCAGAATAAAAAAA+AGG | + | chr8_3:1649631-1649650 | Msa1268580:intron | 20.0% |
| !!! | ATGATTTTGAGGTTTATAAA+GGG | - | chr8_3:1650505-1650524 | None:intergenic | 20.0% |
| !!! | TATGATTTTGAGGTTTATAA+AGG | - | chr8_3:1650506-1650525 | None:intergenic | 20.0% |
| !! | ATTTCTTAAAGTTATCCTAT+CGG | - | chr8_3:1650643-1650662 | None:intergenic | 20.0% |
| !!! | AAAAAATTGAGTTTTGTTTG+GGG | + | chr8_3:1650755-1650774 | Msa1268580:intron | 20.0% |
| !!! | TGAAGTTCTTTAGTATTTTA+CGG | - | chr8_3:1651120-1651139 | None:intergenic | 20.0% |
| !! | AAGTAAACAATATATAGCAT+AGG | + | chr8_3:1652003-1652022 | Msa1268580:three_prime_UTR | 20.0% |
| !! | AGAACAAAATAAACAAATGT+TGG | - | chr8_3:1652040-1652059 | None:intergenic | 20.0% |
| !! | TATAGTTCATTCAAAAGTAA+CGG | - | chr8_3:1652068-1652087 | None:intergenic | 20.0% |
| !!! | TTACTTTTGAATGAACTATA+TGG | + | chr8_3:1652068-1652087 | Msa1268580:three_prime_UTR | 20.0% |
| !!! | CAATCTTCAATATATTGATT+TGG | - | chr8_3:1652094-1652113 | None:intergenic | 20.0% |
| ! | TATTCCTTGAATTGAAAGTT+TGG | - | chr8_3:1647497-1647516 | None:intergenic | 25.0% |
| ! | TTCAAGGAATATTTCTTTCA+AGG | + | chr8_3:1647506-1647525 | Msa1268580:five_prime_UTR | 25.0% |
| ! | TTTCTTTCAAGGTTAGATTA+AGG | + | chr8_3:1647517-1647536 | Msa1268580:five_prime_UTR | 25.0% |
| !! | AGATTAATTCGTTGATTATC+TGG | + | chr8_3:1647688-1647707 | Msa1268580:intron | 25.0% |
| !! | GTTTTTGTAGATTCTTGATT+TGG | + | chr8_3:1647716-1647735 | Msa1268580:intron | 25.0% |
| ! | TATTTACCTTACTGTATGTT+TGG | + | chr8_3:1647906-1647925 | Msa1268580:intron | 25.0% |
| !! | TATATCATTGATTGCATGTT+TGG | - | chr8_3:1648059-1648078 | None:intergenic | 25.0% |
| ! | ATACGAAACAGAAACTATTT+GGG | - | chr8_3:1648165-1648184 | None:intergenic | 25.0% |
| ! | TATACGAAACAGAAACTATT+TGG | - | chr8_3:1648166-1648185 | None:intergenic | 25.0% |
| !! | GTTTGAGACTTTAAGTAAAT+AGG | + | chr8_3:1648207-1648226 | Msa1268580:intron | 25.0% |
| ! | GAATTCAACTAATAGTGTTT+AGG | - | chr8_3:1648243-1648262 | None:intergenic | 25.0% |
| ! | ATTGACATGTTACAATTTCA+AGG | - | chr8_3:1648297-1648316 | None:intergenic | 25.0% |
| !! | CTTCATTTTATAGAAGAATG+TGG | - | chr8_3:1648696-1648715 | None:intergenic | 25.0% |
| !!! | TGAAGACTCAATTTTGTTAT+CGG | + | chr8_3:1648711-1648730 | Msa1268580:intron | 25.0% |
| !! | ATTTTTACTCTTTCTCTCTT+TGG | - | chr8_3:1648760-1648779 | None:intergenic | 25.0% |
| !!! | AGGTATGTATTTTGATAAAG+AGG | + | chr8_3:1648862-1648881 | Msa1268580:intron | 25.0% |
| ! | ATTTACAATTGTAACTTACG+AGG | + | chr8_3:1648914-1648933 | Msa1268580:intron | 25.0% |
| ! | AGATAAGCTATATTACAAGT+AGG | - | chr8_3:1648962-1648981 | None:intergenic | 25.0% |
| ! | CATTTAACTGAATAGCTTAT+CGG | + | chr8_3:1649057-1649076 | Msa1268580:intron | 25.0% |
| ! | TTATCCAAATCTATGTGTAA+TGG | + | chr8_3:1649280-1649299 | Msa1268580:intron | 25.0% |
| ! | AAAATGCTAGATATCAAGAA+TGG | + | chr8_3:1649361-1649380 | Msa1268580:intron | 25.0% |
| !! | TATTGGCTAACATTAATTTC+GGG | + | chr8_3:1649514-1649533 | Msa1268580:intron | 25.0% |
| !! | AATTCTTTTCATTCAGTAGT+TGG | + | chr8_3:1649592-1649611 | Msa1268580:intron | 25.0% |
| ! | ATCAGTATTAATGCAAACAT+CGG | - | chr8_3:1649926-1649945 | None:intergenic | 25.0% |
| ! | GTTTGCATTAATACTGATAA+CGG | + | chr8_3:1649928-1649947 | Msa1268580:CDS | 25.0% |
| ! | TCACTTTATACTATATGATC+AGG | + | chr8_3:1650338-1650357 | Msa1268580:intron | 25.0% |
| !! | CAAACATTCTTATGATTTTG+AGG | - | chr8_3:1650516-1650535 | None:intergenic | 25.0% |
| ! | AACTGTGAAATTGAAACAAA+TGG | + | chr8_3:1650725-1650744 | Msa1268580:intron | 25.0% |
| !!! | AAAAATTGAGTTTTGTTTGG+GGG | + | chr8_3:1650756-1650775 | Msa1268580:intron | 25.0% |
| ! | AAAGAACTTCAAAACTGTTT+CGG | + | chr8_3:1651129-1651148 | Msa1268580:CDS | 25.0% |
| ! | TGATTGAAGAAGAAAATGTA+AGG | + | chr8_3:1651218-1651237 | Msa1268580:intron | 25.0% |
| ! | ATTCAAAAGTAGTTAGACAA+TGG | - | chr8_3:1651316-1651335 | None:intergenic | 25.0% |
| ! | TGATTGTATTTATTTCAGCT+CGG | + | chr8_3:1651689-1651708 | Msa1268580:intron | 25.0% |
| !! | GTAACAAATCTTTTCATTTC+AGG | + | chr8_3:1651727-1651746 | Msa1268580:intron | 25.0% |
| !!! | TTGTTTACTTTAAAGTAGAG+AGG | - | chr8_3:1651993-1652012 | None:intergenic | 25.0% |
| AAGAAATGAGAAAAGAAGAG+AGG | - | chr8_3:1647464-1647483 | None:intergenic | 30.0% | |
| AGTTCCAAACTTTCAATTCA+AGG | + | chr8_3:1647490-1647509 | Msa1268580:five_prime_UTR | 30.0% | |
| !! | ATTCGTTGATTATCTGGTTT+TGG | + | chr8_3:1647694-1647713 | Msa1268580:intron | 30.0% |
| ACTTCATGTTGAGATTTACA+TGG | + | chr8_3:1647845-1647864 | Msa1268580:intron | 30.0% | |
| TTAGAGCTTCAATAGAATCA+AGG | - | chr8_3:1647978-1647997 | None:intergenic | 30.0% | |
| TATTGTAATTCTGCCAAACT+CGG | + | chr8_3:1648026-1648045 | Msa1268580:intron | 30.0% | |
| TCTTAGTGATCAATAGTTTC+TGG | + | chr8_3:1648107-1648126 | Msa1268580:intron | 30.0% | |
| CTTAGTGATCAATAGTTTCT+GGG | + | chr8_3:1648108-1648127 | Msa1268580:intron | 30.0% | |
| GTCTCAAACAAATGTACAAT+AGG | - | chr8_3:1648196-1648215 | None:intergenic | 30.0% | |
| GTCAATCAAAATAGTCCTTA+TGG | + | chr8_3:1648311-1648330 | Msa1268580:intron | 30.0% | |
| TAACAGGTAAACTTACCATA+AGG | - | chr8_3:1648329-1648348 | None:intergenic | 30.0% | |
| ! | CTGCATGCTATAATTTTGTA+TGG | + | chr8_3:1648431-1648450 | Msa1268580:intron | 30.0% |
| GTAAAGCATAGAATTTACCT+TGG | + | chr8_3:1648453-1648472 | Msa1268580:intron | 30.0% | |
| !! | TTACCTTGGCTTTAAGATTT+AGG | + | chr8_3:1648467-1648486 | Msa1268580:intron | 30.0% |
| TTTCCTAAATCTTAAAGCCA+AGG | - | chr8_3:1648473-1648492 | None:intergenic | 30.0% | |
| AACAATTGTCAATTTAGGTC+TGG | + | chr8_3:1648521-1648540 | Msa1268580:intron | 30.0% | |
| !! | ACTCAATTTTGTTATCGGTA+TGG | + | chr8_3:1648716-1648735 | Msa1268580:intron | 30.0% |
| AGCTATATTACAAGTAGGTT+TGG | - | chr8_3:1648957-1648976 | None:intergenic | 30.0% | |
| !!! | TTTTTTAGGTACCATGCTAT+TGG | - | chr8_3:1649172-1649191 | None:intergenic | 30.0% |
| CATGGTACCTAAAAAAAGAA+AGG | + | chr8_3:1649176-1649195 | Msa1268580:intron | 30.0% | |
| CATGATATACTTCAACTCTT+TGG | - | chr8_3:1649212-1649231 | None:intergenic | 30.0% | |
| CACATAGATTTGGATAAGAT+TGG | - | chr8_3:1649277-1649296 | None:intergenic | 30.0% | |
| TAAGCCATTACACATAGATT+TGG | - | chr8_3:1649287-1649306 | None:intergenic | 30.0% | |
| TGATGAATTCAAGAATGACA+TGG | + | chr8_3:1649391-1649410 | Msa1268580:intron | 30.0% | |
| ATGAATAATTTATCACCGAG+AGG | + | chr8_3:1649832-1649851 | Msa1268580:CDS | 30.0% | |
| TGAATAATTTATCACCGAGA+GGG | + | chr8_3:1649833-1649852 | Msa1268580:CDS | 30.0% | |
| TCTTTGAACGAATTAGTAGT+AGG | + | chr8_3:1650089-1650108 | Msa1268580:intron | 30.0% | |
| ! | AGTAGGCTCAAAATTTTCAT+AGG | + | chr8_3:1650106-1650125 | Msa1268580:intron | 30.0% |
| CTTTATACTATATGATCAGG+CGG | + | chr8_3:1650341-1650360 | Msa1268580:intron | 30.0% | |
| TTCGATATTTGTATTCTTCC+TGG | + | chr8_3:1650469-1650488 | Msa1268580:CDS | 30.0% | |
| TTTGTCTCCTTGTACTATAT+GGG | + | chr8_3:1650532-1650551 | Msa1268580:intron | 30.0% | |
| TAAGAAATTTCAATCGGTAG+TGG | + | chr8_3:1650655-1650674 | Msa1268580:intron | 30.0% | |
| TACTTCGAAATTGATCTACT+CGG | - | chr8_3:1650701-1650720 | None:intergenic | 30.0% | |
| !!! | AAAATTGAGTTTTGTTTGGG+GGG | + | chr8_3:1650757-1650776 | Msa1268580:intron | 30.0% |
| TTACGAGAAAGAAGAAATGA+AGG | + | chr8_3:1650928-1650947 | Msa1268580:CDS | 30.0% | |
| TACATCAACTAGATTATCCA+CGG | - | chr8_3:1651047-1651066 | None:intergenic | 30.0% | |
| !!! | GAATTTCCTTTTCTAGAACT+GGG | - | chr8_3:1651189-1651208 | None:intergenic | 30.0% |
| !!! | AGAATTTCCTTTTCTAGAAC+TGG | - | chr8_3:1651190-1651209 | None:intergenic | 30.0% |
| !! | AGTTCTAGAAAAGGAAATTC+TGG | + | chr8_3:1651189-1651208 | Msa1268580:CDS | 30.0% |
| ATTGATTGATCAGAGTAAGA+AGG | + | chr8_3:1651338-1651357 | Msa1268580:intron | 30.0% | |
| CAGAAAAATGAATGAAAGAG+AGG | + | chr8_3:1651368-1651387 | Msa1268580:CDS | 30.0% | |
| TTTGCAATTATACGATGCAA+TGG | + | chr8_3:1651395-1651414 | Msa1268580:CDS | 30.0% | |
| TAATATTGTTACCTGCACAA+AGG | - | chr8_3:1651654-1651673 | None:intergenic | 30.0% | |
| ! | CGAAATTAGATGGACAATTT+TGG | + | chr8_3:1651788-1651807 | Msa1268580:CDS | 30.0% |
| GAAAAGATCTTGAAAACAAG+AGG | + | chr8_3:1651813-1651832 | Msa1268580:CDS | 30.0% | |
| ATCTTGAAAACAAGAGGAAT+TGG | + | chr8_3:1651819-1651838 | Msa1268580:CDS | 30.0% | |
| TCTTGAAAACAAGAGGAATT+GGG | + | chr8_3:1651820-1651839 | Msa1268580:CDS | 30.0% | |
| ! | ATCTAATAGTTCTATATCCC+CGG | - | chr8_3:1651883-1651902 | None:intergenic | 30.0% |
| TCTGTTTGAGGAGATTTCTA+CGG | - | chr8_3:1647408-1647427 | None:intergenic | 35.0% | |
| ACTTCTTCTCTTTCTGTTTG+AGG | - | chr8_3:1647420-1647439 | None:intergenic | 35.0% | |
| AGAAAAGAAGAGAGGAATTC+CGG | - | chr8_3:1647456-1647475 | None:intergenic | 35.0% | |
| GATTTCTTTCTCGTAATGCA+AGG | + | chr8_3:1647577-1647596 | Msa1268580:intron | 35.0% | |
| CTTGAATTGTGATCATGCAA+TGG | + | chr8_3:1647808-1647827 | Msa1268580:intron | 35.0% | |
| TTACTGTATGTTTGGATCAG+CGG | + | chr8_3:1647914-1647933 | Msa1268580:intron | 35.0% | |
| ATAGCTTCTGTCAATTACAG+TGG | + | chr8_3:1648001-1648020 | Msa1268580:intron | 35.0% | |
| ATTGCTAGTTGGACAAAGTT+AGG | - | chr8_3:1648269-1648288 | None:intergenic | 35.0% | |
| AGTTTACCTGTTAGACAACA+TGG | + | chr8_3:1648336-1648355 | Msa1268580:intron | 35.0% | |
| GAAAATGTGGCAAATCTACA+TGG | - | chr8_3:1648568-1648587 | None:intergenic | 35.0% | |
| ACGTTGTACGTTAGAAAATG+TGG | - | chr8_3:1648581-1648600 | None:intergenic | 35.0% | |
| ATTGTAACTTACGAGGAAAG+TGG | + | chr8_3:1648921-1648940 | Msa1268580:intron | 35.0% | |
| AACTGAATAGCTTATCGGAA+TGG | + | chr8_3:1649062-1649081 | Msa1268580:intron | 35.0% | |
| AATAGCTTATCGGAATGGAA+GGG | + | chr8_3:1649067-1649086 | Msa1268580:intron | 35.0% | |
| GAAGTAATGTACCAATAGCA+TGG | + | chr8_3:1649158-1649177 | Msa1268580:intron | 35.0% | |
| ATAAGCTGATGGCTAACATT+CGG | + | chr8_3:1649731-1649750 | Msa1268580:CDS | 35.0% | |
| !! | TGCATTAATACTGATAACGG+TGG | + | chr8_3:1649931-1649950 | Msa1268580:CDS | 35.0% |
| ! | CATCCCACTTGATTTTGAAT+AGG | + | chr8_3:1649993-1650012 | Msa1268580:intron | 35.0% |
| GTGCCTATTCAAAATCAAGT+GGG | - | chr8_3:1649999-1650018 | None:intergenic | 35.0% | |
| ! | CACTTGATTTTGAATAGGCA+CGG | + | chr8_3:1649998-1650017 | Msa1268580:intron | 35.0% |
| !! | GAAATTTTGATGTACCTAGC+CGG | - | chr8_3:1650030-1650049 | None:intergenic | 35.0% |
| ATAAAGGGAACAAACATACC+AGG | - | chr8_3:1650490-1650509 | None:intergenic | 35.0% | |
| GTTTGTCTCCTTGTACTATA+TGG | + | chr8_3:1650531-1650550 | Msa1268580:intron | 35.0% | |
| ! | GTAGGCTTGATAATATTCTC+TGG | + | chr8_3:1650554-1650573 | Msa1268580:intron | 35.0% |
| GGAATTTGTCCTACATTTGT+TGG | + | chr8_3:1650949-1650968 | Msa1268580:CDS | 35.0% | |
| ATGTGAACAGAAGCTAGAAT+TGG | + | chr8_3:1651012-1651031 | Msa1268580:CDS | 35.0% | |
| TGTGAACAGAAGCTAGAATT+GGG | + | chr8_3:1651013-1651032 | Msa1268580:CDS | 35.0% | |
| CTAGTTCACATTTGTAGAGA+TGG | + | chr8_3:1651423-1651442 | Msa1268580:CDS | 35.0% | |
| !! | CTTTGAAGTCTTTATCATGC+GGG | - | chr8_3:1651464-1651483 | None:intergenic | 35.0% |
| !! | GCTTTGAAGTCTTTATCATG+CGG | - | chr8_3:1651465-1651484 | None:intergenic | 35.0% |
| AAAGGAACTCTACAGAAATC+TGG | - | chr8_3:1651636-1651655 | None:intergenic | 35.0% | |
| GCAAGAAAGACGAAATTAGA+TGG | + | chr8_3:1651778-1651797 | Msa1268580:CDS | 35.0% | |
| ! | CCACAATGACAATCTTTTTC+CGG | + | chr8_3:1651861-1651880 | Msa1268580:exon | 35.0% |
| ! | CACAATGACAATCTTTTTCC+GGG | + | chr8_3:1651862-1651881 | Msa1268580:exon | 35.0% |
| ! | ACAATGACAATCTTTTTCCG+GGG | + | chr8_3:1651863-1651882 | Msa1268580:exon | 35.0% |
| CTGTCAGTGTAGTTGTTTGA+TGG | - | chr8_3:1647338-1647357 | None:intergenic | 40.0% | |
| AGAAGTAATTCACATACCCC+CGG | + | chr8_3:1647434-1647453 | Msa1268580:five_prime_UTR | 40.0% | |
| AAAAGAAGAGAGGAATTCCG+GGG | - | chr8_3:1647454-1647473 | None:intergenic | 40.0% | |
| GAAAAGAAGAGAGGAATTCC+GGG | - | chr8_3:1647455-1647474 | None:intergenic | 40.0% | |
| GCTGATCCAAACATACAGTA+AGG | - | chr8_3:1647915-1647934 | None:intergenic | 40.0% | |
| TCAAGGTCGAAATTGCTAGT+TGG | - | chr8_3:1648280-1648299 | None:intergenic | 40.0% | |
| GAATAGCTTATCGGAATGGA+AGG | + | chr8_3:1649066-1649085 | Msa1268580:intron | 40.0% | |
| ATAGCTTATCGGAATGGAAG+GGG | + | chr8_3:1649068-1649087 | Msa1268580:intron | 40.0% | |
| TTACGGTGACAAATCGCAAT+CGG | - | chr8_3:1649129-1649148 | None:intergenic | 40.0% | |
| TTGCGATTTGTCACCGTAAA+AGG | + | chr8_3:1649130-1649149 | Msa1268580:intron | 40.0% | |
| ! | ATTACTTCCACCGCCTTTTA+CGG | - | chr8_3:1649146-1649165 | None:intergenic | 40.0% |
| TAGCCAATAAAATCTCAGCC+TGG | - | chr8_3:1649503-1649522 | None:intergenic | 40.0% | |
| AGCAATGAAGCATAAGCTGA+TGG | + | chr8_3:1649720-1649739 | Msa1268580:exon | 40.0% | |
| TTCTGCAACAAGAGATCTGT+GGG | + | chr8_3:1649873-1649892 | Msa1268580:CDS | 40.0% | |
| CGTGCCTATTCAAAATCAAG+TGG | - | chr8_3:1650000-1650019 | None:intergenic | 40.0% | |
| TATACTATATGATCAGGCGG+TGG | + | chr8_3:1650344-1650363 | Msa1268580:intron | 40.0% | |
| AGCAAGCAAATCGTTCCAAT+CGG | + | chr8_3:1650394-1650413 | Msa1268580:CDS | 40.0% | |
| AAAACTCGTACTGCATCATG+TGG | - | chr8_3:1650447-1650466 | None:intergenic | 40.0% | |
| TCTCCTTGTACTATATGGGT+AGG | + | chr8_3:1650536-1650555 | Msa1268580:intron | 40.0% | |
| AAGCCTACCCATATAGTACA+AGG | - | chr8_3:1650542-1650561 | None:intergenic | 40.0% | |
| TACATCCATTCATTGCCGAT+AGG | + | chr8_3:1650625-1650644 | Msa1268580:intron | 40.0% | |
| GTTATCCTATCGGCAATGAA+TGG | - | chr8_3:1650633-1650652 | None:intergenic | 40.0% | |
| ATTGATCTACTCGGTTTAGC+TGG | - | chr8_3:1650692-1650711 | None:intergenic | 40.0% | |
| GAGATCAACATAGCTGATCA+AGG | + | chr8_3:1650788-1650807 | Msa1268580:intron | 40.0% | |
| !! | GAGAAAGCACCAACAAATGT+AGG | - | chr8_3:1650961-1650980 | None:intergenic | 40.0% |
| AAAACTGTTTCGGAGTCAGA+AGG | + | chr8_3:1651139-1651158 | Msa1268580:CDS | 40.0% | |
| TTGATCAGAGTAAGAAGGAG+AGG | + | chr8_3:1651343-1651362 | Msa1268580:intron | 40.0% | |
| AGAGATGGTTGTCGAACTAT+TGG | + | chr8_3:1651438-1651457 | Msa1268580:CDS | 40.0% | |
| ! | TTGCAGGAAGTATACCTACA+CGG | - | chr8_3:1651495-1651514 | None:intergenic | 40.0% |
| TGTAGGTATACTTCCTGCAA+AGG | + | chr8_3:1651495-1651514 | Msa1268580:CDS | 40.0% | |
| GTAGGTATACTTCCTGCAAA+GGG | + | chr8_3:1651496-1651515 | Msa1268580:CDS | 40.0% | |
| !! | TTGCTTGTTCGTCATTTTGC+TGG | + | chr8_3:1651525-1651544 | Msa1268580:CDS | 40.0% |
| CCGGAAAAAGATTGTCATTG+TGG | - | chr8_3:1651864-1651883 | None:intergenic | 40.0% | |
| ATAGTAAGAAATGGCCCTCA+AGG | + | chr8_3:1651954-1651973 | Msa1268580:three_prime_UTR | 40.0% | |
| GAGCAACAATTCATCCTTGA+GGG | - | chr8_3:1651971-1651990 | None:intergenic | 40.0% | |
| AAAGAAGAGAGGAATTCCGG+GGG | - | chr8_3:1647453-1647472 | None:intergenic | 45.0% | |
| GTTTGGATTGACACCGAGTT+TGG | - | chr8_3:1648042-1648061 | None:intergenic | 45.0% | |
| ! | GCATTGTTGTTGGGTACACA+TGG | - | chr8_3:1648390-1648409 | None:intergenic | 45.0% |
| AGCATGCAGCAATTTCATCC+TGG | - | chr8_3:1648420-1648439 | None:intergenic | 45.0% | |
| CGATTTGTCACCGTAAAAGG+CGG | + | chr8_3:1649133-1649152 | Msa1268580:intron | 45.0% | |
| CAATAAAATCTCAGCCTGGC+CGG | - | chr8_3:1649499-1649518 | None:intergenic | 45.0% | |
| CTTCTGCAACAAGAGATCTG+TGG | + | chr8_3:1649872-1649891 | Msa1268580:CDS | 45.0% | |
| !!! | TGGGAGCGTCTTTTCAATGA+AGG | + | chr8_3:1649892-1649911 | Msa1268580:CDS | 45.0% |
| !!! | GGGAGCGTCTTTTCAATGAA+GGG | + | chr8_3:1649893-1649912 | Msa1268580:CDS | 45.0% |
| CTCTTAAGCAGTGACATCTG+TGG | - | chr8_3:1650170-1650189 | None:intergenic | 45.0% | |
| TTCAGCATGCCTCTCAATAC+AGG | - | chr8_3:1650375-1650394 | None:intergenic | 45.0% | |
| AAGCAAATCGTTCCAATCGG+TGG | + | chr8_3:1650397-1650416 | Msa1268580:CDS | 45.0% | |
| TGGCGATCGATCTCAATCTT+TGG | + | chr8_3:1650417-1650436 | Msa1268580:CDS | 45.0% | |
| GGCGATCGATCTCAATCTTT+GGG | + | chr8_3:1650418-1650437 | Msa1268580:CDS | 45.0% | |
| GCGATCGATCTCAATCTTTG+GGG | + | chr8_3:1650419-1650438 | Msa1268580:CDS | 45.0% | |
| !!! | ATTGAGTTTTGTTTGGGGGG+TGG | + | chr8_3:1650760-1650779 | Msa1268580:intron | 45.0% |
| !!! | TTGAGTTTTGTTTGGGGGGT+GGG | + | chr8_3:1650761-1650780 | Msa1268580:intron | 45.0% |
| CACATTCACGCTTCAAGTGA+GGG | - | chr8_3:1650997-1651016 | None:intergenic | 45.0% | |
| TCACATTCACGCTTCAAGTG+AGG | - | chr8_3:1650998-1651017 | None:intergenic | 45.0% | |
| AGAATTGGGTTTACTCACCG+TGG | + | chr8_3:1651027-1651046 | Msa1268580:CDS | 45.0% | |
| !! | GAGTCACCCAGTTCTAGAAA+AGG | + | chr8_3:1651180-1651199 | Msa1268580:CDS | 45.0% |
| AAGCAATTCAAGCCCTTTGC+AGG | - | chr8_3:1651511-1651530 | None:intergenic | 45.0% | |
| TCTGTAGAGTTCCTTTGTGC+AGG | + | chr8_3:1651640-1651659 | Msa1268580:CDS | 45.0% | |
| TTGGGATTGCACCATGCTTT+CGG | + | chr8_3:1651838-1651857 | Msa1268580:CDS | 45.0% | |
| GGAGCAACAATTCATCCTTG+AGG | - | chr8_3:1651972-1651991 | None:intergenic | 45.0% | |
| !!! | TTTTTATTTTACTAAATTTA+AGG | + | chr8_3:1648842-1648861 | Msa1268580:intron | 5.0% |
| !! | AACAAAAAAATTAATAATTA+AGG | - | chr8_3:1651257-1651276 | None:intergenic | 5.0% |
| GTTTGGATCAGCGGTGAGTT+TGG | + | chr8_3:1647923-1647942 | Msa1268580:intron | 50.0% | |
| CGTCGTCCATGTTGTCTAAC+AGG | - | chr8_3:1648345-1648364 | None:intergenic | 50.0% | |
| ! | GGAGACGTGGCATTGTTGTT+GGG | - | chr8_3:1648399-1648418 | None:intergenic | 50.0% |
| TGGAGACGTGGCATTGTTGT+TGG | - | chr8_3:1648400-1648419 | None:intergenic | 50.0% | |
| AACAACAATGCCACGTCTCC+AGG | + | chr8_3:1648399-1648418 | Msa1268580:intron | 50.0% | |
| GCAATTTCATCCTGGAGACG+TGG | - | chr8_3:1648412-1648431 | None:intergenic | 50.0% | |
| TCTGGAGATGTGCAGTCATG+TGG | + | chr8_3:1648539-1648558 | Msa1268580:intron | 50.0% | |
| AATCGCAATCGGAGAACCTG+TGG | - | chr8_3:1649118-1649137 | None:intergenic | 50.0% | |
| TTTGTCACCGTAAAAGGCGG+TGG | + | chr8_3:1649136-1649155 | Msa1268580:intron | 50.0% | |
| ! | CGGCCAGGCTGAGATTTTAT+TGG | + | chr8_3:1649497-1649516 | Msa1268580:intron | 50.0% |
| CGCATACTCGCAAGGATAAC+CGG | - | chr8_3:1649809-1649828 | None:intergenic | 50.0% | |
| CGGTTATCCTTGCGAGTATG+CGG | + | chr8_3:1649807-1649826 | Msa1268580:CDS | 50.0% | |
| GTGGCTTCTCCTGTATTGAG+AGG | + | chr8_3:1650363-1650382 | Msa1268580:CDS | 50.0% | |
| TCTACTCGGTTTAGCTGGTG+AGG | - | chr8_3:1650687-1650706 | None:intergenic | 50.0% | |
| !!! | TGAGTTTTGTTTGGGGGGTG+GGG | + | chr8_3:1650762-1650781 | Msa1268580:intron | 50.0% |
| CATTACTGTGTGATGCTCCG+CGG | + | chr8_3:1651077-1651096 | Msa1268580:CDS | 50.0% | |
| TGACAAATGAGACTGAGCCG+CGG | - | chr8_3:1651097-1651116 | None:intergenic | 50.0% | |
| CTGTTTCGGAGTCAGAAGGA+TGG | + | chr8_3:1651143-1651162 | Msa1268580:CDS | 50.0% | |
| TCAAAGCAAACCAGCCGTGT+AGG | + | chr8_3:1651478-1651497 | Msa1268580:CDS | 50.0% | |
| ! | AGGAAGTATACCTACACGGC+TGG | - | chr8_3:1651491-1651510 | None:intergenic | 50.0% |
| ! | GTTGCAAGTTGAGAGTCCCT+GGG | + | chr8_3:1651547-1651566 | Msa1268580:CDS | 50.0% |
| ! | TTGCAAGTTGAGAGTCCCTG+GGG | + | chr8_3:1651548-1651567 | Msa1268580:CDS | 50.0% |
| GTGCTCATTGCAAGAGGATG+TGG | + | chr8_3:1651574-1651593 | Msa1268580:CDS | 50.0% | |
| CAAGAGGATGTGGCAACTGT+TGG | + | chr8_3:1651584-1651603 | Msa1268580:CDS | 50.0% | |
| TGTCATTGTGGCCGAAAGCA+TGG | - | chr8_3:1651852-1651871 | None:intergenic | 50.0% | |
| ACCTGTGGAGCACACAAGGT+GGG | - | chr8_3:1649103-1649122 | None:intergenic | 55.0% | |
| AACCTGTGGAGCACACAAGG+TGG | - | chr8_3:1649104-1649123 | None:intergenic | 55.0% | |
| GAGAACCTGTGGAGCACACA+AGG | - | chr8_3:1649107-1649126 | None:intergenic | 55.0% | |
| ACCCACCACCCCATGATTTC+CGG | + | chr8_3:1649477-1649496 | Msa1268580:intron | 55.0% | |
| TCAGCCTGGCCGGAAATCAT+GGG | - | chr8_3:1649489-1649508 | None:intergenic | 55.0% | |
| TAACCGGTTGCTGCTGATCG+AGG | - | chr8_3:1649793-1649812 | None:intergenic | 55.0% | |
| TTCATCGCCGCATACTCGCA+AGG | - | chr8_3:1649817-1649836 | None:intergenic | 55.0% | |
| TGAATAGGCACGGATGCTGC+CGG | + | chr8_3:1650008-1650027 | Msa1268580:intron | 55.0% | |
| TGAGATCGATCGCCACCGAT+TGG | - | chr8_3:1650412-1650431 | None:intergenic | 55.0% | |
| !!! | GAGTTTTGTTTGGGGGGTGG+GGG | + | chr8_3:1650763-1650782 | Msa1268580:intron | 55.0% |
| ! | GGTTGCAAGTTGAGAGTCCC+TGG | + | chr8_3:1651546-1651565 | Msa1268580:CDS | 55.0% |
| ! | TGCAAGTTGAGAGTCCCTGG+GGG | + | chr8_3:1651549-1651568 | Msa1268580:CDS | 55.0% |
| TGCAATGAGCACAACCCCCA+GGG | - | chr8_3:1651566-1651585 | None:intergenic | 55.0% | |
| TTGCAATGAGCACAACCCCC+AGG | - | chr8_3:1651567-1651586 | None:intergenic | 55.0% | |
| GGGGTTGTGCTCATTGCAAG+AGG | + | chr8_3:1651568-1651587 | Msa1268580:CDS | 55.0% | |
| GTGAGTTTGGCGTGTGCGTC+TGG | + | chr8_3:1647936-1647955 | Msa1268580:intron | 60.0% | |
| ACCCACCTTGTGTGCTCCAC+AGG | + | chr8_3:1649099-1649118 | Msa1268580:intron | 60.0% | |
| GCCGGAAATCATGGGGTGGT+GGG | - | chr8_3:1649481-1649500 | None:intergenic | 60.0% | |
| CAGCCTGGCCGGAAATCATG+GGG | - | chr8_3:1649488-1649507 | None:intergenic | 60.0% | |
| CTCAGCCTGGCCGGAAATCA+TGG | - | chr8_3:1649490-1649509 | None:intergenic | 60.0% | |
| CGAGGCGAAGGAGGTGGTAT+CGG | - | chr8_3:1649775-1649794 | None:intergenic | 60.0% | |
| GTTGCTGCTGATCGAGGCGA+AGG | - | chr8_3:1649787-1649806 | None:intergenic | 60.0% | |
| TCGCCTCGATCAGCAGCAAC+CGG | + | chr8_3:1649787-1649806 | Msa1268580:CDS | 60.0% | |
| ACACAGCTGCTTCGCCCTCT+CGG | - | chr8_3:1649850-1649869 | None:intergenic | 60.0% | |
| !! | TTTTGTTTGGGGGGTGGGGG+AGG | + | chr8_3:1650766-1650785 | Msa1268580:intron | 60.0% |
| GGCCGGAAATCATGGGGTGG+TGG | - | chr8_3:1649482-1649501 | None:intergenic | 65.0% | |
| CCTGGCCGGAAATCATGGGG+TGG | - | chr8_3:1649485-1649504 | None:intergenic | 65.0% | |
| CCACCCCATGATTTCCGGCC+AGG | + | chr8_3:1649482-1649501 | Msa1268580:intron | 65.0% | |
| GCTGATCGAGGCGAAGGAGG+TGG | - | chr8_3:1649781-1649800 | None:intergenic | 65.0% | |
| GCTGCTGATCGAGGCGAAGG+AGG | - | chr8_3:1649784-1649803 | None:intergenic | 65.0% | |
| ! | AGGCACGGATGCTGCCGGCT+AGG | + | chr8_3:1650013-1650032 | Msa1268580:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 1647327 | 1652181 | 1647327 | ID=Msa1268580;Name=Msa1268580 |
| chr8_3 | mRNA | 1647327 | 1652181 | 1647327 | ID=Msa1268580-mRNA-1;Parent=Msa1268580;Name=Msa1268580-mRNA-1;_AED=0.13;_eAED=0.13;_QI=216|1|1|1|1|1|6|312|375 |
| chr8_3 | exon | 1647327 | 1647538 | 1647327 | ID=Msa1268580-mRNA-1:exon:455;Parent=Msa1268580-mRNA-1 |
| chr8_3 | exon | 1649720 | 1649981 | 1649720 | ID=Msa1268580-mRNA-1:exon:456;Parent=Msa1268580-mRNA-1 |
| chr8_3 | exon | 1650360 | 1650490 | 1650360 | ID=Msa1268580-mRNA-1:exon:457;Parent=Msa1268580-mRNA-1 |
| chr8_3 | exon | 1650928 | 1651234 | 1650928 | ID=Msa1268580-mRNA-1:exon:458;Parent=Msa1268580-mRNA-1 |
| chr8_3 | exon | 1651351 | 1651661 | 1651351 | ID=Msa1268580-mRNA-1:exon:459;Parent=Msa1268580-mRNA-1 |
| chr8_3 | exon | 1651749 | 1652181 | 1651749 | ID=Msa1268580-mRNA-1:exon:460;Parent=Msa1268580-mRNA-1 |
| chr8_3 | five_prime_UTR | 1647327 | 1647538 | 1647327 | ID=Msa1268580-mRNA-1:five_prime_utr;Parent=Msa1268580-mRNA-1 |
| chr8_3 | five_prime_UTR | 1649720 | 1649723 | 1649720 | ID=Msa1268580-mRNA-1:five_prime_utr;Parent=Msa1268580-mRNA-1 |
| chr8_3 | CDS | 1649724 | 1649981 | 1649724 | ID=Msa1268580-mRNA-1:cds;Parent=Msa1268580-mRNA-1 |
| chr8_3 | CDS | 1650360 | 1650490 | 1650360 | ID=Msa1268580-mRNA-1:cds;Parent=Msa1268580-mRNA-1 |
| chr8_3 | CDS | 1650928 | 1651234 | 1650928 | ID=Msa1268580-mRNA-1:cds;Parent=Msa1268580-mRNA-1 |
| chr8_3 | CDS | 1651351 | 1651661 | 1651351 | ID=Msa1268580-mRNA-1:cds;Parent=Msa1268580-mRNA-1 |
| chr8_3 | CDS | 1651749 | 1651869 | 1651749 | ID=Msa1268580-mRNA-1:cds;Parent=Msa1268580-mRNA-1 |
| chr8_3 | three_prime_UTR | 1651870 | 1652181 | 1651870 | ID=Msa1268580-mRNA-1:three_prime_utr;Parent=Msa1268580-mRNA-1 |
| Gene Sequence |
| Protein sequence |
