Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1399990 | AES94554.2 | 97.554 | 368 | 9 | 0 | 3 | 370 | 47 | 414 | 0.0 | 754 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1399990 | sp|Q9FJX5|BT4_ARATH | 65.000 | 360 | 114 | 2 | 11 | 369 | 20 | 368 | 9.52e-177 | 498 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1399990 | G7K3T4 | 97.554 | 368 | 9 | 0 | 3 | 370 | 47 | 414 | 0.0 | 754 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1399990 | TR | TAZ |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0714000 | Msa1399990 | 0.988982 | 3.318909e-176 | -8.615850e-47 |
| Msa0835330 | Msa1399990 | 0.928652 | 2.133170e-92 | -8.615850e-47 |
| Msa1268580 | Msa1399990 | 0.839223 | 1.802038e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1399990 | MtrunA17_Chr5g0401281 | 97.554 | 368 | 9 | 0 | 3 | 370 | 8 | 375 | 0.0 | 753 |
| Msa1399990 | MtrunA17_Chr4g0058071 | 44.781 | 297 | 159 | 5 | 63 | 355 | 17 | 312 | 5.75e-83 | 256 |
| Msa1399990 | MtrunA17_Chr3g0116501 | 38.725 | 204 | 124 | 1 | 131 | 334 | 1 | 203 | 1.46e-50 | 168 |
| Msa1399990 | MtrunA17_Chr4g0000031 | 34.426 | 122 | 66 | 4 | 243 | 364 | 1598 | 1705 | 3.63e-15 | 77.4 |
| Msa1399990 | MtrunA17_Chr3g0125321 | 29.412 | 153 | 101 | 3 | 76 | 226 | 97 | 244 | 5.51e-13 | 68.2 |
| Msa1399990 | MtrunA17_Chr5g0438991 | 38.356 | 73 | 44 | 1 | 273 | 345 | 886 | 957 | 1.30e-12 | 69.3 |
| Msa1399990 | MtrunA17_Chr3g0138411 | 39.506 | 81 | 47 | 2 | 274 | 353 | 1119 | 1198 | 4.42e-12 | 67.8 |
| Msa1399990 | MtrunA17_Chr6g0456861 | 38.889 | 72 | 43 | 1 | 274 | 345 | 692 | 762 | 6.86e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1399990 | AT5G67480.1 | 65.000 | 360 | 114 | 2 | 11 | 369 | 20 | 368 | 9.68e-178 | 498 |
| Msa1399990 | AT5G67480.3 | 65.000 | 360 | 114 | 2 | 11 | 369 | 20 | 368 | 9.68e-178 | 498 |
| Msa1399990 | AT5G67480.2 | 65.000 | 360 | 114 | 2 | 11 | 369 | 31 | 379 | 1.58e-177 | 498 |
| Msa1399990 | AT4G37610.1 | 60.976 | 328 | 126 | 2 | 41 | 367 | 34 | 360 | 8.77e-150 | 427 |
| Msa1399990 | AT1G05690.1 | 49.861 | 361 | 167 | 4 | 4 | 360 | 1 | 351 | 1.62e-110 | 327 |
| Msa1399990 | AT3G48360.1 | 43.789 | 322 | 163 | 8 | 56 | 361 | 28 | 347 | 2.28e-79 | 248 |
| Msa1399990 | AT5G63160.1 | 43.770 | 313 | 163 | 7 | 61 | 361 | 24 | 335 | 8.93e-76 | 239 |
| Msa1399990 | AT3G48360.2 | 45.862 | 290 | 142 | 6 | 56 | 331 | 28 | 316 | 1.60e-73 | 232 |
| Msa1399990 | AT5G63160.2 | 46.099 | 282 | 140 | 6 | 61 | 331 | 24 | 304 | 2.72e-71 | 225 |
| Msa1399990 | AT5G63160.3 | 45.020 | 251 | 127 | 7 | 120 | 361 | 2 | 250 | 8.63e-60 | 194 |
| Msa1399990 | AT3G48360.3 | 44.033 | 243 | 122 | 7 | 131 | 361 | 1 | 241 | 1.34e-58 | 191 |
| Msa1399990 | AT1G79000.3 | 29.577 | 142 | 82 | 4 | 223 | 364 | 1546 | 1669 | 6.49e-15 | 77.0 |
| Msa1399990 | AT1G79000.2 | 29.577 | 142 | 82 | 4 | 223 | 364 | 1570 | 1693 | 6.53e-15 | 77.0 |
| Msa1399990 | AT1G79000.1 | 29.577 | 142 | 82 | 4 | 223 | 364 | 1570 | 1693 | 6.56e-15 | 77.0 |
| Msa1399990 | AT1G16710.2 | 28.873 | 142 | 83 | 4 | 223 | 364 | 1550 | 1673 | 9.89e-13 | 70.5 |
| Msa1399990 | AT1G16710.3 | 28.873 | 142 | 83 | 4 | 223 | 364 | 1553 | 1676 | 1.01e-12 | 70.5 |
| Msa1399990 | AT1G16710.10 | 28.873 | 142 | 83 | 4 | 223 | 364 | 1553 | 1676 | 1.01e-12 | 70.5 |
| Msa1399990 | AT1G16710.8 | 28.873 | 142 | 83 | 4 | 223 | 364 | 1553 | 1676 | 1.01e-12 | 70.5 |
| Msa1399990 | AT1G16710.7 | 28.873 | 142 | 83 | 4 | 223 | 364 | 1553 | 1676 | 1.01e-12 | 70.5 |
| Msa1399990 | AT1G16710.6 | 28.873 | 142 | 83 | 4 | 223 | 364 | 1514 | 1637 | 1.04e-12 | 70.1 |
| Msa1399990 | AT1G16710.4 | 28.873 | 142 | 83 | 4 | 223 | 364 | 1514 | 1637 | 1.04e-12 | 70.1 |
| Msa1399990 | AT1G16710.5 | 28.873 | 142 | 83 | 4 | 223 | 364 | 1514 | 1637 | 1.04e-12 | 70.1 |
| Msa1399990 | AT1G16710.1 | 28.873 | 142 | 83 | 4 | 223 | 364 | 1579 | 1702 | 1.08e-12 | 70.1 |
| Msa1399990 | AT3G12980.1 | 36.471 | 85 | 50 | 2 | 276 | 360 | 1581 | 1661 | 4.84e-11 | 65.1 |
| Msa1399990 | AT3G12980.2 | 36.471 | 85 | 50 | 2 | 276 | 360 | 1500 | 1580 | 4.84e-11 | 65.1 |
Find 98 sgRNAs with CRISPR-Local
Find 278 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGAAATTAGATGGACAATTT+TGG | 0.186306 | tig0022413:+63377 | Msa1399990:CDS |
| AATATATTGAAGATTGATTT+TGG | 0.190174 | tig0022413:+63687 | Msa1399990:three_prime_UTR |
| GGCGATCGATCTCAATCTTT+GGG | 0.258443 | tig0022413:+62009 | Msa1399990:CDS |
| TGGCGATCGATCTCAATCTT+TGG | 0.276993 | tig0022413:+62008 | Msa1399990:CDS |
| TTCGATATTTGTATTCTTCC+TGG | 0.281886 | tig0022413:+62060 | Msa1399990:CDS |
| TTTCTTTCAAGGTTAGATTA+AGG | 0.291505 | tig0022413:+59104 | Msa1399990:five_prime_UTR |
| TATTCCTTGAATTGAAAGTT+TGG | 0.294590 | tig0022413:-59081 | None:intergenic |
| CAATCTTCAATATATTGATT+TGG | 0.319165 | tig0022413:-63680 | None:intergenic |
| ATCTTGAAAACAAGAGGAAT+TGG | 0.329795 | tig0022413:+63408 | Msa1399990:CDS |
| AGAAAAGAAGAGAGGAATTC+CGG | 0.333093 | tig0022413:-59040 | None:intergenic |
| AAGCAATTCAAGCCCTTTGC+AGG | 0.347578 | tig0022413:-63097 | None:intergenic |
| CTGTCAGTGTAGTTGTTTGA+TGG | 0.354563 | tig0022413:-58917 | None:intergenic |
| AGTTCCAAACTTTCAATTCA+AGG | 0.358112 | tig0022413:+59077 | Msa1399990:five_prime_UTR |
| TTGGGATTGCACCATGCTTT+CGG | 0.361459 | tig0022413:+63427 | Msa1399990:CDS |
| AAAGAACTTCAAAACTGTTT+CGG | 0.374386 | tig0022413:+62718 | Msa1399990:CDS |
| AGTTCTAGAAAAGGAAATTC+TGG | 0.390373 | tig0022413:+62778 | Msa1399990:CDS |
| TTCAAGGAATATTTCTTTCA+AGG | 0.392170 | tig0022413:+59093 | Msa1399990:five_prime_UTR |
| CGCATACTCGCAAGGATAAC+CGG | 0.402463 | tig0022413:-61397 | None:intergenic |
| GCAAGAAAGACGAAATTAGA+TGG | 0.406485 | tig0022413:+63367 | Msa1399990:CDS |
| AAAGGAACTCTACAGAAATC+TGG | 0.408140 | tig0022413:-63222 | None:intergenic |
| TGTATTATTATAGTAAGAAA+TGG | 0.409631 | tig0022413:+63534 | Msa1399990:three_prime_UTR |
| ATGTGAACAGAAGCTAGAAT+TGG | 0.410891 | tig0022413:+62601 | Msa1399990:CDS |
| AGAGATGGTTGTCGAACTAT+TGG | 0.415706 | tig0022413:+63027 | Msa1399990:CDS |
| GGTTGCAAGTTGAGAGTCCC+TGG | 0.418562 | tig0022413:+63135 | Msa1399990:CDS |
| CTAGTTCACATTTGTAGAGA+TGG | 0.440223 | tig0022413:+63012 | Msa1399990:CDS |
| CGAGGCGAAGGAGGTGGTAT+CGG | 0.446905 | tig0022413:-61363 | None:intergenic |
| TCTGTAGAGTTCCTTTGTGC+AGG | 0.450851 | tig0022413:+63229 | Msa1399990:CDS |
| TCTTGAAAACAAGAGGAATT+GGG | 0.451569 | tig0022413:+63409 | Msa1399990:CDS |
| TTCAGCATGCCTCTCAATAC+AGG | 0.459183 | tig0022413:-61963 | None:intergenic |
| TGAGATCGATCGCCACCGAT+TGG | 0.468351 | tig0022413:-62000 | None:intergenic |
| GAAAAGAAGAGAGGAATTCC+GGG | 0.470148 | tig0022413:-59039 | None:intergenic |
| GGAATTTGTCCTACATTTGT+TGG | 0.476702 | tig0022413:+62538 | Msa1399990:CDS |
| GAGTCACCCAGTTCTAGAAA+AGG | 0.485308 | tig0022413:+62769 | Msa1399990:CDS |
| AGAACAAAATAAACAAATGT+TGG | 0.495391 | tig0022413:-63626 | None:intergenic |
| GTTTGCATTAATACTGATAA+CGG | 0.495992 | tig0022413:+61519 | Msa1399990:CDS |
| TGTGAACAGAAGCTAGAATT+GGG | 0.501782 | tig0022413:+62602 | Msa1399990:CDS |
| ACACAGCTGCTTCGCCCTCT+CGG | 0.509722 | tig0022413:-61438 | None:intergenic |
| GAGCAACAATTCATCCTTGA+GGG | 0.511620 | tig0022413:-63557 | None:intergenic |
| TTACGAGAAAGAAGAAATGA+AGG | 0.513436 | tig0022413:+62517 | Msa1399990:CDS |
| TTCTGCAACAAGAGATCTGT+GGG | 0.515476 | tig0022413:+61464 | Msa1399990:CDS |
| TCGCCTCGATCAGCAGCAAC+CGG | 0.515743 | tig0022413:+61378 | Msa1399990:CDS |
| ATCTAATAGTTCTATATCCC+CGG | 0.516716 | tig0022413:-63469 | None:intergenic |
| GTTGCAAGTTGAGAGTCCCT+GGG | 0.520761 | tig0022413:+63136 | Msa1399990:CDS |
| TCTGTTTGAAGAGATTTCTA+CGG | 0.524665 | tig0022413:-58992 | None:intergenic |
| CACATTCACGCTTCAAGTGA+GGG | 0.529306 | tig0022413:-62583 | None:intergenic |
| GTGCTCATTGCAAGAGGATG+TGG | 0.529329 | tig0022413:+63163 | Msa1399990:CDS |
| ATAAGCTGATGGCTAACATT+CGG | 0.529455 | tig0022413:+61322 | Msa1399990:exon |
| CAAGAGGATGTGGCAACTGT+TGG | 0.537744 | tig0022413:+63173 | Msa1399990:CDS |
| ATTGATTGATCAGAGTAAGA+AGG | 0.539090 | tig0022413:+62927 | Msa1399990:intron |
| CTTTGAAGTCTTTATCATGC+GGG | 0.542449 | tig0022413:-63050 | None:intergenic |
| AAAACTGTTTCGGAGTCAGA+AGG | 0.543714 | tig0022413:+62728 | Msa1399990:CDS |
| GAGAAAGCACCAACAAATGT+AGG | 0.546221 | tig0022413:-62547 | None:intergenic |
| ATAGTAAGAAATGGCCCTCA+AGG | 0.546989 | tig0022413:+63543 | Msa1399990:three_prime_UTR |
| AGCAAGCAAATCGTTCCAAT+CGG | 0.549306 | tig0022413:+61985 | Msa1399990:CDS |
| GTTGCTGCTGATCGAGGCGA+AGG | 0.550246 | tig0022413:-61375 | None:intergenic |
| TTTGCAATTATACGATGCAA+TGG | 0.552736 | tig0022413:+62984 | Msa1399990:CDS |
| GTAGGTATACTTCCTGCAAA+GGG | 0.554458 | tig0022413:+63085 | Msa1399990:CDS |
| GCTGATCGAGGCGAAGGAGG+TGG | 0.554736 | tig0022413:-61369 | None:intergenic |
| AAGAAATGAGAAAAGAAGAG+AGG | 0.555753 | tig0022413:-59048 | None:intergenic |
| ATCAGTATTAATGCAAACAT+CGG | 0.559796 | tig0022413:-61514 | None:intergenic |
| AGGAAGTATACCTACACGGC+TGG | 0.561333 | tig0022413:-63077 | None:intergenic |
| GAAAAGATCTTGAAAACAAG+AGG | 0.566400 | tig0022413:+63402 | Msa1399990:CDS |
| GCTTTGAAGTCTTTATCATG+CGG | 0.567781 | tig0022413:-63051 | None:intergenic |
| TTCATCGCCGCATACTCGCA+AGG | 0.575928 | tig0022413:-61405 | None:intergenic |
| ATGAATAATTTATCACCGAG+AGG | 0.575964 | tig0022413:+61423 | Msa1399990:CDS |
| TTGTTTACTTTAAAGTAGAG+AGG | 0.577349 | tig0022413:-63579 | None:intergenic |
| TATAGTTCATTCAAAAGTAA+CGG | 0.582739 | tig0022413:-63654 | None:intergenic |
| GCTGCTGATCGAGGCGAAGG+AGG | 0.588376 | tig0022413:-61372 | None:intergenic |
| TGTAGGTATACTTCCTGCAA+AGG | 0.593266 | tig0022413:+63084 | Msa1399990:CDS |
| TTGATCAGAGTAAGAAGGAG+AGG | 0.595421 | tig0022413:+62932 | Msa1399990:intron |
| TCACATTCACGCTTCAAGTG+AGG | 0.596344 | tig0022413:-62584 | None:intergenic |
| AAGTAAACAATATATAGCAT+AGG | 0.599958 | tig0022413:+63592 | Msa1399990:three_prime_UTR |
| CGGTTATCCTTGCGAGTATG+CGG | 0.602040 | tig0022413:+61398 | Msa1399990:CDS |
| CTGTTTCGGAGTCAGAAGGA+TGG | 0.605228 | tig0022413:+62732 | Msa1399990:CDS |
| AAGCAAATCGTTCCAATCGG+TGG | 0.607764 | tig0022413:+61988 | Msa1399990:CDS |
| AGAAGTAATTCACATACCCC+CGG | 0.610334 | tig0022413:+59021 | Msa1399990:five_prime_UTR |
| TCAAAGCAAACCAGCCGTGT+AGG | 0.611970 | tig0022413:+63067 | Msa1399990:CDS |
| TGTCATTGTGGCCGAAAGCA+TGG | 0.612906 | tig0022413:-63438 | None:intergenic |
| TAACCGGTTGCTGCTGATCG+AGG | 0.614451 | tig0022413:-61381 | None:intergenic |
| AGCAGTGAAGCATAAGCTGA+TGG | 0.620226 | tig0022413:+61311 | Msa1399990:exon |
| GGGGTTGTGCTCATTGCAAG+AGG | 0.622565 | tig0022413:+63157 | Msa1399990:CDS |
| AAAACTCGTACTGCATCATG+TGG | 0.623793 | tig0022413:-62035 | None:intergenic |
| GTGGCTTCTCCTGTATTGAG+AGG | 0.626268 | tig0022413:+61954 | Msa1399990:CDS |
| TACATCAACTAGATTATCCA+CGG | 0.627170 | tig0022413:-62633 | None:intergenic |
| GCGATCGATCTCAATCTTTG+GGG | 0.627705 | tig0022413:+62010 | Msa1399990:CDS |
| GGAGCAACAATTCATCCTTG+AGG | 0.635350 | tig0022413:-63558 | None:intergenic |
| CTTCTGCAACAAGAGATCTG+TGG | 0.636785 | tig0022413:+61463 | Msa1399990:CDS |
| TGAATAATTTATCACCGAGA+GGG | 0.647099 | tig0022413:+61424 | Msa1399990:CDS |
| TGCATTAATACTGATAACGG+TGG | 0.661014 | tig0022413:+61522 | Msa1399990:CDS |
| TTGCAAGTTGAGAGTCCCTG+GGG | 0.661286 | tig0022413:+63137 | Msa1399990:CDS |
| TAATATTGTTACCTGCACAA+AGG | 0.667930 | tig0022413:-63240 | None:intergenic |
| AAAAGAAGAGAGGAATTCCG+GGG | 0.681139 | tig0022413:-59038 | None:intergenic |
| AGAATTGGGTTTACTCACCG+TGG | 0.691467 | tig0022413:+62616 | Msa1399990:CDS |
| TTGCAGGAAGTATACCTACA+CGG | 0.699708 | tig0022413:-63081 | None:intergenic |
| TGCAAGTTGAGAGTCCCTGG+GGG | 0.717689 | tig0022413:+63138 | Msa1399990:CDS |
| CATTACTGTGTGATGCTCCG+CGG | 0.722450 | tig0022413:+62666 | Msa1399990:CDS |
| AAAGAAGAGAGGAATTCCGG+GGG | 0.742234 | tig0022413:-59037 | None:intergenic |
| TGACAAATGAGACTGAGCCG+CGG | 0.747022 | tig0022413:-62683 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTTAATTTCTAATGTT+TGG | - | tig0022413:60226-60245 | None:intergenic | 10.0% |
| !! | AAACATTAGAAATTAAAATA+AGG | + | tig0022413:60225-60244 | Msa1399990:intron | 10.0% |
| !! | CAATAACATATTAATATATA+AGG | + | tig0022413:60835-60854 | Msa1399990:intron | 10.0% |
| !! | TAAATAAGATTAAAATCTAA+GGG | - | tig0022413:61019-61038 | None:intergenic | 10.0% |
| !! | ATAAATAAGATTAAAATCTA+AGG | - | tig0022413:61020-61039 | None:intergenic | 10.0% |
| !! | AATAGTTATATAAATAGATA+AGG | - | tig0022413:61256-61275 | None:intergenic | 10.0% |
| !! | TAAAATACTTAAGTTTGATA+CGG | - | tig0022413:60403-60422 | None:intergenic | 15.0% |
| !!! | AAACTTAAGTATTTTATTCA+AGG | + | tig0022413:60407-60426 | Msa1399990:intron | 15.0% |
| !! | TAACTTAATCACATAATAAA+AGG | + | tig0022413:60603-60622 | Msa1399990:intron | 15.0% |
| !!! | TTTTTTTCCTTTCTTTTTTT+AGG | - | tig0022413:60777-60796 | None:intergenic | 15.0% |
| !! | TATCATAATCATACAATAAA+AGG | + | tig0022413:60896-60915 | Msa1399990:intron | 15.0% |
| !! | AACTTGTGATATTATAATAA+TGG | + | tig0022413:60929-60948 | Msa1399990:intron | 15.0% |
| !!! | TATGCAATTAATCTATTTTA+AGG | + | tig0022413:61735-61754 | Msa1399990:intron | 15.0% |
| !!! | TAACTTTAAGAAATTTCAAT+CGG | + | tig0022413:62240-62259 | Msa1399990:intron | 15.0% |
| !!! | AAAAAAATTGAGTTTTGTTT+GGG | + | tig0022413:62343-62362 | Msa1399990:intron | 15.0% |
| !! | TTACACAATAATAGATAATT+AGG | + | tig0022413:62879-62898 | Msa1399990:intron | 15.0% |
| !! | TGTATTATTATAGTAAGAAA+TGG | + | tig0022413:63534-63553 | Msa1399990:three_prime_UTR | 15.0% |
| !!! | AATATATTGAAGATTGATTT+TGG | + | tig0022413:63687-63706 | Msa1399990:three_prime_UTR | 15.0% |
| !! | GAAAGAAATCTTAATTGAAA+TGG | - | tig0022413:59154-59173 | None:intergenic | 20.0% |
| !! | AATTCAACTAATAGTGTTTA+GGG | - | tig0022413:59833-59852 | None:intergenic | 20.0% |
| !! | AACAAAACAATTGTCAATTT+AGG | + | tig0022413:60107-60126 | Msa1399990:intron | 20.0% |
| !! | ATCTAACAATAAAACATAAG+AGG | + | tig0022413:60198-60217 | Msa1399990:intron | 20.0% |
| !!! | TTGCTTTTTTATTTGAATGT+GGG | - | tig0022413:60253-60272 | None:intergenic | 20.0% |
| !!! | TTTGCTTTTTTATTTGAATG+TGG | - | tig0022413:60254-60273 | None:intergenic | 20.0% |
| !!! | TTCATTTTATAGAAGAATGT+GGG | - | tig0022413:60286-60305 | None:intergenic | 20.0% |
| !!! | TTATTTCTACATGATATGAA+TGG | - | tig0022413:60485-60504 | None:intergenic | 20.0% |
| !!! | AGCTTATCTTTAATTCTTTT+TGG | + | tig0022413:60564-60583 | Msa1399990:intron | 20.0% |
| !! | GTTAAATGTCATATAATATG+TGG | - | tig0022413:60636-60655 | None:intergenic | 20.0% |
| !!! | TTATTGGCTAACATTAATTT+CGG | + | tig0022413:61103-61122 | Msa1399990:intron | 20.0% |
| !!! | TTTTATTCTGCTGAAATTAA+GGG | - | tig0022413:61219-61238 | None:intergenic | 20.0% |
| !!! | TTTTTATTCTGCTGAAATTA+AGG | - | tig0022413:61220-61239 | None:intergenic | 20.0% |
| !! | ATTTCAGCAGAATAAAAAAA+AGG | + | tig0022413:61222-61241 | Msa1399990:intron | 20.0% |
| !!! | ATGATTTTGAGGTTTATAAA+GGG | - | tig0022413:62096-62115 | None:intergenic | 20.0% |
| !!! | TATGATTTTGAGGTTTATAA+AGG | - | tig0022413:62097-62116 | None:intergenic | 20.0% |
| !! | ATTTCTTAAAGTTATCCTAT+CGG | - | tig0022413:62234-62253 | None:intergenic | 20.0% |
| !!! | GAAAAAAATTGAGTTTTGTT+TGG | + | tig0022413:62342-62361 | Msa1399990:intron | 20.0% |
| !!! | AAAAAATTGAGTTTTGTTTG+GGG | + | tig0022413:62344-62363 | Msa1399990:intron | 20.0% |
| !!! | TGAAGTTCTTTAGTATTTTA+CGG | - | tig0022413:62709-62728 | None:intergenic | 20.0% |
| !! | AAGTAAACAATATATAGCAT+AGG | + | tig0022413:63592-63611 | Msa1399990:three_prime_UTR | 20.0% |
| !! | AGAACAAAATAAACAAATGT+TGG | - | tig0022413:63629-63648 | None:intergenic | 20.0% |
| !! | TATAGTTCATTCAAAAGTAA+CGG | - | tig0022413:63657-63676 | None:intergenic | 20.0% |
| !!! | TTACTTTTGAATGAACTATA+TGG | + | tig0022413:63657-63676 | Msa1399990:three_prime_UTR | 20.0% |
| !!! | CAATCTTCAATATATTGATT+TGG | - | tig0022413:63683-63702 | None:intergenic | 20.0% |
| ! | TATTCCTTGAATTGAAAGTT+TGG | - | tig0022413:59084-59103 | None:intergenic | 25.0% |
| ! | TTCAAGGAATATTTCTTTCA+AGG | + | tig0022413:59093-59112 | Msa1399990:five_prime_UTR | 25.0% |
| ! | TTTCTTTCAAGGTTAGATTA+AGG | + | tig0022413:59104-59123 | Msa1399990:five_prime_UTR | 25.0% |
| !! | AGATTAATTCGTTGATTATC+TGG | + | tig0022413:59275-59294 | Msa1399990:intron | 25.0% |
| !! | GTTTTTGTAGATTCTTGATT+TGG | + | tig0022413:59303-59322 | Msa1399990:intron | 25.0% |
| !! | TATATCATTGATTGCATGTT+TGG | - | tig0022413:59650-59669 | None:intergenic | 25.0% |
| ! | ATACGAAACAGAAACTATTT+GGG | - | tig0022413:59756-59775 | None:intergenic | 25.0% |
| ! | TATACGAAACAGAAACTATT+TGG | - | tig0022413:59757-59776 | None:intergenic | 25.0% |
| !! | GTTTGAGACTTTAAGTAAAT+AGG | + | tig0022413:59798-59817 | Msa1399990:intron | 25.0% |
| ! | GAATTCAACTAATAGTGTTT+AGG | - | tig0022413:59834-59853 | None:intergenic | 25.0% |
| ! | ATTGACATGTTACAATTTCA+AGG | - | tig0022413:59888-59907 | None:intergenic | 25.0% |
| !! | CTTCATTTTATAGAAGAATG+TGG | - | tig0022413:60287-60306 | None:intergenic | 25.0% |
| !!! | TGAAGACTCAATTTTGTTAT+CGG | + | tig0022413:60302-60321 | Msa1399990:intron | 25.0% |
| !! | ATTTTTACTCTTTCTCTCTT+TGG | - | tig0022413:60351-60370 | None:intergenic | 25.0% |
| !!! | AGGTATGTATTTTGATAAAG+AGG | + | tig0022413:60453-60472 | Msa1399990:intron | 25.0% |
| ! | ATTTACAATTGTAACTTACG+AGG | + | tig0022413:60505-60524 | Msa1399990:intron | 25.0% |
| ! | AGATAAGCTATATTACAAGT+AGG | - | tig0022413:60553-60572 | None:intergenic | 25.0% |
| ! | CATTTAACTGAATAGCTTAT+CGG | + | tig0022413:60648-60667 | Msa1399990:intron | 25.0% |
| ! | TTATCCAAATCTATGTGTAA+TGG | + | tig0022413:60871-60890 | Msa1399990:intron | 25.0% |
| ! | AAAATGCTAGATATCAAGAA+TGG | + | tig0022413:60952-60971 | Msa1399990:intron | 25.0% |
| !! | TATTGGCTAACATTAATTTC+GGG | + | tig0022413:61104-61123 | Msa1399990:intron | 25.0% |
| !! | AATTCTTTTCATTCAGTAGT+TGG | + | tig0022413:61182-61201 | Msa1399990:intron | 25.0% |
| ! | ATCAGTATTAATGCAAACAT+CGG | - | tig0022413:61517-61536 | None:intergenic | 25.0% |
| ! | GTTTGCATTAATACTGATAA+CGG | + | tig0022413:61519-61538 | Msa1399990:CDS | 25.0% |
| ! | TCACTTTATACTATATGATC+AGG | + | tig0022413:61929-61948 | Msa1399990:intron | 25.0% |
| !! | CAAACATTCTTATGATTTTG+AGG | - | tig0022413:62107-62126 | None:intergenic | 25.0% |
| ! | AACTGTGAAATTGAAACAAA+TGG | + | tig0022413:62316-62335 | Msa1399990:intron | 25.0% |
| !!! | AAAAATTGAGTTTTGTTTGG+GGG | + | tig0022413:62345-62364 | Msa1399990:intron | 25.0% |
| ! | AAAGAACTTCAAAACTGTTT+CGG | + | tig0022413:62718-62737 | Msa1399990:CDS | 25.0% |
| ! | TGATTGAAGAAGAAAATGTA+AGG | + | tig0022413:62807-62826 | Msa1399990:intron | 25.0% |
| ! | ATTCAAAAGTAGTTAGACAA+TGG | - | tig0022413:62905-62924 | None:intergenic | 25.0% |
| ! | TGATTGTATTTATTTCAGCT+CGG | + | tig0022413:63278-63297 | Msa1399990:intron | 25.0% |
| !! | GTAACAAATCTTTTCATTTC+AGG | + | tig0022413:63316-63335 | Msa1399990:intron | 25.0% |
| !!! | TTGTTTACTTTAAAGTAGAG+AGG | - | tig0022413:63582-63601 | None:intergenic | 25.0% |
| TCTGTTTGAAGAGATTTCTA+CGG | - | tig0022413:58995-59014 | None:intergenic | 30.0% | |
| AAGAAATGAGAAAAGAAGAG+AGG | - | tig0022413:59051-59070 | None:intergenic | 30.0% | |
| AGTTCCAAACTTTCAATTCA+AGG | + | tig0022413:59077-59096 | Msa1399990:five_prime_UTR | 30.0% | |
| !! | ATTCGTTGATTATCTGGTTT+TGG | + | tig0022413:59281-59300 | Msa1399990:intron | 30.0% |
| ACTTCATGTTGAGATTTACA+TGG | + | tig0022413:59432-59451 | Msa1399990:intron | 30.0% | |
| TACCTTACTGTATGTATGTT+TGG | + | tig0022413:59497-59516 | Msa1399990:intron | 30.0% | |
| ATCCAAACATACATACAGTA+AGG | - | tig0022413:59502-59521 | None:intergenic | 30.0% | |
| TTAGAGCTTCAATAGAATCA+AGG | - | tig0022413:59569-59588 | None:intergenic | 30.0% | |
| TATTGTAATTCTGCCAAACT+CGG | + | tig0022413:59617-59636 | Msa1399990:intron | 30.0% | |
| TCTTAGTGATCAATAGTTTC+TGG | + | tig0022413:59698-59717 | Msa1399990:intron | 30.0% | |
| CTTAGTGATCAATAGTTTCT+GGG | + | tig0022413:59699-59718 | Msa1399990:intron | 30.0% | |
| GTCTCAAACAAATGTACAAT+AGG | - | tig0022413:59787-59806 | None:intergenic | 30.0% | |
| GTCAATCAAAATAGTCCTTA+TGG | + | tig0022413:59902-59921 | Msa1399990:intron | 30.0% | |
| TAACAGGTAAACTTACCATA+AGG | - | tig0022413:59920-59939 | None:intergenic | 30.0% | |
| ! | CTGCATGCTATAATTTTGTA+TGG | + | tig0022413:60022-60041 | Msa1399990:intron | 30.0% |
| GTAAAGCATAGAATTTACCT+TGG | + | tig0022413:60044-60063 | Msa1399990:intron | 30.0% | |
| !! | TTACCTTGGCTTTAAGATTT+AGG | + | tig0022413:60058-60077 | Msa1399990:intron | 30.0% |
| TTTCCTAAATCTTAAAGCCA+AGG | - | tig0022413:60064-60083 | None:intergenic | 30.0% | |
| AACAATTGTCAATTTAGGTC+TGG | + | tig0022413:60112-60131 | Msa1399990:intron | 30.0% | |
| !! | ACTCAATTTTGTTATCGGTA+TGG | + | tig0022413:60307-60326 | Msa1399990:intron | 30.0% |
| AGCTATATTACAAGTAGGTT+TGG | - | tig0022413:60548-60567 | None:intergenic | 30.0% | |
| !!! | TTTTTTAGGTACCATGCTAT+TGG | - | tig0022413:60763-60782 | None:intergenic | 30.0% |
| CATGGTACCTAAAAAAAGAA+AGG | + | tig0022413:60767-60786 | Msa1399990:intron | 30.0% | |
| CATGATATACTTCAACTCTT+TGG | - | tig0022413:60803-60822 | None:intergenic | 30.0% | |
| CACATAGATTTGGATAAGAT+TGG | - | tig0022413:60868-60887 | None:intergenic | 30.0% | |
| TAAGCCATTACACATAGATT+TGG | - | tig0022413:60878-60897 | None:intergenic | 30.0% | |
| TGATGAATTCAAGAATGACA+TGG | + | tig0022413:60982-61001 | Msa1399990:intron | 30.0% | |
| ATGAATAATTTATCACCGAG+AGG | + | tig0022413:61423-61442 | Msa1399990:CDS | 30.0% | |
| TGAATAATTTATCACCGAGA+GGG | + | tig0022413:61424-61443 | Msa1399990:CDS | 30.0% | |
| TCTTTGAACGAATTAGTAGT+AGG | + | tig0022413:61680-61699 | Msa1399990:intron | 30.0% | |
| ! | AGTAGGCTCAAAATTTTCAT+AGG | + | tig0022413:61697-61716 | Msa1399990:intron | 30.0% |
| CTTTATACTATATGATCAGG+CGG | + | tig0022413:61932-61951 | Msa1399990:intron | 30.0% | |
| TTCGATATTTGTATTCTTCC+TGG | + | tig0022413:62060-62079 | Msa1399990:CDS | 30.0% | |
| TTTGTCTCCTTGTACTATAT+GGG | + | tig0022413:62123-62142 | Msa1399990:intron | 30.0% | |
| TAAGAAATTTCAATCGGTAG+TGG | + | tig0022413:62246-62265 | Msa1399990:intron | 30.0% | |
| TACTTCGAAATTGATCTACT+CGG | - | tig0022413:62292-62311 | None:intergenic | 30.0% | |
| !!! | AAAATTGAGTTTTGTTTGGG+GGG | + | tig0022413:62346-62365 | Msa1399990:intron | 30.0% |
| TTACGAGAAAGAAGAAATGA+AGG | + | tig0022413:62517-62536 | Msa1399990:CDS | 30.0% | |
| TACATCAACTAGATTATCCA+CGG | - | tig0022413:62636-62655 | None:intergenic | 30.0% | |
| !!! | GAATTTCCTTTTCTAGAACT+GGG | - | tig0022413:62778-62797 | None:intergenic | 30.0% |
| !!! | AGAATTTCCTTTTCTAGAAC+TGG | - | tig0022413:62779-62798 | None:intergenic | 30.0% |
| !! | AGTTCTAGAAAAGGAAATTC+TGG | + | tig0022413:62778-62797 | Msa1399990:CDS | 30.0% |
| ATTGATTGATCAGAGTAAGA+AGG | + | tig0022413:62927-62946 | Msa1399990:intron | 30.0% | |
| CAGAAAAATGAATGAAAGAG+AGG | + | tig0022413:62957-62976 | Msa1399990:CDS | 30.0% | |
| TTTGCAATTATACGATGCAA+TGG | + | tig0022413:62984-63003 | Msa1399990:CDS | 30.0% | |
| TAATATTGTTACCTGCACAA+AGG | - | tig0022413:63243-63262 | None:intergenic | 30.0% | |
| ! | CGAAATTAGATGGACAATTT+TGG | + | tig0022413:63377-63396 | Msa1399990:CDS | 30.0% |
| GAAAAGATCTTGAAAACAAG+AGG | + | tig0022413:63402-63421 | Msa1399990:CDS | 30.0% | |
| ATCTTGAAAACAAGAGGAAT+TGG | + | tig0022413:63408-63427 | Msa1399990:CDS | 30.0% | |
| TCTTGAAAACAAGAGGAATT+GGG | + | tig0022413:63409-63428 | Msa1399990:CDS | 30.0% | |
| ! | ATCTAATAGTTCTATATCCC+CGG | - | tig0022413:63472-63491 | None:intergenic | 30.0% |
| AGAAAAGAAGAGAGGAATTC+CGG | - | tig0022413:59043-59062 | None:intergenic | 35.0% | |
| GATTTCTTTCTCGTAATGCA+AGG | + | tig0022413:59164-59183 | Msa1399990:intron | 35.0% | |
| CTTGAATTGTGATCATGCAA+TGG | + | tig0022413:59395-59414 | Msa1399990:intron | 35.0% | |
| TGTATGTATGTTTGGATCAG+CGG | + | tig0022413:59505-59524 | Msa1399990:intron | 35.0% | |
| ATAGCTTCTGTCAATTACAG+TGG | + | tig0022413:59592-59611 | Msa1399990:intron | 35.0% | |
| ATTGCTAGTTGGACAAAGTT+AGG | - | tig0022413:59860-59879 | None:intergenic | 35.0% | |
| AGTTTACCTGTTAGACAACA+TGG | + | tig0022413:59927-59946 | Msa1399990:intron | 35.0% | |
| GAAAATGTGGCAAATCTACA+TGG | - | tig0022413:60159-60178 | None:intergenic | 35.0% | |
| ACGTTGTACGTTAGAAAATG+TGG | - | tig0022413:60172-60191 | None:intergenic | 35.0% | |
| ATTGTAACTTACGAGGAAAG+TGG | + | tig0022413:60512-60531 | Msa1399990:intron | 35.0% | |
| AACTGAATAGCTTATCGGAA+TGG | + | tig0022413:60653-60672 | Msa1399990:intron | 35.0% | |
| AATAGCTTATCGGAATGGAA+GGG | + | tig0022413:60658-60677 | Msa1399990:intron | 35.0% | |
| GAAGTAATGTACCAATAGCA+TGG | + | tig0022413:60749-60768 | Msa1399990:intron | 35.0% | |
| ATAAGCTGATGGCTAACATT+CGG | + | tig0022413:61322-61341 | Msa1399990:exon | 35.0% | |
| !! | TGCATTAATACTGATAACGG+TGG | + | tig0022413:61522-61541 | Msa1399990:CDS | 35.0% |
| ! | CATCCCACTTGATTTTGAAT+AGG | + | tig0022413:61584-61603 | Msa1399990:intron | 35.0% |
| GTGCCTATTCAAAATCAAGT+GGG | - | tig0022413:61590-61609 | None:intergenic | 35.0% | |
| ! | CACTTGATTTTGAATAGGCA+CGG | + | tig0022413:61589-61608 | Msa1399990:intron | 35.0% |
| !! | GAAATTTTGATGTACCTAGC+CGG | - | tig0022413:61621-61640 | None:intergenic | 35.0% |
| ATAAAGGGAACAAACATACC+AGG | - | tig0022413:62081-62100 | None:intergenic | 35.0% | |
| GTTTGTCTCCTTGTACTATA+TGG | + | tig0022413:62122-62141 | Msa1399990:intron | 35.0% | |
| ! | GTAGGCTTGATAATATTCTC+TGG | + | tig0022413:62145-62164 | Msa1399990:intron | 35.0% |
| GGAATTTGTCCTACATTTGT+TGG | + | tig0022413:62538-62557 | Msa1399990:CDS | 35.0% | |
| ATGTGAACAGAAGCTAGAAT+TGG | + | tig0022413:62601-62620 | Msa1399990:CDS | 35.0% | |
| TGTGAACAGAAGCTAGAATT+GGG | + | tig0022413:62602-62621 | Msa1399990:CDS | 35.0% | |
| CTAGTTCACATTTGTAGAGA+TGG | + | tig0022413:63012-63031 | Msa1399990:CDS | 35.0% | |
| !! | CTTTGAAGTCTTTATCATGC+GGG | - | tig0022413:63053-63072 | None:intergenic | 35.0% |
| !! | GCTTTGAAGTCTTTATCATG+CGG | - | tig0022413:63054-63073 | None:intergenic | 35.0% |
| AAAGGAACTCTACAGAAATC+TGG | - | tig0022413:63225-63244 | None:intergenic | 35.0% | |
| GCAAGAAAGACGAAATTAGA+TGG | + | tig0022413:63367-63386 | Msa1399990:CDS | 35.0% | |
| ! | CCACAATGACAATCTTTTTC+CGG | + | tig0022413:63450-63469 | Msa1399990:exon | 35.0% |
| ! | CACAATGACAATCTTTTTCC+GGG | + | tig0022413:63451-63470 | Msa1399990:exon | 35.0% |
| ! | ACAATGACAATCTTTTTCCG+GGG | + | tig0022413:63452-63471 | Msa1399990:exon | 35.0% |
| CTGTCAGTGTAGTTGTTTGA+TGG | - | tig0022413:58920-58939 | None:intergenic | 40.0% | |
| AGAAGTAATTCACATACCCC+CGG | + | tig0022413:59021-59040 | Msa1399990:five_prime_UTR | 40.0% | |
| AAAAGAAGAGAGGAATTCCG+GGG | - | tig0022413:59041-59060 | None:intergenic | 40.0% | |
| GAAAAGAAGAGAGGAATTCC+GGG | - | tig0022413:59042-59061 | None:intergenic | 40.0% | |
| TCAAGGTCGAAATTGCTAGT+TGG | - | tig0022413:59871-59890 | None:intergenic | 40.0% | |
| GAATAGCTTATCGGAATGGA+AGG | + | tig0022413:60657-60676 | Msa1399990:intron | 40.0% | |
| ATAGCTTATCGGAATGGAAG+GGG | + | tig0022413:60659-60678 | Msa1399990:intron | 40.0% | |
| TTACGGTGACAAATCGCAAT+CGG | - | tig0022413:60720-60739 | None:intergenic | 40.0% | |
| TTGCGATTTGTCACCGTAAA+AGG | + | tig0022413:60721-60740 | Msa1399990:intron | 40.0% | |
| ! | ATTACTTCCACCGCCTTTTA+CGG | - | tig0022413:60737-60756 | None:intergenic | 40.0% |
| TAGCCAATAAAATCTCAGCC+TGG | - | tig0022413:61093-61112 | None:intergenic | 40.0% | |
| TTCTGCAACAAGAGATCTGT+GGG | + | tig0022413:61464-61483 | Msa1399990:CDS | 40.0% | |
| CGTGCCTATTCAAAATCAAG+TGG | - | tig0022413:61591-61610 | None:intergenic | 40.0% | |
| TATACTATATGATCAGGCGG+TGG | + | tig0022413:61935-61954 | Msa1399990:intron | 40.0% | |
| AGCAAGCAAATCGTTCCAAT+CGG | + | tig0022413:61985-62004 | Msa1399990:CDS | 40.0% | |
| AAAACTCGTACTGCATCATG+TGG | - | tig0022413:62038-62057 | None:intergenic | 40.0% | |
| TCTCCTTGTACTATATGGGT+AGG | + | tig0022413:62127-62146 | Msa1399990:intron | 40.0% | |
| AAGCCTACCCATATAGTACA+AGG | - | tig0022413:62133-62152 | None:intergenic | 40.0% | |
| TACATCCATTCATTGCCGAT+AGG | + | tig0022413:62216-62235 | Msa1399990:intron | 40.0% | |
| GTTATCCTATCGGCAATGAA+TGG | - | tig0022413:62224-62243 | None:intergenic | 40.0% | |
| ATTGATCTACTCGGTTTAGC+TGG | - | tig0022413:62283-62302 | None:intergenic | 40.0% | |
| GAGATCAACATAGCTGATCA+AGG | + | tig0022413:62377-62396 | Msa1399990:intron | 40.0% | |
| !! | GAGAAAGCACCAACAAATGT+AGG | - | tig0022413:62550-62569 | None:intergenic | 40.0% |
| AAAACTGTTTCGGAGTCAGA+AGG | + | tig0022413:62728-62747 | Msa1399990:CDS | 40.0% | |
| TTGATCAGAGTAAGAAGGAG+AGG | + | tig0022413:62932-62951 | Msa1399990:intron | 40.0% | |
| AGAGATGGTTGTCGAACTAT+TGG | + | tig0022413:63027-63046 | Msa1399990:CDS | 40.0% | |
| ! | TTGCAGGAAGTATACCTACA+CGG | - | tig0022413:63084-63103 | None:intergenic | 40.0% |
| TGTAGGTATACTTCCTGCAA+AGG | + | tig0022413:63084-63103 | Msa1399990:CDS | 40.0% | |
| GTAGGTATACTTCCTGCAAA+GGG | + | tig0022413:63085-63104 | Msa1399990:CDS | 40.0% | |
| !! | TTGCTTGTTCGTCATTTTGC+TGG | + | tig0022413:63114-63133 | Msa1399990:CDS | 40.0% |
| CCGGAAAAAGATTGTCATTG+TGG | - | tig0022413:63453-63472 | None:intergenic | 40.0% | |
| ATAGTAAGAAATGGCCCTCA+AGG | + | tig0022413:63543-63562 | Msa1399990:three_prime_UTR | 40.0% | |
| GAGCAACAATTCATCCTTGA+GGG | - | tig0022413:63560-63579 | None:intergenic | 40.0% | |
| AAAGAAGAGAGGAATTCCGG+GGG | - | tig0022413:59040-59059 | None:intergenic | 45.0% | |
| GTTTGGATTGACACCGAGTT+TGG | - | tig0022413:59633-59652 | None:intergenic | 45.0% | |
| ! | GCATTGTTGTTGGGTACACA+TGG | - | tig0022413:59981-60000 | None:intergenic | 45.0% |
| AGCATGCAGCAATTTCATCC+TGG | - | tig0022413:60011-60030 | None:intergenic | 45.0% | |
| CGATTTGTCACCGTAAAAGG+CGG | + | tig0022413:60724-60743 | Msa1399990:intron | 45.0% | |
| CAATAAAATCTCAGCCTGGC+CGG | - | tig0022413:61089-61108 | None:intergenic | 45.0% | |
| AGCAGTGAAGCATAAGCTGA+TGG | + | tig0022413:61311-61330 | Msa1399990:exon | 45.0% | |
| CTTCTGCAACAAGAGATCTG+TGG | + | tig0022413:61463-61482 | Msa1399990:CDS | 45.0% | |
| !!! | TGGGAGCGTCTTTTCAATGA+AGG | + | tig0022413:61483-61502 | Msa1399990:CDS | 45.0% |
| !!! | GGGAGCGTCTTTTCAATGAA+GGG | + | tig0022413:61484-61503 | Msa1399990:CDS | 45.0% |
| CTCTTAAGCAGTGACATCTG+TGG | - | tig0022413:61761-61780 | None:intergenic | 45.0% | |
| TTCAGCATGCCTCTCAATAC+AGG | - | tig0022413:61966-61985 | None:intergenic | 45.0% | |
| AAGCAAATCGTTCCAATCGG+TGG | + | tig0022413:61988-62007 | Msa1399990:CDS | 45.0% | |
| TGGCGATCGATCTCAATCTT+TGG | + | tig0022413:62008-62027 | Msa1399990:CDS | 45.0% | |
| GGCGATCGATCTCAATCTTT+GGG | + | tig0022413:62009-62028 | Msa1399990:CDS | 45.0% | |
| GCGATCGATCTCAATCTTTG+GGG | + | tig0022413:62010-62029 | Msa1399990:CDS | 45.0% | |
| !!! | ATTGAGTTTTGTTTGGGGGG+TGG | + | tig0022413:62349-62368 | Msa1399990:intron | 45.0% |
| !!! | TTGAGTTTTGTTTGGGGGGT+GGG | + | tig0022413:62350-62369 | Msa1399990:intron | 45.0% |
| CACATTCACGCTTCAAGTGA+GGG | - | tig0022413:62586-62605 | None:intergenic | 45.0% | |
| TCACATTCACGCTTCAAGTG+AGG | - | tig0022413:62587-62606 | None:intergenic | 45.0% | |
| AGAATTGGGTTTACTCACCG+TGG | + | tig0022413:62616-62635 | Msa1399990:CDS | 45.0% | |
| !! | GAGTCACCCAGTTCTAGAAA+AGG | + | tig0022413:62769-62788 | Msa1399990:CDS | 45.0% |
| AAGCAATTCAAGCCCTTTGC+AGG | - | tig0022413:63100-63119 | None:intergenic | 45.0% | |
| TCTGTAGAGTTCCTTTGTGC+AGG | + | tig0022413:63229-63248 | Msa1399990:CDS | 45.0% | |
| TTGGGATTGCACCATGCTTT+CGG | + | tig0022413:63427-63446 | Msa1399990:CDS | 45.0% | |
| GGAGCAACAATTCATCCTTG+AGG | - | tig0022413:63561-63580 | None:intergenic | 45.0% | |
| !!! | TTTTTATTTTACTAAATTTA+AGG | + | tig0022413:60433-60452 | Msa1399990:intron | 5.0% |
| !! | AACAAAAAAATTAATAATTA+AGG | - | tig0022413:62846-62865 | None:intergenic | 5.0% |
| GTTTGGATCAGCGGTGAGTT+TGG | + | tig0022413:59514-59533 | Msa1399990:intron | 50.0% | |
| CGTCGTCCATGTTGTCTAAC+AGG | - | tig0022413:59936-59955 | None:intergenic | 50.0% | |
| ! | GGAGACGTGGCATTGTTGTT+GGG | - | tig0022413:59990-60009 | None:intergenic | 50.0% |
| TGGAGACGTGGCATTGTTGT+TGG | - | tig0022413:59991-60010 | None:intergenic | 50.0% | |
| AACAACAATGCCACGTCTCC+AGG | + | tig0022413:59990-60009 | Msa1399990:intron | 50.0% | |
| GCAATTTCATCCTGGAGACG+TGG | - | tig0022413:60003-60022 | None:intergenic | 50.0% | |
| TCTGGAGATGTGCAGTCATG+TGG | + | tig0022413:60130-60149 | Msa1399990:intron | 50.0% | |
| AATCGCAATCGGAGAACCTG+TGG | - | tig0022413:60709-60728 | None:intergenic | 50.0% | |
| TTTGTCACCGTAAAAGGCGG+TGG | + | tig0022413:60727-60746 | Msa1399990:intron | 50.0% | |
| ! | CGGCCAGGCTGAGATTTTAT+TGG | + | tig0022413:61087-61106 | Msa1399990:intron | 50.0% |
| CGCATACTCGCAAGGATAAC+CGG | - | tig0022413:61400-61419 | None:intergenic | 50.0% | |
| CGGTTATCCTTGCGAGTATG+CGG | + | tig0022413:61398-61417 | Msa1399990:CDS | 50.0% | |
| GTGGCTTCTCCTGTATTGAG+AGG | + | tig0022413:61954-61973 | Msa1399990:CDS | 50.0% | |
| TCTACTCGGTTTAGCTGGTG+AGG | - | tig0022413:62278-62297 | None:intergenic | 50.0% | |
| !!! | TGAGTTTTGTTTGGGGGGTG+GGG | + | tig0022413:62351-62370 | Msa1399990:intron | 50.0% |
| CATTACTGTGTGATGCTCCG+CGG | + | tig0022413:62666-62685 | Msa1399990:CDS | 50.0% | |
| TGACAAATGAGACTGAGCCG+CGG | - | tig0022413:62686-62705 | None:intergenic | 50.0% | |
| CTGTTTCGGAGTCAGAAGGA+TGG | + | tig0022413:62732-62751 | Msa1399990:CDS | 50.0% | |
| TCAAAGCAAACCAGCCGTGT+AGG | + | tig0022413:63067-63086 | Msa1399990:CDS | 50.0% | |
| ! | AGGAAGTATACCTACACGGC+TGG | - | tig0022413:63080-63099 | None:intergenic | 50.0% |
| ! | GTTGCAAGTTGAGAGTCCCT+GGG | + | tig0022413:63136-63155 | Msa1399990:CDS | 50.0% |
| ! | TTGCAAGTTGAGAGTCCCTG+GGG | + | tig0022413:63137-63156 | Msa1399990:CDS | 50.0% |
| GTGCTCATTGCAAGAGGATG+TGG | + | tig0022413:63163-63182 | Msa1399990:CDS | 50.0% | |
| CAAGAGGATGTGGCAACTGT+TGG | + | tig0022413:63173-63192 | Msa1399990:CDS | 50.0% | |
| TGTCATTGTGGCCGAAAGCA+TGG | - | tig0022413:63441-63460 | None:intergenic | 50.0% | |
| ACCTGTGGAGCACACAAGGT+GGG | - | tig0022413:60694-60713 | None:intergenic | 55.0% | |
| AACCTGTGGAGCACACAAGG+TGG | - | tig0022413:60695-60714 | None:intergenic | 55.0% | |
| GAGAACCTGTGGAGCACACA+AGG | - | tig0022413:60698-60717 | None:intergenic | 55.0% | |
| ACCCACCACCCCATGATTTC+CGG | + | tig0022413:61067-61086 | Msa1399990:intron | 55.0% | |
| TCAGCCTGGCCGGAAATCAT+GGG | - | tig0022413:61079-61098 | None:intergenic | 55.0% | |
| TAACCGGTTGCTGCTGATCG+AGG | - | tig0022413:61384-61403 | None:intergenic | 55.0% | |
| TTCATCGCCGCATACTCGCA+AGG | - | tig0022413:61408-61427 | None:intergenic | 55.0% | |
| TGAATAGGCACGGATGCTGC+CGG | + | tig0022413:61599-61618 | Msa1399990:intron | 55.0% | |
| TGAGATCGATCGCCACCGAT+TGG | - | tig0022413:62003-62022 | None:intergenic | 55.0% | |
| !!! | GAGTTTTGTTTGGGGGGTGG+GGG | + | tig0022413:62352-62371 | Msa1399990:intron | 55.0% |
| ! | GGTTGCAAGTTGAGAGTCCC+TGG | + | tig0022413:63135-63154 | Msa1399990:CDS | 55.0% |
| ! | TGCAAGTTGAGAGTCCCTGG+GGG | + | tig0022413:63138-63157 | Msa1399990:CDS | 55.0% |
| TGCAATGAGCACAACCCCCA+GGG | - | tig0022413:63155-63174 | None:intergenic | 55.0% | |
| TTGCAATGAGCACAACCCCC+AGG | - | tig0022413:63156-63175 | None:intergenic | 55.0% | |
| GGGGTTGTGCTCATTGCAAG+AGG | + | tig0022413:63157-63176 | Msa1399990:CDS | 55.0% | |
| GTGAGTTTGGCGTGTGCGTC+TGG | + | tig0022413:59527-59546 | Msa1399990:intron | 60.0% | |
| ACCCACCTTGTGTGCTCCAC+AGG | + | tig0022413:60690-60709 | Msa1399990:intron | 60.0% | |
| GCCGGAAATCATGGGGTGGT+GGG | - | tig0022413:61071-61090 | None:intergenic | 60.0% | |
| CAGCCTGGCCGGAAATCATG+GGG | - | tig0022413:61078-61097 | None:intergenic | 60.0% | |
| CTCAGCCTGGCCGGAAATCA+TGG | - | tig0022413:61080-61099 | None:intergenic | 60.0% | |
| CGAGGCGAAGGAGGTGGTAT+CGG | - | tig0022413:61366-61385 | None:intergenic | 60.0% | |
| GTTGCTGCTGATCGAGGCGA+AGG | - | tig0022413:61378-61397 | None:intergenic | 60.0% | |
| TCGCCTCGATCAGCAGCAAC+CGG | + | tig0022413:61378-61397 | Msa1399990:CDS | 60.0% | |
| ACACAGCTGCTTCGCCCTCT+CGG | - | tig0022413:61441-61460 | None:intergenic | 60.0% | |
| !! | TTTTGTTTGGGGGGTGGGGG+AGG | + | tig0022413:62355-62374 | Msa1399990:intron | 60.0% |
| GGCCGGAAATCATGGGGTGG+TGG | - | tig0022413:61072-61091 | None:intergenic | 65.0% | |
| CCTGGCCGGAAATCATGGGG+TGG | - | tig0022413:61075-61094 | None:intergenic | 65.0% | |
| CCACCCCATGATTTCCGGCC+AGG | + | tig0022413:61072-61091 | Msa1399990:intron | 65.0% | |
| GCTGATCGAGGCGAAGGAGG+TGG | - | tig0022413:61372-61391 | None:intergenic | 65.0% | |
| GCTGCTGATCGAGGCGAAGG+AGG | - | tig0022413:61375-61394 | None:intergenic | 65.0% | |
| ! | AGGCACGGATGCTGCCGGCT+AGG | + | tig0022413:61604-61623 | Msa1399990:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0022413 | gene | 58909 | 63770 | 58909 | ID=Msa1399990;Name=Msa1399990 |
| tig0022413 | mRNA | 58909 | 63770 | 58909 | ID=Msa1399990-mRNA-1;Parent=Msa1399990;Name=Msa1399990-mRNA-1;_AED=0.13;_eAED=0.13;_QI=236|1|1|1|1|1|6|312|370 |
| tig0022413 | exon | 58909 | 59125 | 58909 | ID=Msa1399990-mRNA-1:exon:17513;Parent=Msa1399990-mRNA-1 |
| tig0022413 | exon | 61311 | 61572 | 61311 | ID=Msa1399990-mRNA-1:exon:17514;Parent=Msa1399990-mRNA-1 |
| tig0022413 | exon | 61951 | 62081 | 61951 | ID=Msa1399990-mRNA-1:exon:17515;Parent=Msa1399990-mRNA-1 |
| tig0022413 | exon | 62517 | 62823 | 62517 | ID=Msa1399990-mRNA-1:exon:17516;Parent=Msa1399990-mRNA-1 |
| tig0022413 | exon | 62940 | 63250 | 62940 | ID=Msa1399990-mRNA-1:exon:17517;Parent=Msa1399990-mRNA-1 |
| tig0022413 | exon | 63338 | 63770 | 63338 | ID=Msa1399990-mRNA-1:exon:17518;Parent=Msa1399990-mRNA-1 |
| tig0022413 | five_prime_UTR | 58909 | 59125 | 58909 | ID=Msa1399990-mRNA-1:five_prime_utr;Parent=Msa1399990-mRNA-1 |
| tig0022413 | five_prime_UTR | 61311 | 61329 | 61311 | ID=Msa1399990-mRNA-1:five_prime_utr;Parent=Msa1399990-mRNA-1 |
| tig0022413 | CDS | 61330 | 61572 | 61330 | ID=Msa1399990-mRNA-1:cds;Parent=Msa1399990-mRNA-1 |
| tig0022413 | CDS | 61951 | 62081 | 61951 | ID=Msa1399990-mRNA-1:cds;Parent=Msa1399990-mRNA-1 |
| tig0022413 | CDS | 62517 | 62823 | 62517 | ID=Msa1399990-mRNA-1:cds;Parent=Msa1399990-mRNA-1 |
| tig0022413 | CDS | 62940 | 63250 | 62940 | ID=Msa1399990-mRNA-1:cds;Parent=Msa1399990-mRNA-1 |
| tig0022413 | CDS | 63338 | 63458 | 63338 | ID=Msa1399990-mRNA-1:cds;Parent=Msa1399990-mRNA-1 |
| tig0022413 | three_prime_UTR | 63459 | 63770 | 63459 | ID=Msa1399990-mRNA-1:three_prime_utr;Parent=Msa1399990-mRNA-1 |
| Gene Sequence |
| Protein sequence |
