AlfalfaGEDB | Msa1399990

M. sativa cultivar zhongmu-4 / Msa1399990

KEGG: -
GO: GO:0000151 GO:0000302 GO:0001101 GO:0003674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006355 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009266 GO:0009409 GO:0009611 GO:0009628 GO:0009636 GO:0009651 GO:0009719 GO:0009725 GO:0009733 GO:0009739 GO:0009751 GO:0009753 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010200 GO:0010243 GO:0010468 GO:0010498 GO:0010556 GO:0014070 GO:0016020 GO:0019005 GO:0019219 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0030162 GO:0030163 GO:0031090 GO:0031323 GO:0031326 GO:0031461 GO:0031625 GO:0032991 GO:0033993 GO:0042221 GO:0042493 GO:0042542 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046677 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051246 GO:0051252 GO:0051603 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0098588 GO:0098805 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141
PFAM: PF00651.34

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1399990	AES94554.2	97.554	368	9	0	3	370	47	414	0.0	754

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1399990	sp\|Q9FJX5\|BT4_ARATH	65.000	360	114	2	11	369	20	368	9.52e-177	498

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1399990	G7K3T4	97.554	368	9	0	3	370	47	414	0.0	754

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TFs/TRs:

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Gene ID	Type	Classification
Msa1399990	TR	TAZ

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0714000	Msa1399990	0.988982	3.318909e-176	-8.615850e-47
Msa0835330	Msa1399990	0.928652	2.133170e-92	-8.615850e-47
Msa1268580	Msa1399990	0.839223	1.802038e-57	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1399990	MtrunA17_Chr5g0401281	97.554	368	9	0	3	370	8	375	0.0	753
Msa1399990	MtrunA17_Chr4g0058071	44.781	297	159	5	63	355	17	312	5.75e-83	256
Msa1399990	MtrunA17_Chr3g0116501	38.725	204	124	1	131	334	1	203	1.46e-50	168
Msa1399990	MtrunA17_Chr4g0000031	34.426	122	66	4	243	364	1598	1705	3.63e-15	77.4
Msa1399990	MtrunA17_Chr3g0125321	29.412	153	101	3	76	226	97	244	5.51e-13	68.2
Msa1399990	MtrunA17_Chr5g0438991	38.356	73	44	1	273	345	886	957	1.30e-12	69.3
Msa1399990	MtrunA17_Chr3g0138411	39.506	81	47	2	274	353	1119	1198	4.42e-12	67.8
Msa1399990	MtrunA17_Chr6g0456861	38.889	72	43	1	274	345	692	762	6.86e-11	63.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1399990	AT5G67480.1	65.000	360	114	2	11	369	20	368	9.68e-178	498
Msa1399990	AT5G67480.3	65.000	360	114	2	11	369	20	368	9.68e-178	498
Msa1399990	AT5G67480.2	65.000	360	114	2	11	369	31	379	1.58e-177	498
Msa1399990	AT4G37610.1	60.976	328	126	2	41	367	34	360	8.77e-150	427
Msa1399990	AT1G05690.1	49.861	361	167	4	4	360	1	351	1.62e-110	327
Msa1399990	AT3G48360.1	43.789	322	163	8	56	361	28	347	2.28e-79	248
Msa1399990	AT5G63160.1	43.770	313	163	7	61	361	24	335	8.93e-76	239
Msa1399990	AT3G48360.2	45.862	290	142	6	56	331	28	316	1.60e-73	232
Msa1399990	AT5G63160.2	46.099	282	140	6	61	331	24	304	2.72e-71	225
Msa1399990	AT5G63160.3	45.020	251	127	7	120	361	2	250	8.63e-60	194

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Find 98 sgRNAs with CRISPR-Local

Find 278 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTCGTACTGCATCATG+TGG	0.623793	tig0022413:-62035	None:intergenic
AAAACTGTTTCGGAGTCAGA+AGG	0.543714	tig0022413:+62728	Msa1399990:CDS
AAAAGAAGAGAGGAATTCCG+GGG	0.681139	tig0022413:-59038	None:intergenic
AAAGAACTTCAAAACTGTTT+CGG	0.374386	tig0022413:+62718	Msa1399990:CDS
AAAGAAGAGAGGAATTCCGG+GGG	0.742234	tig0022413:-59037	None:intergenic
AAAGGAACTCTACAGAAATC+TGG	0.408140	tig0022413:-63222	None:intergenic
AAGAAATGAGAAAAGAAGAG+AGG	0.555753	tig0022413:-59048	None:intergenic
AAGCAAATCGTTCCAATCGG+TGG	0.607764	tig0022413:+61988	Msa1399990:CDS
AAGCAATTCAAGCCCTTTGC+AGG	0.347578	tig0022413:-63097	None:intergenic
AAGTAAACAATATATAGCAT+AGG	0.599958	tig0022413:+63592	Msa1399990:three_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TCTGTTTGAAGAGATTTCTA+CGG	-	tig0022413:58995-59014	None:intergenic	30.0%
AAGAAATGAGAAAAGAAGAG+AGG	-	tig0022413:59051-59070	None:intergenic	30.0%
AGTTCCAAACTTTCAATTCA+AGG	+	tig0022413:59077-59096	Msa1399990:five_prime_UTR	30.0%
ACTTCATGTTGAGATTTACA+TGG	+	tig0022413:59432-59451	Msa1399990:intron	30.0%
TACCTTACTGTATGTATGTT+TGG	+	tig0022413:59497-59516	Msa1399990:intron	30.0%
ATCCAAACATACATACAGTA+AGG	-	tig0022413:59502-59521	None:intergenic	30.0%
TTAGAGCTTCAATAGAATCA+AGG	-	tig0022413:59569-59588	None:intergenic	30.0%
TATTGTAATTCTGCCAAACT+CGG	+	tig0022413:59617-59636	Msa1399990:intron	30.0%
TCTTAGTGATCAATAGTTTC+TGG	+	tig0022413:59698-59717	Msa1399990:intron	30.0%
CTTAGTGATCAATAGTTTCT+GGG	+	tig0022413:59699-59718	Msa1399990:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0022413	gene	58909	63770	58909	ID=Msa1399990;Name=Msa1399990
tig0022413	mRNA	58909	63770	58909	ID=Msa1399990-mRNA-1;Parent=Msa1399990;Name=Msa1399990-mRNA-1;_AED=0.13;_eAED=0.13;_QI=236\|1\|1\|1\|1\|1\|6\|312\|370
tig0022413	exon	58909	59125	58909	ID=Msa1399990-mRNA-1:exon:17513;Parent=Msa1399990-mRNA-1
tig0022413	exon	61311	61572	61311	ID=Msa1399990-mRNA-1:exon:17514;Parent=Msa1399990-mRNA-1
tig0022413	exon	61951	62081	61951	ID=Msa1399990-mRNA-1:exon:17515;Parent=Msa1399990-mRNA-1
tig0022413	exon	62517	62823	62517	ID=Msa1399990-mRNA-1:exon:17516;Parent=Msa1399990-mRNA-1
tig0022413	exon	62940	63250	62940	ID=Msa1399990-mRNA-1:exon:17517;Parent=Msa1399990-mRNA-1
tig0022413	exon	63338	63770	63338	ID=Msa1399990-mRNA-1:exon:17518;Parent=Msa1399990-mRNA-1
tig0022413	five_prime_UTR	58909	59125	58909	ID=Msa1399990-mRNA-1:five_prime_utr;Parent=Msa1399990-mRNA-1
tig0022413	five_prime_UTR	61311	61329	61311	ID=Msa1399990-mRNA-1:five_prime_utr;Parent=Msa1399990-mRNA-1
tig0022413	CDS	61330	61572	61330	ID=Msa1399990-mRNA-1:cds;Parent=Msa1399990-mRNA-1
tig0022413	CDS	61951	62081	61951	ID=Msa1399990-mRNA-1:cds;Parent=Msa1399990-mRNA-1
tig0022413	CDS	62517	62823	62517	ID=Msa1399990-mRNA-1:cds;Parent=Msa1399990-mRNA-1
tig0022413	CDS	62940	63250	62940	ID=Msa1399990-mRNA-1:cds;Parent=Msa1399990-mRNA-1
tig0022413	CDS	63338	63458	63338	ID=Msa1399990-mRNA-1:cds;Parent=Msa1399990-mRNA-1
tig0022413	three_prime_UTR	63459	63770	63459	ID=Msa1399990-mRNA-1:three_prime_utr;Parent=Msa1399990-mRNA-1

Gene Sequence

>Msa1399990

ATGGCTAACATTCGGAATGCTAAGAAATTCATTCCGATACCACCTCCTTCGCCTCGATCAGCAGCAACCGGTTATCCTTGCGAGTATGCGGCGATGAATAATTTATCACCGAGAGGGCGAAGCAGCTGTGTCTCTTCTGCAACAAGAGATCTGTGGGAGCGTCTTTTCAATGAAGGGTATAAAGCCGATGTTTGCATTAATACTGATAACGGTGGCATTGTTTATGCTCATTCTAACATTATTGCGGTGGCTTCTCCTGTATTGAGAGGCATGCTGAAGCAAGCAAATCGTTCCAATCGGTGGCGATCGATCTCAATCTTTGGGGTTCCACATGATGCAGTACGAGTTTTTATTCGATATTTGTATTCTTCCTGTTACGAGAAAGAAGAAATGAAGGAATTTGTCCTACATTTGTTGGTGCTTTCTCATGTATACGCAGTCCCTCACTTGAAGCGTGAATGTGAACAGAAGCTAGAATTGGGTTTACTCACCGTGGATAATCTAGTTGATGTATTTCAACTTGCATTACTGTGTGATGCTCCGCGGCTCAGTCTCATTTGTCACCGTAAAATACTAAAGAACTTCAAAACTGTTTCGGAGTCAGAAGGATGGAAAGCAATGAAGCAGAGTCACCCAGTTCTAGAAAAGGAAATTCTGGAATCAATGATTGAAGAAGAAAATAGTAAGAAGGAGAGGATCAGAAAAATGAATGAAAGAGAGGTCTATTTGCAATTATACGATGCAATGGAAGCTCTAGTTCACATTTGTAGAGATGGTTGTCGAACTATTGGCCCGCATGATAAAGACTTCAAAGCAAACCAGCCGTGTAGGTATACTTCCTGCAAAGGGCTTGAATTGCTTGTTCGTCATTTTGCTGGTTGCAAGTTGAGAGTCCCTGGGGGTTGTGCTCATTGCAAGAGGATGTGGCAACTGTTGGAGCTGCATTCTCGACTGTGTGCTGATCCAGATTTCTGTAGAGTTCCTTTGTGCAGGAACTTTAAGCAGAGAATAGCAAAACAAAGCAAGAAAGACGAAATTAGATGGACAATTTTGGTTGAAAAGATCTTGAAAACAAGAGGAATTGGGATTGCACCATGCTTTCGGCCACAATGA

Protein sequence

>Msa1399990

MANIRNAKKFIPIPPPSPRSAATGYPCEYAAMNNLSPRGRSSCVSSATRDLWERLFNEGYKADVCINTDNGGIVYAHSNIIAVASPVLRGMLKQANRSNRWRSISIFGVPHDAVRVFIRYLYSSCYEKEEMKEFVLHLLVLSHVYAVPHLKRECEQKLELGLLTVDNLVDVFQLALLCDAPRLSLICHRKILKNFKTVSESEGWKAMKQSHPVLEKEILESMIEEENSKKERIRKMNEREVYLQLYDAMEALVHICRDGCRTIGPHDKDFKANQPCRYTSCKGLELLVRHFAGCKLRVPGGCAHCKRMWQLLELHSRLCADPDFCRVPLCRNFKQRIAKQSKKDEIRWTILVEKILKTRGIGIAPCFRPQ*