Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1269740 | Msa1302830 | 0.804537 | 2.060319e-49 | -8.615850e-47 |
| Msa1129350 | Msa1269740 | 0.953627 | 1.805983e-111 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 58 sgRNAs with CRISPR-Local
Find 184 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAAGCAATTCAAATTATTA+TGG | 0.202169 | 8_3:-2911622 | None:intergenic |
| TTGTACAGATGTGGTGTTTA+TGG | 0.222984 | 8_3:-2911877 | None:intergenic |
| AAACAACATGCAATGTAATA+TGG | 0.227403 | 8_3:+2915000 | Msa1269740:CDS |
| AATCACAATTGTAAATAATT+AGG | 0.257693 | 8_3:+2915339 | Msa1269740:three_prime_UTR |
| GCCTTGAAAATGATATTTAT+TGG | 0.266345 | 8_3:-2911652 | None:intergenic |
| TTTACCATGTTTAGATGAAT+AGG | 0.292001 | 8_3:+2915123 | Msa1269740:three_prime_UTR |
| TAGGTGTTTCTACAAATTAT+TGG | 0.298561 | 8_3:+2915358 | Msa1269740:three_prime_UTR |
| GAGTTGATTCCACTGATTAC+AGG | 0.300973 | 8_3:-2915167 | None:intergenic |
| CGATTTCCAGCATGAGAATA+GGG | 0.302466 | 8_3:-2911808 | None:intergenic |
| TTAATGTCTGAAAATAAATT+AGG | 0.316114 | 8_3:-2911756 | None:intergenic |
| TGTTGGGCGGGGCATGTATT+GGG | 0.325541 | 8_3:-2911715 | None:intergenic |
| GTGTTGGGCGGGGCATGTAT+TGG | 0.333468 | 8_3:-2911716 | None:intergenic |
| TGAATTTGAATTGAGTGAAT+TGG | 0.345640 | 8_3:-2911901 | None:intergenic |
| CTCAAGTTTGTTCACTTTGA+GGG | 0.377609 | 8_3:-2911840 | None:intergenic |
| GAATTTGAATTGAGTGAATT+GGG | 0.399083 | 8_3:-2911900 | None:intergenic |
| GCTCAAGTTTGTTCACTTTG+AGG | 0.409571 | 8_3:-2911841 | None:intergenic |
| TTGAAAACGTTCAATAGATT+AGG | 0.411829 | 8_3:+2913923 | Msa1269740:CDS |
| GCGATTTCCAGCATGAGAAT+AGG | 0.414894 | 8_3:-2911809 | None:intergenic |
| AAATAAATTAGGTAAAGGTT+TGG | 0.428046 | 8_3:-2911745 | None:intergenic |
| ATTAGAGAAATTGTTTATGA+AGG | 0.429158 | 8_3:+2913167 | Msa1269740:CDS |
| ATCGGAATCGGAATCGGAAT+CGG | 0.432857 | 8_3:+2912014 | Msa1269740:five_prime_UTR |
| GATTCCACTGCAATCGGAAT+CGG | 0.437473 | 8_3:+2912002 | Msa1269740:five_prime_UTR |
| GAGTGGTAAGCAAGATCATT+GGG | 0.444164 | 8_3:+2914900 | Msa1269740:intron |
| ACTGCAATCGGAATCGGAAT+CGG | 0.460040 | 8_3:+2912008 | Msa1269740:five_prime_UTR |
| AACAACATGCAATGTAATAT+GGG | 0.470425 | 8_3:+2915001 | Msa1269740:CDS |
| AAGGTTTGGACTTTAGTGTT+GGG | 0.474163 | 8_3:-2911731 | None:intergenic |
| TCTGAAAATAAATTAGGTAA+AGG | 0.480528 | 8_3:-2911750 | None:intergenic |
| TGTTTCTACAAATTATTGGC+TGG | 0.484434 | 8_3:+2915362 | Msa1269740:three_prime_UTR |
| TTCATCGATTCCACTGCAAT+CGG | 0.486542 | 8_3:+2911996 | Msa1269740:five_prime_UTR |
| AGAGTGGTAAGCAAGATCAT+TGG | 0.494223 | 8_3:+2914899 | Msa1269740:intron |
| AAAGGTTTGGACTTTAGTGT+TGG | 0.498710 | 8_3:-2911732 | None:intergenic |
| TGGGTGAGTGTTACCATGCA+TGG | 0.501293 | 8_3:+2915079 | Msa1269740:three_prime_UTR |
| TTTGGACTTTAGTGTTGGGC+GGG | 0.511349 | 8_3:-2911727 | None:intergenic |
| TGAAAATGATATTTATTGGA+GGG | 0.516527 | 8_3:-2911648 | None:intergenic |
| GGTATGGCATTTATGCATCA+AGG | 0.528066 | 8_3:+2913900 | Msa1269740:intron |
| TGAATATAGACTCAAAGGTA+TGG | 0.529939 | 8_3:+2914119 | Msa1269740:CDS |
| TTGAAAATGATATTTATTGG+AGG | 0.534223 | 8_3:-2911649 | None:intergenic |
| CAAATCTCCAATGTAAAATG+AGG | 0.535975 | 8_3:+2911692 | Msa1269740:five_prime_UTR |
| ATCTGTACAGAGAGATTGAA+GGG | 0.544306 | 8_3:-2911938 | None:intergenic |
| AATCTGTACAGAGAGATTGA+AGG | 0.555137 | 8_3:-2911939 | None:intergenic |
| GGGTGAGTGTTACCATGCAT+GGG | 0.562223 | 8_3:+2915080 | Msa1269740:three_prime_UTR |
| GTTTAGATGAATAGGCTGCT+AGG | 0.566332 | 8_3:+2915131 | Msa1269740:three_prime_UTR |
| ATGGTTGAATATAGACTCAA+AGG | 0.569631 | 8_3:+2914114 | Msa1269740:CDS |
| GACTCAAAGGTATGGACAAG+AGG | 0.585553 | 8_3:+2914127 | Msa1269740:CDS |
| AAACTTAGTCCTGTAATCAG+TGG | 0.589365 | 8_3:+2915158 | Msa1269740:three_prime_UTR |
| AACTTTGAGATGCCCATGCA+TGG | 0.602005 | 8_3:-2915092 | None:intergenic |
| GTACAGAGAGATTGAAGGGG+AGG | 0.605456 | 8_3:-2911934 | None:intergenic |
| GTTTGGACTTTAGTGTTGGG+CGG | 0.606270 | 8_3:-2911728 | None:intergenic |
| GATTTCCAGCATGAGAATAG+GGG | 0.617353 | 8_3:-2911807 | None:intergenic |
| TTGGACTTTAGTGTTGGGCG+GGG | 0.619820 | 8_3:-2911726 | None:intergenic |
| GATTCCGATTCCGATTGCAG+TGG | 0.622227 | 8_3:-2912006 | None:intergenic |
| TGGAATCGATGAATGTGAAG+AGG | 0.630958 | 8_3:-2911986 | None:intergenic |
| AACATGCAATGTAATATGGG+AGG | 0.646613 | 8_3:+2915004 | Msa1269740:CDS |
| TGAATTGGGTTGTACAGATG+TGG | 0.651702 | 8_3:-2911886 | None:intergenic |
| TATTCGAAATAGAGACGATG+AGG | 0.654737 | 8_3:+2913292 | Msa1269740:CDS |
| GCAGCCTATTCATCTAAACA+TGG | 0.669604 | 8_3:-2915127 | None:intergenic |
| TATTTGAGATAATGACCATG+AGG | 0.675520 | 8_3:+2912980 | Msa1269740:exon |
| TCTGTACAGAGAGATTGAAG+GGG | 0.705838 | 8_3:-2911937 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATGTTTGTTTTTTTTTTTT+AGG | - | chr8_3:2912374-2912393 | None:intergenic | 10.0% |
| !! | TTTAAAAATTGGAAAAATAG+AGG | - | chr8_3:2911582-2911601 | None:intergenic | 15.0% |
| !!! | AATGTTGATGATTTAAAAAT+TGG | - | chr8_3:2911593-2911612 | None:intergenic | 15.0% |
| !! | TTAAGCAATTCAAATTATTA+TGG | - | chr8_3:2911625-2911644 | None:intergenic | 15.0% |
| !! | TTAATGTCTGAAAATAAATT+AGG | - | chr8_3:2911759-2911778 | None:intergenic | 15.0% |
| !! | AATAAATCATAGGAAAATTA+TGG | - | chr8_3:2912273-2912292 | None:intergenic | 15.0% |
| !! | ATCAGAAATAAATAAATCAT+AGG | - | chr8_3:2912283-2912302 | None:intergenic | 15.0% |
| !!! | TGATTGATATTTTAGATTAT+TGG | + | chr8_3:2912299-2912318 | Msa1269740:intron | 15.0% |
| !!! | GATTGATATTTTAGATTATT+GGG | + | chr8_3:2912300-2912319 | Msa1269740:intron | 15.0% |
| !!! | TATTTACTTTTATCGATTTT+CGG | + | chr8_3:2913127-2913146 | Msa1269740:CDS | 15.0% |
| !!! | TCATTTAGGTTTTTTTTAAT+TGG | + | chr8_3:2913824-2913843 | Msa1269740:intron | 15.0% |
| !!! | TTGTTCTCTATTTTATTTTA+TGG | + | chr8_3:2914154-2914173 | Msa1269740:intron | 15.0% |
| !!! | TGTTCTCTATTTTATTTTAT+GGG | + | chr8_3:2914155-2914174 | Msa1269740:intron | 15.0% |
| !! | AAAAAAACTATATGTATACA+TGG | - | chr8_3:2914679-2914698 | None:intergenic | 15.0% |
| !! | AATCACAATTGTAAATAATT+AGG | + | chr8_3:2915339-2915358 | Msa1269740:three_prime_UTR | 15.0% |
| !! | TGAAAATGATATTTATTGGA+GGG | - | chr8_3:2911651-2911670 | None:intergenic | 20.0% |
| !! | TTGAAAATGATATTTATTGG+AGG | - | chr8_3:2911652-2911671 | None:intergenic | 20.0% |
| !!! | TCCAATAAATATCATTTTCA+AGG | + | chr8_3:2911651-2911670 | Msa1269740:five_prime_UTR | 20.0% |
| !! | AAATAAATTAGGTAAAGGTT+TGG | - | chr8_3:2911748-2911767 | None:intergenic | 20.0% |
| !! | TCTGAAAATAAATTAGGTAA+AGG | - | chr8_3:2911753-2911772 | None:intergenic | 20.0% |
| !! | TTAATTGCAAAAATCTGAAA+AGG | + | chr8_3:2911775-2911794 | Msa1269740:five_prime_UTR | 20.0% |
| !! | TAATTGCAAAAATCTGAAAA+GGG | + | chr8_3:2911776-2911795 | Msa1269740:five_prime_UTR | 20.0% |
| !! | TATTCTTGAGAAAAGAATAT+AGG | + | chr8_3:2912495-2912514 | Msa1269740:intron | 20.0% |
| !! | TTCTCTTTATCTTGATTATA+TGG | - | chr8_3:2912812-2912831 | None:intergenic | 20.0% |
| !! | ATATAATCAAGATAAAGAGA+AGG | + | chr8_3:2912811-2912830 | Msa1269740:intron | 20.0% |
| !! | TATAATCAAGATAAAGAGAA+GGG | + | chr8_3:2912812-2912831 | Msa1269740:intron | 20.0% |
| !! | TCATAGATACATACATAATT+AGG | + | chr8_3:2912876-2912895 | Msa1269740:intron | 20.0% |
| !! | ATTAGAGAAATTGTTTATGA+AGG | + | chr8_3:2913167-2913186 | Msa1269740:CDS | 20.0% |
| !!! | ATTCTTCTTTTTCATTGTTT+TGG | + | chr8_3:2913239-2913258 | Msa1269740:intron | 20.0% |
| !! | AGAAAGAGTAAAAGAAAAAT+CGG | - | chr8_3:2913358-2913377 | None:intergenic | 20.0% |
| !! | CAAATTTCAAAACATAGTAT+GGG | + | chr8_3:2913387-2913406 | Msa1269740:intron | 20.0% |
| !!! | CTAACATGATTTAAAATGAT+AGG | + | chr8_3:2913574-2913593 | Msa1269740:intron | 20.0% |
| !!! | CTTTTTTTTAAATGTACATG+CGG | + | chr8_3:2913626-2913645 | Msa1269740:intron | 20.0% |
| !!! | ATATATTTTGTCTGTTGTTT+TGG | - | chr8_3:2913717-2913736 | None:intergenic | 20.0% |
| !! | ACAGACAAAATATATTTGTA+AGG | + | chr8_3:2913722-2913741 | Msa1269740:intron | 20.0% |
| !! | AAAATATATTTGTAAGGTAC+TGG | + | chr8_3:2913728-2913747 | Msa1269740:intron | 20.0% |
| !! | AGAAATTGATACAAACTTAA+CGG | - | chr8_3:2913800-2913819 | None:intergenic | 20.0% |
| !!! | TGATAATGAAATATAAAGTC+AGG | - | chr8_3:2913987-2914006 | None:intergenic | 20.0% |
| !!! | TTCATTATCAATTATTTTCC+TGG | + | chr8_3:2913997-2914016 | Msa1269740:intron | 20.0% |
| !!! | TCATTATCAATTATTTTCCT+GGG | + | chr8_3:2913998-2914017 | Msa1269740:intron | 20.0% |
| !! | AAATAAAGATTGTAGAAAAC+AGG | - | chr8_3:2914240-2914259 | None:intergenic | 20.0% |
| !! | AGCTTACTAAAAAATGAATA+CGG | + | chr8_3:2914371-2914390 | Msa1269740:intron | 20.0% |
| !!! | TAGTGAATTATTTTGATAGT+TGG | - | chr8_3:2914403-2914422 | None:intergenic | 20.0% |
| !! | ACTATCAAAATAATTCACTA+AGG | + | chr8_3:2914403-2914422 | Msa1269740:intron | 20.0% |
| !! | TTAATAGAGTATATCACATA+TGG | - | chr8_3:2914477-2914496 | None:intergenic | 20.0% |
| !! | GAGATATAAGTATATATAGT+TGG | - | chr8_3:2914755-2914774 | None:intergenic | 20.0% |
| !!! | TGTTATTTTTCTATGTTCAA+GGG | + | chr8_3:2914782-2914801 | Msa1269740:intron | 20.0% |
| !!! | GTTATATTTTGTTGCAAATT+TGG | + | chr8_3:2914957-2914976 | Msa1269740:CDS | 20.0% |
| ! | GCCTTGAAAATGATATTTAT+TGG | - | chr8_3:2911655-2911674 | None:intergenic | 25.0% |
| ! | GAATTTGAATTGAGTGAATT+GGG | - | chr8_3:2911903-2911922 | None:intergenic | 25.0% |
| ! | TGAATTTGAATTGAGTGAAT+TGG | - | chr8_3:2911904-2911923 | None:intergenic | 25.0% |
| ! | CAGGAATTCAAAAACAAAAA+TGG | - | chr8_3:2912097-2912116 | None:intergenic | 25.0% |
| ! | ATATAGTTTGAACATGAACA+TGG | - | chr8_3:2912122-2912141 | None:intergenic | 25.0% |
| !! | TATTTGTTGCTGTTATAGTT+CGG | + | chr8_3:2912170-2912189 | Msa1269740:intron | 25.0% |
| ! | TCAATACAATTGAATCTACA+AGG | + | chr8_3:2912234-2912253 | Msa1269740:intron | 25.0% |
| !!! | TCATTATTGTGTTTTGAGTA+CGG | + | chr8_3:2912422-2912441 | Msa1269740:intron | 25.0% |
| ! | TAAGTGATCTAAATGATCAA+TGG | + | chr8_3:2912536-2912555 | Msa1269740:intron | 25.0% |
| !!! | ATGATCAATGGACTTTTTAT+TGG | + | chr8_3:2912548-2912567 | Msa1269740:intron | 25.0% |
| !! | ATACATAGCTTTACATAGAT+CGG | - | chr8_3:2912620-2912639 | None:intergenic | 25.0% |
| !! | AATTCCACAGAAAATTCTTT+TGG | + | chr8_3:2912647-2912666 | Msa1269740:intron | 25.0% |
| !! | AAAACCAAAAGAATTTTCTG+TGG | - | chr8_3:2912654-2912673 | None:intergenic | 25.0% |
| ! | TTATCTTGATTATATGGATG+TGG | - | chr8_3:2912806-2912825 | None:intergenic | 25.0% |
| !!! | TTTCAATTGGTCTTTGTATT+TGG | + | chr8_3:2913057-2913076 | Msa1269740:intron | 25.0% |
| ! | ATATATACCAAACTGAAAGA+AGG | - | chr8_3:2913110-2913129 | None:intergenic | 25.0% |
| ! | AATGTCAGCTATAAAACAAA+AGG | - | chr8_3:2913204-2913223 | None:intergenic | 25.0% |
| ! | CAACAAAATAAGTCAAACAT+GGG | - | chr8_3:2913329-2913348 | None:intergenic | 25.0% |
| ! | ACAACAAAATAAGTCAAACA+TGG | - | chr8_3:2913330-2913349 | None:intergenic | 25.0% |
| !!! | CCATACTATGTTTTGAAATT+TGG | - | chr8_3:2913389-2913408 | None:intergenic | 25.0% |
| ! | CCAAATTTCAAAACATAGTA+TGG | + | chr8_3:2913386-2913405 | Msa1269740:intron | 25.0% |
| !! | GTCAATTATGTTTTTCTCAT+TGG | - | chr8_3:2913444-2913463 | None:intergenic | 25.0% |
| !!! | ACACGCTTTAAACTTTATTT+TGG | + | chr8_3:2913753-2913772 | Msa1269740:intron | 25.0% |
| ! | ATCAATTTCTACGTTCATTT+AGG | + | chr8_3:2913810-2913829 | Msa1269740:intron | 25.0% |
| ! | TTGAAAACGTTCAATAGATT+AGG | + | chr8_3:2913923-2913942 | Msa1269740:CDS | 25.0% |
| !!! | ATAGATTAGGAGCTATTTTA+AGG | + | chr8_3:2913936-2913955 | Msa1269740:CDS | 25.0% |
| ! | ATCCAAAAAAACTACCAAAA+AGG | - | chr8_3:2914035-2914054 | None:intergenic | 25.0% |
| !!! | TTTGGTAGTTTTTTTGGATT+AGG | + | chr8_3:2914036-2914055 | Msa1269740:intron | 25.0% |
| !!! | TTGGTAGTTTTTTTGGATTA+GGG | + | chr8_3:2914037-2914056 | Msa1269740:intron | 25.0% |
| ! | TATAATATACAGATCCACAA+AGG | - | chr8_3:2914271-2914290 | None:intergenic | 25.0% |
| ! | GCTTACTAAAAAATGAATAC+GGG | + | chr8_3:2914372-2914391 | Msa1269740:intron | 25.0% |
| !! | GTTTTTGAATTCGTTACAAA+GGG | - | chr8_3:2914563-2914582 | None:intergenic | 25.0% |
| !!! | TGTTTTTGAATTCGTTACAA+AGG | - | chr8_3:2914564-2914583 | None:intergenic | 25.0% |
| ! | TTGTAACGAATTCAAAAACA+CGG | + | chr8_3:2914564-2914583 | Msa1269740:intron | 25.0% |
| !! | ATTCCTGTATCGTTTTATAT+TGG | + | chr8_3:2914723-2914742 | Msa1269740:intron | 25.0% |
| !! | TTCCTGTATCGTTTTATATT+GGG | + | chr8_3:2914724-2914743 | Msa1269740:intron | 25.0% |
| !!! | GTGTTATTTTTCTATGTTCA+AGG | + | chr8_3:2914781-2914800 | Msa1269740:intron | 25.0% |
| ! | AAACAACATGCAATGTAATA+TGG | + | chr8_3:2915000-2915019 | Msa1269740:CDS | 25.0% |
| ! | AACAACATGCAATGTAATAT+GGG | + | chr8_3:2915001-2915020 | Msa1269740:CDS | 25.0% |
| !! | AGCACATTTTATGTAGATTT+TGG | + | chr8_3:2915045-2915064 | Msa1269740:exon | 25.0% |
| ! | TTTACCATGTTTAGATGAAT+AGG | + | chr8_3:2915123-2915142 | Msa1269740:three_prime_UTR | 25.0% |
| ! | CAACAATACATAAAAAGAGA+GGG | - | chr8_3:2915259-2915278 | None:intergenic | 25.0% |
| ! | ACAACAATACATAAAAAGAG+AGG | - | chr8_3:2915260-2915279 | None:intergenic | 25.0% |
| !! | TAGGTGTTTCTACAAATTAT+TGG | + | chr8_3:2915358-2915377 | Msa1269740:three_prime_UTR | 25.0% |
| CAAATCTCCAATGTAAAATG+AGG | + | chr8_3:2911692-2911711 | Msa1269740:five_prime_UTR | 30.0% | |
| CTATAACAGCAACAAATAGA+GGG | - | chr8_3:2912168-2912187 | None:intergenic | 30.0% | |
| ACTATAACAGCAACAAATAG+AGG | - | chr8_3:2912169-2912188 | None:intergenic | 30.0% | |
| GGAAAATTATGGAGTATATG+TGG | - | chr8_3:2912262-2912281 | None:intergenic | 30.0% | |
| ACTAAATCAGCAAAATAGCA+AGG | - | chr8_3:2912454-2912473 | None:intergenic | 30.0% | |
| ! | TTTTCTTTCACACTCTATGT+CGG | + | chr8_3:2912673-2912692 | Msa1269740:intron | 30.0% |
| AAACACAAAAATCTGAACAG+CGG | - | chr8_3:2912726-2912745 | None:intergenic | 30.0% | |
| ! | GCACTCATATTTCAATGTTT+TGG | + | chr8_3:2912921-2912940 | Msa1269740:intron | 30.0% |
| ! | TATTTGAGATAATGACCATG+AGG | + | chr8_3:2912980-2912999 | Msa1269740:exon | 30.0% |
| TAAGAAATGAAGTTACCTCA+TGG | - | chr8_3:2912998-2913017 | None:intergenic | 30.0% | |
| TGATTCTCCTTTCTTTCAAT+TGG | + | chr8_3:2913044-2913063 | Msa1269740:intron | 30.0% | |
| ACAAAGACCAATTGAAAGAA+AGG | - | chr8_3:2913054-2913073 | None:intergenic | 30.0% | |
| ATTTGTACCTTCTTTCAGTT+TGG | + | chr8_3:2913100-2913119 | Msa1269740:intron | 30.0% | |
| AAGAAGAATCAGAACACAAA+TGG | - | chr8_3:2913228-2913247 | None:intergenic | 30.0% | |
| GGAGATATGTAGTATGATTA+GGG | + | chr8_3:2913408-2913427 | Msa1269740:intron | 30.0% | |
| CACTCTAAATCATGTGAAAT+TGG | + | chr8_3:2913659-2913678 | Msa1269740:intron | 30.0% | |
| ACGGTACAAAAAAATAGACA+TGG | - | chr8_3:2913781-2913800 | None:intergenic | 30.0% | |
| ! | GTTGATGAGTTTGATGATAT+AGG | + | chr8_3:2913879-2913898 | Msa1269740:intron | 30.0% |
| ! | TGAGTTTGATGATATAGGTA+TGG | + | chr8_3:2913884-2913903 | Msa1269740:intron | 30.0% |
| AAAAGGACATAAAAATTCCC+AGG | - | chr8_3:2914018-2914037 | None:intergenic | 30.0% | |
| ! | GGGAATTTTTATGTCCTTTT+TGG | + | chr8_3:2914018-2914037 | Msa1269740:intron | 30.0% |
| !! | GTCCTTTTTGGTAGTTTTTT+TGG | + | chr8_3:2914030-2914049 | Msa1269740:intron | 30.0% |
| ATGGTTGAATATAGACTCAA+AGG | + | chr8_3:2914114-2914133 | Msa1269740:CDS | 30.0% | |
| TGAATATAGACTCAAAGGTA+TGG | + | chr8_3:2914119-2914138 | Msa1269740:CDS | 30.0% | |
| TGTAACGAATTCAAAAACAC+GGG | + | chr8_3:2914565-2914584 | Msa1269740:intron | 30.0% | |
| TACCCAATATAAAACGATAC+AGG | - | chr8_3:2914729-2914748 | None:intergenic | 30.0% | |
| !! | GCAAATTTGGCTGTTTTATT+TGG | + | chr8_3:2914970-2914989 | Msa1269740:CDS | 30.0% |
| ! | TGTTTCTACAAATTATTGGC+TGG | + | chr8_3:2915362-2915381 | Msa1269740:three_prime_UTR | 30.0% |
| ! | TATTGGGCCTCATTTTACAT+TGG | - | chr8_3:2911702-2911721 | None:intergenic | 35.0% |
| AAGGTTTGGACTTTAGTGTT+GGG | - | chr8_3:2911734-2911753 | None:intergenic | 35.0% | |
| AAAGGTTTGGACTTTAGTGT+TGG | - | chr8_3:2911735-2911754 | None:intergenic | 35.0% | |
| ! | CTCAAGTTTGTTCACTTTGA+GGG | - | chr8_3:2911843-2911862 | None:intergenic | 35.0% |
| TTGTACAGATGTGGTGTTTA+TGG | - | chr8_3:2911880-2911899 | None:intergenic | 35.0% | |
| ATCTGTACAGAGAGATTGAA+GGG | - | chr8_3:2911941-2911960 | None:intergenic | 35.0% | |
| AATCTGTACAGAGAGATTGA+AGG | - | chr8_3:2911942-2911961 | None:intergenic | 35.0% | |
| TTTGAACATGAACATGGATC+AGG | - | chr8_3:2912116-2912135 | None:intergenic | 35.0% | |
| ATGAAGACATAGTTCGAACT+TGG | - | chr8_3:2912213-2912232 | None:intergenic | 35.0% | |
| !!! | TTTTGGCAGATTTTGAAGCA+TGG | + | chr8_3:2913256-2913275 | Msa1269740:intron | 35.0% |
| TATTCGAAATAGAGACGATG+AGG | + | chr8_3:2913292-2913311 | Msa1269740:CDS | 35.0% | |
| GGGAGATATGTAGTATGATT+AGG | + | chr8_3:2913407-2913426 | Msa1269740:intron | 35.0% | |
| ! | TAAGCAGTTTTCAGTTCTCA+CGG | + | chr8_3:2914088-2914107 | Msa1269740:intron | 35.0% |
| ! | TTATTTTCCCGTTTCCTTTG+TGG | + | chr8_3:2914254-2914273 | Msa1269740:intron | 35.0% |
| ATACAGATCCACAAAGGAAA+CGG | - | chr8_3:2914265-2914284 | None:intergenic | 35.0% | |
| ATATCACATATGGAAGAGTG+TGG | - | chr8_3:2914467-2914486 | None:intergenic | 35.0% | |
| AGGCGACATGATATAGTATA+TGG | + | chr8_3:2914588-2914607 | Msa1269740:intron | 35.0% | |
| !!! | ATGTTCTGTTTTTTGCAGAG+TGG | + | chr8_3:2914883-2914902 | Msa1269740:intron | 35.0% |
| AACATGCAATGTAATATGGG+AGG | + | chr8_3:2915004-2915023 | Msa1269740:CDS | 35.0% | |
| AAACTTAGTCCTGTAATCAG+TGG | + | chr8_3:2915158-2915177 | Msa1269740:three_prime_UTR | 35.0% | |
| GATTTCCAGCATGAGAATAG+GGG | - | chr8_3:2911810-2911829 | None:intergenic | 40.0% | |
| CGATTTCCAGCATGAGAATA+GGG | - | chr8_3:2911811-2911830 | None:intergenic | 40.0% | |
| ! | GCTCAAGTTTGTTCACTTTG+AGG | - | chr8_3:2911844-2911863 | None:intergenic | 40.0% |
| ! | TGAATTGGGTTGTACAGATG+TGG | - | chr8_3:2911889-2911908 | None:intergenic | 40.0% |
| TCTGTACAGAGAGATTGAAG+GGG | - | chr8_3:2911940-2911959 | None:intergenic | 40.0% | |
| TGGAATCGATGAATGTGAAG+AGG | - | chr8_3:2911989-2912008 | None:intergenic | 40.0% | |
| !! | TTCATCGATTCCACTGCAAT+CGG | + | chr8_3:2911996-2912015 | Msa1269740:five_prime_UTR | 40.0% |
| !! | ATTTTCGAAAAAGCGCACGA+CGG | + | chr8_3:2912048-2912067 | Msa1269740:five_prime_UTR | 40.0% |
| ! | TTTCACACTCTATGTCGGTT+TGG | + | chr8_3:2912678-2912697 | Msa1269740:intron | 40.0% |
| CCTTCAATCAAGCAACATGT+AGG | - | chr8_3:2912769-2912788 | None:intergenic | 40.0% | |
| ! | CCTACATGTTGCTTGATTGA+AGG | + | chr8_3:2912766-2912785 | Msa1269740:intron | 40.0% |
| ATTAACAGCTTAAGCGTTCG+TGG | - | chr8_3:2913511-2913530 | None:intergenic | 40.0% | |
| ! | TTTTGGCATACAGTGTGTGT+TGG | - | chr8_3:2913700-2913719 | None:intergenic | 40.0% |
| GGTATGGCATTTATGCATCA+AGG | + | chr8_3:2913900-2913919 | Msa1269740:intron | 40.0% | |
| ! | AAGCAGTTTTCAGTTCTCAC+GGG | + | chr8_3:2914089-2914108 | Msa1269740:intron | 40.0% |
| TACAGATCCACAAAGGAAAC+GGG | - | chr8_3:2914264-2914283 | None:intergenic | 40.0% | |
| AACGAATTCAAAAACACGGG+AGG | + | chr8_3:2914568-2914587 | Msa1269740:intron | 40.0% | |
| AGAGTGGTAAGCAAGATCAT+TGG | + | chr8_3:2914899-2914918 | Msa1269740:intron | 40.0% | |
| GAGTGGTAAGCAAGATCATT+GGG | + | chr8_3:2914900-2914919 | Msa1269740:intron | 40.0% | |
| !!! | AGATTTTGGCTGTCATTGCT+TGG | + | chr8_3:2915059-2915078 | Msa1269740:exon | 40.0% |
| !!! | GATTTTGGCTGTCATTGCTT+GGG | + | chr8_3:2915060-2915079 | Msa1269740:exon | 40.0% |
| GCAGCCTATTCATCTAAACA+TGG | - | chr8_3:2915130-2915149 | None:intergenic | 40.0% | |
| GTTTAGATGAATAGGCTGCT+AGG | + | chr8_3:2915131-2915150 | Msa1269740:three_prime_UTR | 40.0% | |
| ! | GAGTTGATTCCACTGATTAC+AGG | - | chr8_3:2915170-2915189 | None:intergenic | 40.0% |
| ! | TTTGGACTTTAGTGTTGGGC+GGG | - | chr8_3:2911730-2911749 | None:intergenic | 45.0% |
| ! | GTTTGGACTTTAGTGTTGGG+CGG | - | chr8_3:2911731-2911750 | None:intergenic | 45.0% |
| ! | CTTTTCCCCTATTCTCATGC+TGG | + | chr8_3:2911802-2911821 | Msa1269740:five_prime_UTR | 45.0% |
| GCGATTTCCAGCATGAGAAT+AGG | - | chr8_3:2911812-2911831 | None:intergenic | 45.0% | |
| GATTCCACTGCAATCGGAAT+CGG | + | chr8_3:2912002-2912021 | Msa1269740:five_prime_UTR | 45.0% | |
| ACTGCAATCGGAATCGGAAT+CGG | + | chr8_3:2912008-2912027 | Msa1269740:five_prime_UTR | 45.0% | |
| ATCGGAATCGGAATCGGAAT+CGG | + | chr8_3:2912014-2912033 | Msa1269740:five_prime_UTR | 45.0% | |
| TCTGAACAGCGGTCTTCTAT+TGG | - | chr8_3:2912715-2912734 | None:intergenic | 45.0% | |
| ! | TTTTCAGTTCTCACGGGACA+TGG | + | chr8_3:2914095-2914114 | Msa1269740:CDS | 45.0% |
| ! | GACTCAAAGGTATGGACAAG+AGG | + | chr8_3:2914127-2914146 | Msa1269740:CDS | 45.0% |
| !! | AACTTTGAGATGCCCATGCA+TGG | - | chr8_3:2915095-2915114 | None:intergenic | 45.0% |
| ! | TTGGACTTTAGTGTTGGGCG+GGG | - | chr8_3:2911729-2911748 | None:intergenic | 50.0% |
| GTACAGAGAGATTGAAGGGG+AGG | - | chr8_3:2911937-2911956 | None:intergenic | 50.0% | |
| GATTCCGATTCCGATTGCAG+TGG | - | chr8_3:2912009-2912028 | None:intergenic | 50.0% | |
| TGGGTGAGTGTTACCATGCA+TGG | + | chr8_3:2915079-2915098 | Msa1269740:three_prime_UTR | 50.0% | |
| GGGTGAGTGTTACCATGCAT+GGG | + | chr8_3:2915080-2915099 | Msa1269740:three_prime_UTR | 50.0% | |
| TGTTGGGCGGGGCATGTATT+GGG | - | chr8_3:2911718-2911737 | None:intergenic | 55.0% | |
| ! | TTCGAAAAAGCGCACGACGG+TGG | + | chr8_3:2912051-2912070 | Msa1269740:five_prime_UTR | 55.0% |
| GTGTTGGGCGGGGCATGTAT+TGG | - | chr8_3:2911719-2911738 | None:intergenic | 60.0% | |
| ! | GAAAAAGCGCACGACGGTGG+CGG | + | chr8_3:2912054-2912073 | Msa1269740:five_prime_UTR | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 2911551 | 2915419 | 2911551 | ID=Msa1269740;Name=Msa1269740 |
| chr8_3 | mRNA | 2911551 | 2915419 | 2911551 | ID=Msa1269740-mRNA-1;Parent=Msa1269740;Name=Msa1269740-mRNA-1;_AED=0.12;_eAED=0.12;_QI=572|0.5|0.85|0.85|0|0.28|7|359|133 |
| chr8_3 | exon | 2911551 | 2912078 | 2911551 | ID=Msa1269740-mRNA-1:exon:971;Parent=Msa1269740-mRNA-1 |
| chr8_3 | exon | 2912947 | 2913001 | 2912947 | ID=Msa1269740-mRNA-1:exon:972;Parent=Msa1269740-mRNA-1 |
| chr8_3 | exon | 2913118 | 2913188 | 2913118 | ID=Msa1269740-mRNA-1:exon:973;Parent=Msa1269740-mRNA-1 |
| chr8_3 | exon | 2913265 | 2913313 | 2913265 | ID=Msa1269740-mRNA-1:exon:974;Parent=Msa1269740-mRNA-1 |
| chr8_3 | exon | 2913901 | 2913957 | 2913901 | ID=Msa1269740-mRNA-1:exon:975;Parent=Msa1269740-mRNA-1 |
| chr8_3 | exon | 2914095 | 2914148 | 2914095 | ID=Msa1269740-mRNA-1:exon:976;Parent=Msa1269740-mRNA-1 |
| chr8_3 | exon | 2914901 | 2915419 | 2914901 | ID=Msa1269740-mRNA-1:exon:977;Parent=Msa1269740-mRNA-1 |
| chr8_3 | five_prime_UTR | 2911551 | 2912078 | 2911551 | ID=Msa1269740-mRNA-1:five_prime_utr;Parent=Msa1269740-mRNA-1 |
| chr8_3 | five_prime_UTR | 2912947 | 2912990 | 2912947 | ID=Msa1269740-mRNA-1:five_prime_utr;Parent=Msa1269740-mRNA-1 |
| chr8_3 | CDS | 2912991 | 2913001 | 2912991 | ID=Msa1269740-mRNA-1:cds;Parent=Msa1269740-mRNA-1 |
| chr8_3 | CDS | 2913118 | 2913188 | 2913118 | ID=Msa1269740-mRNA-1:cds;Parent=Msa1269740-mRNA-1 |
| chr8_3 | CDS | 2913265 | 2913313 | 2913265 | ID=Msa1269740-mRNA-1:cds;Parent=Msa1269740-mRNA-1 |
| chr8_3 | CDS | 2913901 | 2913957 | 2913901 | ID=Msa1269740-mRNA-1:cds;Parent=Msa1269740-mRNA-1 |
| chr8_3 | CDS | 2914095 | 2914148 | 2914095 | ID=Msa1269740-mRNA-1:cds;Parent=Msa1269740-mRNA-1 |
| chr8_3 | CDS | 2914901 | 2915060 | 2914901 | ID=Msa1269740-mRNA-1:cds;Parent=Msa1269740-mRNA-1 |
| chr8_3 | three_prime_UTR | 2915061 | 2915419 | 2915061 | ID=Msa1269740-mRNA-1:three_prime_utr;Parent=Msa1269740-mRNA-1 |
| Gene Sequence |
| Protein sequence |
