Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006110 | Msa1129350 | 0.817406 | 3.352546e-52 | -8.615850e-47 |
| Msa0832340 | Msa1129350 | 0.801993 | 6.927260e-49 | -8.615850e-47 |
| Msa0440750 | Msa1129350 | 0.800119 | 1.673498e-48 | -8.615850e-47 |
| Msa1129350 | Msa1269740 | 0.953627 | 1.805983e-111 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 58 sgRNAs with CRISPR-Local
Find 184 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAAGCAATTCAAATTATTA+TGG | 0.202169 | 7_3:-81333975 | Msa1129340:intron |
| TTGTACAGATGTGGTGTTTA+TGG | 0.222984 | 7_3:-81334230 | Msa1129340:intron |
| AAACAACATGCAATGTAATA+TGG | 0.227403 | 7_3:+81337352 | Msa1129350:CDS |
| AATCACAATTGTAAATAATT+AGG | 0.257693 | 7_3:+81337691 | Msa1129350:three_prime_UTR |
| GCCTTGAAAATGATATTTAT+TGG | 0.266345 | 7_3:-81334005 | Msa1129340:intron |
| TTTACCATGTTTAGATGAAT+AGG | 0.292001 | 7_3:+81337475 | Msa1129350:three_prime_UTR |
| TAGGTGTTTCTACAAATTAT+TGG | 0.298561 | 7_3:+81337710 | Msa1129350:three_prime_UTR |
| GAGTTGATTCCACTGATTAC+AGG | 0.300973 | 7_3:-81337519 | Msa1129340:intron |
| CGATTTCCAGCATGAGAATA+GGG | 0.302466 | 7_3:-81334161 | Msa1129340:intron |
| TTAATGTCTGAAAATAAATT+AGG | 0.316114 | 7_3:-81334109 | Msa1129340:intron |
| TGTTGGGCGGGGCATGTATT+GGG | 0.325541 | 7_3:-81334068 | Msa1129340:intron |
| GTGTTGGGCGGGGCATGTAT+TGG | 0.333468 | 7_3:-81334069 | Msa1129340:intron |
| TGAATTTGAATTGAGTGAAT+TGG | 0.345640 | 7_3:-81334254 | Msa1129340:intron |
| CTCAAGTTTGTTCACTTTGA+GGG | 0.377609 | 7_3:-81334193 | Msa1129340:intron |
| GAATTTGAATTGAGTGAATT+GGG | 0.399083 | 7_3:-81334253 | Msa1129340:intron |
| GCTCAAGTTTGTTCACTTTG+AGG | 0.409571 | 7_3:-81334194 | Msa1129340:intron |
| TTGAAAACGTTCAATAGATT+AGG | 0.411829 | 7_3:+81336275 | Msa1129350:CDS |
| GCGATTTCCAGCATGAGAAT+AGG | 0.414894 | 7_3:-81334162 | Msa1129340:intron |
| AAATAAATTAGGTAAAGGTT+TGG | 0.428046 | 7_3:-81334098 | Msa1129340:intron |
| ATTAGAGAAATTGTTTATGA+AGG | 0.429158 | 7_3:+81335519 | Msa1129350:CDS |
| ATCGGAATCGGAATCGGAAT+CGG | 0.432857 | 7_3:+81334367 | Msa1129350:five_prime_UTR |
| GATTCCACTGCAATCGGAAT+CGG | 0.437473 | 7_3:+81334355 | Msa1129350:five_prime_UTR |
| GAGTGGTAAGCAAGATCATT+GGG | 0.444164 | 7_3:+81337252 | Msa1129350:intron |
| ACTGCAATCGGAATCGGAAT+CGG | 0.460040 | 7_3:+81334361 | Msa1129350:five_prime_UTR |
| AACAACATGCAATGTAATAT+GGG | 0.470425 | 7_3:+81337353 | Msa1129350:CDS |
| AAGGTTTGGACTTTAGTGTT+GGG | 0.474163 | 7_3:-81334084 | Msa1129340:intron |
| TCTGAAAATAAATTAGGTAA+AGG | 0.480528 | 7_3:-81334103 | Msa1129340:intron |
| TGTTTCTACAAATTATTGGC+TGG | 0.484434 | 7_3:+81337714 | Msa1129350:three_prime_UTR |
| TTCATCGATTCCACTGCAAT+CGG | 0.486542 | 7_3:+81334349 | Msa1129350:five_prime_UTR |
| AGAGTGGTAAGCAAGATCAT+TGG | 0.494223 | 7_3:+81337251 | Msa1129350:intron |
| AAAGGTTTGGACTTTAGTGT+TGG | 0.498710 | 7_3:-81334085 | Msa1129340:intron |
| TGGGTGAGTGTTACCATGCA+TGG | 0.501293 | 7_3:+81337431 | Msa1129350:three_prime_UTR |
| TTTGGACTTTAGTGTTGGGC+GGG | 0.511349 | 7_3:-81334080 | Msa1129340:intron |
| TGAAAATGATATTTATTGGA+GGG | 0.516527 | 7_3:-81334001 | Msa1129340:intron |
| GGTATGGCATTTATGCATCA+AGG | 0.528066 | 7_3:+81336252 | Msa1129350:intron |
| TGAATATAGACTCAAAGGTA+TGG | 0.529939 | 7_3:+81336471 | Msa1129350:CDS |
| TTGAAAATGATATTTATTGG+AGG | 0.534223 | 7_3:-81334002 | Msa1129340:intron |
| CAAATCTCCAATGTAAAATG+AGG | 0.535975 | 7_3:+81334045 | Msa1129350:five_prime_UTR |
| ATCTGTACAGAGAGATTGAA+GGG | 0.544306 | 7_3:-81334291 | Msa1129340:intron |
| AATCTGTACAGAGAGATTGA+AGG | 0.555137 | 7_3:-81334292 | Msa1129340:intron |
| GGGTGAGTGTTACCATGCAT+GGG | 0.562223 | 7_3:+81337432 | Msa1129350:three_prime_UTR |
| GTTTAGATGAATAGGCTGCT+AGG | 0.566332 | 7_3:+81337483 | Msa1129350:three_prime_UTR |
| ATGGTTGAATATAGACTCAA+AGG | 0.569631 | 7_3:+81336466 | Msa1129350:CDS |
| GACTCAAAGGTATGGACAAG+AGG | 0.585553 | 7_3:+81336479 | Msa1129350:CDS |
| AAACTTAGTCCTGTAATCAG+TGG | 0.589365 | 7_3:+81337510 | Msa1129350:three_prime_UTR |
| AACTTTGAGATGCCCATGCA+TGG | 0.602005 | 7_3:-81337444 | Msa1129340:intron |
| GTACAGAGAGATTGAAGGGG+AGG | 0.605456 | 7_3:-81334287 | Msa1129340:intron |
| GTTTGGACTTTAGTGTTGGG+CGG | 0.606270 | 7_3:-81334081 | Msa1129340:intron |
| GATTTCCAGCATGAGAATAG+GGG | 0.617353 | 7_3:-81334160 | Msa1129340:intron |
| TTGGACTTTAGTGTTGGGCG+GGG | 0.619820 | 7_3:-81334079 | Msa1129340:intron |
| GATTCCGATTCCGATTGCAG+TGG | 0.622227 | 7_3:-81334359 | Msa1129340:intron |
| TGGAATCGATGAATGTGAAG+AGG | 0.630958 | 7_3:-81334339 | Msa1129340:intron |
| AACATGCAATGTAATATGGG+AGG | 0.646613 | 7_3:+81337356 | Msa1129350:CDS |
| TGAATTGGGTTGTACAGATG+TGG | 0.651702 | 7_3:-81334239 | Msa1129340:intron |
| TATTCGAAATAGAGACGATG+AGG | 0.654737 | 7_3:+81335644 | Msa1129350:CDS |
| GCAGCCTATTCATCTAAACA+TGG | 0.669604 | 7_3:-81337479 | Msa1129340:intron |
| TATTTGAGATAATGACCATG+AGG | 0.675520 | 7_3:+81335332 | Msa1129350:exon |
| TCTGTACAGAGAGATTGAAG+GGG | 0.705838 | 7_3:-81334290 | Msa1129340:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTAAAAATTGGAAAAATAG+AGG | - | chr7_3:81333935-81333954 | Msa1129340:intron | 15.0% |
| !!! | AATGTTGATGATTTAAAAAT+TGG | - | chr7_3:81333946-81333965 | Msa1129340:intron | 15.0% |
| !! | TTAAGCAATTCAAATTATTA+TGG | - | chr7_3:81333978-81333997 | Msa1129340:intron | 15.0% |
| !! | TTAATGTCTGAAAATAAATT+AGG | - | chr7_3:81334112-81334131 | Msa1129340:intron | 15.0% |
| !! | AATAAATCATAGGAAAATTA+TGG | - | chr7_3:81334626-81334645 | Msa1129340:intron | 15.0% |
| !! | ATCAGAAATAAATAAATCAT+AGG | - | chr7_3:81334636-81334655 | Msa1129340:intron | 15.0% |
| !!! | TGATTGATATTTTAGATTAT+TGG | + | chr7_3:81334652-81334671 | Msa1129350:intron | 15.0% |
| !!! | GATTGATATTTTAGATTATT+GGG | + | chr7_3:81334653-81334672 | Msa1129350:intron | 15.0% |
| !!! | TATTTACTTTTATCGATTTT+CGG | + | chr7_3:81335479-81335498 | Msa1129350:CDS | 15.0% |
| !!! | TCATTTAGGTTTTTTTTAAT+TGG | + | chr7_3:81336176-81336195 | Msa1129350:intron | 15.0% |
| !!! | TTGTTCTCTATTTTATTTTA+TGG | + | chr7_3:81336506-81336525 | Msa1129350:intron | 15.0% |
| !!! | TGTTCTCTATTTTATTTTAT+GGG | + | chr7_3:81336507-81336526 | Msa1129350:intron | 15.0% |
| !! | AAAAAAACTATATGTATACA+TGG | - | chr7_3:81337031-81337050 | Msa1129340:intron | 15.0% |
| !! | AATCACAATTGTAAATAATT+AGG | + | chr7_3:81337691-81337710 | Msa1129350:three_prime_UTR | 15.0% |
| !! | TGAAAATGATATTTATTGGA+GGG | - | chr7_3:81334004-81334023 | Msa1129340:intron | 20.0% |
| !! | TTGAAAATGATATTTATTGG+AGG | - | chr7_3:81334005-81334024 | Msa1129340:intron | 20.0% |
| !!! | TCCAATAAATATCATTTTCA+AGG | + | chr7_3:81334004-81334023 | Msa1129350:five_prime_UTR | 20.0% |
| !! | AAATAAATTAGGTAAAGGTT+TGG | - | chr7_3:81334101-81334120 | Msa1129340:intron | 20.0% |
| !! | TCTGAAAATAAATTAGGTAA+AGG | - | chr7_3:81334106-81334125 | Msa1129340:intron | 20.0% |
| !! | TTAATTGCAAAAATCTGAAA+AGG | + | chr7_3:81334128-81334147 | Msa1129350:five_prime_UTR | 20.0% |
| !! | TAATTGCAAAAATCTGAAAA+GGG | + | chr7_3:81334129-81334148 | Msa1129350:five_prime_UTR | 20.0% |
| !! | TATTCTTGAGAAAAGAATAT+AGG | + | chr7_3:81334847-81334866 | Msa1129350:intron | 20.0% |
| !! | TTCTCTTTATCTTGATTATA+TGG | - | chr7_3:81335164-81335183 | Msa1129340:intron | 20.0% |
| !! | ATATAATCAAGATAAAGAGA+AGG | + | chr7_3:81335163-81335182 | Msa1129350:intron | 20.0% |
| !! | TATAATCAAGATAAAGAGAA+GGG | + | chr7_3:81335164-81335183 | Msa1129350:intron | 20.0% |
| !! | TCATAGATACATACATAATT+AGG | + | chr7_3:81335228-81335247 | Msa1129350:intron | 20.0% |
| !! | ATTAGAGAAATTGTTTATGA+AGG | + | chr7_3:81335519-81335538 | Msa1129350:CDS | 20.0% |
| !!! | ATTCTTCTTTTTCATTGTTT+TGG | + | chr7_3:81335591-81335610 | Msa1129350:intron | 20.0% |
| !! | AGAAAGAGTAAAAGAAAAAT+CGG | - | chr7_3:81335710-81335729 | Msa1129340:intron | 20.0% |
| !! | CAAATTTCAAAACATAGTAT+GGG | + | chr7_3:81335739-81335758 | Msa1129350:intron | 20.0% |
| !!! | CTAACATGATTTAAAATGAT+AGG | + | chr7_3:81335926-81335945 | Msa1129350:intron | 20.0% |
| !!! | CTTTTTTTTAAATGTACATG+CGG | + | chr7_3:81335978-81335997 | Msa1129350:intron | 20.0% |
| !!! | ATATATTTTGTCTGTTGTTT+TGG | - | chr7_3:81336069-81336088 | Msa1129340:intron | 20.0% |
| !! | ACAGACAAAATATATTTGTA+AGG | + | chr7_3:81336074-81336093 | Msa1129350:intron | 20.0% |
| !! | AAAATATATTTGTAAGGTAC+TGG | + | chr7_3:81336080-81336099 | Msa1129350:intron | 20.0% |
| !! | AGAAATTGATACAAACTTAA+CGG | - | chr7_3:81336152-81336171 | Msa1129340:intron | 20.0% |
| !!! | TGATAATGAAATATAAAGTC+AGG | - | chr7_3:81336339-81336358 | Msa1129340:intron | 20.0% |
| !!! | TTCATTATCAATTATTTTCC+TGG | + | chr7_3:81336349-81336368 | Msa1129350:intron | 20.0% |
| !!! | TCATTATCAATTATTTTCCT+GGG | + | chr7_3:81336350-81336369 | Msa1129350:intron | 20.0% |
| !! | AAATAAAGATTGTAGAAAAC+AGG | - | chr7_3:81336592-81336611 | Msa1129340:intron | 20.0% |
| !! | AGCTTACTAAAAAATGAATA+CGG | + | chr7_3:81336723-81336742 | Msa1129350:intron | 20.0% |
| !!! | TAGTGAATTATTTTGATAGT+TGG | - | chr7_3:81336755-81336774 | Msa1129340:intron | 20.0% |
| !! | ACTATCAAAATAATTCACTA+AGG | + | chr7_3:81336755-81336774 | Msa1129350:intron | 20.0% |
| !! | TTAATAGAGTATATCACATA+TGG | - | chr7_3:81336829-81336848 | Msa1129340:intron | 20.0% |
| !! | GAGATATAAGTATATATAGT+TGG | - | chr7_3:81337107-81337126 | Msa1129340:intron | 20.0% |
| !!! | TGTTATTTTTCTATGTTCAA+GGG | + | chr7_3:81337134-81337153 | Msa1129350:intron | 20.0% |
| !!! | GTTATATTTTGTTGCAAATT+TGG | + | chr7_3:81337309-81337328 | Msa1129350:CDS | 20.0% |
| ! | GCCTTGAAAATGATATTTAT+TGG | - | chr7_3:81334008-81334027 | Msa1129340:intron | 25.0% |
| ! | GAATTTGAATTGAGTGAATT+GGG | - | chr7_3:81334256-81334275 | Msa1129340:intron | 25.0% |
| ! | TGAATTTGAATTGAGTGAAT+TGG | - | chr7_3:81334257-81334276 | Msa1129340:intron | 25.0% |
| ! | CAGGAATTCAAAAACAAAAA+TGG | - | chr7_3:81334450-81334469 | Msa1129340:intron | 25.0% |
| ! | ATATAGTTTGAACATGAACA+TGG | - | chr7_3:81334475-81334494 | Msa1129340:intron | 25.0% |
| !! | TATTTGTTGCTGTTATAGTT+CGG | + | chr7_3:81334523-81334542 | Msa1129350:intron | 25.0% |
| ! | TCAATACAATTGAATCTACA+AGG | + | chr7_3:81334587-81334606 | Msa1129350:intron | 25.0% |
| !!! | TCATTATTGTGTTTTGAGTA+CGG | + | chr7_3:81334774-81334793 | Msa1129350:intron | 25.0% |
| ! | TAAGTGATCTAAATGATCAA+TGG | + | chr7_3:81334888-81334907 | Msa1129350:intron | 25.0% |
| !!! | ATGATCAATGGACTTTTTAT+TGG | + | chr7_3:81334900-81334919 | Msa1129350:intron | 25.0% |
| !! | ATACATAGCTTTACATAGAT+CGG | - | chr7_3:81334972-81334991 | Msa1129340:intron | 25.0% |
| !! | AATTCCACAGAAAATTCTTT+TGG | + | chr7_3:81334999-81335018 | Msa1129350:intron | 25.0% |
| !! | AAAACCAAAAGAATTTTCTG+TGG | - | chr7_3:81335006-81335025 | Msa1129340:intron | 25.0% |
| ! | TTATCTTGATTATATGGATG+TGG | - | chr7_3:81335158-81335177 | Msa1129340:intron | 25.0% |
| !!! | TTTCAATTGGTCTTTGTATT+TGG | + | chr7_3:81335409-81335428 | Msa1129350:intron | 25.0% |
| ! | ATATATACCAAACTGAAAGA+AGG | - | chr7_3:81335462-81335481 | Msa1129340:intron | 25.0% |
| ! | AATGTCAGCTATAAAACAAA+AGG | - | chr7_3:81335556-81335575 | Msa1129340:intron | 25.0% |
| ! | CAACAAAATAAGTCAAACAT+GGG | - | chr7_3:81335681-81335700 | Msa1129340:intron | 25.0% |
| ! | ACAACAAAATAAGTCAAACA+TGG | - | chr7_3:81335682-81335701 | Msa1129340:intron | 25.0% |
| !!! | CCATACTATGTTTTGAAATT+TGG | - | chr7_3:81335741-81335760 | Msa1129340:intron | 25.0% |
| ! | CCAAATTTCAAAACATAGTA+TGG | + | chr7_3:81335738-81335757 | Msa1129350:intron | 25.0% |
| !! | GTCAATTATGTTTTTCTCAT+TGG | - | chr7_3:81335796-81335815 | Msa1129340:intron | 25.0% |
| !!! | ACACGCTTTAAACTTTATTT+TGG | + | chr7_3:81336105-81336124 | Msa1129350:intron | 25.0% |
| ! | ATCAATTTCTACGTTCATTT+AGG | + | chr7_3:81336162-81336181 | Msa1129350:intron | 25.0% |
| ! | TTGAAAACGTTCAATAGATT+AGG | + | chr7_3:81336275-81336294 | Msa1129350:CDS | 25.0% |
| !!! | ATAGATTAGGAGCTATTTTA+AGG | + | chr7_3:81336288-81336307 | Msa1129350:CDS | 25.0% |
| ! | ATCCAAAAAAACTACCAAAA+AGG | - | chr7_3:81336387-81336406 | Msa1129340:intron | 25.0% |
| !!! | TTTGGTAGTTTTTTTGGATT+AGG | + | chr7_3:81336388-81336407 | Msa1129350:intron | 25.0% |
| !!! | TTGGTAGTTTTTTTGGATTA+GGG | + | chr7_3:81336389-81336408 | Msa1129350:intron | 25.0% |
| ! | TATAATATACAGATCCACAA+AGG | - | chr7_3:81336623-81336642 | Msa1129340:intron | 25.0% |
| ! | GCTTACTAAAAAATGAATAC+GGG | + | chr7_3:81336724-81336743 | Msa1129350:intron | 25.0% |
| !! | GTTTTTGAATTCGTTACAAA+GGG | - | chr7_3:81336915-81336934 | Msa1129340:intron | 25.0% |
| !!! | TGTTTTTGAATTCGTTACAA+AGG | - | chr7_3:81336916-81336935 | Msa1129340:intron | 25.0% |
| ! | TTGTAACGAATTCAAAAACA+CGG | + | chr7_3:81336916-81336935 | Msa1129350:intron | 25.0% |
| !! | ATTCCTGTATCGTTTTATAT+TGG | + | chr7_3:81337075-81337094 | Msa1129350:intron | 25.0% |
| !! | TTCCTGTATCGTTTTATATT+GGG | + | chr7_3:81337076-81337095 | Msa1129350:intron | 25.0% |
| !!! | GTGTTATTTTTCTATGTTCA+AGG | + | chr7_3:81337133-81337152 | Msa1129350:intron | 25.0% |
| ! | AAACAACATGCAATGTAATA+TGG | + | chr7_3:81337352-81337371 | Msa1129350:CDS | 25.0% |
| ! | AACAACATGCAATGTAATAT+GGG | + | chr7_3:81337353-81337372 | Msa1129350:CDS | 25.0% |
| !! | AGCACATTTTATGTAGATTT+TGG | + | chr7_3:81337397-81337416 | Msa1129350:exon | 25.0% |
| ! | TTTACCATGTTTAGATGAAT+AGG | + | chr7_3:81337475-81337494 | Msa1129350:three_prime_UTR | 25.0% |
| ! | CAACAATACATAAAAAGAGA+GGG | - | chr7_3:81337611-81337630 | Msa1129340:intron | 25.0% |
| ! | ACAACAATACATAAAAAGAG+AGG | - | chr7_3:81337612-81337631 | Msa1129340:intron | 25.0% |
| !! | TAGGTGTTTCTACAAATTAT+TGG | + | chr7_3:81337710-81337729 | Msa1129350:three_prime_UTR | 25.0% |
| CAAATCTCCAATGTAAAATG+AGG | + | chr7_3:81334045-81334064 | Msa1129350:five_prime_UTR | 30.0% | |
| CTATAACAGCAACAAATAGA+GGG | - | chr7_3:81334521-81334540 | Msa1129340:intron | 30.0% | |
| ACTATAACAGCAACAAATAG+AGG | - | chr7_3:81334522-81334541 | Msa1129340:intron | 30.0% | |
| GGAAAATTATGGAGTATATG+TGG | - | chr7_3:81334615-81334634 | Msa1129340:intron | 30.0% | |
| ACTAAATCAGCAAAATAGCA+AGG | - | chr7_3:81334806-81334825 | Msa1129340:intron | 30.0% | |
| ! | TTTTCTTTCACACTCTATGT+CGG | + | chr7_3:81335025-81335044 | Msa1129350:intron | 30.0% |
| AAACACAAAAATCTGAACAG+CGG | - | chr7_3:81335078-81335097 | Msa1129340:intron | 30.0% | |
| ! | GCACTCATATTTCAATGTTT+TGG | + | chr7_3:81335273-81335292 | Msa1129350:intron | 30.0% |
| ! | TATTTGAGATAATGACCATG+AGG | + | chr7_3:81335332-81335351 | Msa1129350:exon | 30.0% |
| TAAGAAATGAAGTTACCTCA+TGG | - | chr7_3:81335350-81335369 | Msa1129340:intron | 30.0% | |
| TGATTCTCCTTTCTTTCAAT+TGG | + | chr7_3:81335396-81335415 | Msa1129350:intron | 30.0% | |
| ACAAAGACCAATTGAAAGAA+AGG | - | chr7_3:81335406-81335425 | Msa1129340:intron | 30.0% | |
| ATTTGTACCTTCTTTCAGTT+TGG | + | chr7_3:81335452-81335471 | Msa1129350:intron | 30.0% | |
| AAGAAGAATCAGAACACAAA+TGG | - | chr7_3:81335580-81335599 | Msa1129340:intron | 30.0% | |
| GGAGATATGTAGTATGATTA+GGG | + | chr7_3:81335760-81335779 | Msa1129350:intron | 30.0% | |
| CACTCTAAATCATGTGAAAT+TGG | + | chr7_3:81336011-81336030 | Msa1129350:intron | 30.0% | |
| ACGGTACAAAAAAATAGACA+TGG | - | chr7_3:81336133-81336152 | Msa1129340:intron | 30.0% | |
| ! | GTTGATGAGTTTGATGATAT+AGG | + | chr7_3:81336231-81336250 | Msa1129350:intron | 30.0% |
| ! | TGAGTTTGATGATATAGGTA+TGG | + | chr7_3:81336236-81336255 | Msa1129350:intron | 30.0% |
| AAAAGGACATAAAAATTCCC+AGG | - | chr7_3:81336370-81336389 | Msa1129340:intron | 30.0% | |
| ! | GGGAATTTTTATGTCCTTTT+TGG | + | chr7_3:81336370-81336389 | Msa1129350:intron | 30.0% |
| !! | GTCCTTTTTGGTAGTTTTTT+TGG | + | chr7_3:81336382-81336401 | Msa1129350:intron | 30.0% |
| ATGGTTGAATATAGACTCAA+AGG | + | chr7_3:81336466-81336485 | Msa1129350:CDS | 30.0% | |
| TGAATATAGACTCAAAGGTA+TGG | + | chr7_3:81336471-81336490 | Msa1129350:CDS | 30.0% | |
| TGTAACGAATTCAAAAACAC+GGG | + | chr7_3:81336917-81336936 | Msa1129350:intron | 30.0% | |
| TACCCAATATAAAACGATAC+AGG | - | chr7_3:81337081-81337100 | Msa1129340:intron | 30.0% | |
| !! | GCAAATTTGGCTGTTTTATT+TGG | + | chr7_3:81337322-81337341 | Msa1129350:CDS | 30.0% |
| ! | TGTTTCTACAAATTATTGGC+TGG | + | chr7_3:81337714-81337733 | Msa1129350:three_prime_UTR | 30.0% |
| ! | TATTGGGCCTCATTTTACAT+TGG | - | chr7_3:81334055-81334074 | Msa1129340:intron | 35.0% |
| AAGGTTTGGACTTTAGTGTT+GGG | - | chr7_3:81334087-81334106 | Msa1129340:intron | 35.0% | |
| AAAGGTTTGGACTTTAGTGT+TGG | - | chr7_3:81334088-81334107 | Msa1129340:intron | 35.0% | |
| ! | CTCAAGTTTGTTCACTTTGA+GGG | - | chr7_3:81334196-81334215 | Msa1129340:intron | 35.0% |
| TTGTACAGATGTGGTGTTTA+TGG | - | chr7_3:81334233-81334252 | Msa1129340:intron | 35.0% | |
| ATCTGTACAGAGAGATTGAA+GGG | - | chr7_3:81334294-81334313 | Msa1129340:intron | 35.0% | |
| AATCTGTACAGAGAGATTGA+AGG | - | chr7_3:81334295-81334314 | Msa1129340:intron | 35.0% | |
| TTTGAACATGAACATGGATC+AGG | - | chr7_3:81334469-81334488 | Msa1129340:intron | 35.0% | |
| !!! | TTTTGGCAGATTTTGAAGCA+TGG | + | chr7_3:81335608-81335627 | Msa1129350:intron | 35.0% |
| TATTCGAAATAGAGACGATG+AGG | + | chr7_3:81335644-81335663 | Msa1129350:CDS | 35.0% | |
| GGGAGATATGTAGTATGATT+AGG | + | chr7_3:81335759-81335778 | Msa1129350:intron | 35.0% | |
| ! | TAAGCAGTTTTCAGTTCTCA+CGG | + | chr7_3:81336440-81336459 | Msa1129350:intron | 35.0% |
| ! | TTATTTTCCCGTTTCCTTTG+TGG | + | chr7_3:81336606-81336625 | Msa1129350:intron | 35.0% |
| ATACAGATCCACAAAGGAAA+CGG | - | chr7_3:81336617-81336636 | Msa1129340:intron | 35.0% | |
| ATATCACATATGGAAGAGTG+TGG | - | chr7_3:81336819-81336838 | Msa1129340:intron | 35.0% | |
| AGGCGACATGATATAGTATA+TGG | + | chr7_3:81336940-81336959 | Msa1129350:intron | 35.0% | |
| !!! | ATGTTCTGTTTTTTGCAGAG+TGG | + | chr7_3:81337235-81337254 | Msa1129350:intron | 35.0% |
| AACATGCAATGTAATATGGG+AGG | + | chr7_3:81337356-81337375 | Msa1129350:CDS | 35.0% | |
| AAACTTAGTCCTGTAATCAG+TGG | + | chr7_3:81337510-81337529 | Msa1129350:three_prime_UTR | 35.0% | |
| GATTTCCAGCATGAGAATAG+GGG | - | chr7_3:81334163-81334182 | Msa1129340:intron | 40.0% | |
| CGATTTCCAGCATGAGAATA+GGG | - | chr7_3:81334164-81334183 | Msa1129340:intron | 40.0% | |
| ! | GCTCAAGTTTGTTCACTTTG+AGG | - | chr7_3:81334197-81334216 | Msa1129340:intron | 40.0% |
| ! | TGAATTGGGTTGTACAGATG+TGG | - | chr7_3:81334242-81334261 | Msa1129340:intron | 40.0% |
| TCTGTACAGAGAGATTGAAG+GGG | - | chr7_3:81334293-81334312 | Msa1129340:intron | 40.0% | |
| TGGAATCGATGAATGTGAAG+AGG | - | chr7_3:81334342-81334361 | Msa1129340:intron | 40.0% | |
| !! | TTCATCGATTCCACTGCAAT+CGG | + | chr7_3:81334349-81334368 | Msa1129350:five_prime_UTR | 40.0% |
| !! | ATTTTCGAAAAAGCGCACGA+CGG | + | chr7_3:81334401-81334420 | Msa1129350:five_prime_UTR | 40.0% |
| ATGAAGACAGAGTTCGAACT+TGG | - | chr7_3:81334566-81334585 | Msa1129340:intron | 40.0% | |
| ! | TTTCACACTCTATGTCGGTT+TGG | + | chr7_3:81335030-81335049 | Msa1129350:intron | 40.0% |
| CCTTCAATCAAGCAACATGT+AGG | - | chr7_3:81335121-81335140 | Msa1129340:intron | 40.0% | |
| ! | CCTACATGTTGCTTGATTGA+AGG | + | chr7_3:81335118-81335137 | Msa1129350:intron | 40.0% |
| ATTAACAGCTTAAGCGTTCG+TGG | - | chr7_3:81335863-81335882 | Msa1129340:intron | 40.0% | |
| ! | TTTTGGCATACAGTGTGTGT+TGG | - | chr7_3:81336052-81336071 | Msa1129340:intron | 40.0% |
| GGTATGGCATTTATGCATCA+AGG | + | chr7_3:81336252-81336271 | Msa1129350:intron | 40.0% | |
| ! | AAGCAGTTTTCAGTTCTCAC+GGG | + | chr7_3:81336441-81336460 | Msa1129350:intron | 40.0% |
| TACAGATCCACAAAGGAAAC+GGG | - | chr7_3:81336616-81336635 | Msa1129340:intron | 40.0% | |
| AACGAATTCAAAAACACGGG+AGG | + | chr7_3:81336920-81336939 | Msa1129350:intron | 40.0% | |
| AGAGTGGTAAGCAAGATCAT+TGG | + | chr7_3:81337251-81337270 | Msa1129350:intron | 40.0% | |
| GAGTGGTAAGCAAGATCATT+GGG | + | chr7_3:81337252-81337271 | Msa1129350:intron | 40.0% | |
| !!! | AGATTTTGGCTGTCATTGCT+TGG | + | chr7_3:81337411-81337430 | Msa1129350:exon | 40.0% |
| !!! | GATTTTGGCTGTCATTGCTT+GGG | + | chr7_3:81337412-81337431 | Msa1129350:exon | 40.0% |
| GCAGCCTATTCATCTAAACA+TGG | - | chr7_3:81337482-81337501 | Msa1129340:intron | 40.0% | |
| GTTTAGATGAATAGGCTGCT+AGG | + | chr7_3:81337483-81337502 | Msa1129350:three_prime_UTR | 40.0% | |
| ! | GAGTTGATTCCACTGATTAC+AGG | - | chr7_3:81337522-81337541 | Msa1129340:intron | 40.0% |
| ! | TTTGGACTTTAGTGTTGGGC+GGG | - | chr7_3:81334083-81334102 | Msa1129340:intron | 45.0% |
| ! | GTTTGGACTTTAGTGTTGGG+CGG | - | chr7_3:81334084-81334103 | Msa1129340:intron | 45.0% |
| ! | CTTTTCCCCTATTCTCATGC+TGG | + | chr7_3:81334155-81334174 | Msa1129350:five_prime_UTR | 45.0% |
| GCGATTTCCAGCATGAGAAT+AGG | - | chr7_3:81334165-81334184 | Msa1129340:intron | 45.0% | |
| GATTCCACTGCAATCGGAAT+CGG | + | chr7_3:81334355-81334374 | Msa1129350:five_prime_UTR | 45.0% | |
| ACTGCAATCGGAATCGGAAT+CGG | + | chr7_3:81334361-81334380 | Msa1129350:five_prime_UTR | 45.0% | |
| ATCGGAATCGGAATCGGAAT+CGG | + | chr7_3:81334367-81334386 | Msa1129350:five_prime_UTR | 45.0% | |
| TCTGAACAGCGGTCTTCTAT+TGG | - | chr7_3:81335067-81335086 | Msa1129340:intron | 45.0% | |
| ! | TTTTCAGTTCTCACGGGACA+TGG | + | chr7_3:81336447-81336466 | Msa1129350:CDS | 45.0% |
| ! | GACTCAAAGGTATGGACAAG+AGG | + | chr7_3:81336479-81336498 | Msa1129350:CDS | 45.0% |
| !! | AACTTTGAGATGCCCATGCA+TGG | - | chr7_3:81337447-81337466 | Msa1129340:intron | 45.0% |
| !!! | AAATGTTTTTTTTTTTTTTT+AGG | - | chr7_3:81334727-81334746 | Msa1129340:intron | 5.0% |
| ! | TTGGACTTTAGTGTTGGGCG+GGG | - | chr7_3:81334082-81334101 | Msa1129340:intron | 50.0% |
| GTACAGAGAGATTGAAGGGG+AGG | - | chr7_3:81334290-81334309 | Msa1129340:intron | 50.0% | |
| GATTCCGATTCCGATTGCAG+TGG | - | chr7_3:81334362-81334381 | Msa1129340:intron | 50.0% | |
| TGGGTGAGTGTTACCATGCA+TGG | + | chr7_3:81337431-81337450 | Msa1129350:three_prime_UTR | 50.0% | |
| GGGTGAGTGTTACCATGCAT+GGG | + | chr7_3:81337432-81337451 | Msa1129350:three_prime_UTR | 50.0% | |
| TGTTGGGCGGGGCATGTATT+GGG | - | chr7_3:81334071-81334090 | Msa1129340:intron | 55.0% | |
| ! | TTCGAAAAAGCGCACGACGG+TGG | + | chr7_3:81334404-81334423 | Msa1129350:five_prime_UTR | 55.0% |
| GTGTTGGGCGGGGCATGTAT+TGG | - | chr7_3:81334072-81334091 | Msa1129340:intron | 60.0% | |
| ! | GAAAAAGCGCACGACGGTGG+CGG | + | chr7_3:81334407-81334426 | Msa1129350:five_prime_UTR | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 81333904 | 81337771 | 81333904 | ID=Msa1129350;Name=Msa1129350 |
| chr7_3 | mRNA | 81333904 | 81337771 | 81333904 | ID=Msa1129350-mRNA-1;Parent=Msa1129350;Name=Msa1129350-mRNA-1;_AED=0.12;_eAED=0.12;_QI=572|0.5|0.85|0.85|0|0.28|7|359|133 |
| chr7_3 | exon | 81333904 | 81334431 | 81333904 | ID=Msa1129350-mRNA-1:exon:23582;Parent=Msa1129350-mRNA-1 |
| chr7_3 | exon | 81335299 | 81335353 | 81335299 | ID=Msa1129350-mRNA-1:exon:23583;Parent=Msa1129350-mRNA-1 |
| chr7_3 | exon | 81335470 | 81335540 | 81335470 | ID=Msa1129350-mRNA-1:exon:23584;Parent=Msa1129350-mRNA-1 |
| chr7_3 | exon | 81335617 | 81335665 | 81335617 | ID=Msa1129350-mRNA-1:exon:23585;Parent=Msa1129350-mRNA-1 |
| chr7_3 | exon | 81336253 | 81336309 | 81336253 | ID=Msa1129350-mRNA-1:exon:23586;Parent=Msa1129350-mRNA-1 |
| chr7_3 | exon | 81336447 | 81336500 | 81336447 | ID=Msa1129350-mRNA-1:exon:23587;Parent=Msa1129350-mRNA-1 |
| chr7_3 | exon | 81337253 | 81337771 | 81337253 | ID=Msa1129350-mRNA-1:exon:23588;Parent=Msa1129350-mRNA-1 |
| chr7_3 | five_prime_UTR | 81333904 | 81334431 | 81333904 | ID=Msa1129350-mRNA-1:five_prime_utr;Parent=Msa1129350-mRNA-1 |
| chr7_3 | five_prime_UTR | 81335299 | 81335342 | 81335299 | ID=Msa1129350-mRNA-1:five_prime_utr;Parent=Msa1129350-mRNA-1 |
| chr7_3 | CDS | 81335343 | 81335353 | 81335343 | ID=Msa1129350-mRNA-1:cds;Parent=Msa1129350-mRNA-1 |
| chr7_3 | CDS | 81335470 | 81335540 | 81335470 | ID=Msa1129350-mRNA-1:cds;Parent=Msa1129350-mRNA-1 |
| chr7_3 | CDS | 81335617 | 81335665 | 81335617 | ID=Msa1129350-mRNA-1:cds;Parent=Msa1129350-mRNA-1 |
| chr7_3 | CDS | 81336253 | 81336309 | 81336253 | ID=Msa1129350-mRNA-1:cds;Parent=Msa1129350-mRNA-1 |
| chr7_3 | CDS | 81336447 | 81336500 | 81336447 | ID=Msa1129350-mRNA-1:cds;Parent=Msa1129350-mRNA-1 |
| chr7_3 | CDS | 81337253 | 81337412 | 81337253 | ID=Msa1129350-mRNA-1:cds;Parent=Msa1129350-mRNA-1 |
| chr7_3 | three_prime_UTR | 81337413 | 81337771 | 81337413 | ID=Msa1129350-mRNA-1:three_prime_utr;Parent=Msa1129350-mRNA-1 |
| Gene Sequence |
| Protein sequence |
