Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1271020 | XP_003626689.2 | 94.602 | 352 | 18 | 1 | 1 | 352 | 1 | 351 | 0.0 | 619 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1271020 | sp|Q8GWW6|4MMP_ARATH | 50.432 | 347 | 153 | 6 | 6 | 350 | 10 | 339 | 3.02e-118 | 348 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1271020 | G7LBJ3 | 94.602 | 352 | 18 | 1 | 1 | 352 | 1 | 351 | 0.0 | 619 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1227990 | Msa1271020 | 0.842199 | 2.992250e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1271020 | MtrunA17_Chr8g0334661 | 94.602 | 352 | 18 | 1 | 1 | 352 | 1 | 351 | 0.0 | 619 |
| Msa1271020 | MtrunA17_Chr5g0399301 | 58.306 | 307 | 115 | 3 | 29 | 332 | 40 | 336 | 5.84e-125 | 363 |
| Msa1271020 | MtrunA17_Chr5g0414891 | 46.580 | 307 | 151 | 5 | 39 | 337 | 54 | 355 | 5.46e-94 | 285 |
| Msa1271020 | MtrunA17_Chr8g0364281 | 46.897 | 290 | 135 | 5 | 38 | 313 | 84 | 368 | 1.67e-80 | 251 |
| Msa1271020 | MtrunA17_Chr6g0451671 | 38.462 | 299 | 146 | 7 | 37 | 307 | 41 | 329 | 6.35e-60 | 196 |
| Msa1271020 | MtrunA17_Chr5g0414641 | 35.915 | 284 | 161 | 6 | 31 | 310 | 55 | 321 | 1.50e-49 | 169 |
| Msa1271020 | MtrunA17_Chr5g0414657 | 32.628 | 331 | 182 | 12 | 7 | 312 | 7 | 321 | 7.30e-37 | 136 |
| Msa1271020 | MtrunA17_Chr5g0414654 | 34.545 | 275 | 139 | 10 | 45 | 312 | 38 | 278 | 1.66e-36 | 134 |
| Msa1271020 | MtrunA17_Chr5g0414661 | 32.226 | 301 | 170 | 9 | 53 | 343 | 35 | 311 | 1.75e-34 | 129 |
| Msa1271020 | MtrunA17_Chr5g0414771 | 33.692 | 279 | 150 | 11 | 49 | 312 | 3 | 261 | 5.67e-34 | 127 |
| Msa1271020 | MtrunA17_Chr5g0414821 | 32.584 | 267 | 146 | 8 | 51 | 309 | 114 | 354 | 1.30e-33 | 128 |
| Msa1271020 | MtrunA17_Chr5g0414791 | 31.818 | 264 | 154 | 8 | 51 | 309 | 89 | 331 | 1.50e-31 | 122 |
| Msa1271020 | MtrunA17_Chr5g0414831 | 35.156 | 128 | 78 | 3 | 175 | 297 | 4 | 131 | 2.68e-15 | 72.0 |
| Msa1271020 | MtrunA17_Chr5g0414801 | 35.965 | 114 | 71 | 2 | 3 | 115 | 26 | 138 | 8.04e-13 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1271020 | AT2G45040.1 | 50.432 | 347 | 153 | 6 | 6 | 350 | 10 | 339 | 3.07e-119 | 348 |
| Msa1271020 | AT4G16640.1 | 55.986 | 284 | 114 | 4 | 33 | 314 | 51 | 325 | 1.37e-109 | 325 |
| Msa1271020 | AT1G70170.1 | 45.675 | 289 | 138 | 5 | 39 | 313 | 46 | 329 | 1.22e-85 | 264 |
| Msa1271020 | AT1G59970.1 | 46.442 | 267 | 131 | 5 | 46 | 307 | 54 | 313 | 2.05e-80 | 250 |
| Msa1271020 | AT1G24140.1 | 43.131 | 313 | 151 | 8 | 39 | 330 | 48 | 354 | 3.92e-79 | 247 |
Find 66 sgRNAs with CRISPR-Local
Find 164 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAGGTGTACAATCTCTTTA+TGG | 0.178172 | 8_3:-4383948 | Msa1271020:CDS |
| GACCACTGAGATCTAAAATT+TGG | 0.186371 | 8_3:+4383918 | None:intergenic |
| TTGAATATTGATGATATTAA+AGG | 0.231900 | 8_3:-4383966 | Msa1271020:CDS |
| AAAGATACCTATCTCGTTTC+GGG | 0.242215 | 8_3:-4384682 | Msa1271020:CDS |
| AGTTTGGAGTTGACACTTTC+GGG | 0.242633 | 8_3:-4383857 | Msa1271020:CDS |
| GAGAAATGTGAAGGAGTATC+TGG | 0.292363 | 8_3:+4384835 | None:intergenic |
| ATGGTTTGTGATGGATATTT+TGG | 0.295126 | 8_3:+4384766 | None:intergenic |
| CAGTAATGTATCCAAGTTTA+AGG | 0.295494 | 8_3:-4384010 | Msa1271020:CDS |
| CTTGAAGTCCAAGATTTCTT+TGG | 0.299528 | 8_3:+4384591 | None:intergenic |
| ACAAATCATGGTGCAAAGTT+TGG | 0.322005 | 8_3:-4383873 | Msa1271020:CDS |
| ATACAGGGAAATTGCAATAA+TGG | 0.322978 | 8_3:+4383818 | None:intergenic |
| GAGCCATTTGATGGAGTTCT+TGG | 0.328970 | 8_3:-4384206 | Msa1271020:CDS |
| AAGTTTGGAGTTGACACTTT+CGG | 0.334864 | 8_3:-4383858 | Msa1271020:CDS |
| ACCTCGATGCAGCCGAGACT+TGG | 0.336587 | 8_3:-4384142 | Msa1271020:CDS |
| GAGACTTGGGCGGTTGATTT+CGG | 0.337997 | 8_3:-4384128 | Msa1271020:CDS |
| ATCAAATACCAAAGAAATCT+TGG | 0.341782 | 8_3:-4384599 | Msa1271020:CDS |
| AAAAGATACCTATCTCGTTT+CGG | 0.355227 | 8_3:-4384683 | Msa1271020:CDS |
| ACATGAGATTGGACATTTGT+TGG | 0.375194 | 8_3:-4384060 | Msa1271020:CDS |
| AAAGGTTCAAATTATAATAC+AGG | 0.381220 | 8_3:+4383802 | None:intergenic |
| TAGATCTCAGTGGTCTTCAT+TGG | 0.382448 | 8_3:-4383910 | Msa1271020:CDS |
| AATCTTGGACTTCAAGTAAC+TGG | 0.389374 | 8_3:-4384584 | Msa1271020:CDS |
| CATGAGATTGGACATTTGTT+GGG | 0.392912 | 8_3:-4384059 | Msa1271020:CDS |
| TCAAACGAGCATTCTCTAGA+TGG | 0.397604 | 8_3:-4384322 | Msa1271020:CDS |
| AAACTTTGCACCATGATTTG+TGG | 0.402827 | 8_3:+4383875 | None:intergenic |
| ACTTTCGGGTTCTCTATGAT+TGG | 0.405044 | 8_3:-4383843 | Msa1271020:CDS |
| TAATGTACCCGAAACGAGAT+AGG | 0.407063 | 8_3:+4384675 | None:intergenic |
| AAGCCATAGGTTAGTGTCAT+TGG | 0.410592 | 8_3:+4384398 | None:intergenic |
| TCTGATTCGACAAAACTTAA+CGG | 0.416920 | 8_3:+4384287 | None:intergenic |
| TTATCTCTTGGCCTTAAACT+TGG | 0.420331 | 8_3:+4383999 | None:intergenic |
| CATTCGTTCTCACCGGAGAT+AGG | 0.424201 | 8_3:-4384173 | Msa1271020:CDS |
| GTCACATAGTTCTTTGAAAG+AGG | 0.449261 | 8_3:-4384033 | Msa1271020:CDS |
| TGAAGGAGTATCTGGGTGAT+AGG | 0.455918 | 8_3:+4384843 | None:intergenic |
| TGATTTCGGTGTAACGAAAT+CGG | 0.459611 | 8_3:-4384114 | Msa1271020:CDS |
| GGTGATGGTGAGCCATTTGA+TGG | 0.470162 | 8_3:-4384215 | Msa1271020:CDS |
| TTTGTCGAATCAGAGGATTA+TGG | 0.472195 | 8_3:-4384278 | Msa1271020:CDS |
| TCTGATATCTCCACAAATCA+TGG | 0.490593 | 8_3:-4383885 | Msa1271020:CDS |
| ATTCATAGCTTCACCAATGC+TGG | 0.494960 | 8_3:-4384740 | Msa1271020:CDS |
| TCAGTAGCAACACATGAGAT+TGG | 0.504027 | 8_3:-4384071 | Msa1271020:CDS |
| AGCTTCACCAATGCTGGCAG+AGG | 0.514014 | 8_3:-4384734 | Msa1271020:CDS |
| ACACCAAGAACTCCATCAAA+TGG | 0.514511 | 8_3:+4384203 | None:intergenic |
| CGGTGTAACGAAATCGGAGG+TGG | 0.518632 | 8_3:-4384108 | Msa1271020:CDS |
| GTTGTTGCCTCTGCCAGCAT+TGG | 0.520249 | 8_3:+4384727 | None:intergenic |
| CTATCTCCGGTGAGAACGAA+TGG | 0.521976 | 8_3:+4384174 | None:intergenic |
| ATCAGAGGATTATGGTTTCG+CGG | 0.530317 | 8_3:-4384270 | Msa1271020:CDS |
| ACTTGAGCATACAAGAGATA+AGG | 0.535220 | 8_3:-4384352 | Msa1271020:CDS |
| AGAAATGTGAAGGAGTATCT+GGG | 0.543003 | 8_3:+4384836 | None:intergenic |
| GAAATCAACCGCCCAAGTCT+CGG | 0.544382 | 8_3:+4384130 | None:intergenic |
| GATCATTTGAGAAACTGTAT+TGG | 0.546404 | 8_3:+4384550 | None:intergenic |
| GTGTCTGGGACACCACATCT+TGG | 0.546997 | 8_3:+4384524 | None:intergenic |
| AGGTGAAGTCTTCCTATCTC+CGG | 0.553302 | 8_3:+4384161 | None:intergenic |
| ATGCCAATGACACTAACCTA+TGG | 0.555029 | 8_3:-4384401 | Msa1271020:CDS |
| TATCTCCGGTGAGAACGAAT+GGG | 0.562042 | 8_3:+4384175 | None:intergenic |
| AGTAGTGAAGAGAAATGTGA+AGG | 0.574185 | 8_3:+4384826 | None:intergenic |
| GGCAGAGGCAACAACATCAC+AGG | 0.587313 | 8_3:-4384719 | Msa1271020:CDS |
| GTTAGCCCATTCGTTCTCAC+CGG | 0.599027 | 8_3:-4384180 | Msa1271020:CDS |
| TATAGTGGTGACCATGGTGA+TGG | 0.605121 | 8_3:-4384230 | Msa1271020:CDS |
| ATGAATGTCATGGTTTGTGA+TGG | 0.608360 | 8_3:+4384757 | None:intergenic |
| GTAGTCACTTGAGAAGCCAT+AGG | 0.626586 | 8_3:+4384385 | None:intergenic |
| CAAATGATCACACCAAGATG+TGG | 0.640519 | 8_3:-4384536 | Msa1271020:CDS |
| TGGTGAAGCTATGAATGTCA+TGG | 0.644473 | 8_3:+4384747 | None:intergenic |
| AAGGTTCAAATTATAATACA+GGG | 0.646428 | 8_3:+4383803 | None:intergenic |
| CGATGCAGCCGAGACTTGGG+CGG | 0.658498 | 8_3:-4384138 | Msa1271020:CDS |
| TTTCGGTGTAACGAAATCGG+AGG | 0.702180 | 8_3:-4384111 | Msa1271020:CDS |
| CAAATGGCTCACCATCACCA+TGG | 0.702776 | 8_3:+4384219 | None:intergenic |
| GTGAAGATGATGATAATGTG+AGG | 0.703519 | 8_3:+4384798 | None:intergenic |
| GGCATGTCACGTGACCAACG+TGG | 0.753244 | 8_3:+4384419 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAAAAATAGGATTTTATAG+TGG | - | chr8_3:4384400-4384419 | Msa1271020:CDS | 15.0% |
| !!! | TTGAATATTGATGATATTAA+AGG | - | chr8_3:4384679-4384698 | Msa1271020:CDS | 15.0% |
| !!! | ATAAAAATAGGATTTTATAG+TGG | - | chr8_3:4384400-4384419 | Msa1271020:CDS | 15.0% |
| !!! | TTGAATATTGATGATATTAA+AGG | - | chr8_3:4384679-4384698 | Msa1271020:CDS | 15.0% |
| !!! | TGTTATGAATATGATTTTGA+TGG | + | chr8_3:4384177-4384196 | None:intergenic | 20.0% |
| !! | AAGGTTCAAATTATAATACA+GGG | + | chr8_3:4384845-4384864 | None:intergenic | 20.0% |
| !! | AAAGGTTCAAATTATAATAC+AGG | + | chr8_3:4384846-4384865 | None:intergenic | 20.0% |
| !!! | TGTTATGAATATGATTTTGA+TGG | + | chr8_3:4384177-4384196 | None:intergenic | 20.0% |
| !! | AAGGTTCAAATTATAATACA+GGG | + | chr8_3:4384845-4384864 | None:intergenic | 20.0% |
| !! | AAAGGTTCAAATTATAATAC+AGG | + | chr8_3:4384846-4384865 | None:intergenic | 20.0% |
| ! | ATCAAATACCAAAGAAATCT+TGG | - | chr8_3:4384046-4384065 | Msa1271020:CDS | 25.0% |
| !!! | ACGAATTTTGTTTATTTTCC+TGG | - | chr8_3:4384199-4384218 | Msa1271020:CDS | 25.0% |
| ! | ATCAAATACCAAAGAAATCT+TGG | - | chr8_3:4384046-4384065 | Msa1271020:CDS | 25.0% |
| !!! | ACGAATTTTGTTTATTTTCC+TGG | - | chr8_3:4384199-4384218 | Msa1271020:CDS | 25.0% |
| !!! | ATGGTTTGTGATGGATATTT+TGG | + | chr8_3:4383882-4383901 | None:intergenic | 30.0% |
| AAAAGATACCTATCTCGTTT+CGG | - | chr8_3:4383962-4383981 | Msa1271020:CDS | 30.0% | |
| GATCATTTGAGAAACTGTAT+TGG | + | chr8_3:4384098-4384117 | None:intergenic | 30.0% | |
| ! | TCTGATTCGACAAAACTTAA+CGG | + | chr8_3:4384361-4384380 | None:intergenic | 30.0% |
| CAGTAATGTATCCAAGTTTA+AGG | - | chr8_3:4384635-4384654 | Msa1271020:CDS | 30.0% | |
| ! | AAATCAGCTCTTTTATCTCT+TGG | + | chr8_3:4384661-4384680 | None:intergenic | 30.0% |
| ! | AAAGGTGTACAATCTCTTTA+TGG | - | chr8_3:4384697-4384716 | Msa1271020:CDS | 30.0% |
| ! | ATCCAAATTTTAGATCTCAG+TGG | - | chr8_3:4384725-4384744 | Msa1271020:CDS | 30.0% |
| ATACAGGGAAATTGCAATAA+TGG | + | chr8_3:4384830-4384849 | None:intergenic | 30.0% | |
| !!! | ATGGTTTGTGATGGATATTT+TGG | + | chr8_3:4383882-4383901 | None:intergenic | 30.0% |
| AAAAGATACCTATCTCGTTT+CGG | - | chr8_3:4383962-4383981 | Msa1271020:CDS | 30.0% | |
| GATCATTTGAGAAACTGTAT+TGG | + | chr8_3:4384098-4384117 | None:intergenic | 30.0% | |
| ! | TCTGATTCGACAAAACTTAA+CGG | + | chr8_3:4384361-4384380 | None:intergenic | 30.0% |
| CAGTAATGTATCCAAGTTTA+AGG | - | chr8_3:4384635-4384654 | Msa1271020:CDS | 30.0% | |
| ! | AAATCAGCTCTTTTATCTCT+TGG | + | chr8_3:4384661-4384680 | None:intergenic | 30.0% |
| ! | AAAGGTGTACAATCTCTTTA+TGG | - | chr8_3:4384697-4384716 | Msa1271020:CDS | 30.0% |
| ! | ATCCAAATTTTAGATCTCAG+TGG | - | chr8_3:4384725-4384744 | Msa1271020:CDS | 30.0% |
| ATACAGGGAAATTGCAATAA+TGG | + | chr8_3:4384830-4384849 | None:intergenic | 30.0% | |
| !! | AGAAATGTGAAGGAGTATCT+GGG | + | chr8_3:4383812-4383831 | None:intergenic | 35.0% |
| AGTAGTGAAGAGAAATGTGA+AGG | + | chr8_3:4383822-4383841 | None:intergenic | 35.0% | |
| ! | GTGAAGATGATGATAATGTG+AGG | + | chr8_3:4383850-4383869 | None:intergenic | 35.0% |
| !!! | GTTTGTGATGGATATTTTGG+TGG | + | chr8_3:4383879-4383898 | None:intergenic | 35.0% |
| ! | ATGAATGTCATGGTTTGTGA+TGG | + | chr8_3:4383891-4383910 | None:intergenic | 35.0% |
| AAAGATACCTATCTCGTTTC+GGG | - | chr8_3:4383963-4383982 | Msa1271020:CDS | 35.0% | |
| CTTGAAGTCCAAGATTTCTT+TGG | + | chr8_3:4384057-4384076 | None:intergenic | 35.0% | |
| AATCTTGGACTTCAAGTAAC+TGG | - | chr8_3:4384061-4384080 | Msa1271020:CDS | 35.0% | |
| !! | GATGAGTTTTTGTTGTGTCT+GGG | + | chr8_3:4384138-4384157 | None:intergenic | 35.0% |
| !! | TGATGAGTTTTTGTTGTGTC+TGG | + | chr8_3:4384139-4384158 | None:intergenic | 35.0% |
| ACTTGAGCATACAAGAGATA+AGG | - | chr8_3:4384293-4384312 | Msa1271020:CDS | 35.0% | |
| !! | GTTAAGTTTTGTCGAATCAG+AGG | - | chr8_3:4384360-4384379 | Msa1271020:CDS | 35.0% |
| TTTGTCGAATCAGAGGATTA+TGG | - | chr8_3:4384367-4384386 | Msa1271020:CDS | 35.0% | |
| GGTTTCGCGGATATAAAAAT+AGG | - | chr8_3:4384388-4384407 | Msa1271020:CDS | 35.0% | |
| ! | TGATTTCGGTGTAACGAAAT+CGG | - | chr8_3:4384531-4384550 | Msa1271020:CDS | 35.0% |
| ACATGAGATTGGACATTTGT+TGG | - | chr8_3:4384585-4384604 | Msa1271020:CDS | 35.0% | |
| CATGAGATTGGACATTTGTT+GGG | - | chr8_3:4384586-4384605 | Msa1271020:CDS | 35.0% | |
| ! | GTCACATAGTTCTTTGAAAG+AGG | - | chr8_3:4384612-4384631 | Msa1271020:CDS | 35.0% |
| !! | TTATCTCTTGGCCTTAAACT+TGG | + | chr8_3:4384649-4384668 | None:intergenic | 35.0% |
| ! | GACCACTGAGATCTAAAATT+TGG | + | chr8_3:4384730-4384749 | None:intergenic | 35.0% |
| TCTGATATCTCCACAAATCA+TGG | - | chr8_3:4384760-4384779 | Msa1271020:CDS | 35.0% | |
| AAACTTTGCACCATGATTTG+TGG | + | chr8_3:4384773-4384792 | None:intergenic | 35.0% | |
| ACAAATCATGGTGCAAAGTT+TGG | - | chr8_3:4384772-4384791 | Msa1271020:CDS | 35.0% | |
| ! | AAGTTTGGAGTTGACACTTT+CGG | - | chr8_3:4384787-4384806 | Msa1271020:CDS | 35.0% |
| !! | AGAAATGTGAAGGAGTATCT+GGG | + | chr8_3:4383812-4383831 | None:intergenic | 35.0% |
| AGTAGTGAAGAGAAATGTGA+AGG | + | chr8_3:4383822-4383841 | None:intergenic | 35.0% | |
| ! | GTGAAGATGATGATAATGTG+AGG | + | chr8_3:4383850-4383869 | None:intergenic | 35.0% |
| !!! | GTTTGTGATGGATATTTTGG+TGG | + | chr8_3:4383879-4383898 | None:intergenic | 35.0% |
| ! | ATGAATGTCATGGTTTGTGA+TGG | + | chr8_3:4383891-4383910 | None:intergenic | 35.0% |
| AAAGATACCTATCTCGTTTC+GGG | - | chr8_3:4383963-4383982 | Msa1271020:CDS | 35.0% | |
| CTTGAAGTCCAAGATTTCTT+TGG | + | chr8_3:4384057-4384076 | None:intergenic | 35.0% | |
| AATCTTGGACTTCAAGTAAC+TGG | - | chr8_3:4384061-4384080 | Msa1271020:CDS | 35.0% | |
| !! | GATGAGTTTTTGTTGTGTCT+GGG | + | chr8_3:4384138-4384157 | None:intergenic | 35.0% |
| !! | TGATGAGTTTTTGTTGTGTC+TGG | + | chr8_3:4384139-4384158 | None:intergenic | 35.0% |
| ACTTGAGCATACAAGAGATA+AGG | - | chr8_3:4384293-4384312 | Msa1271020:CDS | 35.0% | |
| !! | GTTAAGTTTTGTCGAATCAG+AGG | - | chr8_3:4384360-4384379 | Msa1271020:CDS | 35.0% |
| TTTGTCGAATCAGAGGATTA+TGG | - | chr8_3:4384367-4384386 | Msa1271020:CDS | 35.0% | |
| GGTTTCGCGGATATAAAAAT+AGG | - | chr8_3:4384388-4384407 | Msa1271020:CDS | 35.0% | |
| ! | TGATTTCGGTGTAACGAAAT+CGG | - | chr8_3:4384531-4384550 | Msa1271020:CDS | 35.0% |
| ACATGAGATTGGACATTTGT+TGG | - | chr8_3:4384585-4384604 | Msa1271020:CDS | 35.0% | |
| CATGAGATTGGACATTTGTT+GGG | - | chr8_3:4384586-4384605 | Msa1271020:CDS | 35.0% | |
| ! | GTCACATAGTTCTTTGAAAG+AGG | - | chr8_3:4384612-4384631 | Msa1271020:CDS | 35.0% |
| !! | TTATCTCTTGGCCTTAAACT+TGG | + | chr8_3:4384649-4384668 | None:intergenic | 35.0% |
| ! | GACCACTGAGATCTAAAATT+TGG | + | chr8_3:4384730-4384749 | None:intergenic | 35.0% |
| TCTGATATCTCCACAAATCA+TGG | - | chr8_3:4384760-4384779 | Msa1271020:CDS | 35.0% | |
| AAACTTTGCACCATGATTTG+TGG | + | chr8_3:4384773-4384792 | None:intergenic | 35.0% | |
| ACAAATCATGGTGCAAAGTT+TGG | - | chr8_3:4384772-4384791 | Msa1271020:CDS | 35.0% | |
| ! | AAGTTTGGAGTTGACACTTT+CGG | - | chr8_3:4384787-4384806 | Msa1271020:CDS | 35.0% |
| !! | GAGAAATGTGAAGGAGTATC+TGG | + | chr8_3:4383813-4383832 | None:intergenic | 40.0% |
| !!! | ATGGATATTTTGGTGGCTAG+TGG | + | chr8_3:4383872-4383891 | None:intergenic | 40.0% |
| TGGTGAAGCTATGAATGTCA+TGG | + | chr8_3:4383901-4383920 | None:intergenic | 40.0% | |
| ATTCATAGCTTCACCAATGC+TGG | - | chr8_3:4383905-4383924 | Msa1271020:CDS | 40.0% | |
| TAATGTACCCGAAACGAGAT+AGG | + | chr8_3:4383973-4383992 | None:intergenic | 40.0% | |
| CAAATGATCACACCAAGATG+TGG | - | chr8_3:4384109-4384128 | Msa1271020:CDS | 40.0% | |
| ! | ATTTTCCTGGAAAACCACGT+TGG | - | chr8_3:4384212-4384231 | Msa1271020:CDS | 40.0% |
| ATGCCAATGACACTAACCTA+TGG | - | chr8_3:4384244-4384263 | Msa1271020:CDS | 40.0% | |
| AAGCCATAGGTTAGTGTCAT+TGG | + | chr8_3:4384250-4384269 | None:intergenic | 40.0% | |
| TCAAACGAGCATTCTCTAGA+TGG | - | chr8_3:4384323-4384342 | Msa1271020:CDS | 40.0% | |
| ATCAGAGGATTATGGTTTCG+CGG | - | chr8_3:4384375-4384394 | Msa1271020:CDS | 40.0% | |
| ! | GGATTTTATAGTGGTGACCA+TGG | - | chr8_3:4384409-4384428 | Msa1271020:CDS | 40.0% |
| ACACCAAGAACTCCATCAAA+TGG | + | chr8_3:4384445-4384464 | None:intergenic | 40.0% | |
| TCAGTAGCAACACATGAGAT+TGG | - | chr8_3:4384574-4384593 | Msa1271020:CDS | 40.0% | |
| TAGATCTCAGTGGTCTTCAT+TGG | - | chr8_3:4384735-4384754 | Msa1271020:CDS | 40.0% | |
| ! | AGTTTGGAGTTGACACTTTC+GGG | - | chr8_3:4384788-4384807 | Msa1271020:CDS | 40.0% |
| !! | ACTTTCGGGTTCTCTATGAT+TGG | - | chr8_3:4384802-4384821 | Msa1271020:CDS | 40.0% |
| !! | GAGAAATGTGAAGGAGTATC+TGG | + | chr8_3:4383813-4383832 | None:intergenic | 40.0% |
| !!! | ATGGATATTTTGGTGGCTAG+TGG | + | chr8_3:4383872-4383891 | None:intergenic | 40.0% |
| TGGTGAAGCTATGAATGTCA+TGG | + | chr8_3:4383901-4383920 | None:intergenic | 40.0% | |
| ATTCATAGCTTCACCAATGC+TGG | - | chr8_3:4383905-4383924 | Msa1271020:CDS | 40.0% | |
| TAATGTACCCGAAACGAGAT+AGG | + | chr8_3:4383973-4383992 | None:intergenic | 40.0% | |
| CAAATGATCACACCAAGATG+TGG | - | chr8_3:4384109-4384128 | Msa1271020:CDS | 40.0% | |
| ! | ATTTTCCTGGAAAACCACGT+TGG | - | chr8_3:4384212-4384231 | Msa1271020:CDS | 40.0% |
| ATGCCAATGACACTAACCTA+TGG | - | chr8_3:4384244-4384263 | Msa1271020:CDS | 40.0% | |
| AAGCCATAGGTTAGTGTCAT+TGG | + | chr8_3:4384250-4384269 | None:intergenic | 40.0% | |
| TCAAACGAGCATTCTCTAGA+TGG | - | chr8_3:4384323-4384342 | Msa1271020:CDS | 40.0% | |
| ATCAGAGGATTATGGTTTCG+CGG | - | chr8_3:4384375-4384394 | Msa1271020:CDS | 40.0% | |
| ! | GGATTTTATAGTGGTGACCA+TGG | - | chr8_3:4384409-4384428 | Msa1271020:CDS | 40.0% |
| ACACCAAGAACTCCATCAAA+TGG | + | chr8_3:4384445-4384464 | None:intergenic | 40.0% | |
| TCAGTAGCAACACATGAGAT+TGG | - | chr8_3:4384574-4384593 | Msa1271020:CDS | 40.0% | |
| TAGATCTCAGTGGTCTTCAT+TGG | - | chr8_3:4384735-4384754 | Msa1271020:CDS | 40.0% | |
| ! | AGTTTGGAGTTGACACTTTC+GGG | - | chr8_3:4384788-4384807 | Msa1271020:CDS | 40.0% |
| !! | ACTTTCGGGTTCTCTATGAT+TGG | - | chr8_3:4384802-4384821 | Msa1271020:CDS | 40.0% |
| !! | TGAAGGAGTATCTGGGTGAT+AGG | + | chr8_3:4383805-4383824 | None:intergenic | 45.0% |
| GTAGTCACTTGAGAAGCCAT+AGG | + | chr8_3:4384263-4384282 | None:intergenic | 45.0% | |
| TATAGTGGTGACCATGGTGA+TGG | - | chr8_3:4384415-4384434 | Msa1271020:CDS | 45.0% | |
| GAGCCATTTGATGGAGTTCT+TGG | - | chr8_3:4384439-4384458 | Msa1271020:CDS | 45.0% | |
| TATCTCCGGTGAGAACGAAT+GGG | + | chr8_3:4384473-4384492 | None:intergenic | 45.0% | |
| AGGTGAAGTCTTCCTATCTC+CGG | + | chr8_3:4384487-4384506 | None:intergenic | 45.0% | |
| ! | TTTCGGTGTAACGAAATCGG+AGG | - | chr8_3:4384534-4384553 | Msa1271020:CDS | 45.0% |
| !! | TGAAGGAGTATCTGGGTGAT+AGG | + | chr8_3:4383805-4383824 | None:intergenic | 45.0% |
| GTAGTCACTTGAGAAGCCAT+AGG | + | chr8_3:4384263-4384282 | None:intergenic | 45.0% | |
| TATAGTGGTGACCATGGTGA+TGG | - | chr8_3:4384415-4384434 | Msa1271020:CDS | 45.0% | |
| GAGCCATTTGATGGAGTTCT+TGG | - | chr8_3:4384439-4384458 | Msa1271020:CDS | 45.0% | |
| TATCTCCGGTGAGAACGAAT+GGG | + | chr8_3:4384473-4384492 | None:intergenic | 45.0% | |
| AGGTGAAGTCTTCCTATCTC+CGG | + | chr8_3:4384487-4384506 | None:intergenic | 45.0% | |
| ! | TTTCGGTGTAACGAAATCGG+AGG | - | chr8_3:4384534-4384553 | Msa1271020:CDS | 45.0% |
| CAAATGGCTCACCATCACCA+TGG | + | chr8_3:4384429-4384448 | None:intergenic | 50.0% | |
| ! | GGTGATGGTGAGCCATTTGA+TGG | - | chr8_3:4384430-4384449 | Msa1271020:CDS | 50.0% |
| GTTAGCCCATTCGTTCTCAC+CGG | - | chr8_3:4384465-4384484 | Msa1271020:CDS | 50.0% | |
| CTATCTCCGGTGAGAACGAA+TGG | + | chr8_3:4384474-4384493 | None:intergenic | 50.0% | |
| CATTCGTTCTCACCGGAGAT+AGG | - | chr8_3:4384472-4384491 | Msa1271020:CDS | 50.0% | |
| GAAATCAACCGCCCAAGTCT+CGG | + | chr8_3:4384518-4384537 | None:intergenic | 50.0% | |
| ! | GAGACTTGGGCGGTTGATTT+CGG | - | chr8_3:4384517-4384536 | Msa1271020:CDS | 50.0% |
| CAAATGGCTCACCATCACCA+TGG | + | chr8_3:4384429-4384448 | None:intergenic | 50.0% | |
| ! | GGTGATGGTGAGCCATTTGA+TGG | - | chr8_3:4384430-4384449 | Msa1271020:CDS | 50.0% |
| GTTAGCCCATTCGTTCTCAC+CGG | - | chr8_3:4384465-4384484 | Msa1271020:CDS | 50.0% | |
| CTATCTCCGGTGAGAACGAA+TGG | + | chr8_3:4384474-4384493 | None:intergenic | 50.0% | |
| CATTCGTTCTCACCGGAGAT+AGG | - | chr8_3:4384472-4384491 | Msa1271020:CDS | 50.0% | |
| GAAATCAACCGCCCAAGTCT+CGG | + | chr8_3:4384518-4384537 | None:intergenic | 50.0% | |
| ! | GAGACTTGGGCGGTTGATTT+CGG | - | chr8_3:4384517-4384536 | Msa1271020:CDS | 50.0% |
| AGCTTCACCAATGCTGGCAG+AGG | - | chr8_3:4383911-4383930 | Msa1271020:CDS | 55.0% | |
| GTTGTTGCCTCTGCCAGCAT+TGG | + | chr8_3:4383921-4383940 | None:intergenic | 55.0% | |
| GGCAGAGGCAACAACATCAC+AGG | - | chr8_3:4383926-4383945 | Msa1271020:CDS | 55.0% | |
| ! | GTGTCTGGGACACCACATCT+TGG | + | chr8_3:4384124-4384143 | None:intergenic | 55.0% |
| ! | CGTGACCAACGTGGTTTTCC+AGG | + | chr8_3:4384220-4384239 | None:intergenic | 55.0% |
| CGGTGTAACGAAATCGGAGG+TGG | - | chr8_3:4384537-4384556 | Msa1271020:CDS | 55.0% | |
| AGCTTCACCAATGCTGGCAG+AGG | - | chr8_3:4383911-4383930 | Msa1271020:CDS | 55.0% | |
| GTTGTTGCCTCTGCCAGCAT+TGG | + | chr8_3:4383921-4383940 | None:intergenic | 55.0% | |
| GGCAGAGGCAACAACATCAC+AGG | - | chr8_3:4383926-4383945 | Msa1271020:CDS | 55.0% | |
| ! | GTGTCTGGGACACCACATCT+TGG | + | chr8_3:4384124-4384143 | None:intergenic | 55.0% |
| ! | CGTGACCAACGTGGTTTTCC+AGG | + | chr8_3:4384220-4384239 | None:intergenic | 55.0% |
| CGGTGTAACGAAATCGGAGG+TGG | - | chr8_3:4384537-4384556 | Msa1271020:CDS | 55.0% | |
| GGCATGTCACGTGACCAACG+TGG | + | chr8_3:4384229-4384248 | None:intergenic | 60.0% | |
| ACCTCGATGCAGCCGAGACT+TGG | - | chr8_3:4384503-4384522 | Msa1271020:CDS | 60.0% | |
| CCTCGATGCAGCCGAGACTT+GGG | - | chr8_3:4384504-4384523 | Msa1271020:CDS | 60.0% | |
| GGCATGTCACGTGACCAACG+TGG | + | chr8_3:4384229-4384248 | None:intergenic | 60.0% | |
| ACCTCGATGCAGCCGAGACT+TGG | - | chr8_3:4384503-4384522 | Msa1271020:CDS | 60.0% | |
| CCTCGATGCAGCCGAGACTT+GGG | - | chr8_3:4384504-4384523 | Msa1271020:CDS | 60.0% | |
| CCCAAGTCTCGGCTGCATCG+AGG | + | chr8_3:4384507-4384526 | None:intergenic | 65.0% | |
| CGATGCAGCCGAGACTTGGG+CGG | - | chr8_3:4384507-4384526 | Msa1271020:CDS | 65.0% | |
| CCCAAGTCTCGGCTGCATCG+AGG | + | chr8_3:4384507-4384526 | None:intergenic | 65.0% | |
| CGATGCAGCCGAGACTTGGG+CGG | - | chr8_3:4384507-4384526 | Msa1271020:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 4383797 | 4384870 | 4383797 | ID=Msa1271020;Name=Msa1271020 |
| chr8_3 | mRNA | 4383797 | 4384870 | 4383797 | ID=Msa1271020-mRNA-1;Parent=Msa1271020;Name=Msa1271020-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|-1|0|1|-1|1|1|0|357 |
| chr8_3 | exon | 4383797 | 4384870 | 4383797 | ID=Msa1271020-mRNA-1:exon:1475;Parent=Msa1271020-mRNA-1 |
| chr8_3 | CDS | 4383797 | 4384870 | 4383797 | ID=Msa1271020-mRNA-1:cds;Parent=Msa1271020-mRNA-1 |
| Gene Sequence |
| Protein sequence |
