Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1227990 | XP_003626689.2 | 94.318 | 352 | 19 | 1 | 1 | 352 | 1 | 351 | 0.0 | 617 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1227990 | sp|Q8GWW6|4MMP_ARATH | 50.144 | 347 | 154 | 6 | 6 | 350 | 10 | 339 | 2.24e-117 | 346 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1227990 | G7LBJ3 | 94.318 | 352 | 19 | 1 | 1 | 352 | 1 | 351 | 0.0 | 617 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0081520 | Msa1227990 | 0.804847 | 1.775038e-49 | -8.615850e-47 |
| Msa0108160 | Msa1227990 | 0.817606 | 3.022779e-52 | -8.615850e-47 |
| Msa0626450 | Msa1227990 | 0.824771 | 6.738206e-54 | -8.615850e-47 |
| Msa0626490 | Msa1227990 | 0.824065 | 9.874050e-54 | -8.615850e-47 |
| Msa0664600 | Msa1227990 | 0.825778 | 3.893586e-54 | -8.615850e-47 |
| Msa0683570 | Msa1227990 | 0.802224 | 6.209826e-49 | -8.615850e-47 |
| Msa0727640 | Msa1227990 | 0.808762 | 2.640742e-50 | -8.615850e-47 |
| Msa0768990 | Msa1227990 | 0.813512 | 2.465261e-51 | -8.615850e-47 |
| Msa0823820 | Msa1227990 | 0.812360 | 4.409849e-51 | -8.615850e-47 |
| Msa0174450 | Msa1227990 | 0.800057 | 1.722991e-48 | -8.615850e-47 |
| Msa0199960 | Msa1227990 | 0.819948 | 8.883216e-53 | -8.615850e-47 |
| Msa1227990 | Msa1271020 | 0.842199 | 2.992250e-58 | -8.615850e-47 |
| Msa1227990 | Msa1327650 | 0.811340 | 7.352094e-51 | -8.615850e-47 |
| Msa1227990 | Msa1340700 | 0.802476 | 5.509489e-49 | -8.615850e-47 |
| Msa1227990 | Msa1436420 | 0.810459 | 1.140933e-50 | -8.615850e-47 |
| Msa1227990 | Msa1440960 | 0.815935 | 7.164521e-52 | -8.615850e-47 |
| Msa0392380 | Msa1227990 | 0.837342 | 5.502180e-57 | -8.615850e-47 |
| Msa0440320 | Msa1227990 | 0.820823 | 5.594737e-53 | -8.615850e-47 |
| Msa1063500 | Msa1227990 | 0.805138 | 1.542902e-49 | -8.615850e-47 |
| Msa0243600 | Msa1227990 | 0.833840 | 4.233056e-56 | -8.615850e-47 |
| Msa0282220 | Msa1227990 | 0.826252 | 3.003820e-54 | -8.615850e-47 |
| Msa1125940 | Msa1227990 | 0.811199 | 7.890965e-51 | -8.615850e-47 |
| Msa0487500 | Msa1227990 | 0.820446 | 6.829602e-53 | -8.615850e-47 |
| Msa0863010 | Msa1227990 | 0.806203 | 9.220246e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1227990 | MtrunA17_Chr8g0334661 | 94.318 | 352 | 19 | 1 | 1 | 352 | 1 | 351 | 0.0 | 617 |
| Msa1227990 | MtrunA17_Chr5g0399301 | 58.306 | 307 | 115 | 3 | 29 | 332 | 40 | 336 | 3.23e-124 | 361 |
| Msa1227990 | MtrunA17_Chr5g0414891 | 46.254 | 307 | 152 | 5 | 39 | 337 | 54 | 355 | 1.88e-93 | 283 |
| Msa1227990 | MtrunA17_Chr8g0364281 | 45.862 | 290 | 138 | 5 | 38 | 313 | 84 | 368 | 1.10e-78 | 247 |
| Msa1227990 | MtrunA17_Chr6g0451671 | 38.127 | 299 | 147 | 7 | 37 | 307 | 41 | 329 | 4.55e-59 | 194 |
| Msa1227990 | MtrunA17_Chr5g0414641 | 35.211 | 284 | 163 | 6 | 31 | 310 | 55 | 321 | 2.13e-48 | 166 |
| Msa1227990 | MtrunA17_Chr5g0414657 | 32.831 | 332 | 180 | 13 | 7 | 312 | 7 | 321 | 3.67e-36 | 134 |
| Msa1227990 | MtrunA17_Chr5g0414654 | 33.818 | 275 | 141 | 10 | 45 | 312 | 38 | 278 | 3.42e-35 | 130 |
| Msa1227990 | MtrunA17_Chr5g0414661 | 32.226 | 301 | 170 | 9 | 53 | 343 | 35 | 311 | 6.02e-34 | 127 |
| Msa1227990 | MtrunA17_Chr5g0414821 | 31.835 | 267 | 148 | 8 | 51 | 309 | 114 | 354 | 1.11e-32 | 125 |
| Msa1227990 | MtrunA17_Chr5g0414771 | 32.857 | 280 | 153 | 11 | 48 | 312 | 2 | 261 | 1.17e-32 | 123 |
| Msa1227990 | MtrunA17_Chr5g0414791 | 31.061 | 264 | 156 | 8 | 51 | 309 | 89 | 331 | 2.55e-30 | 119 |
| Msa1227990 | MtrunA17_Chr5g0414831 | 34.375 | 128 | 79 | 3 | 175 | 297 | 4 | 131 | 9.27e-15 | 70.5 |
| Msa1227990 | MtrunA17_Chr5g0414801 | 35.965 | 114 | 71 | 2 | 3 | 115 | 26 | 138 | 8.36e-13 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1227990 | AT2G45040.1 | 50.144 | 347 | 154 | 6 | 6 | 350 | 10 | 339 | 2.28e-118 | 346 |
| Msa1227990 | AT4G16640.1 | 55.634 | 284 | 115 | 4 | 33 | 314 | 51 | 325 | 8.18e-109 | 323 |
| Msa1227990 | AT1G70170.1 | 45.329 | 289 | 139 | 5 | 39 | 313 | 46 | 329 | 9.96e-85 | 261 |
| Msa1227990 | AT1G59970.1 | 45.693 | 267 | 133 | 5 | 46 | 307 | 54 | 313 | 7.31e-79 | 246 |
| Msa1227990 | AT1G24140.1 | 42.173 | 313 | 154 | 7 | 39 | 330 | 48 | 354 | 2.45e-78 | 245 |
Find 68 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAGGTGTACAATCTCTTTA+TGG | 0.178172 | 8_2:+3469753 | Msa1227990:CDS |
| GACCACTGAGATCTAAAATT+TGG | 0.186371 | 8_2:-3469783 | None:intergenic |
| TTGAATATTGATGATATTAA+AGG | 0.231900 | 8_2:+3469735 | Msa1227990:CDS |
| AAAGATACCTATCTCGTTTC+GGG | 0.242215 | 8_2:+3469019 | Msa1227990:CDS |
| AGTTTGGAGTTGACACTTTC+GGG | 0.242633 | 8_2:+3469844 | Msa1227990:CDS |
| GAGAAATGTGAAGGAGTATC+TGG | 0.292363 | 8_2:-3468866 | None:intergenic |
| ATGGTTTGTGATGGATATTT+TGG | 0.295126 | 8_2:-3468935 | None:intergenic |
| CTTGAAGTCCAAGATTTCTT+TGG | 0.299528 | 8_2:-3469110 | None:intergenic |
| ACAAATCATGGTGCAAAGTT+TGG | 0.322005 | 8_2:+3469828 | Msa1227990:CDS |
| ATACAGGGAAATTGCAATAA+TGG | 0.322978 | 8_2:-3469883 | None:intergenic |
| GAGCCATTTGATGGAGTTCT+TGG | 0.328970 | 8_2:+3469495 | Msa1227990:CDS |
| AAGTTTGGAGTTGACACTTT+CGG | 0.334864 | 8_2:+3469843 | Msa1227990:CDS |
| ACCTCGATGCAGCCGAGACT+TGG | 0.336587 | 8_2:+3469559 | Msa1227990:CDS |
| GAGACTTGGGCGGTTGATTT+CGG | 0.337997 | 8_2:+3469573 | Msa1227990:CDS |
| ATCAAATACCAAAGAAATCT+TGG | 0.341782 | 8_2:+3469102 | Msa1227990:CDS |
| TAGATGGAGTTCAGTTATTC+CGG | 0.350190 | 8_2:+3469395 | Msa1227990:CDS |
| AAATCAGCTCTTTCATCTCT+TGG | 0.350454 | 8_2:-3469714 | None:intergenic |
| AAAAGATACCTATCTCGTTT+CGG | 0.355227 | 8_2:+3469018 | Msa1227990:CDS |
| ACATGAGATTGGACATTTGT+TGG | 0.375194 | 8_2:+3469641 | Msa1227990:CDS |
| AAATGTTCAAATTATAATAC+AGG | 0.380865 | 8_2:-3469899 | None:intergenic |
| TAGATCTCAGTGGTCTTCAT+TGG | 0.382448 | 8_2:+3469791 | Msa1227990:CDS |
| AATCTTGGACTTCAAGTAAC+TGG | 0.389374 | 8_2:+3469117 | Msa1227990:CDS |
| CATGAGATTGGACATTTGTT+GGG | 0.392912 | 8_2:+3469642 | Msa1227990:CDS |
| TCAAACGAGCATTCTCTAGA+TGG | 0.397604 | 8_2:+3469379 | Msa1227990:CDS |
| CATTCGTTCTCACCGGAGAT+TGG | 0.398480 | 8_2:+3469528 | Msa1227990:CDS |
| AAACTTTGCACCATGATTTG+TGG | 0.402827 | 8_2:-3469826 | None:intergenic |
| ACTTTCGGGTTCTCTATGAT+TGG | 0.405044 | 8_2:+3469858 | Msa1227990:CDS |
| TAATGTACCCGAAACGAGAT+AGG | 0.407063 | 8_2:-3469026 | None:intergenic |
| AAGCCATAGGTTAGTGTCAT+TGG | 0.410592 | 8_2:-3469303 | None:intergenic |
| TCATCTCTTGGCCTCAAACT+TGG | 0.422627 | 8_2:-3469702 | None:intergenic |
| GTCACATAGTTCTTTGAAAG+AGG | 0.449261 | 8_2:+3469668 | Msa1227990:CDS |
| TGAAGGAGTATCTGGGTGAT+AGG | 0.455918 | 8_2:-3468858 | None:intergenic |
| TGATTTCGGTGTAACGAAAT+CGG | 0.459611 | 8_2:+3469587 | Msa1227990:CDS |
| GGTGATGGTGAGCCATTTGA+TGG | 0.470162 | 8_2:+3469486 | Msa1227990:CDS |
| TTTGTCGAATCAGAGGATTA+TGG | 0.472195 | 8_2:+3469423 | Msa1227990:CDS |
| TCTGATTCGACAAAACTAAC+CGG | 0.479344 | 8_2:-3469414 | None:intergenic |
| ATCAGAGGATTATGGTTTCA+CGG | 0.480189 | 8_2:+3469431 | Msa1227990:CDS |
| CAATCTCCGGTGAGAACGAA+TGG | 0.483401 | 8_2:-3469527 | None:intergenic |
| TCTGATATCTCCACAAATCA+TGG | 0.490593 | 8_2:+3469816 | Msa1227990:CDS |
| ATTCATAGCTTCACCAATGC+TGG | 0.494960 | 8_2:+3468961 | Msa1227990:CDS |
| TCAGTAGCAACACATGAGAT+TGG | 0.504027 | 8_2:+3469630 | Msa1227990:CDS |
| AGCTTCACCAATGCTGGCAG+AGG | 0.514014 | 8_2:+3468967 | Msa1227990:CDS |
| ACACCAAGAACTCCATCAAA+TGG | 0.514511 | 8_2:-3469498 | None:intergenic |
| CGGTGTAACGAAATCGGAGG+TGG | 0.518632 | 8_2:+3469593 | Msa1227990:CDS |
| GTTGTTGCCTCTGCCAGCAT+TGG | 0.520249 | 8_2:-3468974 | None:intergenic |
| ACTTGAGCATACAAGAGATA+AGG | 0.535220 | 8_2:+3469349 | Msa1227990:CDS |
| AGAAATGTGAAGGAGTATCT+GGG | 0.543003 | 8_2:-3468865 | None:intergenic |
| GAAATCAACCGCCCAAGTCT+CGG | 0.544382 | 8_2:-3469571 | None:intergenic |
| GATCATTTGAGAAACTGTAT+TGG | 0.546404 | 8_2:-3469151 | None:intergenic |
| GTGTCTGGGACACCACATCT+TGG | 0.546997 | 8_2:-3469177 | None:intergenic |
| AGGTGAAGTCTTCCAATCTC+CGG | 0.552756 | 8_2:-3469540 | None:intergenic |
| CAGTAATGTATCCAAGTTTG+AGG | 0.553005 | 8_2:+3469691 | Msa1227990:CDS |
| ATGCCAATGACACTAACCTA+TGG | 0.555029 | 8_2:+3469300 | Msa1227990:CDS |
| AGTAGTGAAGAGAAATGTGA+AGG | 0.574185 | 8_2:-3468875 | None:intergenic |
| AATCTCCGGTGAGAACGAAT+GGG | 0.576616 | 8_2:-3469526 | None:intergenic |
| GGCAGAGGCAACAACATCAC+AGG | 0.587313 | 8_2:+3468982 | Msa1227990:CDS |
| GTTAGCCCATTCGTTCTCAC+CGG | 0.599027 | 8_2:+3469521 | Msa1227990:CDS |
| TATAGTGGTGACCATGGTGA+TGG | 0.605121 | 8_2:+3469471 | Msa1227990:CDS |
| ATGAATGTCATGGTTTGTGA+TGG | 0.608360 | 8_2:-3468944 | None:intergenic |
| GTAGTCACTTGAGAAGCCAT+AGG | 0.626586 | 8_2:-3469316 | None:intergenic |
| CAAATGATCACACCAAGATG+TGG | 0.640519 | 8_2:+3469165 | Msa1227990:CDS |
| TGGTGAAGCTATGAATGTCA+TGG | 0.644473 | 8_2:-3468954 | None:intergenic |
| AATGTTCAAATTATAATACA+GGG | 0.646103 | 8_2:-3469898 | None:intergenic |
| CGATGCAGCCGAGACTTGGG+CGG | 0.658498 | 8_2:+3469563 | Msa1227990:CDS |
| TTTCGGTGTAACGAAATCGG+AGG | 0.702180 | 8_2:+3469590 | Msa1227990:CDS |
| CAAATGGCTCACCATCACCA+TGG | 0.702776 | 8_2:-3469482 | None:intergenic |
| GTGAAGATGATGATAATGTG+AGG | 0.703519 | 8_2:-3468903 | None:intergenic |
| GGCATGTCACGTGACCAACG+TGG | 0.753244 | 8_2:-3469282 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAAAAATAGGATTTTATAG+TGG | + | chr8_2:3469456-3469475 | Msa1227990:CDS | 15.0% |
| !!! | TTGAATATTGATGATATTAA+AGG | + | chr8_2:3469735-3469754 | Msa1227990:CDS | 15.0% |
| !! | AATGTTCAAATTATAATACA+GGG | - | chr8_2:3469901-3469920 | None:intergenic | 15.0% |
| !! | AAATGTTCAAATTATAATAC+AGG | - | chr8_2:3469902-3469921 | None:intergenic | 15.0% |
| !!! | ATAAAAATAGGATTTTATAG+TGG | + | chr8_2:3469456-3469475 | Msa1227990:CDS | 15.0% |
| !!! | TTGAATATTGATGATATTAA+AGG | + | chr8_2:3469735-3469754 | Msa1227990:CDS | 15.0% |
| !! | AATGTTCAAATTATAATACA+GGG | - | chr8_2:3469901-3469920 | None:intergenic | 15.0% |
| !! | AAATGTTCAAATTATAATAC+AGG | - | chr8_2:3469902-3469921 | None:intergenic | 15.0% |
| !!! | TGTTATGAATATGATTTTGA+TGG | - | chr8_2:3469233-3469252 | None:intergenic | 20.0% |
| !!! | TGTTATGAATATGATTTTGA+TGG | - | chr8_2:3469233-3469252 | None:intergenic | 20.0% |
| ! | ATCAAATACCAAAGAAATCT+TGG | + | chr8_2:3469102-3469121 | Msa1227990:CDS | 25.0% |
| !!! | ACGAATTTTGTTTATTTTCC+TGG | + | chr8_2:3469255-3469274 | Msa1227990:CDS | 25.0% |
| ! | ATCAAATACCAAAGAAATCT+TGG | + | chr8_2:3469102-3469121 | Msa1227990:CDS | 25.0% |
| !!! | ACGAATTTTGTTTATTTTCC+TGG | + | chr8_2:3469255-3469274 | Msa1227990:CDS | 25.0% |
| !!! | ATGGTTTGTGATGGATATTT+TGG | - | chr8_2:3468938-3468957 | None:intergenic | 30.0% |
| AAAAGATACCTATCTCGTTT+CGG | + | chr8_2:3469018-3469037 | Msa1227990:CDS | 30.0% | |
| GATCATTTGAGAAACTGTAT+TGG | - | chr8_2:3469154-3469173 | None:intergenic | 30.0% | |
| GGTTTCACGGATATAAAAAT+AGG | + | chr8_2:3469444-3469463 | Msa1227990:CDS | 30.0% | |
| ! | AAAGGTGTACAATCTCTTTA+TGG | + | chr8_2:3469753-3469772 | Msa1227990:CDS | 30.0% |
| ! | ATCCAAATTTTAGATCTCAG+TGG | + | chr8_2:3469781-3469800 | Msa1227990:CDS | 30.0% |
| ATACAGGGAAATTGCAATAA+TGG | - | chr8_2:3469886-3469905 | None:intergenic | 30.0% | |
| !!! | ATGGTTTGTGATGGATATTT+TGG | - | chr8_2:3468938-3468957 | None:intergenic | 30.0% |
| AAAAGATACCTATCTCGTTT+CGG | + | chr8_2:3469018-3469037 | Msa1227990:CDS | 30.0% | |
| GATCATTTGAGAAACTGTAT+TGG | - | chr8_2:3469154-3469173 | None:intergenic | 30.0% | |
| GGTTTCACGGATATAAAAAT+AGG | + | chr8_2:3469444-3469463 | Msa1227990:CDS | 30.0% | |
| ! | AAAGGTGTACAATCTCTTTA+TGG | + | chr8_2:3469753-3469772 | Msa1227990:CDS | 30.0% |
| ! | ATCCAAATTTTAGATCTCAG+TGG | + | chr8_2:3469781-3469800 | Msa1227990:CDS | 30.0% |
| ATACAGGGAAATTGCAATAA+TGG | - | chr8_2:3469886-3469905 | None:intergenic | 30.0% | |
| !! | AGAAATGTGAAGGAGTATCT+GGG | - | chr8_2:3468868-3468887 | None:intergenic | 35.0% |
| AGTAGTGAAGAGAAATGTGA+AGG | - | chr8_2:3468878-3468897 | None:intergenic | 35.0% | |
| ! | GTGAAGATGATGATAATGTG+AGG | - | chr8_2:3468906-3468925 | None:intergenic | 35.0% |
| !!! | GTTTGTGATGGATATTTTGG+TGG | - | chr8_2:3468935-3468954 | None:intergenic | 35.0% |
| ! | ATGAATGTCATGGTTTGTGA+TGG | - | chr8_2:3468947-3468966 | None:intergenic | 35.0% |
| AAAGATACCTATCTCGTTTC+GGG | + | chr8_2:3469019-3469038 | Msa1227990:CDS | 35.0% | |
| CTTGAAGTCCAAGATTTCTT+TGG | - | chr8_2:3469113-3469132 | None:intergenic | 35.0% | |
| AATCTTGGACTTCAAGTAAC+TGG | + | chr8_2:3469117-3469136 | Msa1227990:CDS | 35.0% | |
| !! | GATGAGTTTTTGTTGTGTCT+GGG | - | chr8_2:3469194-3469213 | None:intergenic | 35.0% |
| !! | TGATGAGTTTTTGTTGTGTC+TGG | - | chr8_2:3469195-3469214 | None:intergenic | 35.0% |
| ACTTGAGCATACAAGAGATA+AGG | + | chr8_2:3469349-3469368 | Msa1227990:CDS | 35.0% | |
| TAGATGGAGTTCAGTTATTC+CGG | + | chr8_2:3469395-3469414 | Msa1227990:CDS | 35.0% | |
| ! | TCTGATTCGACAAAACTAAC+CGG | - | chr8_2:3469417-3469436 | None:intergenic | 35.0% |
| TTTGTCGAATCAGAGGATTA+TGG | + | chr8_2:3469423-3469442 | Msa1227990:CDS | 35.0% | |
| ATCAGAGGATTATGGTTTCA+CGG | + | chr8_2:3469431-3469450 | Msa1227990:CDS | 35.0% | |
| ! | TGATTTCGGTGTAACGAAAT+CGG | + | chr8_2:3469587-3469606 | Msa1227990:CDS | 35.0% |
| ACATGAGATTGGACATTTGT+TGG | + | chr8_2:3469641-3469660 | Msa1227990:CDS | 35.0% | |
| CATGAGATTGGACATTTGTT+GGG | + | chr8_2:3469642-3469661 | Msa1227990:CDS | 35.0% | |
| ! | GTCACATAGTTCTTTGAAAG+AGG | + | chr8_2:3469668-3469687 | Msa1227990:CDS | 35.0% |
| CAGTAATGTATCCAAGTTTG+AGG | + | chr8_2:3469691-3469710 | Msa1227990:CDS | 35.0% | |
| AAATCAGCTCTTTCATCTCT+TGG | - | chr8_2:3469717-3469736 | None:intergenic | 35.0% | |
| ! | GACCACTGAGATCTAAAATT+TGG | - | chr8_2:3469786-3469805 | None:intergenic | 35.0% |
| TCTGATATCTCCACAAATCA+TGG | + | chr8_2:3469816-3469835 | Msa1227990:CDS | 35.0% | |
| AAACTTTGCACCATGATTTG+TGG | - | chr8_2:3469829-3469848 | None:intergenic | 35.0% | |
| ACAAATCATGGTGCAAAGTT+TGG | + | chr8_2:3469828-3469847 | Msa1227990:CDS | 35.0% | |
| ! | AAGTTTGGAGTTGACACTTT+CGG | + | chr8_2:3469843-3469862 | Msa1227990:CDS | 35.0% |
| !! | AGAAATGTGAAGGAGTATCT+GGG | - | chr8_2:3468868-3468887 | None:intergenic | 35.0% |
| AGTAGTGAAGAGAAATGTGA+AGG | - | chr8_2:3468878-3468897 | None:intergenic | 35.0% | |
| ! | GTGAAGATGATGATAATGTG+AGG | - | chr8_2:3468906-3468925 | None:intergenic | 35.0% |
| !!! | GTTTGTGATGGATATTTTGG+TGG | - | chr8_2:3468935-3468954 | None:intergenic | 35.0% |
| ! | ATGAATGTCATGGTTTGTGA+TGG | - | chr8_2:3468947-3468966 | None:intergenic | 35.0% |
| AAAGATACCTATCTCGTTTC+GGG | + | chr8_2:3469019-3469038 | Msa1227990:CDS | 35.0% | |
| CTTGAAGTCCAAGATTTCTT+TGG | - | chr8_2:3469113-3469132 | None:intergenic | 35.0% | |
| AATCTTGGACTTCAAGTAAC+TGG | + | chr8_2:3469117-3469136 | Msa1227990:CDS | 35.0% | |
| !! | GATGAGTTTTTGTTGTGTCT+GGG | - | chr8_2:3469194-3469213 | None:intergenic | 35.0% |
| !! | TGATGAGTTTTTGTTGTGTC+TGG | - | chr8_2:3469195-3469214 | None:intergenic | 35.0% |
| ACTTGAGCATACAAGAGATA+AGG | + | chr8_2:3469349-3469368 | Msa1227990:CDS | 35.0% | |
| TAGATGGAGTTCAGTTATTC+CGG | + | chr8_2:3469395-3469414 | Msa1227990:CDS | 35.0% | |
| ! | TCTGATTCGACAAAACTAAC+CGG | - | chr8_2:3469417-3469436 | None:intergenic | 35.0% |
| TTTGTCGAATCAGAGGATTA+TGG | + | chr8_2:3469423-3469442 | Msa1227990:CDS | 35.0% | |
| ATCAGAGGATTATGGTTTCA+CGG | + | chr8_2:3469431-3469450 | Msa1227990:CDS | 35.0% | |
| ! | TGATTTCGGTGTAACGAAAT+CGG | + | chr8_2:3469587-3469606 | Msa1227990:CDS | 35.0% |
| ACATGAGATTGGACATTTGT+TGG | + | chr8_2:3469641-3469660 | Msa1227990:CDS | 35.0% | |
| CATGAGATTGGACATTTGTT+GGG | + | chr8_2:3469642-3469661 | Msa1227990:CDS | 35.0% | |
| ! | GTCACATAGTTCTTTGAAAG+AGG | + | chr8_2:3469668-3469687 | Msa1227990:CDS | 35.0% |
| CAGTAATGTATCCAAGTTTG+AGG | + | chr8_2:3469691-3469710 | Msa1227990:CDS | 35.0% | |
| AAATCAGCTCTTTCATCTCT+TGG | - | chr8_2:3469717-3469736 | None:intergenic | 35.0% | |
| ! | GACCACTGAGATCTAAAATT+TGG | - | chr8_2:3469786-3469805 | None:intergenic | 35.0% |
| TCTGATATCTCCACAAATCA+TGG | + | chr8_2:3469816-3469835 | Msa1227990:CDS | 35.0% | |
| AAACTTTGCACCATGATTTG+TGG | - | chr8_2:3469829-3469848 | None:intergenic | 35.0% | |
| ACAAATCATGGTGCAAAGTT+TGG | + | chr8_2:3469828-3469847 | Msa1227990:CDS | 35.0% | |
| ! | AAGTTTGGAGTTGACACTTT+CGG | + | chr8_2:3469843-3469862 | Msa1227990:CDS | 35.0% |
| !! | GAGAAATGTGAAGGAGTATC+TGG | - | chr8_2:3468869-3468888 | None:intergenic | 40.0% |
| !!! | ATGGATATTTTGGTGGCTAG+TGG | - | chr8_2:3468928-3468947 | None:intergenic | 40.0% |
| TGGTGAAGCTATGAATGTCA+TGG | - | chr8_2:3468957-3468976 | None:intergenic | 40.0% | |
| ATTCATAGCTTCACCAATGC+TGG | + | chr8_2:3468961-3468980 | Msa1227990:CDS | 40.0% | |
| TAATGTACCCGAAACGAGAT+AGG | - | chr8_2:3469029-3469048 | None:intergenic | 40.0% | |
| CAAATGATCACACCAAGATG+TGG | + | chr8_2:3469165-3469184 | Msa1227990:CDS | 40.0% | |
| ! | ATTTTCCTGGAAAACCACGT+TGG | + | chr8_2:3469268-3469287 | Msa1227990:CDS | 40.0% |
| ATGCCAATGACACTAACCTA+TGG | + | chr8_2:3469300-3469319 | Msa1227990:CDS | 40.0% | |
| AAGCCATAGGTTAGTGTCAT+TGG | - | chr8_2:3469306-3469325 | None:intergenic | 40.0% | |
| TCAAACGAGCATTCTCTAGA+TGG | + | chr8_2:3469379-3469398 | Msa1227990:CDS | 40.0% | |
| !!! | GGTTAGTTTTGTCGAATCAG+AGG | + | chr8_2:3469416-3469435 | Msa1227990:CDS | 40.0% |
| ! | GGATTTTATAGTGGTGACCA+TGG | + | chr8_2:3469465-3469484 | Msa1227990:CDS | 40.0% |
| ACACCAAGAACTCCATCAAA+TGG | - | chr8_2:3469501-3469520 | None:intergenic | 40.0% | |
| TCAGTAGCAACACATGAGAT+TGG | + | chr8_2:3469630-3469649 | Msa1227990:CDS | 40.0% | |
| TAGATCTCAGTGGTCTTCAT+TGG | + | chr8_2:3469791-3469810 | Msa1227990:CDS | 40.0% | |
| ! | AGTTTGGAGTTGACACTTTC+GGG | + | chr8_2:3469844-3469863 | Msa1227990:CDS | 40.0% |
| !! | ACTTTCGGGTTCTCTATGAT+TGG | + | chr8_2:3469858-3469877 | Msa1227990:CDS | 40.0% |
| !! | GAGAAATGTGAAGGAGTATC+TGG | - | chr8_2:3468869-3468888 | None:intergenic | 40.0% |
| !!! | ATGGATATTTTGGTGGCTAG+TGG | - | chr8_2:3468928-3468947 | None:intergenic | 40.0% |
| TGGTGAAGCTATGAATGTCA+TGG | - | chr8_2:3468957-3468976 | None:intergenic | 40.0% | |
| ATTCATAGCTTCACCAATGC+TGG | + | chr8_2:3468961-3468980 | Msa1227990:CDS | 40.0% | |
| TAATGTACCCGAAACGAGAT+AGG | - | chr8_2:3469029-3469048 | None:intergenic | 40.0% | |
| CAAATGATCACACCAAGATG+TGG | + | chr8_2:3469165-3469184 | Msa1227990:CDS | 40.0% | |
| ! | ATTTTCCTGGAAAACCACGT+TGG | + | chr8_2:3469268-3469287 | Msa1227990:CDS | 40.0% |
| ATGCCAATGACACTAACCTA+TGG | + | chr8_2:3469300-3469319 | Msa1227990:CDS | 40.0% | |
| AAGCCATAGGTTAGTGTCAT+TGG | - | chr8_2:3469306-3469325 | None:intergenic | 40.0% | |
| TCAAACGAGCATTCTCTAGA+TGG | + | chr8_2:3469379-3469398 | Msa1227990:CDS | 40.0% | |
| !!! | GGTTAGTTTTGTCGAATCAG+AGG | + | chr8_2:3469416-3469435 | Msa1227990:CDS | 40.0% |
| ! | GGATTTTATAGTGGTGACCA+TGG | + | chr8_2:3469465-3469484 | Msa1227990:CDS | 40.0% |
| ACACCAAGAACTCCATCAAA+TGG | - | chr8_2:3469501-3469520 | None:intergenic | 40.0% | |
| TCAGTAGCAACACATGAGAT+TGG | + | chr8_2:3469630-3469649 | Msa1227990:CDS | 40.0% | |
| TAGATCTCAGTGGTCTTCAT+TGG | + | chr8_2:3469791-3469810 | Msa1227990:CDS | 40.0% | |
| ! | AGTTTGGAGTTGACACTTTC+GGG | + | chr8_2:3469844-3469863 | Msa1227990:CDS | 40.0% |
| !! | ACTTTCGGGTTCTCTATGAT+TGG | + | chr8_2:3469858-3469877 | Msa1227990:CDS | 40.0% |
| !! | TGAAGGAGTATCTGGGTGAT+AGG | - | chr8_2:3468861-3468880 | None:intergenic | 45.0% |
| GTAGTCACTTGAGAAGCCAT+AGG | - | chr8_2:3469319-3469338 | None:intergenic | 45.0% | |
| TATAGTGGTGACCATGGTGA+TGG | + | chr8_2:3469471-3469490 | Msa1227990:CDS | 45.0% | |
| GAGCCATTTGATGGAGTTCT+TGG | + | chr8_2:3469495-3469514 | Msa1227990:CDS | 45.0% | |
| AATCTCCGGTGAGAACGAAT+GGG | - | chr8_2:3469529-3469548 | None:intergenic | 45.0% | |
| AGGTGAAGTCTTCCAATCTC+CGG | - | chr8_2:3469543-3469562 | None:intergenic | 45.0% | |
| ! | TTTCGGTGTAACGAAATCGG+AGG | + | chr8_2:3469590-3469609 | Msa1227990:CDS | 45.0% |
| TCATCTCTTGGCCTCAAACT+TGG | - | chr8_2:3469705-3469724 | None:intergenic | 45.0% | |
| !! | TGAAGGAGTATCTGGGTGAT+AGG | - | chr8_2:3468861-3468880 | None:intergenic | 45.0% |
| GTAGTCACTTGAGAAGCCAT+AGG | - | chr8_2:3469319-3469338 | None:intergenic | 45.0% | |
| TATAGTGGTGACCATGGTGA+TGG | + | chr8_2:3469471-3469490 | Msa1227990:CDS | 45.0% | |
| GAGCCATTTGATGGAGTTCT+TGG | + | chr8_2:3469495-3469514 | Msa1227990:CDS | 45.0% | |
| AATCTCCGGTGAGAACGAAT+GGG | - | chr8_2:3469529-3469548 | None:intergenic | 45.0% | |
| AGGTGAAGTCTTCCAATCTC+CGG | - | chr8_2:3469543-3469562 | None:intergenic | 45.0% | |
| ! | TTTCGGTGTAACGAAATCGG+AGG | + | chr8_2:3469590-3469609 | Msa1227990:CDS | 45.0% |
| TCATCTCTTGGCCTCAAACT+TGG | - | chr8_2:3469705-3469724 | None:intergenic | 45.0% | |
| CAAATGGCTCACCATCACCA+TGG | - | chr8_2:3469485-3469504 | None:intergenic | 50.0% | |
| ! | GGTGATGGTGAGCCATTTGA+TGG | + | chr8_2:3469486-3469505 | Msa1227990:CDS | 50.0% |
| GTTAGCCCATTCGTTCTCAC+CGG | + | chr8_2:3469521-3469540 | Msa1227990:CDS | 50.0% | |
| CAATCTCCGGTGAGAACGAA+TGG | - | chr8_2:3469530-3469549 | None:intergenic | 50.0% | |
| CATTCGTTCTCACCGGAGAT+TGG | + | chr8_2:3469528-3469547 | Msa1227990:CDS | 50.0% | |
| GAAATCAACCGCCCAAGTCT+CGG | - | chr8_2:3469574-3469593 | None:intergenic | 50.0% | |
| ! | GAGACTTGGGCGGTTGATTT+CGG | + | chr8_2:3469573-3469592 | Msa1227990:CDS | 50.0% |
| CAAATGGCTCACCATCACCA+TGG | - | chr8_2:3469485-3469504 | None:intergenic | 50.0% | |
| ! | GGTGATGGTGAGCCATTTGA+TGG | + | chr8_2:3469486-3469505 | Msa1227990:CDS | 50.0% |
| GTTAGCCCATTCGTTCTCAC+CGG | + | chr8_2:3469521-3469540 | Msa1227990:CDS | 50.0% | |
| CAATCTCCGGTGAGAACGAA+TGG | - | chr8_2:3469530-3469549 | None:intergenic | 50.0% | |
| CATTCGTTCTCACCGGAGAT+TGG | + | chr8_2:3469528-3469547 | Msa1227990:CDS | 50.0% | |
| GAAATCAACCGCCCAAGTCT+CGG | - | chr8_2:3469574-3469593 | None:intergenic | 50.0% | |
| ! | GAGACTTGGGCGGTTGATTT+CGG | + | chr8_2:3469573-3469592 | Msa1227990:CDS | 50.0% |
| AGCTTCACCAATGCTGGCAG+AGG | + | chr8_2:3468967-3468986 | Msa1227990:CDS | 55.0% | |
| GTTGTTGCCTCTGCCAGCAT+TGG | - | chr8_2:3468977-3468996 | None:intergenic | 55.0% | |
| GGCAGAGGCAACAACATCAC+AGG | + | chr8_2:3468982-3469001 | Msa1227990:CDS | 55.0% | |
| ! | GTGTCTGGGACACCACATCT+TGG | - | chr8_2:3469180-3469199 | None:intergenic | 55.0% |
| ! | CGTGACCAACGTGGTTTTCC+AGG | - | chr8_2:3469276-3469295 | None:intergenic | 55.0% |
| CGGTGTAACGAAATCGGAGG+TGG | + | chr8_2:3469593-3469612 | Msa1227990:CDS | 55.0% | |
| AGCTTCACCAATGCTGGCAG+AGG | + | chr8_2:3468967-3468986 | Msa1227990:CDS | 55.0% | |
| GTTGTTGCCTCTGCCAGCAT+TGG | - | chr8_2:3468977-3468996 | None:intergenic | 55.0% | |
| GGCAGAGGCAACAACATCAC+AGG | + | chr8_2:3468982-3469001 | Msa1227990:CDS | 55.0% | |
| ! | GTGTCTGGGACACCACATCT+TGG | - | chr8_2:3469180-3469199 | None:intergenic | 55.0% |
| ! | CGTGACCAACGTGGTTTTCC+AGG | - | chr8_2:3469276-3469295 | None:intergenic | 55.0% |
| CGGTGTAACGAAATCGGAGG+TGG | + | chr8_2:3469593-3469612 | Msa1227990:CDS | 55.0% | |
| GGCATGTCACGTGACCAACG+TGG | - | chr8_2:3469285-3469304 | None:intergenic | 60.0% | |
| ACCTCGATGCAGCCGAGACT+TGG | + | chr8_2:3469559-3469578 | Msa1227990:CDS | 60.0% | |
| CCTCGATGCAGCCGAGACTT+GGG | + | chr8_2:3469560-3469579 | Msa1227990:CDS | 60.0% | |
| GGCATGTCACGTGACCAACG+TGG | - | chr8_2:3469285-3469304 | None:intergenic | 60.0% | |
| ACCTCGATGCAGCCGAGACT+TGG | + | chr8_2:3469559-3469578 | Msa1227990:CDS | 60.0% | |
| CCTCGATGCAGCCGAGACTT+GGG | + | chr8_2:3469560-3469579 | Msa1227990:CDS | 60.0% | |
| CCCAAGTCTCGGCTGCATCG+AGG | - | chr8_2:3469563-3469582 | None:intergenic | 65.0% | |
| CGATGCAGCCGAGACTTGGG+CGG | + | chr8_2:3469563-3469582 | Msa1227990:CDS | 65.0% | |
| CCCAAGTCTCGGCTGCATCG+AGG | - | chr8_2:3469563-3469582 | None:intergenic | 65.0% | |
| CGATGCAGCCGAGACTTGGG+CGG | + | chr8_2:3469563-3469582 | Msa1227990:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 3468853 | 3469926 | 3468853 | ID=Msa1227990;Name=Msa1227990 |
| chr8_2 | mRNA | 3468853 | 3469926 | 3468853 | ID=Msa1227990-mRNA-1;Parent=Msa1227990;Name=Msa1227990-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|-1|0|1|-1|1|1|0|357 |
| chr8_2 | exon | 3468853 | 3469926 | 3468853 | ID=Msa1227990-mRNA-1:exon:1076;Parent=Msa1227990-mRNA-1 |
| chr8_2 | CDS | 3468853 | 3469926 | 3468853 | ID=Msa1227990-mRNA-1:cds;Parent=Msa1227990-mRNA-1 |
| Gene Sequence |
| Protein sequence |
