Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1272540 | XP_013443993.1 | 99.387 | 326 | 0 | 1 | 1 | 326 | 1 | 324 | 0.0 | 643 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1272540 | sp|Q15428|SF3A2_HUMAN | 69.811 | 212 | 64 | 0 | 6 | 217 | 8 | 219 | 1.04e-92 | 286 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1272540 | A0A072TWV3 | 99.387 | 326 | 0 | 1 | 1 | 326 | 1 | 324 | 0.0 | 643 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1182620 | Msa1272540 | 0.895881 | 6.287804e-76 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1272540 | MtrunA17_Chr8g0337441 | 99.387 | 326 | 0 | 1 | 1 | 326 | 1 | 324 | 0.0 | 643 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1272540 | AT2G32600.1 | 85.153 | 229 | 33 | 1 | 1 | 229 | 1 | 228 | 6.16e-137 | 389 |
Find 130 sgRNAs with CRISPR-Local
Find 297 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGCTGTGGTTTGGTTGCCTC+TGG | 0.189969 | 8_3:+6241321 | None:intergenic |
| GGTAGTGGAGCTTGTGGTGG+TGG | 0.222430 | 8_3:+6241240 | None:intergenic |
| CTCCTTTACCTTGATATAGA+TGG | 0.237440 | 8_3:-6240785 | Msa1272540:three_prime_UTR |
| GCCAGTAACTGTTTGATTAC+AGG | 0.240484 | 8_3:-6240747 | Msa1272540:three_prime_UTR |
| GAGATGATTGCGCATGAAAT+AGG | 0.265040 | 8_3:+6244043 | None:intergenic |
| TCCTGTAATCAAACAGTTAC+TGG | 0.277371 | 8_3:+6240746 | None:intergenic |
| GATGCAATGAACAGGCAATT+TGG | 0.289926 | 8_3:+6240898 | None:intergenic |
| GTGGCGGCTCCGCCACTTCC+TGG | 0.292360 | 8_3:+6244143 | None:intergenic |
| ATGCAATGAACAGGCAATTT+GGG | 0.298212 | 8_3:+6240899 | None:intergenic |
| AGAGATCTTTGCTTCGTATC+AGG | 0.325334 | 8_3:+6243693 | None:intergenic |
| TGCCCTAGCTCTGCATTTGT+TGG | 0.330972 | 8_3:+6241001 | None:intergenic |
| AACGAGAACAAACCTGAAAA+AGG | 0.332371 | 8_3:+6243670 | None:intergenic |
| AGCAGCACGTTTAGCGAGAT+TGG | 0.337514 | 8_3:+6243935 | None:intergenic |
| TTATGAAACAATTTCTTTCA+AGG | 0.340909 | 8_3:-6241709 | Msa1272540:intron |
| GCTGTGGTTTGGTTGCCTCT+GGG | 0.347044 | 8_3:+6241322 | None:intergenic |
| ACTGTGAACATCTTTGAATC+TGG | 0.349285 | 8_3:+6241521 | None:intergenic |
| CCTTGTGGAGGTGGCATTGA+TGG | 0.350354 | 8_3:+6241033 | None:intergenic |
| GTAGTGGAGCTTGTGGTGGT+GGG | 0.364814 | 8_3:+6241241 | None:intergenic |
| GCTACCTCCCGGCGCACCTA+TGG | 0.367211 | 8_3:-6241193 | Msa1272540:CDS |
| TTGAAAGAAATTGTTTCATA+AGG | 0.372951 | 8_3:+6241711 | None:intergenic |
| ATGTTAACCTTCCTCTTATG+AGG | 0.379584 | 8_3:+6243879 | None:intergenic |
| CCTTGTGGAGGTGGTGGTGG+TGG | 0.384448 | 8_3:+6241216 | None:intergenic |
| AGCCCTTGTGGAGGTGGTGG+TGG | 0.387371 | 8_3:+6241213 | None:intergenic |
| CCACCTGCCTCTGCACCTAA+TGG | 0.401178 | 8_3:-6241300 | Msa1272540:CDS |
| GGGGCTGGCGGTGGAAGAGG+CGG | 0.403510 | 8_3:+6241072 | None:intergenic |
| TGTGGAGGTGGTGGTGGTGG+TGG | 0.404383 | 8_3:+6241219 | None:intergenic |
| GGTAGCCCTTGTGGAGGTGG+TGG | 0.404676 | 8_3:+6241210 | None:intergenic |
| GACTTATCAATTTCTGTGCT+TGG | 0.408241 | 8_3:+6241572 | None:intergenic |
| CTGTGGTTTGGTTGCCTCTG+GGG | 0.413045 | 8_3:+6241323 | None:intergenic |
| AGTGGAGCTTGTGGTGGTGG+GGG | 0.417612 | 8_3:+6241243 | None:intergenic |
| AGATGATTGCGCATGAAATA+GGG | 0.419841 | 8_3:+6244044 | None:intergenic |
| AAGGTTAACATGAAGAAATC+TGG | 0.420128 | 8_3:-6243867 | Msa1272540:intron |
| TAGCTCTGCATTTGTTGGCC+TGG | 0.421194 | 8_3:+6241006 | None:intergenic |
| AACAACAATGGACAGAGAAT+GGG | 0.425908 | 8_3:-6244174 | Msa1272540:exon |
| CAGTTAAGATTGGGAGGCCT+GGG | 0.428678 | 8_3:-6243740 | Msa1272540:CDS |
| GCCCCTCCACCTCCAATGTC+AGG | 0.429502 | 8_3:-6241156 | Msa1272540:CDS |
| TGTGGTTTGGTTGCCTCTGG+GGG | 0.431042 | 8_3:+6241324 | None:intergenic |
| CCAGGTGCTGTGGTGCCATT+AGG | 0.431539 | 8_3:+6241285 | None:intergenic |
| ACCTTCCTCTTATGAGGCTG+AGG | 0.432969 | 8_3:+6243885 | None:intergenic |
| TTTGCGAGGTCTTCGATCTC+AGG | 0.436901 | 8_3:+6241970 | None:intergenic |
| GGAGGTAGCCCTTGTGGAGG+TGG | 0.439056 | 8_3:+6241207 | None:intergenic |
| CATTGATGTATCAAGTTGTC+TGG | 0.439794 | 8_3:-6240849 | Msa1272540:three_prime_UTR |
| TTAAAAGTGTACCTGCTCAT+AGG | 0.440818 | 8_3:+6241924 | None:intergenic |
| CAACAACAATGGACAGAGAA+TGG | 0.445279 | 8_3:-6244175 | Msa1272540:exon |
| TGTACTAGCTACTATCGCTT+TGG | 0.447014 | 8_3:+6244230 | None:intergenic |
| GGTGCAGAGGCAGGTGGCTG+TGG | 0.447431 | 8_3:+6241306 | None:intergenic |
| TCCTTTACCTTGATATAGAT+GGG | 0.448712 | 8_3:-6240784 | Msa1272540:three_prime_UTR |
| CAGCTGCAAACAATAGATAC+TGG | 0.457637 | 8_3:+6241736 | None:intergenic |
| AGAGGCAGGTGGCTGTGGTT+TGG | 0.459653 | 8_3:+6241311 | None:intergenic |
| GCAGTTAAGATTGGGAGGCC+TGG | 0.462876 | 8_3:-6243741 | Msa1272540:intron |
| CTCAACCTCAGCCTCATAAG+AGG | 0.467222 | 8_3:-6243890 | Msa1272540:CDS |
| AGGCCAACAAATGCAGAGCT+AGG | 0.470252 | 8_3:-6241004 | Msa1272540:exon |
| TAGTGGAGCTTGTGGTGGTG+GGG | 0.472093 | 8_3:+6241242 | None:intergenic |
| CTACCTCCCGGCGCACCTAT+GGG | 0.475130 | 8_3:-6241192 | Msa1272540:CDS |
| ATTGCACCAGGTACAGATCT+AGG | 0.488177 | 8_3:+6241096 | None:intergenic |
| AATGCCACCACCACCTCCTA+TGG | 0.488452 | 8_3:-6241130 | Msa1272540:CDS |
| ATTGGAGGTGGAGGGGCCCG+TGG | 0.488633 | 8_3:+6241162 | None:intergenic |
| TCCTGACATTGGAGGTGGAG+GGG | 0.490414 | 8_3:+6241155 | None:intergenic |
| CTGTGAACATCTTTGAATCT+GGG | 0.493942 | 8_3:+6241522 | None:intergenic |
| GGATGCACCTTTATCCACTA+AGG | 0.495750 | 8_3:-6240940 | Msa1272540:three_prime_UTR |
| TCCCATCTATATCAAGGTAA+AGG | 0.503953 | 8_3:+6240783 | None:intergenic |
| GGTGGTAGTGGAGCTTGTGG+TGG | 0.508280 | 8_3:+6241237 | None:intergenic |
| GGAAGAGGCGGCATTGCACC+AGG | 0.509408 | 8_3:+6241084 | None:intergenic |
| CGCTAAACGTGCTGCTCGTG+AGG | 0.509943 | 8_3:-6243928 | Msa1272540:CDS |
| GGTGGTGGTAGTGGAGCTTG+TGG | 0.511018 | 8_3:+6241234 | None:intergenic |
| ATAGGCCTTGGTGGAACACC+AGG | 0.514817 | 8_3:+6241267 | None:intergenic |
| AGGATTTCCCATAGGTGCGC+CGG | 0.516220 | 8_3:+6241185 | None:intergenic |
| CCTGGAAAACCTTGTGGAGG+TGG | 0.518508 | 8_3:+6241024 | None:intergenic |
| GATGGAGGTCTAGTCCCAAT+GGG | 0.518889 | 8_3:+6241051 | None:intergenic |
| GCAGCCATAGGAGGTGGTGG+TGG | 0.522582 | 8_3:+6241126 | None:intergenic |
| CGAGTCGTCGGAGTCGTTCA+CGG | 0.523440 | 8_3:+6244096 | None:intergenic |
| GGATTTCCCATAGGTGCGCC+GGG | 0.524617 | 8_3:+6241186 | None:intergenic |
| AGAGAATGGGGTTCAAAACC+AGG | 0.530659 | 8_3:-6244161 | Msa1272540:CDS |
| CCTAATGGCACCACAGCACC+TGG | 0.537047 | 8_3:-6241285 | Msa1272540:CDS |
| ATTTATGTCCTCCTATGAGC+AGG | 0.542578 | 8_3:-6241935 | Msa1272540:intron |
| GATCCTGACATTGGAGGTGG+AGG | 0.544166 | 8_3:+6241153 | None:intergenic |
| TGATGGAGGTCTAGTCCCAA+TGG | 0.544944 | 8_3:+6241050 | None:intergenic |
| TTTGCAGCCATAGGAGGTGG+TGG | 0.550310 | 8_3:+6241123 | None:intergenic |
| GTGCCATTAGGTGCAGAGGC+AGG | 0.551727 | 8_3:+6241297 | None:intergenic |
| CCACCACCACCACCTCCACA+AGG | 0.552336 | 8_3:-6241216 | Msa1272540:CDS |
| TTTATTATTTATGTTGACCA+TGG | 0.557763 | 8_3:-6240824 | Msa1272540:three_prime_UTR |
| TGGTGGAACACCAGGTGCTG+TGG | 0.557787 | 8_3:+6241275 | None:intergenic |
| TATTGAGTGTTTAAAAGTTG+TGG | 0.558339 | 8_3:-6240965 | Msa1272540:three_prime_UTR |
| ACCTATGGGAAATCCTCCAC+GGG | 0.559129 | 8_3:-6241178 | Msa1272540:CDS |
| TTATGAGGCTGAGGTTGAGT+AGG | 0.562676 | 8_3:+6243894 | None:intergenic |
| CCATTAGGTGCAGAGGCAGG+TGG | 0.565316 | 8_3:+6241300 | None:intergenic |
| CCACCTCCTATGGCTGCAAA+CGG | 0.566286 | 8_3:-6241120 | Msa1272540:CDS |
| CCTCCACAAGGGCTACCTCC+CGG | 0.569045 | 8_3:-6241204 | Msa1272540:CDS |
| TTGTTTCGAGAGCGAGTCGT+CGG | 0.569489 | 8_3:+6244084 | None:intergenic |
| ATCGATGTCTCGGCTTTGCG+AGG | 0.569553 | 8_3:+6241956 | None:intergenic |
| GGAGGTGGAGGGGCCCGTGG+AGG | 0.570915 | 8_3:+6241165 | None:intergenic |
| GGCCAACAAATGCAGAGCTA+GGG | 0.571723 | 8_3:-6241003 | Msa1272540:exon |
| CCGTTTGCAGCCATAGGAGG+TGG | 0.572311 | 8_3:+6241120 | None:intergenic |
| CACCTATGGGAAATCCTCCA+CGG | 0.572815 | 8_3:-6241179 | Msa1272540:CDS |
| GGCATTGATCCTGACATTGG+AGG | 0.577806 | 8_3:+6241147 | None:intergenic |
| GCTAAAACAAGTACATCCCT+AGG | 0.579138 | 8_3:-6240709 | None:intergenic |
| GGACCGTTTGCAGCCATAGG+AGG | 0.584580 | 8_3:+6241117 | None:intergenic |
| TGGGGTTCAAAACCAGGAAG+TGG | 0.584935 | 8_3:-6244155 | Msa1272540:CDS |
| CTAGGACCGTTTGCAGCCAT+AGG | 0.585425 | 8_3:+6241114 | None:intergenic |
| AACTACCTCGCTCATACTCA+AGG | 0.586776 | 8_3:-6243972 | Msa1272540:CDS |
| GGTGGCATTGATCCTGACAT+TGG | 0.586792 | 8_3:+6241144 | None:intergenic |
| TGCTTAGTCACACGGTACCC+AGG | 0.587850 | 8_3:+6243723 | None:intergenic |
| GAGGACATAAATCGATGTCT+CGG | 0.588789 | 8_3:+6241946 | None:intergenic |
| ATCCTGACATTGGAGGTGGA+GGG | 0.597160 | 8_3:+6241154 | None:intergenic |
| TATTTCATGCGCAATCATCT+CGG | 0.597383 | 8_3:-6244041 | Msa1272540:CDS |
| GAGTGTTTAAAAGTTGTGGT+TGG | 0.598963 | 8_3:-6240961 | Msa1272540:three_prime_UTR |
| ACCTCAGCCTCATAAGAGGA+AGG | 0.605414 | 8_3:-6243886 | Msa1272540:CDS |
| TGTGGTGCCATTAGGTGCAG+AGG | 0.614977 | 8_3:+6241293 | None:intergenic |
| AAAGTGTACCTGCTCATAGG+AGG | 0.615464 | 8_3:+6241927 | None:intergenic |
| ATTGATCCTGACATTGGAGG+TGG | 0.623232 | 8_3:+6241150 | None:intergenic |
| TGCAATGAACAGGCAATTTG+GGG | 0.625850 | 8_3:+6240900 | None:intergenic |
| GCCCGTGGAGGATTTCCCAT+AGG | 0.626149 | 8_3:+6241177 | None:intergenic |
| TGTTGGCCTGGAAAACCTTG+TGG | 0.626757 | 8_3:+6241018 | None:intergenic |
| TGTGGAGGTGGCATTGATGG+AGG | 0.627797 | 8_3:+6241036 | None:intergenic |
| AACGGTCCTAGATCTGTACC+TGG | 0.633667 | 8_3:-6241102 | Msa1272540:CDS |
| CCGGGAGGTAGCCCTTGTGG+AGG | 0.636472 | 8_3:+6241204 | None:intergenic |
| ACAACAATGGACAGAGAATG+GGG | 0.640553 | 8_3:-6244173 | Msa1272540:exon |
| GAACTACACTTTGTAGACCA+TGG | 0.643434 | 8_3:+6240807 | None:intergenic |
| CCATCAATGCCACCTCCACA+AGG | 0.643855 | 8_3:-6241033 | Msa1272540:CDS |
| CACCACCACCACCTCCACAA+GGG | 0.645170 | 8_3:-6241215 | Msa1272540:CDS |
| GGTTCAAAACCAGGAAGTGG+CGG | 0.646802 | 8_3:-6244152 | Msa1272540:CDS |
| TGGCCTGGAAAACCTTGTGG+AGG | 0.647536 | 8_3:+6241021 | None:intergenic |
| TAAGCACTGAGCAACAACAA+TGG | 0.652548 | 8_3:-6244186 | Msa1272540:exon |
| TGGAGGTCTAGTCCCAATGG+GGG | 0.665514 | 8_3:+6241053 | None:intergenic |
| CTCACTCTTCACAACAACGA+AGG | 0.681289 | 8_3:-6243996 | Msa1272540:CDS |
| CAGCACCTGGTGTTCCACCA+AGG | 0.689929 | 8_3:-6241272 | Msa1272540:CDS |
| ATGGAGGTCTAGTCCCAATG+GGG | 0.691864 | 8_3:+6241052 | None:intergenic |
| GATCAAATTGCTTAGTCACA+CGG | 0.703542 | 8_3:+6243715 | None:intergenic |
| TGAGAAACGAAAAGTGCATG+TGG | 0.710998 | 8_3:+6244264 | None:intergenic |
| GTCGTCGGAGTCGTTCACGG+CGG | 0.760225 | 8_3:+6244099 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAAGTTATTTAATTATAC+TGG | - | chr8_3:6241402-6241421 | Msa1272540:intron | 10.0% |
| !!! | TATATATTTCAAATTGATTT+TGG | - | chr8_3:6242030-6242049 | Msa1272540:intron | 10.0% |
| !!! | ATATATTTCAAATTGATTTT+GGG | - | chr8_3:6242031-6242050 | Msa1272540:intron | 10.0% |
| !!! | TTTATTATTTATCATGTTTT+GGG | - | chr8_3:6243318-6243337 | Msa1272540:intron | 10.0% |
| !! | AACAATTAAACAATGATTAA+GGG | + | chr8_3:6241155-6241174 | None:intergenic | 15.0% |
| !! | TAACAATTAAACAATGATTA+AGG | + | chr8_3:6241156-6241175 | None:intergenic | 15.0% |
| !! | ATCATTGTTTAATTGTTAAT+TGG | - | chr8_3:6241158-6241177 | Msa1272540:CDS | 15.0% |
| !! | TCATTGTTTAATTGTTAATT+GGG | - | chr8_3:6241159-6241178 | Msa1272540:CDS | 15.0% |
| !!! | GATAATTAGTTTGATTAATT+GGG | - | chr8_3:6241181-6241200 | Msa1272540:CDS | 15.0% |
| !!! | GTTTATTATTTATCATGTTT+TGG | - | chr8_3:6243317-6243336 | Msa1272540:intron | 15.0% |
| !! | ACAATTAAACAATGATTAAG+GGG | + | chr8_3:6241154-6241173 | None:intergenic | 20.0% |
| !!! | GGATAATTAGTTTGATTAAT+TGG | - | chr8_3:6241180-6241199 | Msa1272540:CDS | 20.0% |
| !!! | TTTTATTATTTGTGTGTTTG+TGG | - | chr8_3:6241212-6241231 | Msa1272540:CDS | 20.0% |
| !! | TTTATTATTTGTGTGTTTGT+GGG | - | chr8_3:6241213-6241232 | Msa1272540:CDS | 20.0% |
| !! | TGTTCGTTAAGTTATATTAT+AGG | - | chr8_3:6241361-6241380 | Msa1272540:intron | 20.0% |
| !!! | AAATAAAGTCAAACTGTTTT+TGG | - | chr8_3:6241533-6241552 | Msa1272540:CDS | 20.0% |
| !!! | GTTGTTTTTATAAGTTATCT+TGG | - | chr8_3:6241573-6241592 | Msa1272540:CDS | 20.0% |
| !! | GATATGTTCAAATAACTTAA+AGG | - | chr8_3:6241942-6241961 | Msa1272540:CDS | 20.0% |
| !! | TATCTAAATGAGTTGTAATT+AGG | - | chr8_3:6242415-6242434 | Msa1272540:intron | 20.0% |
| !! | TTGAAAGAAATTGTTTCATA+AGG | + | chr8_3:6243280-6243299 | None:intergenic | 20.0% |
| !! | TTATGAAACAATTTCTTTCA+AGG | - | chr8_3:6243279-6243298 | Msa1272540:intron | 20.0% |
| !! | TTGATTAACAAAGTACAAAA+AGG | + | chr8_3:6243381-6243400 | None:intergenic | 20.0% |
| !!! | TTTTATCTTAGAAAAGAAAG+AGG | + | chr8_3:6243505-6243524 | None:intergenic | 20.0% |
| !! | AAAAATTATGTAAACTAGGA+TGG | + | chr8_3:6243536-6243555 | None:intergenic | 20.0% |
| !! | ACACAAAAATTATGTAAACT+AGG | + | chr8_3:6243540-6243559 | None:intergenic | 20.0% |
| !! | TTTATTATTTATGTTGACCA+TGG | - | chr8_3:6244164-6244183 | Msa1272540:CDS | 20.0% |
| !!! | TTGTTTTTTGCAGTTAAGAT+TGG | - | chr8_3:6241238-6241257 | Msa1272540:CDS | 25.0% |
| !!! | TGTTTTTTGCAGTTAAGATT+GGG | - | chr8_3:6241239-6241258 | Msa1272540:CDS | 25.0% |
| !!! | TATAGGTGAAATTGTTTTTG+TGG | - | chr8_3:6241378-6241397 | Msa1272540:intron | 25.0% |
| ! | CTGGATTAATAATAAGTTCT+AGG | - | chr8_3:6241421-6241440 | Msa1272540:intron | 25.0% |
| !! | TTTTTATAAGTTATCTTGGC+AGG | - | chr8_3:6241577-6241596 | Msa1272540:CDS | 25.0% |
| ! | AGTTATTTGAACATATCTAC+CGG | + | chr8_3:6241939-6241958 | None:intergenic | 25.0% |
| ! | TGTTCAAATAACTTAAAGGA+TGG | - | chr8_3:6241946-6241965 | Msa1272540:CDS | 25.0% |
| !!! | TTGATTTTGGGAAAATTTAG+AGG | - | chr8_3:6242043-6242062 | Msa1272540:intron | 25.0% |
| ! | ACCAAAAAAAGAAGAAAGAA+TGG | - | chr8_3:6242180-6242199 | Msa1272540:intron | 25.0% |
| !!! | TCCATTCTTTCTTCTTTTTT+TGG | + | chr8_3:6242184-6242203 | None:intergenic | 25.0% |
| ! | AAGTCTTAGAGAGAAAATTA+GGG | - | chr8_3:6242203-6242222 | Msa1272540:intron | 25.0% |
| !!! | TAAAAAGTAGTTGGTTTGTT+TGG | - | chr8_3:6242262-6242281 | Msa1272540:intron | 25.0% |
| !!! | AAAAAGTAGTTGGTTTGTTT+GGG | - | chr8_3:6242263-6242282 | Msa1272540:intron | 25.0% |
| !! | TGAAGGATAACACAAATTTT+AGG | - | chr8_3:6242341-6242360 | Msa1272540:intron | 25.0% |
| !! | GAAGGATAACACAAATTTTA+GGG | - | chr8_3:6242342-6242361 | Msa1272540:intron | 25.0% |
| !!! | TTTAAGTTGCACTATTAAGA+AGG | - | chr8_3:6242387-6242406 | Msa1272540:intron | 25.0% |
| !!! | AGGTACAATTTACTTTTGAT+AGG | - | chr8_3:6242435-6242454 | Msa1272540:intron | 25.0% |
| !!! | ACATATTGGTTGGTTTATTT+GGG | - | chr8_3:6242631-6242650 | Msa1272540:intron | 25.0% |
| ! | TGATAGATAGTACAAGTATT+AGG | - | chr8_3:6242712-6242731 | Msa1272540:intron | 25.0% |
| ! | GATAGATAGTACAAGTATTA+GGG | - | chr8_3:6242713-6242732 | Msa1272540:intron | 25.0% |
| ! | ATAGATAGTACAAGTATTAG+GGG | - | chr8_3:6242714-6242733 | Msa1272540:intron | 25.0% |
| ! | TAGAATCAAACGATTCTTAA+TGG | + | chr8_3:6242777-6242796 | None:intergenic | 25.0% |
| ! | ACACAAATACAATTCATGAT+AGG | - | chr8_3:6242813-6242832 | Msa1272540:intron | 25.0% |
| !! | TCACATTTTTATGTATACAG+AGG | - | chr8_3:6243206-6243225 | Msa1272540:intron | 25.0% |
| !! | TACTGGTATCTTTTATCAAA+TGG | + | chr8_3:6243238-6243257 | None:intergenic | 25.0% |
| ! | TACATACATATATTGAGTTC+CGG | - | chr8_3:6243348-6243367 | Msa1272540:intron | 25.0% |
| ! | AGTACAAAAAGGTAAATTTC+CGG | + | chr8_3:6243370-6243389 | None:intergenic | 25.0% |
| ! | TGTGATTGTGAATAAGTTAA+CGG | - | chr8_3:6243557-6243576 | Msa1272540:intron | 25.0% |
| ! | TATTGAGTGTTTAAAAGTTG+TGG | - | chr8_3:6244023-6244042 | Msa1272540:CDS | 25.0% |
| ! | AAAAATTCCCATCTATATCA+AGG | + | chr8_3:6244214-6244233 | None:intergenic | 25.0% |
| AAGGTTAACATGAAGAAATC+TGG | - | chr8_3:6241121-6241140 | Msa1272540:CDS | 30.0% | |
| !! | AATAAGTTCTAGGTCATGTT+TGG | - | chr8_3:6241431-6241450 | Msa1272540:intron | 30.0% |
| !!! | AGTCAAACTGTTTTTGGATA+AGG | - | chr8_3:6241539-6241558 | Msa1272540:CDS | 30.0% |
| ! | AATAAGTTGAACACAGCTAA+TGG | - | chr8_3:6241608-6241627 | Msa1272540:intron | 30.0% |
| !! | TGCTAGCTCTTAGATTTTAA+TGG | - | chr8_3:6242006-6242025 | Msa1272540:intron | 30.0% |
| TTGGGAAAATTTAGAGGATT+AGG | - | chr8_3:6242049-6242068 | Msa1272540:intron | 30.0% | |
| TGTATATGAGAAGATACATG+AGG | - | chr8_3:6242081-6242100 | Msa1272540:intron | 30.0% | |
| AGATACATGAGGATTAAGAA+TGG | - | chr8_3:6242092-6242111 | Msa1272540:intron | 30.0% | |
| GAAGTCTTAGAGAGAAAATT+AGG | - | chr8_3:6242202-6242221 | Msa1272540:intron | 30.0% | |
| TATTAGTGGAGAATATGATG+TGG | - | chr8_3:6242233-6242252 | Msa1272540:intron | 30.0% | |
| TGGTAGAGTTAAAAAGTAGT+TGG | - | chr8_3:6242253-6242272 | Msa1272540:intron | 30.0% | |
| ATAAATGACAGTGAAGATAG+TGG | - | chr8_3:6242312-6242331 | Msa1272540:intron | 30.0% | |
| !! | GATAGAGAGAGTATTATGAT+AGG | - | chr8_3:6242551-6242570 | Msa1272540:intron | 30.0% |
| AAACCGTAGAGAGAAAATTA+GGG | - | chr8_3:6242578-6242597 | Msa1272540:intron | 30.0% | |
| !! | CACATATTGGTTGGTTTATT+TGG | - | chr8_3:6242630-6242649 | Msa1272540:intron | 30.0% |
| AAGAATCGTTTGATTCTAAG+TGG | - | chr8_3:6242779-6242798 | Msa1272540:intron | 30.0% | |
| CAATTCATGATAGGACATTA+TGG | - | chr8_3:6242822-6242841 | Msa1272540:intron | 30.0% | |
| TCAATGTTGAGAAAATCACA+AGG | + | chr8_3:6242936-6242955 | None:intergenic | 30.0% | |
| AAAGCCATGTCTTAACATTT+CGG | - | chr8_3:6243171-6243190 | Msa1272540:intron | 30.0% | |
| AAAACCGAAATGTTAAGACA+TGG | + | chr8_3:6243178-6243197 | None:intergenic | 30.0% | |
| AAAAATGAGATGCAATGAAC+AGG | + | chr8_3:6244101-6244120 | None:intergenic | 30.0% | |
| TCCTTTACCTTGATATAGAT+GGG | - | chr8_3:6244204-6244223 | Msa1272540:five_prime_UTR | 30.0% | |
| !!! | TAGATGGGAATTTTTTTGCT+TGG | - | chr8_3:6244219-6244238 | Msa1272540:five_prime_UTR | 30.0% |
| AACAACAATGGACAGAGAAT+GGG | - | chr8_3:6240814-6240833 | Msa1272540:three_prime_UTR | 35.0% | |
| AGATGATTGCGCATGAAATA+GGG | + | chr8_3:6240947-6240966 | None:intergenic | 35.0% | |
| TATTTCATGCGCAATCATCT+CGG | - | chr8_3:6240947-6240966 | Msa1272540:three_prime_UTR | 35.0% | |
| ATGTTAACCTTCCTCTTATG+AGG | + | chr8_3:6241112-6241131 | None:intergenic | 35.0% | |
| ! | TTTTTGCAGTTAAGATTGGG+AGG | - | chr8_3:6241242-6241261 | Msa1272540:CDS | 35.0% |
| GATCAAATTGCTTAGTCACA+CGG | + | chr8_3:6241276-6241295 | None:intergenic | 35.0% | |
| AACGAGAACAAACCTGAAAA+AGG | + | chr8_3:6241321-6241340 | None:intergenic | 35.0% | |
| AAGTTATCTTGGCAGGTTTA+TGG | - | chr8_3:6241584-6241603 | Msa1272540:intron | 35.0% | |
| !!! | GTTGCTTTTATAAGTTGTGC+TGG | - | chr8_3:6241823-6241842 | Msa1272540:intron | 35.0% |
| ! | CTTTTATAAGTTGTGCTGGA+GGG | - | chr8_3:6241827-6241846 | Msa1272540:intron | 35.0% |
| AAAAACATGTGACACTGGTA+GGG | + | chr8_3:6241913-6241932 | None:intergenic | 35.0% | |
| TAAAAACATGTGACACTGGT+AGG | + | chr8_3:6241914-6241933 | None:intergenic | 35.0% | |
| !! | AGTGTCACATGTTTTTATGC+CGG | - | chr8_3:6241917-6241936 | Msa1272540:intron | 35.0% |
| ! | ATTTAGAGGATTAGGAGTAC+TGG | - | chr8_3:6242057-6242076 | Msa1272540:intron | 35.0% |
| !!! | TTTTTTTGGTGTTAACCCTC+TGG | + | chr8_3:6242170-6242189 | None:intergenic | 35.0% |
| !! | GAAGATAGTGGATCAAATGA+AGG | - | chr8_3:6242324-6242343 | Msa1272540:intron | 35.0% |
| !! | AACACAAATTTTAGGGACAG+AGG | - | chr8_3:6242349-6242368 | Msa1272540:intron | 35.0% |
| !! | ACACAAATTTTAGGGACAGA+GGG | - | chr8_3:6242350-6242369 | Msa1272540:intron | 35.0% |
| GAAACCGTAGAGAGAAAATT+AGG | - | chr8_3:6242577-6242596 | Msa1272540:intron | 35.0% | |
| ! | CTACCCTAATTTTCTCTCTA+CGG | + | chr8_3:6242584-6242603 | None:intergenic | 35.0% |
| TAGCACGGTTCTATAAAAGA+TGG | - | chr8_3:6242601-6242620 | Msa1272540:intron | 35.0% | |
| GACTTGTAGAAATACTAGTG+AGG | - | chr8_3:6242676-6242695 | Msa1272540:intron | 35.0% | |
| TTCATGATAGGACATTATGG+TGG | - | chr8_3:6242825-6242844 | Msa1272540:intron | 35.0% | |
| ! | CAGTCTATTCTCACATTTTC+GGG | + | chr8_3:6242869-6242888 | None:intergenic | 35.0% |
| ! | GCAGTCTATTCTCACATTTT+CGG | + | chr8_3:6242870-6242889 | None:intergenic | 35.0% |
| ! | TTAAAAGTGTACCTGCTCAT+AGG | + | chr8_3:6243067-6243086 | None:intergenic | 35.0% |
| ACACACACACACAAAAAGAT+AGG | + | chr8_3:6243110-6243129 | None:intergenic | 35.0% | |
| TGTTAATCAATCCACATCTC+AGG | - | chr8_3:6243391-6243410 | Msa1272540:intron | 35.0% | |
| GACTTATCAATTTCTGTGCT+TGG | + | chr8_3:6243419-6243438 | None:intergenic | 35.0% | |
| ! | TCCAAAGTTTTTCTCGCATT+GGG | - | chr8_3:6243442-6243461 | Msa1272540:intron | 35.0% |
| CTGTGAACATCTTTGAATCT+GGG | + | chr8_3:6243469-6243488 | None:intergenic | 35.0% | |
| ACTGTGAACATCTTTGAATC+TGG | + | chr8_3:6243470-6243489 | None:intergenic | 35.0% | |
| GAGTGTTTAAAAGTTGTGGT+TGG | - | chr8_3:6244027-6244046 | Msa1272540:CDS | 35.0% | |
| !! | TTTTGAGCCTTAGTGGATAA+AGG | + | chr8_3:6244058-6244077 | None:intergenic | 35.0% |
| !!! | TGTTTTGTTTTGAGCCTTAG+TGG | + | chr8_3:6244065-6244084 | None:intergenic | 35.0% |
| ATGCAATGAACAGGCAATTT+GGG | + | chr8_3:6244092-6244111 | None:intergenic | 35.0% | |
| ! | CATTGATGTATCAAGTTGTC+TGG | - | chr8_3:6244139-6244158 | Msa1272540:CDS | 35.0% |
| CTCCTTTACCTTGATATAGA+TGG | - | chr8_3:6244203-6244222 | Msa1272540:five_prime_UTR | 35.0% | |
| TCCCATCTATATCAAGGTAA+AGG | + | chr8_3:6244208-6244227 | None:intergenic | 35.0% | |
| TCCTGTAATCAAACAGTTAC+TGG | + | chr8_3:6244245-6244264 | None:intergenic | 35.0% | |
| ! | TGAGAAACGAAAAGTGCATG+TGG | + | chr8_3:6240727-6240746 | None:intergenic | 40.0% |
| TGTACTAGCTACTATCGCTT+TGG | + | chr8_3:6240761-6240780 | None:intergenic | 40.0% | |
| !! | TAAGCACTGAGCAACAACAA+TGG | - | chr8_3:6240802-6240821 | Msa1272540:three_prime_UTR | 40.0% |
| CAACAACAATGGACAGAGAA+TGG | - | chr8_3:6240813-6240832 | Msa1272540:three_prime_UTR | 40.0% | |
| ACAACAATGGACAGAGAATG+GGG | - | chr8_3:6240815-6240834 | Msa1272540:three_prime_UTR | 40.0% | |
| !! | TATAGCTTCGTTTTGAGCTG+TGG | + | chr8_3:6240867-6240886 | None:intergenic | 40.0% |
| GAGATGATTGCGCATGAAAT+AGG | + | chr8_3:6240948-6240967 | None:intergenic | 40.0% | |
| AGAGATCTTTGCTTCGTATC+AGG | + | chr8_3:6241298-6241317 | None:intergenic | 40.0% | |
| ! | GCAAAGATCTCTCCTTTTTC+AGG | - | chr8_3:6241306-6241325 | Msa1272540:CDS | 40.0% |
| ! | GCTTTTATAAGTTGTGCTGG+AGG | - | chr8_3:6241826-6241845 | Msa1272540:intron | 40.0% |
| GGCATAAAAACATGTGACAC+TGG | + | chr8_3:6241918-6241937 | None:intergenic | 40.0% | |
| TTAAGAATGGAAGTCTCTCC+CGG | - | chr8_3:6242105-6242124 | Msa1272540:intron | 40.0% | |
| ACAACCACTATCACTACTAC+CGG | + | chr8_3:6242497-6242516 | None:intergenic | 40.0% | |
| TCGATTACACTTCTCCATGT+GGG | - | chr8_3:6242522-6242541 | Msa1272540:intron | 40.0% | |
| TCTCTATCCTAATACCCACA+TGG | + | chr8_3:6242539-6242558 | None:intergenic | 40.0% | |
| GAGAGAAAATTAGGGTAGCA+CGG | - | chr8_3:6242586-6242605 | Msa1272540:intron | 40.0% | |
| CACGGTTCTATAAAAGATGG+CGG | - | chr8_3:6242604-6242623 | Msa1272540:intron | 40.0% | |
| GGTTTATTTGGGTATGTGTG+TGG | - | chr8_3:6242642-6242661 | Msa1272540:intron | 40.0% | |
| AAGTATTAGGGGTTGACATG+AGG | - | chr8_3:6242725-6242744 | Msa1272540:intron | 40.0% | |
| AGTATTAGGGGTTGACATGA+GGG | - | chr8_3:6242726-6242745 | Msa1272540:intron | 40.0% | |
| !!! | TCTCACATTTTCGGGTACAT+GGG | + | chr8_3:6242861-6242880 | None:intergenic | 40.0% |
| !!! | TTCTCACATTTTCGGGTACA+TGG | + | chr8_3:6242862-6242881 | None:intergenic | 40.0% |
| GAGGACATAAATCGATGTCT+CGG | + | chr8_3:6243045-6243064 | None:intergenic | 40.0% | |
| ATTTATGTCCTCCTATGAGC+AGG | - | chr8_3:6243053-6243072 | Msa1272540:intron | 40.0% | |
| ACACACAAAAAGATAGGAGG+CGG | + | chr8_3:6243104-6243123 | None:intergenic | 40.0% | |
| CACACACACAAAAAGATAGG+AGG | + | chr8_3:6243107-6243126 | None:intergenic | 40.0% | |
| CAGCTGCAAACAATAGATAC+TGG | + | chr8_3:6243255-6243274 | None:intergenic | 40.0% | |
| ! | ATGCGAGAAAAACTTTGGAG+TGG | + | chr8_3:6243441-6243460 | None:intergenic | 40.0% |
| ! | CTCCAAAGTTTTTCTCGCAT+TGG | - | chr8_3:6243441-6243460 | Msa1272540:intron | 40.0% |
| TCCCAATGCGAGAAAAACTT+TGG | + | chr8_3:6243446-6243465 | None:intergenic | 40.0% | |
| TGCAATGAACAGGCAATTTG+GGG | + | chr8_3:6244091-6244110 | None:intergenic | 40.0% | |
| GATGCAATGAACAGGCAATT+TGG | + | chr8_3:6244093-6244112 | None:intergenic | 40.0% | |
| GAACTACACTTTGTAGACCA+TGG | + | chr8_3:6244184-6244203 | None:intergenic | 40.0% | |
| GCCAGTAACTGTTTGATTAC+AGG | - | chr8_3:6244241-6244260 | Msa1272540:five_prime_UTR | 40.0% | |
| AGAGAATGGGGTTCAAAACC+AGG | - | chr8_3:6240827-6240846 | Msa1272540:three_prime_UTR | 45.0% | |
| CTCACTCTTCACAACAACGA+AGG | - | chr8_3:6240992-6241011 | Msa1272540:exon | 45.0% | |
| AACTACCTCGCTCATACTCA+AGG | - | chr8_3:6241016-6241035 | Msa1272540:CDS | 45.0% | |
| ! | GTTTTCCTTGAGTATGAGCG+AGG | + | chr8_3:6241024-6241043 | None:intergenic | 45.0% |
| TTATGAGGCTGAGGTTGAGT+AGG | + | chr8_3:6241097-6241116 | None:intergenic | 45.0% | |
| !! | GAGTGAGACTTAGCTCTGTT+TGG | - | chr8_3:6241696-6241715 | Msa1272540:intron | 45.0% |
| AAGTTGTGCTGGAGGGTTTA+TGG | - | chr8_3:6241834-6241853 | Msa1272540:intron | 45.0% | |
| AAGTAATCCAGAGTATGGCC+GGG | + | chr8_3:6242126-6242145 | None:intergenic | 45.0% | |
| CAAGTAATCCAGAGTATGGC+CGG | + | chr8_3:6242127-6242146 | None:intergenic | 45.0% | |
| GGCCATACTCTGGATTACTT+GGG | - | chr8_3:6242126-6242145 | Msa1272540:intron | 45.0% | |
| GACCCAAGTAATCCAGAGTA+TGG | + | chr8_3:6242131-6242150 | None:intergenic | 45.0% | |
| ! | TGTTAACCCTCTGGTTCCTA+GGG | + | chr8_3:6242161-6242180 | None:intergenic | 45.0% |
| ATTAGGGCAGCGCTTATTAG+TGG | - | chr8_3:6242219-6242238 | Msa1272540:intron | 45.0% | |
| !! | TTGGTTTGTTTGGGTGTGTG+TGG | - | chr8_3:6242272-6242291 | Msa1272540:intron | 45.0% |
| !! | TGGTTTGTTTGGGTGTGTGT+GGG | - | chr8_3:6242273-6242292 | Msa1272540:intron | 45.0% |
| AACTCCATGAGAGAAGACTC+CGG | - | chr8_3:6242475-6242494 | Msa1272540:intron | 45.0% | |
| GTCGATTACACTTCTCCATG+TGG | - | chr8_3:6242521-6242540 | Msa1272540:intron | 45.0% | |
| CACTTCTCCATGTGGGTATT+AGG | - | chr8_3:6242529-6242548 | Msa1272540:intron | 45.0% | |
| !! | AAGATGGCGGAGTCACATAT+TGG | - | chr8_3:6242617-6242636 | Msa1272540:intron | 45.0% |
| GGGACATCAAAGAAGACTGT+TGG | - | chr8_3:6242746-6242765 | Msa1272540:intron | 45.0% | |
| AGAATAGACTGCACTGTTGC+TGG | - | chr8_3:6242878-6242897 | Msa1272540:intron | 45.0% | |
| AAAGTGTACCTGCTCATAGG+AGG | + | chr8_3:6243064-6243083 | None:intergenic | 45.0% | |
| !!! | TTTTAAAACCAAGCCCCCAG+AGG | - | chr8_3:6243651-6243670 | Msa1272540:intron | 45.0% |
| ATTGATCCTGACATTGGAGG+TGG | + | chr8_3:6243841-6243860 | None:intergenic | 45.0% | |
| ATTGCACCAGGTACAGATCT+AGG | + | chr8_3:6243895-6243914 | None:intergenic | 45.0% | |
| GGATGCACCTTTATCCACTA+AGG | - | chr8_3:6244048-6244067 | Msa1272540:CDS | 45.0% | |
| TGGGGTTCAAAACCAGGAAG+TGG | - | chr8_3:6240833-6240852 | Msa1272540:three_prime_UTR | 50.0% | |
| GGTTCAAAACCAGGAAGTGG+CGG | - | chr8_3:6240836-6240855 | Msa1272540:three_prime_UTR | 50.0% | |
| !! | AGCTTCGTTTTGAGCTGTGG+CGG | + | chr8_3:6240864-6240883 | None:intergenic | 50.0% |
| TTGTTTCGAGAGCGAGTCGT+CGG | + | chr8_3:6240907-6240926 | None:intergenic | 50.0% | |
| AGCAGCACGTTTAGCGAGAT+TGG | + | chr8_3:6241056-6241075 | None:intergenic | 50.0% | |
| CTCAACCTCAGCCTCATAAG+AGG | - | chr8_3:6241098-6241117 | Msa1272540:CDS | 50.0% | |
| ACCTCAGCCTCATAAGAGGA+AGG | - | chr8_3:6241102-6241121 | Msa1272540:CDS | 50.0% | |
| ACCTTCCTCTTATGAGGCTG+AGG | + | chr8_3:6241106-6241125 | None:intergenic | 50.0% | |
| CAGTTAAGATTGGGAGGCCT+GGG | - | chr8_3:6241248-6241267 | Msa1272540:CDS | 50.0% | |
| CGGCCATACTCTGGATTACT+TGG | - | chr8_3:6242125-6242144 | Msa1272540:intron | 50.0% | |
| ! | GTTAACCCTCTGGTTCCTAG+GGG | + | chr8_3:6242160-6242179 | None:intergenic | 50.0% |
| ! | GTGTTAACCCTCTGGTTCCT+AGG | + | chr8_3:6242162-6242181 | None:intergenic | 50.0% |
| ACTACCGGAGTCTTCTCTCA+TGG | + | chr8_3:6242482-6242501 | None:intergenic | 50.0% | |
| GACTCCGGTAGTAGTGATAG+TGG | - | chr8_3:6242490-6242509 | Msa1272540:intron | 50.0% | |
| TGGCGGAGTCACATATTGGT+TGG | - | chr8_3:6242621-6242640 | Msa1272540:intron | 50.0% | |
| TTGGGTATGTGTGTGGAGAC+TGG | - | chr8_3:6242649-6242668 | Msa1272540:intron | 50.0% | |
| TTTGCGAGGTCTTCGATCTC+AGG | + | chr8_3:6243021-6243040 | None:intergenic | 50.0% | |
| TGTGCTTGGTACCTGAGATG+TGG | + | chr8_3:6243405-6243424 | None:intergenic | 50.0% | |
| CACCTATGGGAAATCCTCCA+CGG | - | chr8_3:6243809-6243828 | Msa1272540:intron | 50.0% | |
| ACCTATGGGAAATCCTCCAC+GGG | - | chr8_3:6243810-6243829 | Msa1272540:intron | 50.0% | |
| ATCCTGACATTGGAGGTGGA+GGG | + | chr8_3:6243837-6243856 | None:intergenic | 50.0% | |
| !! | GGCATTGATCCTGACATTGG+AGG | + | chr8_3:6243844-6243863 | None:intergenic | 50.0% |
| !! | GGTGGCATTGATCCTGACAT+TGG | + | chr8_3:6243847-6243866 | None:intergenic | 50.0% |
| AACGGTCCTAGATCTGTACC+TGG | - | chr8_3:6243886-6243905 | Msa1272540:CDS | 50.0% | |
| ATGGAGGTCTAGTCCCAATG+GGG | + | chr8_3:6243939-6243958 | None:intergenic | 50.0% | |
| GATGGAGGTCTAGTCCCAAT+GGG | + | chr8_3:6243940-6243959 | None:intergenic | 50.0% | |
| TGATGGAGGTCTAGTCCCAA+TGG | + | chr8_3:6243941-6243960 | None:intergenic | 50.0% | |
| ! | TGTTGGCCTGGAAAACCTTG+TGG | + | chr8_3:6243973-6243992 | None:intergenic | 50.0% |
| ! | TAGCTCTGCATTTGTTGGCC+TGG | + | chr8_3:6243985-6244004 | None:intergenic | 50.0% |
| AGGCCAACAAATGCAGAGCT+AGG | - | chr8_3:6243984-6244003 | Msa1272540:CDS | 50.0% | |
| GGCCAACAAATGCAGAGCTA+GGG | - | chr8_3:6243985-6244004 | Msa1272540:CDS | 50.0% | |
| !! | TGCCCTAGCTCTGCATTTGT+TGG | + | chr8_3:6243990-6244009 | None:intergenic | 50.0% |
| GCAGTTAAGATTGGGAGGCC+TGG | - | chr8_3:6241247-6241266 | Msa1272540:CDS | 55.0% | |
| TGCTTAGTCACACGGTACCC+AGG | + | chr8_3:6241268-6241287 | None:intergenic | 55.0% | |
| ! | TTTGGGTGTGTGTGGGCTGT+GGG | - | chr8_3:6242280-6242299 | Msa1272540:intron | 55.0% |
| ATCGATGTCTCGGCTTTGCG+AGG | + | chr8_3:6243035-6243054 | None:intergenic | 55.0% | |
| !! | TGTGGTTTGGTTGCCTCTGG+GGG | + | chr8_3:6243667-6243686 | None:intergenic | 55.0% |
| !! | CTGTGGTTTGGTTGCCTCTG+GGG | + | chr8_3:6243668-6243687 | None:intergenic | 55.0% |
| !! | GCTGTGGTTTGGTTGCCTCT+GGG | + | chr8_3:6243669-6243688 | None:intergenic | 55.0% |
| !! | TGTGGTGCCATTAGGTGCAG+AGG | + | chr8_3:6243698-6243717 | None:intergenic | 55.0% |
| ATAGGCCTTGGTGGAACACC+AGG | + | chr8_3:6243724-6243743 | None:intergenic | 55.0% | |
| ! | TAGTGGAGCTTGTGGTGGTG+GGG | + | chr8_3:6243749-6243768 | None:intergenic | 55.0% |
| ! | GTAGTGGAGCTTGTGGTGGT+GGG | + | chr8_3:6243750-6243769 | None:intergenic | 55.0% |
| AGGATTTCCCATAGGTGCGC+CGG | + | chr8_3:6243806-6243825 | None:intergenic | 55.0% | |
| TCCTGACATTGGAGGTGGAG+GGG | + | chr8_3:6243836-6243855 | None:intergenic | 55.0% | |
| GATCCTGACATTGGAGGTGG+AGG | + | chr8_3:6243838-6243857 | None:intergenic | 55.0% | |
| AATGCCACCACCACCTCCTA+TGG | - | chr8_3:6243858-6243877 | Msa1272540:intron | 55.0% | |
| TTTGCAGCCATAGGAGGTGG+TGG | + | chr8_3:6243868-6243887 | None:intergenic | 55.0% | |
| CCACCTCCTATGGCTGCAAA+CGG | - | chr8_3:6243868-6243887 | Msa1272540:CDS | 55.0% | |
| CTAGGACCGTTTGCAGCCAT+AGG | + | chr8_3:6243877-6243896 | None:intergenic | 55.0% | |
| TGGAGGTCTAGTCCCAATGG+GGG | + | chr8_3:6243938-6243957 | None:intergenic | 55.0% | |
| !! | TGTGGAGGTGGCATTGATGG+AGG | + | chr8_3:6243955-6243974 | None:intergenic | 55.0% |
| ! | CCTTGTGGAGGTGGCATTGA+TGG | + | chr8_3:6243958-6243977 | None:intergenic | 55.0% |
| CCATCAATGCCACCTCCACA+AGG | - | chr8_3:6243955-6243974 | Msa1272540:CDS | 55.0% | |
| CCTGGAAAACCTTGTGGAGG+TGG | + | chr8_3:6243967-6243986 | None:intergenic | 55.0% | |
| ! | CCACCTCCACAAGGTTTTCC+AGG | - | chr8_3:6243964-6243983 | Msa1272540:CDS | 55.0% |
| TGGCCTGGAAAACCTTGTGG+AGG | + | chr8_3:6243970-6243989 | None:intergenic | 55.0% | |
| CGAGTCGTCGGAGTCGTTCA+CGG | + | chr8_3:6240895-6240914 | None:intergenic | 60.0% | |
| ! | CGCTAAACGTGCTGCTCGTG+AGG | - | chr8_3:6241060-6241079 | Msa1272540:CDS | 60.0% |
| AGTCTCTCCCGGCCATACTC+TGG | - | chr8_3:6242116-6242135 | Msa1272540:intron | 60.0% | |
| ! | CTCTGGTTCCTAGGGGAAGG+GGG | + | chr8_3:6242153-6242172 | None:intergenic | 60.0% |
| ! | CCTCTGGTTCCTAGGGGAAG+GGG | + | chr8_3:6242154-6242173 | None:intergenic | 60.0% |
| ! | CCCTCTGGTTCCTAGGGGAA+GGG | + | chr8_3:6242155-6242174 | None:intergenic | 60.0% |
| CCCTTCCCCTAGGAACCAGA+GGG | - | chr8_3:6242152-6242171 | Msa1272540:intron | 60.0% | |
| ! | ACCCTCTGGTTCCTAGGGGA+AGG | + | chr8_3:6242156-6242175 | None:intergenic | 60.0% |
| ! | GTTTGGGTGTGTGTGGGCTG+TGG | - | chr8_3:6242279-6242298 | Msa1272540:intron | 60.0% |
| ! | TTTGGTTGCCTCTGGGGGCT+TGG | + | chr8_3:6243662-6243681 | None:intergenic | 60.0% |
| !! | GGCTGTGGTTTGGTTGCCTC+TGG | + | chr8_3:6243670-6243689 | None:intergenic | 60.0% |
| AGAGGCAGGTGGCTGTGGTT+TGG | + | chr8_3:6243680-6243699 | None:intergenic | 60.0% | |
| CCATTAGGTGCAGAGGCAGG+TGG | + | chr8_3:6243691-6243710 | None:intergenic | 60.0% | |
| CCACCTGCCTCTGCACCTAA+TGG | - | chr8_3:6243688-6243707 | Msa1272540:CDS | 60.0% | |
| ! | GTGCCATTAGGTGCAGAGGC+AGG | + | chr8_3:6243694-6243713 | None:intergenic | 60.0% |
| !! | CCAGGTGCTGTGGTGCCATT+AGG | + | chr8_3:6243706-6243725 | None:intergenic | 60.0% |
| CCTAATGGCACCACAGCACC+TGG | - | chr8_3:6243703-6243722 | Msa1272540:CDS | 60.0% | |
| ! | TGGTGGAACACCAGGTGCTG+TGG | + | chr8_3:6243716-6243735 | None:intergenic | 60.0% |
| CAGCACCTGGTGTTCCACCA+AGG | - | chr8_3:6243716-6243735 | Msa1272540:CDS | 60.0% | |
| !! | AGTGGAGCTTGTGGTGGTGG+GGG | + | chr8_3:6243748-6243767 | None:intergenic | 60.0% |
| !! | GGTAGTGGAGCTTGTGGTGG+TGG | + | chr8_3:6243751-6243770 | None:intergenic | 60.0% |
| !! | GGTGGTAGTGGAGCTTGTGG+TGG | + | chr8_3:6243754-6243773 | None:intergenic | 60.0% |
| !! | GGTGGTGGTAGTGGAGCTTG+TGG | + | chr8_3:6243757-6243776 | None:intergenic | 60.0% |
| CACCACCACCACCTCCACAA+GGG | - | chr8_3:6243773-6243792 | Msa1272540:intron | 60.0% | |
| GGATTTCCCATAGGTGCGCC+GGG | + | chr8_3:6243805-6243824 | None:intergenic | 60.0% | |
| GCCCGTGGAGGATTTCCCAT+AGG | + | chr8_3:6243814-6243833 | None:intergenic | 60.0% | |
| CCGTTTGCAGCCATAGGAGG+TGG | + | chr8_3:6243871-6243890 | None:intergenic | 60.0% | |
| GGACCGTTTGCAGCCATAGG+AGG | + | chr8_3:6243874-6243893 | None:intergenic | 60.0% | |
| GTCGTCGGAGTCGTTCACGG+CGG | + | chr8_3:6240892-6240911 | None:intergenic | 65.0% | |
| ACTTGGGTCCCCCTTCCCCT+AGG | - | chr8_3:6242142-6242161 | Msa1272540:intron | 65.0% | |
| CCCCTTCCCCTAGGAACCAG+AGG | - | chr8_3:6242151-6242170 | Msa1272540:intron | 65.0% | |
| !! | GCTTGTGGTGGTGGGGGCAT+AGG | + | chr8_3:6243742-6243761 | None:intergenic | 65.0% |
| !! | GGTGGTGGTGGTGGTGGTAG+TGG | + | chr8_3:6243766-6243785 | None:intergenic | 65.0% |
| !! | TGTGGAGGTGGTGGTGGTGG+TGG | + | chr8_3:6243772-6243791 | None:intergenic | 65.0% |
| !! | CCTTGTGGAGGTGGTGGTGG+TGG | + | chr8_3:6243775-6243794 | None:intergenic | 65.0% |
| CCACCACCACCACCTCCACA+AGG | - | chr8_3:6243772-6243791 | Msa1272540:intron | 65.0% | |
| ! | AGCCCTTGTGGAGGTGGTGG+TGG | + | chr8_3:6243778-6243797 | None:intergenic | 65.0% |
| GGTAGCCCTTGTGGAGGTGG+TGG | + | chr8_3:6243781-6243800 | None:intergenic | 65.0% | |
| GGAGGTAGCCCTTGTGGAGG+TGG | + | chr8_3:6243784-6243803 | None:intergenic | 65.0% | |
| CCTCCACAAGGGCTACCTCC+CGG | - | chr8_3:6243784-6243803 | Msa1272540:intron | 65.0% | |
| CTACCTCCCGGCGCACCTAT+GGG | - | chr8_3:6243796-6243815 | Msa1272540:intron | 65.0% | |
| TTTCCCATAGGTGCGCCGGG+AGG | + | chr8_3:6243802-6243821 | None:intergenic | 65.0% | |
| GCCCCTCCACCTCCAATGTC+AGG | - | chr8_3:6243832-6243851 | Msa1272540:intron | 65.0% | |
| ! | GCAGCCATAGGAGGTGGTGG+TGG | + | chr8_3:6243865-6243884 | None:intergenic | 65.0% |
| GGAAGAGGCGGCATTGCACC+AGG | + | chr8_3:6243907-6243926 | None:intergenic | 65.0% | |
| TTCCACCGCCAGCCCCCATT+GGG | - | chr8_3:6243923-6243942 | Msa1272540:CDS | 65.0% | |
| CTAGTCCCAATGGGGGCTGG+CGG | + | chr8_3:6243931-6243950 | None:intergenic | 65.0% | |
| GGTCTAGTCCCAATGGGGGC+TGG | + | chr8_3:6243934-6243953 | None:intergenic | 65.0% | |
| GGTGCAGAGGCAGGTGGCTG+TGG | + | chr8_3:6243685-6243704 | None:intergenic | 70.0% | |
| ! | GGTGGGGGCATAGGCCTTGG+TGG | + | chr8_3:6243733-6243752 | None:intergenic | 70.0% |
| !! | GGTGGTGGGGGCATAGGCCT+TGG | + | chr8_3:6243736-6243755 | None:intergenic | 70.0% |
| CCGGGAGGTAGCCCTTGTGG+AGG | + | chr8_3:6243787-6243806 | None:intergenic | 70.0% | |
| GCTACCTCCCGGCGCACCTA+TGG | - | chr8_3:6243795-6243814 | Msa1272540:intron | 70.0% | |
| ATTGGAGGTGGAGGGGCCCG+TGG | + | chr8_3:6243829-6243848 | None:intergenic | 70.0% | |
| ! | ATGGGGGCTGGCGGTGGAAG+AGG | + | chr8_3:6243922-6243941 | None:intergenic | 70.0% |
| CTTCCACCGCCAGCCCCCAT+TGG | - | chr8_3:6243922-6243941 | Msa1272540:CDS | 70.0% | |
| GTGGCGGCTCCGCCACTTCC+TGG | + | chr8_3:6240848-6240867 | None:intergenic | 75.0% | |
| GCGCCGGGAGGTAGCCCTTG+TGG | + | chr8_3:6243790-6243809 | None:intergenic | 75.0% | |
| ! | GGGGCTGGCGGTGGAAGAGG+CGG | + | chr8_3:6243919-6243938 | None:intergenic | 75.0% |
| ! | GTCCCAATGGGGGCTGGCGG+TGG | + | chr8_3:6243928-6243947 | None:intergenic | 75.0% |
| ! | GGAGGTGGAGGGGCCCGTGG+AGG | + | chr8_3:6243826-6243845 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 6240711 | 6244299 | 6240711 | ID=Msa1272540;Name=Msa1272540 |
| chr8_3 | mRNA | 6240711 | 6244299 | 6240711 | ID=Msa1272540-mRNA-1;Parent=Msa1272540;Name=Msa1272540-mRNA-1;_AED=0.08;_eAED=0.08;_QI=110|1|1|1|1|1|6|294|326 |
| chr8_3 | exon | 6240711 | 6241370 | 6240711 | ID=Msa1272540-mRNA-1:exon:2287;Parent=Msa1272540-mRNA-1 |
| chr8_3 | exon | 6241523 | 6241597 | 6241523 | ID=Msa1272540-mRNA-1:exon:2286;Parent=Msa1272540-mRNA-1 |
| chr8_3 | exon | 6241710 | 6241784 | 6241710 | ID=Msa1272540-mRNA-1:exon:2285;Parent=Msa1272540-mRNA-1 |
| chr8_3 | exon | 6241936 | 6242001 | 6241936 | ID=Msa1272540-mRNA-1:exon:2284;Parent=Msa1272540-mRNA-1 |
| chr8_3 | exon | 6243683 | 6243759 | 6243683 | ID=Msa1272540-mRNA-1:exon:2283;Parent=Msa1272540-mRNA-1 |
| chr8_3 | exon | 6243868 | 6244299 | 6243868 | ID=Msa1272540-mRNA-1:exon:2282;Parent=Msa1272540-mRNA-1 |
| chr8_3 | five_prime_UTR | 6244190 | 6244299 | 6244190 | ID=Msa1272540-mRNA-1:five_prime_utr;Parent=Msa1272540-mRNA-1 |
| chr8_3 | CDS | 6243868 | 6244189 | 6243868 | ID=Msa1272540-mRNA-1:cds;Parent=Msa1272540-mRNA-1 |
| chr8_3 | CDS | 6243683 | 6243759 | 6243683 | ID=Msa1272540-mRNA-1:cds;Parent=Msa1272540-mRNA-1 |
| chr8_3 | CDS | 6241936 | 6242001 | 6241936 | ID=Msa1272540-mRNA-1:cds;Parent=Msa1272540-mRNA-1 |
| chr8_3 | CDS | 6241710 | 6241784 | 6241710 | ID=Msa1272540-mRNA-1:cds;Parent=Msa1272540-mRNA-1 |
| chr8_3 | CDS | 6241523 | 6241597 | 6241523 | ID=Msa1272540-mRNA-1:cds;Parent=Msa1272540-mRNA-1 |
| chr8_3 | CDS | 6241005 | 6241370 | 6241005 | ID=Msa1272540-mRNA-1:cds;Parent=Msa1272540-mRNA-1 |
| chr8_3 | three_prime_UTR | 6240711 | 6241004 | 6240711 | ID=Msa1272540-mRNA-1:three_prime_utr;Parent=Msa1272540-mRNA-1 |
| Gene Sequence |
| Protein sequence |
