Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1274410 | sp|Q9FFF6|JOX2_ARATH | 24.113 | 282 | 194 | 7 | 70 | 348 | 63 | 327 | 3.97e-13 | 73.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1274410 | A0A396GK47 | 94.226 | 381 | 20 | 1 | 1 | 381 | 1 | 379 | 0.0 | 743 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1104110 | Msa1274410 | 0.805293 | 1.431718e-49 | -8.615850e-47 |
| Msa1147700 | Msa1274410 | 0.809616 | 1.732913e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1274410 | MtrunA17_Chr8g0340641 | 94.226 | 381 | 20 | 1 | 1 | 381 | 1 | 379 | 0.0 | 743 |
| Msa1274410 | MtrunA17_Chr7g0242551 | 25.899 | 278 | 183 | 7 | 83 | 354 | 71 | 331 | 6.35e-15 | 75.5 |
| Msa1274410 | MtrunA17_Chr4g0006371 | 25.333 | 300 | 196 | 9 | 65 | 354 | 58 | 339 | 2.59e-12 | 67.8 |
| Msa1274410 | MtrunA17_Chr3g0125201 | 23.929 | 280 | 176 | 8 | 70 | 341 | 4 | 254 | 2.07e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1274410 | AT1G79760.2 | 34.911 | 338 | 138 | 14 | 8 | 340 | 17 | 277 | 1.76e-46 | 162 |
| Msa1274410 | AT1G79760.1 | 34.731 | 334 | 137 | 14 | 11 | 340 | 1 | 257 | 5.44e-46 | 160 |
| Msa1274410 | AT2G38500.1 | 26.910 | 301 | 182 | 9 | 29 | 325 | 28 | 294 | 1.30e-17 | 83.6 |
| Msa1274410 | AT5G05600.1 | 24.113 | 282 | 194 | 7 | 70 | 348 | 63 | 327 | 4.03e-14 | 73.6 |
Find 115 sgRNAs with CRISPR-Local
Find 195 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGAATTTCTCACCGAGTTTC+TGG | 0.068021 | 8_3:+8173262 | Msa1274410:CDS |
| ATGGCAACTACTATGTATTT+TGG | 0.174246 | 8_3:-8176559 | Msa1274420:intron |
| CATATTTGTTTGAAGTTTCT+TGG | 0.181857 | 8_3:-8176016 | None:intergenic |
| TTTCGTCATTGCTCTGTTTC+GGG | 0.228612 | 8_3:-8173331 | None:intergenic |
| GAAGGTGGCTGAGAAAATTT+TGG | 0.236901 | 8_3:+8175338 | Msa1274410:CDS |
| AGTTGAAATTGGAGGGAATT+TGG | 0.246627 | 8_3:+8173669 | Msa1274410:CDS |
| ATTGGAAAGGCAATATTTAA+AGG | 0.263472 | 8_3:+8175943 | Msa1274410:CDS |
| AGTTGAATGAAGAATTTATT+TGG | 0.269600 | 8_3:+8173624 | Msa1274410:CDS |
| CGGAAATCAACGGTGGTTTC+CGG | 0.284712 | 8_3:-8173185 | None:intergenic |
| ATTACTAGGGCACCTTGTTC+AGG | 0.285696 | 8_3:-8175624 | None:intergenic |
| GTTTCGTCATTGCTCTGTTT+CGG | 0.288438 | 8_3:-8173332 | None:intergenic |
| TGAAGAGTTGAAGTTGAAAT+TGG | 0.298562 | 8_3:+8173658 | Msa1274410:CDS |
| TCATGCTTACTCGGATGATT+TGG | 0.299442 | 8_3:-8176649 | Msa1274420:CDS |
| AATTCGAAATACCTAAAATT+AGG | 0.305210 | 8_3:-8173704 | None:intergenic |
| GGGCATTACAAGGATGTAAT+TGG | 0.306906 | 8_3:+8175925 | Msa1274410:CDS |
| GATCTCCAGCAGTGATTACT+AGG | 0.312300 | 8_3:-8175638 | None:intergenic |
| TTGCTGCACATACTGAGATT+TGG | 0.313362 | 8_3:+8176380 | Msa1274410:three_prime_UTR |
| CATATAATATTTATTTCATT+AGG | 0.319188 | 8_3:-8176594 | Msa1274420:CDS |
| ACTGGAAAGTCTATAGTTAA+AGG | 0.319842 | 8_3:+8176419 | Msa1274410:three_prime_UTR |
| TGCTGCACATACTGAGATTT+GGG | 0.320728 | 8_3:+8176381 | Msa1274410:three_prime_UTR |
| CATTAGGTTCAAAGGTTTGA+TGG | 0.330434 | 8_3:-8176578 | Msa1274420:intron |
| CAAGAAACTTCAAACAAATA+TGG | 0.338970 | 8_3:+8176017 | Msa1274410:CDS |
| CAATACCAACTTCCTTGATT+AGG | 0.349218 | 8_3:-8176355 | Msa1274420:intron |
| AGCATCATCAAGATATTAAT+AGG | 0.354575 | 8_3:+8175454 | Msa1274410:CDS |
| ATGTGATTAGAATGCTGATT+AGG | 0.357036 | 8_3:+8175508 | Msa1274410:CDS |
| GCAAGTGATGGTGATATAAT+TGG | 0.358719 | 8_3:+8175393 | Msa1274410:CDS |
| GCTTGTTGGCCAAGTGAAAT+AGG | 0.379497 | 8_3:-8176045 | None:intergenic |
| TGTGATTAGAATGCTGATTA+GGG | 0.384993 | 8_3:+8175509 | Msa1274410:CDS |
| AGATCTCATTGACGTTGTTT+CGG | 0.389518 | 8_3:+8173400 | Msa1274410:CDS |
| ACTTGGCCAACAAGCCATCT+TGG | 0.392357 | 8_3:+8176053 | Msa1274410:CDS |
| TTGTCCGGTAATACTAGATC+TGG | 0.395672 | 8_3:-8173302 | None:intergenic |
| GCTGCTGCAGTGGAGGTTGC+CGG | 0.395912 | 8_3:+8173485 | Msa1274410:CDS |
| TTGAAATTGCAGCAAGAAGA+TGG | 0.398906 | 8_3:+8175293 | Msa1274410:intron |
| TTATCATATAATTGTTTAAG+TGG | 0.400439 | 8_3:-8176206 | Msa1274420:intron |
| TCGGAATCTATAGCTAGGTT+TGG | 0.407064 | 8_3:+8173419 | Msa1274410:CDS |
| TCTATAACTTACTACGTGGT+TGG | 0.416323 | 8_3:-8176315 | Msa1274420:intron |
| ATATTAATAGGAATGATCAT+TGG | 0.434233 | 8_3:+8175466 | Msa1274410:CDS |
| TGACTAGTTTATCCTAATCA+AGG | 0.437981 | 8_3:+8176343 | Msa1274410:three_prime_UTR |
| GTAGTCTTTGAGATTGTTGT+GGG | 0.441896 | 8_3:-8176286 | Msa1274420:intron |
| AGTTCCAGATCTAGTATTAC+CGG | 0.444942 | 8_3:+8173298 | Msa1274410:CDS |
| GGAATATTTACGGTGCCGTC+GGG | 0.453618 | 8_3:+8173509 | Msa1274410:CDS |
| AAGAGAAGACAACATTTCAA+TGG | 0.463032 | 8_3:+8175969 | Msa1274410:CDS |
| GTTCAAAATTACAGCCAAGA+TGG | 0.463235 | 8_3:-8176067 | None:intergenic |
| GGTTGCCGGAGGAATATTTA+CGG | 0.463294 | 8_3:+8173499 | Msa1274410:CDS |
| TTTGAAAGCAACGATGAGAA+TGG | 0.474113 | 8_3:-8173087 | None:intergenic |
| TTACAGCCAAGATGGCTTGT+TGG | 0.474725 | 8_3:-8176059 | None:intergenic |
| TATTAATAGGAATGATCATT+GGG | 0.475240 | 8_3:+8175467 | Msa1274410:CDS |
| TGGTAAATTAAATGAGTACA+TGG | 0.481095 | 8_3:-8176539 | Msa1274420:intron |
| ACTGCAGCAGCCACAATTCG+CGG | 0.481741 | 8_3:-8173473 | None:intergenic |
| TGATAGTGTGTTTGTTGAAT+CGG | 0.483877 | 8_3:-8173016 | None:intergenic |
| ATCAACATTGTCCTCTGTAA+AGG | 0.486423 | 8_3:+8172926 | None:intergenic |
| ATTGGTCATAGAAATGAAGT+TGG | 0.490467 | 8_3:+8175411 | Msa1274410:CDS |
| GGCTATAGGCATTGAGTGGA+GGG | 0.491223 | 8_3:+8175905 | Msa1274410:intron |
| GAGATCGCCGGAGAAACCTC+GGG | 0.491548 | 8_3:+8173550 | Msa1274410:CDS |
| TTGGAGGGAATTTGGCCTGT+TGG | 0.491974 | 8_3:+8173677 | Msa1274410:CDS |
| ATGTTTACTCAAAGAAAAGT+TGG | 0.492603 | 8_3:+8175589 | Msa1274410:CDS |
| ATATTAGAACGTGGTACATA+AGG | 0.493967 | 8_3:-8176089 | None:intergenic |
| ATTTATTTCATTAGGTTCAA+AGG | 0.496537 | 8_3:-8176586 | Msa1274420:intron |
| TTACTAGGGCACCTTGTTCA+GGG | 0.500069 | 8_3:-8175623 | None:intergenic |
| GTGGTTTCCGGCATGGTTTG+CGG | 0.500737 | 8_3:-8173173 | None:intergenic |
| CGACCGGAGGCTACCGGTGA+TGG | 0.501289 | 8_3:-8173218 | None:intergenic |
| TGCTTTCAGCTTATTAACCA+TGG | 0.504255 | 8_3:+8173443 | Msa1274410:CDS |
| TTTATCCTAATCAAGGAAGT+TGG | 0.507700 | 8_3:+8176350 | Msa1274410:three_prime_UTR |
| TTGTCTTTCTGCCCTGAACA+AGG | 0.507702 | 8_3:+8175612 | Msa1274410:CDS |
| TCAAAACCCCGAGGTTTCTC+CGG | 0.510007 | 8_3:-8173557 | None:intergenic |
| TGGAATATCGCCGCGAATTG+TGG | 0.513817 | 8_3:+8173463 | Msa1274410:CDS |
| CCGTGCACCGCCGCCATCAC+CGG | 0.514670 | 8_3:+8173205 | Msa1274410:CDS |
| CCGGTGATGGCGGCGGTGCA+CGG | 0.517525 | 8_3:-8173205 | None:intergenic |
| TGAAGTAGAAGAAGAAGAAG+AGG | 0.519274 | 8_3:+8173592 | Msa1274410:CDS |
| TGTAGTCTTTGAGATTGTTG+TGG | 0.521495 | 8_3:-8176287 | Msa1274420:intron |
| ATCAACGGTGGTTTCCGGCA+TGG | 0.522750 | 8_3:-8173180 | None:intergenic |
| GCGAATTGTGGCTGCTGCAG+TGG | 0.524178 | 8_3:+8173475 | Msa1274410:CDS |
| CAATTCGCGGCGATATTCCA+TGG | 0.533113 | 8_3:-8173460 | None:intergenic |
| GGGAACTATAAGCAAGTGAC+TGG | 0.533650 | 8_3:+8176401 | Msa1274410:three_prime_UTR |
| TTGGTCATAGAAATGAAGTT+GGG | 0.535395 | 8_3:+8175412 | Msa1274410:CDS |
| GAGTTGAAGTTGAAATTGGA+GGG | 0.535578 | 8_3:+8173662 | Msa1274410:CDS |
| GGTGCCCTAGTAATCACTGC+TGG | 0.539493 | 8_3:+8175633 | Msa1274410:CDS |
| TGTTTCGGGAAAATCTTGTC+CGG | 0.539842 | 8_3:-8173317 | None:intergenic |
| TTGTTTCGGAATCTATAGCT+AGG | 0.540237 | 8_3:+8173414 | Msa1274410:CDS |
| CTAAAATTAGGATATCCAAC+AGG | 0.541512 | 8_3:-8173692 | None:intergenic |
| AGAGTTGAAGTTGAAATTGG+AGG | 0.544255 | 8_3:+8173661 | Msa1274410:CDS |
| CACTGCTGGAGATCAAATCC+AGG | 0.545215 | 8_3:+8175647 | Msa1274410:CDS |
| TTATGTTTGCATGTGTGCGA+TGG | 0.546393 | 8_3:+8175552 | Msa1274410:CDS |
| CGAGATCGCCGGAGAAACCT+CGG | 0.547961 | 8_3:+8173549 | Msa1274410:CDS |
| AGGAATATTTACGGTGCCGT+CGG | 0.549924 | 8_3:+8173508 | Msa1274410:CDS |
| GAGGCTACCGGTGATGGCGG+CGG | 0.552842 | 8_3:-8173212 | None:intergenic |
| TGGCTATAGGCATTGAGTGG+AGG | 0.560050 | 8_3:+8175904 | Msa1274410:intron |
| AGTGAAACGAAATCGATCTT+CGG | 0.565003 | 8_3:-8173359 | None:intergenic |
| CGGCACCGTAAATATTCCTC+CGG | 0.565215 | 8_3:-8173504 | None:intergenic |
| TCTACAATCACGTGTGGAGA+AGG | 0.568223 | 8_3:+8175320 | Msa1274410:CDS |
| TGAACAGAATCATGCTTACT+CGG | 0.569326 | 8_3:-8176658 | Msa1274420:CDS |
| ATGGAAAGACCTATTTCACT+TGG | 0.570120 | 8_3:+8176036 | Msa1274410:CDS |
| GATTCTGTTCACATTTCAAG+AGG | 0.573329 | 8_3:+8176670 | Msa1274410:three_prime_UTR |
| ATTGAGTGGAGGGCATTACA+AGG | 0.581852 | 8_3:+8175915 | Msa1274410:CDS |
| TTACAAGGATGTAATTGGAA+AGG | 0.584583 | 8_3:+8175930 | Msa1274410:CDS |
| AATTGTGGCTGCTGCAGTGG+AGG | 0.593450 | 8_3:+8173478 | Msa1274410:CDS |
| ATTAACACCGCAAACCATGC+CGG | 0.596152 | 8_3:+8173166 | Msa1274410:CDS |
| AGATGCTGTGACGAGATCGC+CGG | 0.604287 | 8_3:+8173538 | Msa1274410:CDS |
| GCTGCAGTGGAGGTTGCCGG+AGG | 0.607964 | 8_3:+8173488 | Msa1274410:CDS |
| CGGCGGTGCACGGAAATCAA+CGG | 0.614742 | 8_3:-8173195 | None:intergenic |
| TGTTACCGTTGATCTACGAC+CGG | 0.620887 | 8_3:-8173234 | None:intergenic |
| ATCTCCAGCAGTGATTACTA+GGG | 0.624399 | 8_3:-8175637 | None:intergenic |
| ACAATCACGTGTGGAGAAGG+TGG | 0.625775 | 8_3:+8175323 | Msa1274410:CDS |
| GCTTGGCTATAGGCATTGAG+TGG | 0.637199 | 8_3:+8175901 | Msa1274410:intron |
| AAGCGAAGTTTCCAGAAACT+CGG | 0.638861 | 8_3:-8173273 | None:intergenic |
| AGCCTCCGGTCGTAGATCAA+CGG | 0.648849 | 8_3:+8173229 | Msa1274410:CDS |
| GGAAACTCTACAATCACGTG+TGG | 0.665148 | 8_3:+8175314 | Msa1274410:CDS |
| GAAACGAAATCGATCTTCGG+CGG | 0.683182 | 8_3:-8173356 | None:intergenic |
| TAAAGACAAATATTAGAACG+TGG | 0.700039 | 8_3:-8176098 | None:intergenic |
| ACAGCATCTCTCATTCCCGA+CGG | 0.714149 | 8_3:-8173524 | None:intergenic |
| CGGTGCACGGAAATCAACGG+TGG | 0.737046 | 8_3:-8173192 | None:intergenic |
| GTGATTAGAATGCTGATTAG+GGG | 0.740101 | 8_3:+8175510 | Msa1274410:CDS |
| TGATACTCTTCAAAACCCCG+AGG | 0.741463 | 8_3:-8173566 | None:intergenic |
| AGATCGCCGGAGAAACCTCG+GGG | 0.744747 | 8_3:+8173551 | Msa1274410:CDS |
| TTTATCTATAACTTACTACG+TGG | 0.746580 | 8_3:-8176319 | Msa1274420:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TACAATATATTTTAACAATT+CGG | - | chr8_3:8174053-8174072 | None:intergenic | 10.0% |
| !!! | AATTAGATTTTTTTTTTGAA+AGG | + | chr8_3:8174218-8174237 | Msa1274410:intron | 10.0% |
| !! | CATATAATATTTATTTCATT+AGG | - | chr8_3:8176597-8176616 | Msa1274420:CDS | 10.0% |
| !!! | TGAAAGAATATGTATTTTAT+AGG | + | chr8_3:8174691-8174710 | Msa1274410:intron | 15.0% |
| !!! | ATGTTTTAAAGTAGAAAAAT+TGG | + | chr8_3:8174895-8174914 | Msa1274410:intron | 15.0% |
| !!! | GTTTATTTTGTATATATTGA+TGG | + | chr8_3:8175212-8175231 | Msa1274410:intron | 15.0% |
| !! | TTATCATATAATTGTTTAAG+TGG | - | chr8_3:8176209-8176228 | Msa1274420:intron | 15.0% |
| !! | AGTTGAATGAAGAATTTATT+TGG | + | chr8_3:8173624-8173643 | Msa1274410:CDS | 20.0% |
| !! | AATTCGAAATACCTAAAATT+AGG | - | chr8_3:8173707-8173726 | None:intergenic | 20.0% |
| !!! | AATCATAAGTAGTTTGTATT+AGG | - | chr8_3:8174152-8174171 | None:intergenic | 20.0% |
| !!! | TATATAATATTGGGTTTTGA+CGG | + | chr8_3:8174308-8174327 | Msa1274410:intron | 20.0% |
| !!! | ATTTTTTTCTTCGTTTTTTG+AGG | - | chr8_3:8175166-8175185 | None:intergenic | 20.0% |
| !! | AAAACGAAGAAAAAAATAGT+AGG | + | chr8_3:8175169-8175188 | Msa1274410:intron | 20.0% |
| !! | AAGAAAAAAATAGTAGGTAT+TGG | + | chr8_3:8175175-8175194 | Msa1274410:intron | 20.0% |
| !! | ATATTAATAGGAATGATCAT+TGG | + | chr8_3:8175466-8175485 | Msa1274410:CDS | 20.0% |
| !! | TATTAATAGGAATGATCATT+GGG | + | chr8_3:8175467-8175486 | Msa1274410:CDS | 20.0% |
| !!! | AGATTATGCATAAGATTTTA+AGG | - | chr8_3:8176258-8176277 | Msa1274420:intron | 20.0% |
| !! | ATTTATTTCATTAGGTTCAA+AGG | - | chr8_3:8176589-8176608 | Msa1274420:CDS | 20.0% |
| ! | AATCAAAAAGCAAAACAGAA+AGG | + | chr8_3:8172959-8172978 | Msa1274410:five_prime_UTR | 25.0% |
| ! | TTGAGCTTCAAAGTTTATTA+AGG | - | chr8_3:8173939-8173958 | None:intergenic | 25.0% |
| !! | TTTAGATGAGTTGAATTTCA+AGG | - | chr8_3:8174011-8174030 | None:intergenic | 25.0% |
| !!! | ATATAATATTGGGTTTTGAC+GGG | + | chr8_3:8174309-8174328 | Msa1274410:intron | 25.0% |
| ! | CTCAAAATCTTTATTATGCA+AGG | - | chr8_3:8174853-8174872 | None:intergenic | 25.0% |
| !! | CTTGCATAATAAAGATTTTG+AGG | + | chr8_3:8174851-8174870 | Msa1274410:intron | 25.0% |
| !! | AACAATCTATCTTTACGTTT+TGG | + | chr8_3:8175023-8175042 | Msa1274410:intron | 25.0% |
| ! | ATGTACGTATCTAAATTTGT+CGG | - | chr8_3:8175089-8175108 | None:intergenic | 25.0% |
| ! | AAAAAGAAATTAGCAAGTGA+TGG | + | chr8_3:8175381-8175400 | Msa1274410:CDS | 25.0% |
| ! | AGCATCATCAAGATATTAAT+AGG | + | chr8_3:8175454-8175473 | Msa1274410:CDS | 25.0% |
| ! | ATGTTTACTCAAAGAAAAGT+TGG | + | chr8_3:8175589-8175608 | Msa1274410:CDS | 25.0% |
| ! | AGCAAAAATGTAAAATTACC+TGG | - | chr8_3:8175668-8175687 | None:intergenic | 25.0% |
| !! | TGAAGGTATAGTCAAAATAT+TGG | - | chr8_3:8175815-8175834 | None:intergenic | 25.0% |
| ! | ATTGGAAAGGCAATATTTAA+AGG | + | chr8_3:8175943-8175962 | Msa1274410:CDS | 25.0% |
| !! | CATATTTGTTTGAAGTTTCT+TGG | - | chr8_3:8176019-8176038 | None:intergenic | 25.0% |
| ! | CAAGAAACTTCAAACAAATA+TGG | + | chr8_3:8176017-8176036 | Msa1274410:CDS | 25.0% |
| ! | TAAAGACAAATATTAGAACG+TGG | - | chr8_3:8176101-8176120 | None:intergenic | 25.0% |
| ! | TTTATCTATAACTTACTACG+TGG | - | chr8_3:8176322-8176341 | Msa1274420:intron | 25.0% |
| ! | TGGTAAATTAAATGAGTACA+TGG | - | chr8_3:8176542-8176561 | Msa1274420:intron | 25.0% |
| ! | ATTTGGACTTCATTAAAAAG+TGG | - | chr8_3:8176635-8176654 | Msa1274420:CDS | 25.0% |
| ! | TGATAGTGTGTTTGTTGAAT+CGG | - | chr8_3:8173019-8173038 | None:intergenic | 30.0% |
| TGAAGAGTTGAAGTTGAAAT+TGG | + | chr8_3:8173658-8173677 | Msa1274410:CDS | 30.0% | |
| CTAAAATTAGGATATCCAAC+AGG | - | chr8_3:8173695-8173714 | None:intergenic | 30.0% | |
| ! | CTGTTGGATATCCTAATTTT+AGG | + | chr8_3:8173693-8173712 | Msa1274410:CDS | 30.0% |
| TGATTCTCGTAAATCAAACT+CGG | - | chr8_3:8173880-8173899 | None:intergenic | 30.0% | |
| TACAATTACACACACTCATT+TGG | + | chr8_3:8174413-8174432 | Msa1274410:intron | 30.0% | |
| ACAATTACACACACTCATTT+GGG | + | chr8_3:8174414-8174433 | Msa1274410:intron | 30.0% | |
| ! | AGTTTTTATCAAGATTGACG+TGG | + | chr8_3:8174566-8174585 | Msa1274410:intron | 30.0% |
| ! | GTTTTTATCAAGATTGACGT+GGG | + | chr8_3:8174567-8174586 | Msa1274410:intron | 30.0% |
| ! | TAAGAGTGTGAGATATAAAG+TGG | + | chr8_3:8174632-8174651 | Msa1274410:intron | 30.0% |
| AATTATGTACCTTGCATTTG+TGG | + | chr8_3:8174668-8174687 | Msa1274410:intron | 30.0% | |
| !!! | GTATTTTATAGGCACTGATA+AGG | + | chr8_3:8174702-8174721 | Msa1274410:intron | 30.0% |
| TGTACGTATCTAAATTTGTC+GGG | - | chr8_3:8175088-8175107 | None:intergenic | 30.0% | |
| ATTGGTCATAGAAATGAAGT+TGG | + | chr8_3:8175411-8175430 | Msa1274410:CDS | 30.0% | |
| TTGGTCATAGAAATGAAGTT+GGG | + | chr8_3:8175412-8175431 | Msa1274410:CDS | 30.0% | |
| ! | ATGTGATTAGAATGCTGATT+AGG | + | chr8_3:8175508-8175527 | Msa1274410:CDS | 30.0% |
| ! | TGTGATTAGAATGCTGATTA+GGG | + | chr8_3:8175509-8175528 | Msa1274410:CDS | 30.0% |
| TTAACGAGTTTGATATTGCT+TGG | + | chr8_3:8175884-8175903 | Msa1274410:intron | 30.0% | |
| TTACAAGGATGTAATTGGAA+AGG | + | chr8_3:8175930-8175949 | Msa1274410:CDS | 30.0% | |
| AAGAGAAGACAACATTTCAA+TGG | + | chr8_3:8175969-8175988 | Msa1274410:CDS | 30.0% | |
| ATATTAGAACGTGGTACATA+AGG | - | chr8_3:8176092-8176111 | None:intergenic | 30.0% | |
| !!! | TAAGATTTTAAGGTGCAAAC+AGG | - | chr8_3:8176248-8176267 | Msa1274420:intron | 30.0% |
| !! | TGACTAGTTTATCCTAATCA+AGG | + | chr8_3:8176343-8176362 | Msa1274410:three_prime_UTR | 30.0% |
| TTTATCCTAATCAAGGAAGT+TGG | + | chr8_3:8176350-8176369 | Msa1274410:three_prime_UTR | 30.0% | |
| ACTGGAAAGTCTATAGTTAA+AGG | + | chr8_3:8176419-8176438 | Msa1274410:three_prime_UTR | 30.0% | |
| ! | ATGGCAACTACTATGTATTT+TGG | - | chr8_3:8176562-8176581 | Msa1274420:intron | 30.0% |
| TTCATTAAAAAGTGGACAGT+GGG | - | chr8_3:8176627-8176646 | Msa1274420:CDS | 30.0% | |
| TTTGAAAGCAACGATGAGAA+TGG | - | chr8_3:8173090-8173109 | None:intergenic | 35.0% | |
| AGTTCCAGATCTAGTATTAC+CGG | + | chr8_3:8173298-8173317 | Msa1274410:CDS | 35.0% | |
| AGTGAAACGAAATCGATCTT+CGG | - | chr8_3:8173362-8173381 | None:intergenic | 35.0% | |
| AGATCTCATTGACGTTGTTT+CGG | + | chr8_3:8173400-8173419 | Msa1274410:CDS | 35.0% | |
| TTGTTTCGGAATCTATAGCT+AGG | + | chr8_3:8173414-8173433 | Msa1274410:CDS | 35.0% | |
| TGCTTTCAGCTTATTAACCA+TGG | + | chr8_3:8173443-8173462 | Msa1274410:CDS | 35.0% | |
| TGAAGTAGAAGAAGAAGAAG+AGG | + | chr8_3:8173592-8173611 | Msa1274410:CDS | 35.0% | |
| AGAGTTGAAGTTGAAATTGG+AGG | + | chr8_3:8173661-8173680 | Msa1274410:CDS | 35.0% | |
| GAGTTGAAGTTGAAATTGGA+GGG | + | chr8_3:8173662-8173681 | Msa1274410:CDS | 35.0% | |
| AGTTGAAATTGGAGGGAATT+TGG | + | chr8_3:8173669-8173688 | Msa1274410:CDS | 35.0% | |
| TTAACTTACGTCCAAAGTTG+TGG | + | chr8_3:8173845-8173864 | Msa1274410:intron | 35.0% | |
| TGAATTTCAAGGTTTCACCA+AGG | - | chr8_3:8174000-8174019 | None:intergenic | 35.0% | |
| ATTCTTTCACCACAAATGCA+AGG | - | chr8_3:8174680-8174699 | None:intergenic | 35.0% | |
| CTAAAACACAAGCTCAATCA+TGG | - | chr8_3:8174830-8174849 | None:intergenic | 35.0% | |
| TTGAAATTGCAGCAAGAAGA+TGG | + | chr8_3:8175293-8175312 | Msa1274410:intron | 35.0% | |
| ! | GCAAGTGATGGTGATATAAT+TGG | + | chr8_3:8175393-8175412 | Msa1274410:CDS | 35.0% |
| ! | GTGATTAGAATGCTGATTAG+GGG | + | chr8_3:8175510-8175529 | Msa1274410:CDS | 35.0% |
| AAAAAACTCCAACTCCACTT+TGG | + | chr8_3:8175727-8175746 | Msa1274410:intron | 35.0% | |
| ATTTCAAACCAAAGTGGAGT+TGG | - | chr8_3:8175738-8175757 | None:intergenic | 35.0% | |
| GTTCGTATTTCAAACCAAAG+TGG | - | chr8_3:8175744-8175763 | None:intergenic | 35.0% | |
| !! | TTTTGCTGTCATGAGATTGA+AGG | - | chr8_3:8175832-8175851 | None:intergenic | 35.0% |
| TCAAACTCGTTAAGTGAGAT+GGG | - | chr8_3:8175877-8175896 | None:intergenic | 35.0% | |
| ATCAAACTCGTTAAGTGAGA+TGG | - | chr8_3:8175878-8175897 | None:intergenic | 35.0% | |
| GTTTGATATTGCTTGGCTAT+AGG | + | chr8_3:8175891-8175910 | Msa1274410:intron | 35.0% | |
| ! | TGAAGTTTCTTGGCATTTTG+AGG | - | chr8_3:8176009-8176028 | None:intergenic | 35.0% |
| ATGGAAAGACCTATTTCACT+TGG | + | chr8_3:8176036-8176055 | Msa1274410:CDS | 35.0% | |
| GTTCAAAATTACAGCCAAGA+TGG | - | chr8_3:8176070-8176089 | None:intergenic | 35.0% | |
| !! | GTAGTCTTTGAGATTGTTGT+GGG | - | chr8_3:8176289-8176308 | Msa1274420:intron | 35.0% |
| !! | TGTAGTCTTTGAGATTGTTG+TGG | - | chr8_3:8176290-8176309 | Msa1274420:intron | 35.0% |
| TCTATAACTTACTACGTGGT+TGG | - | chr8_3:8176318-8176337 | Msa1274420:intron | 35.0% | |
| CAATACCAACTTCCTTGATT+AGG | - | chr8_3:8176358-8176377 | Msa1274420:intron | 35.0% | |
| CATTAGGTTCAAAGGTTTGA+TGG | - | chr8_3:8176581-8176600 | Msa1274420:intron | 35.0% | |
| CTTCATTAAAAAGTGGACAG+TGG | - | chr8_3:8176628-8176647 | Msa1274420:CDS | 35.0% | |
| TGAACAGAATCATGCTTACT+CGG | - | chr8_3:8176661-8176680 | Msa1274420:CDS | 35.0% | |
| GATTCTGTTCACATTTCAAG+AGG | + | chr8_3:8176670-8176689 | Msa1274410:three_prime_UTR | 35.0% | |
| ! | TGCTTCGTTTTCCTTTACAG+AGG | - | chr8_3:8172940-8172959 | None:intergenic | 40.0% |
| AAGCGAAGTTTCCAGAAACT+CGG | - | chr8_3:8173276-8173295 | None:intergenic | 40.0% | |
| TTGTCCGGTAATACTAGATC+TGG | - | chr8_3:8173305-8173324 | None:intergenic | 40.0% | |
| TGTTTCGGGAAAATCTTGTC+CGG | - | chr8_3:8173320-8173339 | None:intergenic | 40.0% | |
| TTTCGTCATTGCTCTGTTTC+GGG | - | chr8_3:8173334-8173353 | None:intergenic | 40.0% | |
| GTTTCGTCATTGCTCTGTTT+CGG | - | chr8_3:8173335-8173354 | None:intergenic | 40.0% | |
| TCGGAATCTATAGCTAGGTT+TGG | + | chr8_3:8173419-8173438 | Msa1274410:CDS | 40.0% | |
| AGTAGAAGAAGAAGAAGAGG+AGG | + | chr8_3:8173595-8173614 | Msa1274410:CDS | 40.0% | |
| GTAGAAGAAGAAGAAGAGGA+GGG | + | chr8_3:8173596-8173615 | Msa1274410:CDS | 40.0% | |
| GGAAGTTGAATCCACAACTT+TGG | - | chr8_3:8173859-8173878 | None:intergenic | 40.0% | |
| ACACACACTCATTTGGGAAA+TGG | + | chr8_3:8174420-8174439 | Msa1274410:intron | 40.0% | |
| CTTACGCGATCAAGAAGAAT+TGG | + | chr8_3:8174531-8174550 | Msa1274410:intron | 40.0% | |
| ! | GAAGGTGGCTGAGAAAATTT+TGG | + | chr8_3:8175338-8175357 | Msa1274410:CDS | 40.0% |
| TTATGTTTGCATGTGTGCGA+TGG | + | chr8_3:8175552-8175571 | Msa1274410:CDS | 40.0% | |
| ATCTCCAGCAGTGATTACTA+GGG | - | chr8_3:8175640-8175659 | None:intergenic | 40.0% | |
| ATTGGCACACTAGCATTAAG+AGG | - | chr8_3:8175797-8175816 | None:intergenic | 40.0% | |
| GGGCATTACAAGGATGTAAT+TGG | + | chr8_3:8175925-8175944 | Msa1274410:CDS | 40.0% | |
| !! | TGGCATTTTGAGGAGAATAG+AGG | - | chr8_3:8175999-8176018 | None:intergenic | 40.0% |
| TTGCTGCACATACTGAGATT+TGG | + | chr8_3:8176380-8176399 | Msa1274410:three_prime_UTR | 40.0% | |
| TGCTGCACATACTGAGATTT+GGG | + | chr8_3:8176381-8176400 | Msa1274410:three_prime_UTR | 40.0% | |
| TCATGCTTACTCGGATGATT+TGG | - | chr8_3:8176652-8176671 | Msa1274420:CDS | 40.0% | |
| ATTAACACCGCAAACCATGC+CGG | + | chr8_3:8173166-8173185 | Msa1274410:CDS | 45.0% | |
| TGTTACCGTTGATCTACGAC+CGG | - | chr8_3:8173237-8173256 | None:intergenic | 45.0% | |
| CGAATTTCTCACCGAGTTTC+TGG | + | chr8_3:8173262-8173281 | Msa1274410:CDS | 45.0% | |
| GAAACGAAATCGATCTTCGG+CGG | - | chr8_3:8173359-8173378 | None:intergenic | 45.0% | |
| GGTTGCCGGAGGAATATTTA+CGG | + | chr8_3:8173499-8173518 | Msa1274410:CDS | 45.0% | |
| !! | AGGAATATTTACGGTGCCGT+CGG | + | chr8_3:8173508-8173527 | Msa1274410:CDS | 45.0% |
| TGATACTCTTCAAAACCCCG+AGG | - | chr8_3:8173569-8173588 | None:intergenic | 45.0% | |
| !!! | TTTTGAGACAGTCCTGACCT+TGG | + | chr8_3:8173980-8173999 | Msa1274410:intron | 45.0% |
| TTCAAGGTTTCACCAAGGTC+AGG | - | chr8_3:8173995-8174014 | None:intergenic | 45.0% | |
| !! | TTGGGTTTTGACGGGAAACA+AGG | + | chr8_3:8174317-8174336 | Msa1274410:intron | 45.0% |
| !! | TGGGTTTTGACGGGAAACAA+GGG | + | chr8_3:8174318-8174337 | Msa1274410:intron | 45.0% |
| GATAAGGAGTCGTTAGAGAG+CGG | + | chr8_3:8174718-8174737 | Msa1274410:intron | 45.0% | |
| AGTCGTTAGAGAGCGGTAAA+AGG | + | chr8_3:8174725-8174744 | Msa1274410:intron | 45.0% | |
| CAATGGCTAGCAATAGTCGT+TGG | - | chr8_3:8174784-8174803 | None:intergenic | 45.0% | |
| ACGACTATTGCTAGCCATTG+AGG | + | chr8_3:8174784-8174803 | Msa1274410:intron | 45.0% | |
| ACTATCCTGTAACGCCTCAA+TGG | - | chr8_3:8174801-8174820 | None:intergenic | 45.0% | |
| ATAGATTCCGTGCAACTGGA+GGG | - | chr8_3:8174973-8174992 | None:intergenic | 45.0% | |
| GAACATAGATTCCGTGCAAC+TGG | - | chr8_3:8174977-8174996 | None:intergenic | 45.0% | |
| GGAAACTCTACAATCACGTG+TGG | + | chr8_3:8175314-8175333 | Msa1274410:CDS | 45.0% | |
| TCTACAATCACGTGTGGAGA+AGG | + | chr8_3:8175320-8175339 | Msa1274410:CDS | 45.0% | |
| TTGTCTTTCTGCCCTGAACA+AGG | + | chr8_3:8175612-8175631 | Msa1274410:CDS | 45.0% | |
| ! | TTACTAGGGCACCTTGTTCA+GGG | - | chr8_3:8175626-8175645 | None:intergenic | 45.0% |
| ! | ATTACTAGGGCACCTTGTTC+AGG | - | chr8_3:8175627-8175646 | None:intergenic | 45.0% |
| GATCTCCAGCAGTGATTACT+AGG | - | chr8_3:8175641-8175660 | None:intergenic | 45.0% | |
| !! | ATTGAGTGGAGGGCATTACA+AGG | + | chr8_3:8175915-8175934 | Msa1274410:CDS | 45.0% |
| ! | GCTTGTTGGCCAAGTGAAAT+AGG | - | chr8_3:8176048-8176067 | None:intergenic | 45.0% |
| ! | TTACAGCCAAGATGGCTTGT+TGG | - | chr8_3:8176062-8176081 | None:intergenic | 45.0% |
| GGGAACTATAAGCAAGTGAC+TGG | + | chr8_3:8176401-8176420 | Msa1274410:three_prime_UTR | 45.0% | |
| !!! | TAAAAAAGTATATATAATAT+TGG | + | chr8_3:8174298-8174317 | Msa1274410:intron | 5.0% |
| !!! | AAAAAAGTATATATAATATT+GGG | + | chr8_3:8174299-8174318 | Msa1274410:intron | 5.0% |
| CGGAAATCAACGGTGGTTTC+CGG | - | chr8_3:8173188-8173207 | None:intergenic | 50.0% | |
| CAATTCGCGGCGATATTCCA+TGG | - | chr8_3:8173463-8173482 | None:intergenic | 50.0% | |
| TGGAATATCGCCGCGAATTG+TGG | + | chr8_3:8173463-8173482 | Msa1274410:CDS | 50.0% | |
| CGGCACCGTAAATATTCCTC+CGG | - | chr8_3:8173507-8173526 | None:intergenic | 50.0% | |
| !! | GGAATATTTACGGTGCCGTC+GGG | + | chr8_3:8173509-8173528 | Msa1274410:CDS | 50.0% |
| ACAGCATCTCTCATTCCCGA+CGG | - | chr8_3:8173527-8173546 | None:intergenic | 50.0% | |
| TCAAAACCCCGAGGTTTCTC+CGG | - | chr8_3:8173560-8173579 | None:intergenic | 50.0% | |
| TTGGAGGGAATTTGGCCTGT+TGG | + | chr8_3:8173677-8173696 | Msa1274410:CDS | 50.0% | |
| !! | CATTGACTTGAGCGTCAGAG+TGG | - | chr8_3:8174606-8174625 | None:intergenic | 50.0% |
| TAGATTCCGTGCAACTGGAG+GGG | - | chr8_3:8174972-8174991 | None:intergenic | 50.0% | |
| CATAGATTCCGTGCAACTGG+AGG | - | chr8_3:8174974-8174993 | None:intergenic | 50.0% | |
| ACAATCACGTGTGGAGAAGG+TGG | + | chr8_3:8175323-8175342 | Msa1274410:CDS | 50.0% | |
| CACTGCTGGAGATCAAATCC+AGG | + | chr8_3:8175647-8175666 | Msa1274410:CDS | 50.0% | |
| !! | GCTTGGCTATAGGCATTGAG+TGG | + | chr8_3:8175901-8175920 | Msa1274410:intron | 50.0% |
| !! | TGGCTATAGGCATTGAGTGG+AGG | + | chr8_3:8175904-8175923 | Msa1274410:intron | 50.0% |
| !! | GGCTATAGGCATTGAGTGGA+GGG | + | chr8_3:8175905-8175924 | Msa1274410:intron | 50.0% |
| ACTTGGCCAACAAGCCATCT+TGG | + | chr8_3:8176053-8176072 | Msa1274410:CDS | 50.0% | |
| GTGGTTTCCGGCATGGTTTG+CGG | - | chr8_3:8173176-8173195 | None:intergenic | 55.0% | |
| ATCAACGGTGGTTTCCGGCA+TGG | - | chr8_3:8173183-8173202 | None:intergenic | 55.0% | |
| AGCCTCCGGTCGTAGATCAA+CGG | + | chr8_3:8173229-8173248 | Msa1274410:CDS | 55.0% | |
| TACCGTTGATCTACGACCGG+AGG | - | chr8_3:8173234-8173253 | None:intergenic | 55.0% | |
| ACTGCAGCAGCCACAATTCG+CGG | - | chr8_3:8173476-8173495 | None:intergenic | 55.0% | |
| AATTGTGGCTGCTGCAGTGG+AGG | + | chr8_3:8173478-8173497 | Msa1274410:CDS | 55.0% | |
| AGATGCTGTGACGAGATCGC+CGG | + | chr8_3:8173538-8173557 | Msa1274410:CDS | 55.0% | |
| TTGAGCGTCAGAGTGGCTAC+AGG | - | chr8_3:8174599-8174618 | None:intergenic | 55.0% | |
| ! | GCTAGCCATTGAGGCGTTAC+AGG | + | chr8_3:8174793-8174812 | Msa1274410:intron | 55.0% |
| AGATTCCCCCTCCAGTTGCA+CGG | + | chr8_3:8174963-8174982 | Msa1274410:intron | 55.0% | |
| AGATTCCGTGCAACTGGAGG+GGG | - | chr8_3:8174971-8174990 | None:intergenic | 55.0% | |
| GGTGCCCTAGTAATCACTGC+TGG | + | chr8_3:8175633-8175652 | Msa1274410:CDS | 55.0% | |
| CGGTGCACGGAAATCAACGG+TGG | - | chr8_3:8173195-8173214 | None:intergenic | 60.0% | |
| CGGCGGTGCACGGAAATCAA+CGG | - | chr8_3:8173198-8173217 | None:intergenic | 60.0% | |
| GATCTACGACCGGAGGCTAC+CGG | - | chr8_3:8173227-8173246 | None:intergenic | 60.0% | |
| GCGAATTGTGGCTGCTGCAG+TGG | + | chr8_3:8173475-8173494 | Msa1274410:CDS | 60.0% | |
| CGAGATCGCCGGAGAAACCT+CGG | + | chr8_3:8173549-8173568 | Msa1274410:CDS | 60.0% | |
| GAGATCGCCGGAGAAACCTC+GGG | + | chr8_3:8173550-8173569 | Msa1274410:CDS | 60.0% | |
| AGATCGCCGGAGAAACCTCG+GGG | + | chr8_3:8173551-8173570 | Msa1274410:CDS | 60.0% | |
| GCTGCTGCAGTGGAGGTTGC+CGG | + | chr8_3:8173485-8173504 | Msa1274410:CDS | 65.0% | |
| !! | GAGGCTACCGGTGATGGCGG+CGG | - | chr8_3:8173215-8173234 | None:intergenic | 70.0% |
| ! | CCGGAGGCTACCGGTGATGG+CGG | - | chr8_3:8173218-8173237 | None:intergenic | 70.0% |
| CCGCCATCACCGGTAGCCTC+CGG | + | chr8_3:8173215-8173234 | Msa1274410:CDS | 70.0% | |
| CGACCGGAGGCTACCGGTGA+TGG | - | chr8_3:8173221-8173240 | None:intergenic | 70.0% | |
| GCTGCAGTGGAGGTTGCCGG+AGG | + | chr8_3:8173488-8173507 | Msa1274410:CDS | 70.0% | |
| !! | CCGGTGATGGCGGCGGTGCA+CGG | - | chr8_3:8173208-8173227 | None:intergenic | 75.0% |
| CCGTGCACCGCCGCCATCAC+CGG | + | chr8_3:8173205-8173224 | Msa1274410:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 8172928 | 8176703 | 8172928 | ID=Msa1274410;Name=Msa1274410 |
| chr8_3 | mRNA | 8172928 | 8176703 | 8172928 | ID=Msa1274410-mRNA-1;Parent=Msa1274410;Name=Msa1274410-mRNA-1;_AED=0.11;_eAED=0.11;_QI=224|1|1|1|1|1|3|572|381 |
| chr8_3 | exon | 8172928 | 8173714 | 8172928 | ID=Msa1274410-mRNA-1:exon:3312;Parent=Msa1274410-mRNA-1 |
| chr8_3 | exon | 8175305 | 8175668 | 8175305 | ID=Msa1274410-mRNA-1:exon:3313;Parent=Msa1274410-mRNA-1 |
| chr8_3 | exon | 8175913 | 8176703 | 8175913 | ID=Msa1274410-mRNA-1:exon:3314;Parent=Msa1274410-mRNA-1 |
| chr8_3 | five_prime_UTR | 8172928 | 8173151 | 8172928 | ID=Msa1274410-mRNA-1:five_prime_utr;Parent=Msa1274410-mRNA-1 |
| chr8_3 | CDS | 8173152 | 8173714 | 8173152 | ID=Msa1274410-mRNA-1:cds;Parent=Msa1274410-mRNA-1 |
| chr8_3 | CDS | 8175305 | 8175668 | 8175305 | ID=Msa1274410-mRNA-1:cds;Parent=Msa1274410-mRNA-1 |
| chr8_3 | CDS | 8175913 | 8176131 | 8175913 | ID=Msa1274410-mRNA-1:cds;Parent=Msa1274410-mRNA-1 |
| chr8_3 | three_prime_UTR | 8176132 | 8176703 | 8176132 | ID=Msa1274410-mRNA-1:three_prime_utr;Parent=Msa1274410-mRNA-1 |
| Gene Sequence |
| Protein sequence |
