AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1147700


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1147700 MtrunA17_Chr7g0234681 98.458 389 6 0 3 391 4 392 0.0 781
Msa1147700 MtrunA17_Chr4g0038121 79.082 392 81 1 1 391 1 392 0.0 633
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1147700 AT2G05990.1 74.286 385 98 1 2 385 3 387 0.0 564
Msa1147700 AT2G05990.2 74.286 385 98 1 2 385 3 387 0.0 564

Find 114 sgRNAs with CRISPR-Local

Find 420 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTATAATCATCGAATAATT+TGG 0.220337 7_4:+27120639 Msa1147700:three_prime_UTR
AACATCTCACTTACATCTTC+TGG 0.235627 7_4:-27116049 None:intergenic
GAATCTGTTAAGAATGATTT+CGG 0.304948 7_4:+27117833 Msa1147700:CDS
AGGCAACGCTGCTGCTTTCT+TGG 0.328247 7_4:+27120345 Msa1147700:CDS
TGAATAGAAGAATCCGGATT+TGG 0.338635 7_4:-27120530 None:intergenic
ACATCTTCTGGGACATCTTC+GGG 0.338881 7_4:-27116037 None:intergenic
CAAATTACATTAATTTGAAA+TGG 0.348676 7_4:+27114379 Msa1147700:exon
TGTAAAGTAAATGTCTAAAC+TGG 0.351330 7_4:-27120785 None:intergenic
TGTAGCTTGCTTGTTTGAAC+TGG 0.373553 7_4:-27114627 None:intergenic
CAATTTCAATGTTGGTCCCT+TGG 0.375366 7_4:-27120475 None:intergenic
ACCCTGCCTCCAACAATTGC+AGG 0.387522 7_4:-27114479 None:intergenic
TACATCTTCTGGGACATCTT+CGG 0.392903 7_4:-27116038 None:intergenic
GAGATTAAGGGTAGAAGAAA+AGG 0.396997 7_4:-27113383 None:intergenic
AATTTAGGTCCTGCAATTGT+TGG 0.398491 7_4:+27114470 Msa1147700:CDS
GTCCTGCAATTGTTGGAGGC+AGG 0.401234 7_4:+27114477 Msa1147700:CDS
GAGTTCTGCTAAAGCTGCTT+TGG 0.401461 7_4:+27118325 Msa1147700:CDS
GCTATGCTGGAGCTTCAAAT+TGG 0.405248 7_4:+27116158 Msa1147700:CDS
TTCTTTCTGTAGTGGTGCAT+TGG 0.413027 7_4:-27120209 None:intergenic
AGCCGTGCTGCGAAAGCAAT+TGG 0.421435 7_4:+27120154 Msa1147700:CDS
TGTTCGAAGTAGTTGAGCTT+TGG 0.423445 7_4:-27113302 None:intergenic
GTGAAACCTCTCAAATCAAT+TGG 0.426776 7_4:-27114656 None:intergenic
AACTTGCCTTGGTTCATGAT+TGG 0.426925 7_4:-27118075 None:intergenic
CTGAAATTCTTGTTGGCACA+TGG 0.429094 7_4:+27115464 Msa1147700:CDS
TTCAATTTCAATTTCAATGT+TGG 0.429897 7_4:-27120483 None:intergenic
GTGGCTGATGACAATGGATA+TGG 0.432724 7_4:+27115406 Msa1147700:CDS
CTTTCGAATGGGTTTGTGAA+TGG 0.433156 7_4:+27120670 Msa1147700:three_prime_UTR
TTTCAAATTAATGTAATTTG+AGG 0.434321 7_4:-27114376 None:intergenic
AATTGTTGGAGGCAGGGTTA+AGG 0.436764 7_4:+27114484 Msa1147700:CDS
GGTAAAAGGGCATTTATTGC+TGG 0.443268 7_4:+27115382 Msa1147700:intron
GTTACAAGATGGATCATTGA+TGG 0.447922 7_4:+27115973 Msa1147700:CDS
TGTGTGTGAATATGAGATTA+AGG 0.448988 7_4:-27113396 None:intergenic
CGCTTATCAAATTAGTCTAT+AGG 0.453015 7_4:-27120704 None:intergenic
ACATCTCACTTACATCTTCT+GGG 0.453855 7_4:-27116048 None:intergenic
TTCAAATTAATGTAATTTGA+GGG 0.456066 7_4:-27114375 None:intergenic
GCAGGAGCTGAAATTCTTGT+TGG 0.467824 7_4:+27115457 Msa1147700:CDS
CAATTTGATACATTAGTAAG+TGG 0.469032 7_4:+27120606 Msa1147700:three_prime_UTR
TTGCTTGTTTGAACTGGACT+CGG 0.470834 7_4:-27114621 None:intergenic
ATAATTTGAATAGAAGAATC+CGG 0.470839 7_4:-27120536 None:intergenic
TACAGTTTGTTCGTCATCAT+AGG 0.473821 7_4:-27120569 None:intergenic
GCTTCAGAGAGGATTATTCC+CGG 0.474860 7_4:+27118203 Msa1147700:CDS
AGAAATGAGAGAGTTTAAAG+TGG 0.475947 7_4:-27113423 None:intergenic
CACAAACCCATTCGAAAGTC+AGG 0.476421 7_4:-27120665 None:intergenic
GGACTAAACGCCATGGGAGT+TGG 0.478063 7_4:+27120418 Msa1147700:CDS
AAAGCTAATAAGCGCTATGC+TGG 0.479446 7_4:+27116145 Msa1147700:CDS
TCCTGCAATTGTTGGAGGCA+GGG 0.482255 7_4:+27114478 Msa1147700:CDS
TACGCGATGTTGAGGCCAGC+TGG 0.485138 7_4:-27114562 None:intergenic
AGTTCAAACAAGCAAGCTAC+AGG 0.489581 7_4:+27114629 Msa1147700:CDS
GCAAAATCTCTTGCAGAGGC+AGG 0.496222 7_4:+27115439 Msa1147700:CDS
GATGTTGAGGCCAGCTGGAA+GGG 0.497173 7_4:-27114557 None:intergenic
TTAAAGACCTCGACATTCCA+AGG 0.498629 7_4:+27120458 Msa1147700:CDS
TGGAGTCCTGACTTTCGAAT+GGG 0.504259 7_4:+27120659 Msa1147700:three_prime_UTR
ACCAGTGATGGCTGATGCTA+AGG 0.504863 7_4:-27120374 None:intergenic
AGAGTTAATACTATATCTGC+AGG 0.508041 7_4:+27118522 Msa1147700:CDS
AATTACTAAAGTGTATCCCT+TGG 0.516955 7_4:+27115997 Msa1147700:CDS
AGCTTCAAATTGGACTGTCC+AGG 0.518132 7_4:+27116168 Msa1147700:CDS
ATCGGCAAAACCCTTCCAGC+TGG 0.518846 7_4:+27114547 Msa1147700:CDS
GAAGAATCCGGATTTGGTGT+TGG 0.522468 7_4:-27120524 None:intergenic
CGATGTTGAGGCCAGCTGGA+AGG 0.523446 7_4:-27114558 None:intergenic
CCCTTAGCATCAGCCATCAC+TGG 0.525047 7_4:+27120373 Msa1147700:CDS
TTGGAGTCCTGACTTTCGAA+TGG 0.525851 7_4:+27120658 Msa1147700:three_prime_UTR
GTGTGTGAATATGAGATTAA+GGG 0.528055 7_4:-27113395 None:intergenic
AAGTGTTTGTCATGTTTCAT+CGG 0.531981 7_4:+27114529 Msa1147700:CDS
AACTATTGTCCGAGACATCT+CGG 0.534077 7_4:+27117986 Msa1147700:CDS
TGCCTTGGTTCATGATTGGA+AGG 0.538331 7_4:-27118071 None:intergenic
ATATCCTTTCCGAGATGTCT+CGG 0.538814 7_4:-27117995 None:intergenic
ATGTCGAGGTCTTTAAATAC+CGG 0.540329 7_4:-27120451 None:intergenic
TTAGGTCCTGCAATTGTTGG+AGG 0.540472 7_4:+27114473 Msa1147700:CDS
GGGAGTTGGAGTCGACAGTC+CGG 0.544328 7_4:+27120432 Msa1147700:CDS
AAATTAATGTAATTTGAGGG+TGG 0.544736 7_4:-27114372 None:intergenic
CACGATATGCAGATATGGTG+GGG 0.547441 7_4:+27118298 Msa1147700:intron
CTGATGACAATGGATATGGC+TGG 0.549684 7_4:+27115410 Msa1147700:CDS
TTTCAATGGCTAGGTCCACT+TGG 0.549950 7_4:+27120130 Msa1147700:intron
GCTGTCATATACGTGGATAA+CGG 0.553495 7_4:+27120397 Msa1147700:CDS
GCATGTAGTTCTTTCTGTAG+TGG 0.554632 7_4:-27120217 None:intergenic
TGCACGATATGCAGATATGG+TGG 0.558236 7_4:+27118296 Msa1147700:intron
GTTGGAGGCAGGGTTAAGGT+TGG 0.559947 7_4:+27114488 Msa1147700:CDS
GTTGGCTCATGTGCTAAACT+AGG 0.560992 7_4:+27114506 Msa1147700:CDS
GCACGATATGCAGATATGGT+GGG 0.565421 7_4:+27118297 Msa1147700:intron
AACCAATTGCTTTCGCAGCA+CGG 0.569745 7_4:-27120156 None:intergenic
CTTCAGAGAGGATTATTCCC+GGG 0.572560 7_4:+27118204 Msa1147700:CDS
ATTCGACAAAATTGTAACAA+AGG 0.579105 7_4:+27114592 Msa1147700:CDS
TTCGCAGCACGGCTTCCAAG+TGG 0.586555 7_4:-27120145 None:intergenic
AAGGGCATTTATTGCTGGTG+TGG 0.587287 7_4:+27115387 Msa1147700:CDS
TGAAATTCTTGTTGGCACAT+GGG 0.589713 7_4:+27115465 Msa1147700:CDS
CAAAATTGTAACAAAGGCAA+TGG 0.592386 7_4:+27114598 Msa1147700:CDS
CACTGGTGCTGTCATATACG+TGG 0.604967 7_4:+27120390 Msa1147700:CDS
AATATATGTTAGAGAGAGCG+AGG 0.607923 7_4:-27118180 None:intergenic
CTTGTGCACTCACTTGCTAA+CGG 0.608026 7_4:+27117869 Msa1147700:CDS
CGATTGCAATGTCAAGACCT+AGG 0.608810 7_4:+27114423 Msa1147700:CDS
GGATAACGGACTAAACGCCA+TGG 0.612060 7_4:+27120411 Msa1147700:CDS
GGATTGCCAATTGATTTGAG+AGG 0.613627 7_4:+27114650 Msa1147700:CDS
TAAAGACCTCGACATTCCAA+GGG 0.616131 7_4:+27120459 Msa1147700:CDS
ACTGTCGACTCCAACTCCCA+TGG 0.616357 7_4:-27120428 None:intergenic
AGAGTAACTAGACGCAGACA+AGG 0.630194 7_4:-27118025 None:intergenic
AGTGTCATAGACTGCATCCA+AGG 0.631619 7_4:-27116014 None:intergenic
CTCACTTGCTAACGGACCAG+AGG 0.633819 7_4:+27117877 Msa1147700:CDS
CTACAGAAAGAACTACATGC+AGG 0.634330 7_4:+27120220 Msa1147700:CDS
GTATATGACAGCACCAGTGA+TGG 0.638192 7_4:-27120386 None:intergenic
GTTGGTCCCTTGGAATGTCG+AGG 0.644635 7_4:-27120465 None:intergenic
TGATGACAATGGATATGGCT+GGG 0.648294 7_4:+27115411 Msa1147700:CDS
CCAGTGATGGCTGATGCTAA+GGG 0.648512 7_4:-27120373 None:intergenic
GTGTCATAGACTGCATCCAA+GGG 0.649282 7_4:-27116013 None:intergenic
ACGATATGCAGATATGGTGG+GGG 0.651454 7_4:+27118299 Msa1147700:intron
TTATCAAATTAGTCTATAGG+TGG 0.651705 7_4:-27120701 None:intergenic
GTATTTGTAACAGAGGAGGT+AGG 0.657611 7_4:+27120325 Msa1147700:intron
ATAAGAAAATGGGATCAATG+TGG 0.658252 7_4:-27113450 None:intergenic
TTGTCCGAGACATCTCGGAA+AGG 0.663357 7_4:+27117991 Msa1147700:CDS
TTCCTTCCAATCATGAACCA+AGG 0.664788 7_4:+27118069 Msa1147700:CDS
GCTGGTGTGGCTGATGACAA+TGG 0.668104 7_4:+27115400 Msa1147700:CDS
AATAGCAAAATCTCTTGCAG+AGG 0.669703 7_4:+27115435 Msa1147700:CDS
GATAACGGACTAAACGCCAT+GGG 0.670540 7_4:+27120412 Msa1147700:CDS
TAACATATATTGCTTCAGAG+AGG 0.670936 7_4:+27118192 Msa1147700:CDS
CTATTCAAATTATGACAATG+CGG 0.692412 7_4:+27120546 Msa1147700:three_prime_UTR
TTTGAGTCTAGCCTACGACG+TGG 0.762074 7_4:+27115836 Msa1147700:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTGAAATTTATATTAAGTT+TGG + chr7_4:27114266-27114285 Msa1147700:intron 10.0%
!!! TGAAAGTTTTTTTTTTTTTT+TGG - chr7_4:27116506-27116525 None:intergenic 10.0%
!! TTTCAAAATCTAATAAAATA+AGG + chr7_4:27116521-27116540 Msa1147700:intron 10.0%
!!! ATCATGTTTTTATTTATTTT+AGG + chr7_4:27118676-27118695 Msa1147700:intron 10.0%
!!! TTTATTTTAGGTTAAATAAA+AGG + chr7_4:27118688-27118707 Msa1147700:intron 10.0%
!! ATCTAATAATTAAAACTAAG+AGG + chr7_4:27113695-27113714 Msa1147700:intron 15.0%
!! TCTAATAATTAAAACTAAGA+GGG + chr7_4:27113696-27113715 Msa1147700:intron 15.0%
!!! CATAATCATATCATATTTTA+TGG + chr7_4:27113812-27113831 Msa1147700:intron 15.0%
!!! TTTCGTTGTATTATAATTTT+TGG + chr7_4:27114313-27114332 Msa1147700:intron 15.0%
!! TTCAAATTAATGTAATTTGA+GGG - chr7_4:27114378-27114397 None:intergenic 15.0%
!! TTTCAAATTAATGTAATTTG+AGG - chr7_4:27114379-27114398 None:intergenic 15.0%
!!! CAAATTACATTAATTTGAAA+TGG + chr7_4:27114379-27114398 Msa1147700:exon 15.0%
!!! AATTTTACATTAATTGACAA+AGG - chr7_4:27115915-27115934 None:intergenic 15.0%
!!! ATTCCTTTTAAAGAAAAATA+TGG + chr7_4:27116768-27116787 Msa1147700:intron 15.0%
!!! TTTTCTTCAAGTTTTTTATT+TGG + chr7_4:27117131-27117150 Msa1147700:intron 15.0%
!!! TAAATTACTTACAACATTTT+TGG - chr7_4:27117354-27117373 None:intergenic 15.0%
!! TTTAATCATTAGAATCAAAT+TGG + chr7_4:27117463-27117482 Msa1147700:intron 15.0%
!!! AAATTTCATAATTTGTATGT+CGG - chr7_4:27118624-27118643 None:intergenic 15.0%
!! TATCATTATAGTTTGATATA+TGG - chr7_4:27119577-27119596 None:intergenic 15.0%
!! ATAAGAATATATACTGATAT+AGG + chr7_4:27119978-27119997 Msa1147700:intron 15.0%
!!! TTTACTTAAAATGTTTTCAA+TGG + chr7_4:27120116-27120135 Msa1147700:intron 15.0%
!! TTTATAATCATCGAATAATT+TGG + chr7_4:27120639-27120658 Msa1147700:three_prime_UTR 15.0%
!!! TACCTTTTTGATAAGAAAAT+GGG - chr7_4:27113463-27113482 None:intergenic 20.0%
!!! TTACCTTTTTGATAAGAAAA+TGG - chr7_4:27113464-27113483 None:intergenic 20.0%
!!! AACTTGTTAAACTATTCAAA+TGG - chr7_4:27113647-27113666 None:intergenic 20.0%
!!! TGAATAGTTTAACAAGTTTT+TGG + chr7_4:27113649-27113668 Msa1147700:intron 20.0%
!! TATCTAATATGAATTTCCAA+AGG - chr7_4:27113903-27113922 None:intergenic 20.0%
!! ACGAATAAGTTATAAATTCA+AGG + chr7_4:27114098-27114117 Msa1147700:intron 20.0%
!!! AGTTTGTAATCAAAGTTTTT+TGG + chr7_4:27114177-27114196 Msa1147700:intron 20.0%
!!! GTTTGTAATCAAAGTTTTTT+GGG + chr7_4:27114178-27114197 Msa1147700:intron 20.0%
!!! AATTTGAAAACTTTTGTGAT+GGG - chr7_4:27114454-27114473 None:intergenic 20.0%
!!! AAATTTGAAAACTTTTGTGA+TGG - chr7_4:27114455-27114474 None:intergenic 20.0%
!!! TCACAAAAGTTTTCAAATTT+AGG + chr7_4:27114455-27114474 Msa1147700:CDS 20.0%
!!! TACAATTTTGTCGAATTTTA+AGG - chr7_4:27114588-27114607 None:intergenic 20.0%
!!! TTTATCTTTTGCTATAGAAA+TGG - chr7_4:27114975-27114994 None:intergenic 20.0%
!! AAAAAGTGAAGATATTATCT+TGG - chr7_4:27115200-27115219 None:intergenic 20.0%
!! GGTAATATTTATTTACTTAC+AGG - chr7_4:27115493-27115512 None:intergenic 20.0%
!!! TTTGGAAAGACATTTTTAAA+CGG + chr7_4:27116689-27116708 Msa1147700:intron 20.0%
!! TAAATTGATCATCATCAATT+TGG + chr7_4:27116727-27116746 Msa1147700:intron 20.0%
!!! TAAGAAAAATAATTGACTCT+TGG + chr7_4:27116818-27116837 Msa1147700:intron 20.0%
!! AAAAAACTTGAAGAAAATCA+AGG - chr7_4:27117128-27117147 None:intergenic 20.0%
!!! ATAATGCTTTTTGAAACATA+GGG + chr7_4:27117184-27117203 Msa1147700:intron 20.0%
!! TAGAAATGAAAATGTTATGA+TGG + chr7_4:27117414-27117433 Msa1147700:intron 20.0%
!! TTATTGTAAAATAATACCTC+TGG - chr7_4:27117896-27117915 None:intergenic 20.0%
!!! TATTTTACAATAATGAGATG+AGG + chr7_4:27117903-27117922 Msa1147700:intron 20.0%
!! AAAGAAATCAACTCTATTAT+AGG + chr7_4:27117957-27117976 Msa1147700:intron 20.0%
!!! TTTTTGAAATTGCATTTATC+AGG + chr7_4:27118464-27118483 Msa1147700:intron 20.0%
!!! ATTTTAGGTTAAATAAAAGG+TGG + chr7_4:27118691-27118710 Msa1147700:intron 20.0%
!! CAAATATAACTTAAGCTTAA+AGG + chr7_4:27119226-27119245 Msa1147700:intron 20.0%
!! AATTAGAATATTGTCGTATA+TGG + chr7_4:27119453-27119472 Msa1147700:intron 20.0%
!!! ATGAATAATAAGAAGCATAT+CGG - chr7_4:27119774-27119793 None:intergenic 20.0%
!!! ATTCATATCGAATACTTTTT+GGG - chr7_4:27119805-27119824 None:intergenic 20.0%
!!! AATTCATATCGAATACTTTT+TGG - chr7_4:27119806-27119825 None:intergenic 20.0%
!!! AAATTGTATGTTTTTTGTGA+CGG + chr7_4:27119946-27119965 Msa1147700:intron 20.0%
!! CATTTGCATACTAAAAATTA+GGG - chr7_4:27120291-27120310 None:intergenic 20.0%
!! TCATTTGCATACTAAAAATT+AGG - chr7_4:27120292-27120311 None:intergenic 20.0%
!! TTCAATTTCAATTTCAATGT+TGG - chr7_4:27120486-27120505 None:intergenic 20.0%
!! ATAATTTGAATAGAAGAATC+CGG - chr7_4:27120539-27120558 None:intergenic 20.0%
!!! ATTTTTTATGCCATTTTTCA+AGG + chr7_4:27120733-27120752 Msa1147700:three_prime_UTR 20.0%
! GAAAAGGAAAAAAAAAACGT+TGG - chr7_4:27113370-27113389 None:intergenic 25.0%
!! ATCCCATTTTCTTATCAAAA+AGG + chr7_4:27113458-27113477 Msa1147700:five_prime_UTR 25.0%
! AAACAAAAGAGAACAAGAAA+AGG - chr7_4:27113509-27113528 None:intergenic 25.0%
! TAATGCAATCATGTAAATGT+TGG + chr7_4:27113537-27113556 Msa1147700:intron 25.0%
!!! TTAACAAGTTTTTGGTTCAA+AGG + chr7_4:27113657-27113676 Msa1147700:intron 25.0%
!!! TCATGTTTTTCGTAATTTGT+TGG + chr7_4:27113722-27113741 Msa1147700:intron 25.0%
!! TAAGCAAGGAAATTTTCAAA+TGG + chr7_4:27114202-27114221 Msa1147700:intron 25.0%
! CCTTGATAAAATGTTTGAAA+TGG - chr7_4:27114231-27114250 None:intergenic 25.0%
!! CCATTTCAAACATTTTATCA+AGG + chr7_4:27114228-27114247 Msa1147700:intron 25.0%
! AAATTAATGTAATTTGAGGG+TGG - chr7_4:27114375-27114394 None:intergenic 25.0%
!! ATTTGAAAACTTTTGTGATG+GGG - chr7_4:27114453-27114472 None:intergenic 25.0%
! ATTCGACAAAATTGTAACAA+AGG + chr7_4:27114592-27114611 Msa1147700:CDS 25.0%
! GAATGAGTAAACTGTTAATA+GGG - chr7_4:27114853-27114872 None:intergenic 25.0%
! TTCCAAAATCTACTTAAAGT+CGG + chr7_4:27114870-27114889 Msa1147700:intron 25.0%
!! CAGAAATAACTGATTTATGA+GGG - chr7_4:27115229-27115248 None:intergenic 25.0%
!! TCAGAAATAACTGATTTATG+AGG - chr7_4:27115230-27115249 None:intergenic 25.0%
!!! TTGACATGATACAGTTTTAA+TGG + chr7_4:27115291-27115310 Msa1147700:intron 25.0%
!! TAATTTTATGTGCAGGTAAA+AGG + chr7_4:27115368-27115387 Msa1147700:intron 25.0%
!! AATTTTATGTGCAGGTAAAA+GGG + chr7_4:27115369-27115388 Msa1147700:intron 25.0%
! AAACAGACAACATTAGAATT+CGG - chr7_4:27115514-27115533 None:intergenic 25.0%
! TATTCAACAACATTGTTTCA+GGG - chr7_4:27115554-27115573 None:intergenic 25.0%
! TTGTACTAAATATCGTATAG+CGG - chr7_4:27115629-27115648 None:intergenic 25.0%
! ATTAGTGCTATGATTTATAC+AGG + chr7_4:27115764-27115783 Msa1147700:intron 25.0%
!! TAACTATTACATTTTCATGC+AGG + chr7_4:27115802-27115821 Msa1147700:intron 25.0%
!!! ATTTTAAGTATGTTGCTAAC+AGG + chr7_4:27115932-27115951 Msa1147700:intron 25.0%
!! ATGATGATATATTTTGTGCA+TGG - chr7_4:27116102-27116121 None:intergenic 25.0%
! ATCTATTGTGAAAATTGTGT+AGG + chr7_4:27116120-27116139 Msa1147700:intron 25.0%
! ACAGAATGATAATATATACC+TGG - chr7_4:27116189-27116208 None:intergenic 25.0%
! AAAACATAAGTTGTTCATAG+AGG + chr7_4:27116409-27116428 Msa1147700:intron 25.0%
! GGTGATTTACAATGTAAATT+TGG - chr7_4:27116484-27116503 None:intergenic 25.0%
! ACATGAGATTAATGTTCAAT+TGG + chr7_4:27116550-27116569 Msa1147700:intron 25.0%
!! CCTCCATATTTTTCTTTAAA+AGG - chr7_4:27116774-27116793 None:intergenic 25.0%
!!! CCTTTTAAAGAAAAATATGG+AGG + chr7_4:27116771-27116790 Msa1147700:intron 25.0%
! ATTTCAATGCCAGTTTATTT+CGG + chr7_4:27116937-27116956 Msa1147700:intron 25.0%
! CATCAGTAACATACATTAAT+AGG + chr7_4:27116986-27117005 Msa1147700:intron 25.0%
! GAATCAAAACTTTCATATTC+AGG - chr7_4:27117084-27117103 None:intergenic 25.0%
!!! TGTTTCAAAAAGCATTATCT+AGG - chr7_4:27117182-27117201 None:intergenic 25.0%
!!! GATAATGCTTTTTGAAACAT+AGG + chr7_4:27117183-27117202 Msa1147700:intron 25.0%
! ATGAATGATTCAACATGAAA+AGG + chr7_4:27117437-27117456 Msa1147700:intron 25.0%
!!! GTTTTGTATTTGTTACTCTA+TGG + chr7_4:27117729-27117748 Msa1147700:intron 25.0%
! GAATCTGTTAAGAATGATTT+CGG + chr7_4:27117833-27117852 Msa1147700:CDS 25.0%
! ATCAAAATGTAATCTCTCTT+AGG - chr7_4:27118106-27118125 None:intergenic 25.0%
! AGTGAGAACAGATATATTTA+AGG - chr7_4:27118136-27118155 None:intergenic 25.0%
! CAATTTCAAAAAATCCAAAG+GGG - chr7_4:27118456-27118475 None:intergenic 25.0%
! GCAATTTCAAAAAATCCAAA+GGG - chr7_4:27118457-27118476 None:intergenic 25.0%
! TGCAATTTCAAAAAATCCAA+AGG - chr7_4:27118458-27118477 None:intergenic 25.0%
!! GAAAATGCTATGCTATTTAT+CGG + chr7_4:27118831-27118850 Msa1147700:intron 25.0%
! ATGGAGCTTAAAAAATGTAT+TGG + chr7_4:27118897-27118916 Msa1147700:intron 25.0%
! TAAATGAGAAGTTAGAGATA+TGG + chr7_4:27118952-27118971 Msa1147700:intron 25.0%
! AAATGAGAAGTTAGAGATAT+GGG + chr7_4:27118953-27118972 Msa1147700:intron 25.0%
!!! ACGAACAATTTTTAATTCAG+AGG + chr7_4:27119052-27119071 Msa1147700:intron 25.0%
! AGACAAAGAGATATTAACTA+TGG + chr7_4:27119150-27119169 Msa1147700:intron 25.0%
! GACAAAGAGATATTAACTAT+GGG + chr7_4:27119151-27119170 Msa1147700:intron 25.0%
! ATGGAATTGAATGTTTAGAA+CGG + chr7_4:27119286-27119305 Msa1147700:intron 25.0%
! TATAACAATGTTACTATGTG+TGG + chr7_4:27119345-27119364 Msa1147700:intron 25.0%
! ATAACAATGTTACTATGTGT+GGG + chr7_4:27119346-27119365 Msa1147700:intron 25.0%
! TAGCTTTCATAATAGAGAAA+AGG + chr7_4:27119426-27119445 Msa1147700:intron 25.0%
! AGCTTTCATAATAGAGAAAA+GGG + chr7_4:27119427-27119446 Msa1147700:intron 25.0%
! AAGTTCATAATAACAACAGT+AGG - chr7_4:27119635-27119654 None:intergenic 25.0%
! TTAGACTGTTAACATATACT+TGG - chr7_4:27119692-27119711 None:intergenic 25.0%
! AAACATGTATCTTATCCAAA+TGG - chr7_4:27119897-27119916 None:intergenic 25.0%
! AGAATATATACTGATATAGG+TGG + chr7_4:27119981-27120000 Msa1147700:intron 25.0%
! GAATATATACTGATATAGGT+GGG + chr7_4:27119982-27120001 Msa1147700:intron 25.0%
! AATATATACTGATATAGGTG+GGG + chr7_4:27119983-27120002 Msa1147700:intron 25.0%
!! TTAAAATGTTTTCAATGGCT+AGG + chr7_4:27120121-27120140 Msa1147700:intron 25.0%
! CTATTCAAATTATGACAATG+CGG + chr7_4:27120546-27120565 Msa1147700:three_prime_UTR 25.0%
! CAATTTGATACATTAGTAAG+TGG + chr7_4:27120606-27120625 Msa1147700:three_prime_UTR 25.0%
!! TTATCAAATTAGTCTATAGG+TGG - chr7_4:27120704-27120723 None:intergenic 25.0%
GTGTGTGAATATGAGATTAA+GGG - chr7_4:27113398-27113417 None:intergenic 30.0%
TGTGTGTGAATATGAGATTA+AGG - chr7_4:27113399-27113418 None:intergenic 30.0%
AGAAATGAGAGAGTTTAAAG+TGG - chr7_4:27113426-27113445 None:intergenic 30.0%
ATAAGAAAATGGGATCAATG+TGG - chr7_4:27113453-27113472 None:intergenic 30.0%
TTCAAAGGTGGAAATTTCTT+TGG + chr7_4:27113672-27113691 Msa1147700:intron 30.0%
!! TTTCGTAATTTGTTGGAATC+TGG + chr7_4:27113729-27113748 Msa1147700:intron 30.0%
!! TTCGTAATTTGTTGGAATCT+GGG + chr7_4:27113730-27113749 Msa1147700:intron 30.0%
!! AAAGATGCATTTTGATCCTT+TGG + chr7_4:27113884-27113903 Msa1147700:intron 30.0%
!!! AAAGTTTTTTGGGATAAGCA+AGG + chr7_4:27114188-27114207 Msa1147700:intron 30.0%
AAGTGTTTGTCATGTTTCAT+CGG + chr7_4:27114529-27114548 Msa1147700:CDS 30.0%
CAAAATTGTAACAAAGGCAA+TGG + chr7_4:27114598-27114617 Msa1147700:CDS 30.0%
AAATAGACACTATAGTACGA+AGG - chr7_4:27114699-27114718 None:intergenic 30.0%
!!! AGAAGGAAGTATCTTTTTTG+TGG + chr7_4:27114821-27114840 Msa1147700:intron 30.0%
GGAATGAGTAAACTGTTAAT+AGG - chr7_4:27114854-27114873 None:intergenic 30.0%
!! AACCGACTTTAAGTAGATTT+TGG - chr7_4:27114875-27114894 None:intergenic 30.0%
AAGCTATCATGGAAAACTTA+TGG + chr7_4:27115038-27115057 Msa1147700:intron 30.0%
!! ACATGTTCATAAGCTGTTTT+CGG - chr7_4:27115071-27115090 None:intergenic 30.0%
ATGCAAAAGATTCCTTTCAA+CGG - chr7_4:27115155-27115174 None:intergenic 30.0%
! AAAGGAATCTTTTGCATTTG+AGG + chr7_4:27115158-27115177 Msa1147700:intron 30.0%
!! GATGCTTTTCTTCTTTTTCA+CGG + chr7_4:27115248-27115267 Msa1147700:intron 30.0%
! CTGAAAGTAATTTTATGTGC+AGG + chr7_4:27115361-27115380 Msa1147700:intron 30.0%
CTATTCAACAACATTGTTTC+AGG - chr7_4:27115555-27115574 None:intergenic 30.0%
GAAACAATGTTGTTGAATAG+TGG + chr7_4:27115555-27115574 Msa1147700:intron 30.0%
TACAAAATGTTGTCAAACAG+CGG + chr7_4:27115644-27115663 Msa1147700:intron 30.0%
CACTAATATAACTAGACTTC+AGG - chr7_4:27115751-27115770 None:intergenic 30.0%
AATTACTAAAGTGTATCCCT+TGG + chr7_4:27115997-27116016 Msa1147700:CDS 30.0%
!! CTTATGTTTTTAACGCATGA+AGG - chr7_4:27116399-27116418 None:intergenic 30.0%
TGTGGAATTTATGTGACTAA+GGG - chr7_4:27117016-27117035 None:intergenic 30.0%
TTGTGGAATTTATGTGACTA+AGG - chr7_4:27117017-27117036 None:intergenic 30.0%
AAAACTTTCATATTCAGGCT+TGG - chr7_4:27117079-27117098 None:intergenic 30.0%
AATATATTCCTCAAGCTTGA+AGG + chr7_4:27117302-27117321 Msa1147700:intron 30.0%
AAAATATTCCTTCAAGCTTG+AGG - chr7_4:27117313-27117332 None:intergenic 30.0%
GTAAGTAATTTAATGTCGAG+TGG + chr7_4:27117362-27117381 Msa1147700:intron 30.0%
ATTTAATGTCGAGTGGTAAA+AGG + chr7_4:27117369-27117388 Msa1147700:intron 30.0%
GATGTTACTACGATAGTTTA+AGG + chr7_4:27117552-27117571 Msa1147700:intron 30.0%
AAATCATTAAGCGAGATTAG+AGG + chr7_4:27117603-27117622 Msa1147700:intron 30.0%
TAACATATATTGCTTCAGAG+AGG + chr7_4:27118192-27118211 Msa1147700:CDS 30.0%
TTTAGCATATCAAACATACC+CGG - chr7_4:27118225-27118244 None:intergenic 30.0%
AGAGTTAATACTATATCTGC+AGG + chr7_4:27118522-27118541 Msa1147700:CDS 30.0%
TTAGAAACAGCAATGCTAAA+TGG - chr7_4:27118782-27118801 None:intergenic 30.0%
!! TTATCAGTCATCACTTTTCA+GGG - chr7_4:27118807-27118826 None:intergenic 30.0%
!! ATTATCAGTCATCACTTTTC+AGG - chr7_4:27118808-27118827 None:intergenic 30.0%
! TTTTAAGCTCCATCATTCAA+CGG - chr7_4:27118890-27118909 None:intergenic 30.0%
AATGAGAAGTTAGAGATATG+GGG + chr7_4:27118954-27118973 Msa1147700:intron 30.0%
!! TGGAAGTAAAACGGATTATA+TGG + chr7_4:27119010-27119029 Msa1147700:intron 30.0%
GTTCATCATTCAAAGTGAAA+GGG + chr7_4:27119127-27119146 Msa1147700:intron 30.0%
ACAAGACTAGTAATGTTGTA+TGG + chr7_4:27119267-27119286 Msa1147700:intron 30.0%
AGGAATAGAAATACAACCAT+TGG + chr7_4:27119388-27119407 Msa1147700:intron 30.0%
!!! GTATATGGTTTTAGCATGTA+AGG + chr7_4:27119468-27119487 Msa1147700:intron 30.0%
!! CTTTCTTTAGCTCTAGTTAT+TGG - chr7_4:27119544-27119563 None:intergenic 30.0%
AAGCCTAGATACTTCAAAAA+TGG + chr7_4:27119717-27119736 Msa1147700:intron 30.0%
!!! CTTCCATTTTTGAAGTATCT+AGG - chr7_4:27119723-27119742 None:intergenic 30.0%
! CTTCAAAAATGGAAGAGTAT+CGG + chr7_4:27119728-27119747 Msa1147700:intron 30.0%
TAAAGACACAACTATCCATT+TGG + chr7_4:27119879-27119898 Msa1147700:intron 30.0%
TATGCAAATGACTTACACTT+TGG + chr7_4:27120301-27120320 Msa1147700:intron 30.0%
!!! TTTTTTTCCAACACCAAATC+CGG + chr7_4:27120517-27120536 Msa1147700:three_prime_UTR 30.0%
! CGCTTATCAAATTAGTCTAT+AGG - chr7_4:27120707-27120726 None:intergenic 30.0%
GAGATTAAGGGTAGAAGAAA+AGG - chr7_4:27113386-27113405 None:intergenic 35.0%
AGAGAACAAGAAAAGGATCA+TGG - chr7_4:27113502-27113521 None:intergenic 35.0%
!!! ACAAGTTTTTGGTTCAAAGG+TGG + chr7_4:27113660-27113679 Msa1147700:intron 35.0%
! ATCTGGGACTAATGTAGTAA+AGG + chr7_4:27113746-27113765 Msa1147700:intron 35.0%
! TCTGGGACTAATGTAGTAAA+GGG + chr7_4:27113747-27113766 Msa1147700:intron 35.0%
TGTTTGTGTCAGTGTTTCAT+AGG + chr7_4:27114065-27114084 Msa1147700:intron 35.0%
GAATATGCTTGATGTGAAGT+TGG + chr7_4:27114148-27114167 Msa1147700:intron 35.0%
! GCAAGGAAATTTTCAAATGG+TGG + chr7_4:27114205-27114224 Msa1147700:intron 35.0%
AATTTAGGTCCTGCAATTGT+TGG + chr7_4:27114470-27114489 Msa1147700:CDS 35.0%
GTGAAACCTCTCAAATCAAT+TGG - chr7_4:27114659-27114678 None:intergenic 35.0%
ACTATAGTACGAAGGATTCA+TGG - chr7_4:27114691-27114710 None:intergenic 35.0%
AGTATGGGAAGAGTGATAAA+GGG - chr7_4:27114785-27114804 None:intergenic 35.0%
ACATTGCTTCAGATGAGTAT+GGG - chr7_4:27114800-27114819 None:intergenic 35.0%
AACATTGCTTCAGATGAGTA+TGG - chr7_4:27114801-27114820 None:intergenic 35.0%
! TCATCTGAAGCAATGTTAGA+AGG + chr7_4:27114804-27114823 Msa1147700:intron 35.0%
GTAAACTGTTAATAGGGATG+TGG - chr7_4:27114847-27114866 None:intergenic 35.0%
! CTGTGTATCCAATTTTCGAT+CGG - chr7_4:27114900-27114919 None:intergenic 35.0%
!! GCTGTTTTCATAAGCTATCA+TGG + chr7_4:27115027-27115046 Msa1147700:intron 35.0%
TAAGCACTTGTGAGATTGTT+TGG - chr7_4:27115118-27115137 None:intergenic 35.0%
! TGCTGCGTTTTCTTATAAGA+TGG - chr7_4:27115336-27115355 None:intergenic 35.0%
AATAGCAAAATCTCTTGCAG+AGG + chr7_4:27115435-27115454 Msa1147700:CDS 35.0%
TGAAATTCTTGTTGGCACAT+GGG + chr7_4:27115465-27115484 Msa1147700:CDS 35.0%
TTGTTGAATAGTGGCTATAG+TGG + chr7_4:27115564-27115583 Msa1147700:intron 35.0%
!! AAACAAACCGCTATTTTCTG+TGG + chr7_4:27115706-27115725 Msa1147700:intron 35.0%
ACACAAACCACAGAAAATAG+CGG - chr7_4:27115716-27115735 None:intergenic 35.0%
CCATCTTGTAACCTGAAAAA+TGG - chr7_4:27115965-27115984 None:intergenic 35.0%
!!! CCATTTTTCAGGTTACAAGA+TGG + chr7_4:27115962-27115981 Msa1147700:intron 35.0%
GTTACAAGATGGATCATTGA+TGG + chr7_4:27115973-27115992 Msa1147700:CDS 35.0%
ACATCTCACTTACATCTTCT+GGG - chr7_4:27116051-27116070 None:intergenic 35.0%
AACATCTCACTTACATCTTC+TGG - chr7_4:27116052-27116071 None:intergenic 35.0%
!! GTCGTTTATTTTCTGATCGT+AGG + chr7_4:27116339-27116358 Msa1147700:intron 35.0%
!! TCCACTTTTCTTGTACACTT+TGG + chr7_4:27116580-27116599 Msa1147700:intron 35.0%
TCCAAAGTGTACAAGAAAAG+TGG - chr7_4:27116584-27116603 None:intergenic 35.0%
! AAAGATTGTCCTGTTTCTCA+TGG + chr7_4:27116645-27116664 Msa1147700:intron 35.0%
!! ACATTGGTGTCAAAGGAATT+TGG + chr7_4:27116671-27116690 Msa1147700:intron 35.0%
!!! ATGCTTTTTCTTTCTCTCCT+TGG + chr7_4:27116877-27116896 Msa1147700:intron 35.0%
!! ACATTTTCACTTTTCAGCCA+AGG - chr7_4:27116897-27116916 None:intergenic 35.0%
AAAAGTGAAAATGTGCATGC+AGG + chr7_4:27116903-27116922 Msa1147700:intron 35.0%
! AACTGGCATTGAAATTAACC+AGG - chr7_4:27116932-27116951 None:intergenic 35.0%
AGTCAACAACCGAAATAAAC+TGG - chr7_4:27116949-27116968 None:intergenic 35.0%
ACATAAATTCCACAAGCTAG+AGG + chr7_4:27117022-27117041 Msa1147700:intron 35.0%
CATAAATTCCACAAGCTAGA+GGG + chr7_4:27117023-27117042 Msa1147700:intron 35.0%
TTTGTCTGCTAGCAAAAAAG+AGG - chr7_4:27117212-27117231 None:intergenic 35.0%
TAATGATGTTCAGTGTGCTT+AGG - chr7_4:27117236-27117255 None:intergenic 35.0%
TCAAATTGGTGTAGTTTCCA+TGG + chr7_4:27117477-27117496 Msa1147700:intron 35.0%
TAGTTTCCATGGTAGAGAAA+TGG + chr7_4:27117488-27117507 Msa1147700:intron 35.0%
GTTACTACGATAGTTTAAGG+CGG + chr7_4:27117555-27117574 Msa1147700:intron 35.0%
TAAGCGAGATTAGAGGTAAA+TGG + chr7_4:27117610-27117629 Msa1147700:intron 35.0%
GAGGTAAATGGTCTAATCTT+TGG + chr7_4:27117622-27117641 Msa1147700:intron 35.0%
!! AGAAGGTCTTGTTGTGTATT+AGG - chr7_4:27117649-27117668 None:intergenic 35.0%
AAAGATCGATTGTCATCAGA+AGG - chr7_4:27117666-27117685 None:intergenic 35.0%
TTGCATTTGTATTTCCTTGC+AGG + chr7_4:27117802-27117821 Msa1147700:intron 35.0%
AATATATGTTAGAGAGAGCG+AGG - chr7_4:27118183-27118202 None:intergenic 35.0%
TTAGCATATCAAACATACCC+GGG - chr7_4:27118224-27118243 None:intergenic 35.0%
AATTGCACGATATGCAGATA+TGG + chr7_4:27118293-27118312 Msa1147700:intron 35.0%
AAAAAATCCAAAGGGGAAGA+GGG - chr7_4:27118449-27118468 None:intergenic 35.0%
!! ACTATATCTGCAGGTATTGA+TGG + chr7_4:27118531-27118550 Msa1147700:intron 35.0%
TATGTCGGATTTGATTGTAC+GGG - chr7_4:27118609-27118628 None:intergenic 35.0%
GTATGTCGGATTTGATTGTA+CGG - chr7_4:27118610-27118629 None:intergenic 35.0%
!! TGGTGTTACATAAGTGTCAT+TGG + chr7_4:27118711-27118730 Msa1147700:intron 35.0%
GAAATTTAGCCGTTGAATGA+TGG + chr7_4:27118878-27118897 Msa1147700:intron 35.0%
GGTTCATCATTCAAAGTGAA+AGG + chr7_4:27119126-27119145 Msa1147700:intron 35.0%
ATTAACTATGGGATTCGAGT+AGG + chr7_4:27119162-27119181 Msa1147700:intron 35.0%
TTAACTATGGGATTCGAGTA+GGG + chr7_4:27119163-27119182 Msa1147700:intron 35.0%
ATTTGTATCGCATACTACAC+TGG - chr7_4:27119211-27119230 None:intergenic 35.0%
GTTGTTACACAAGACAAGAT+AGG + chr7_4:27119368-27119387 Msa1147700:intron 35.0%
AACCATTGGAGAGAAACATT+AGG + chr7_4:27119402-27119421 Msa1147700:intron 35.0%
ATCCTAATGTTTCTCTCCAA+TGG - chr7_4:27119407-27119426 None:intergenic 35.0%
!! ATGAACTTTTTCCTCCAAGT+TGG + chr7_4:27119647-27119666 Msa1147700:intron 35.0%
!! TGAACTTTTTCCTCCAAGTT+GGG + chr7_4:27119648-27119667 Msa1147700:intron 35.0%
ACAATGCGACACATAATAAG+AGG - chr7_4:27120062-27120081 None:intergenic 35.0%
TGCAGGTAATATTATTACCC+TGG + chr7_4:27120237-27120256 Msa1147700:intron 35.0%
GGGAAATGTTCATTTCAGAA+TGG - chr7_4:27120271-27120290 None:intergenic 35.0%
! CTTTGGTGTATTTGTAACAG+AGG + chr7_4:27120318-27120337 Msa1147700:intron 35.0%
ATGTCGAGGTCTTTAAATAC+CGG - chr7_4:27120454-27120473 None:intergenic 35.0%
TGAATAGAAGAATCCGGATT+TGG - chr7_4:27120533-27120552 None:intergenic 35.0%
! TACAGTTTGTTCGTCATCAT+AGG - chr7_4:27120572-27120591 None:intergenic 35.0%
CCTGTATGATCCTTGAAAAA+TGG - chr7_4:27120746-27120765 None:intergenic 35.0%
!!! CCATTTTTCAAGGATCATAC+AGG + chr7_4:27120743-27120762 Msa1147700:three_prime_UTR 35.0%
TGTTCGAAGTAGTTGAGCTT+TGG - chr7_4:27113305-27113324 None:intergenic 40.0%
!! AAAAACGTTGGAAGTGTCGA+TGG - chr7_4:27113358-27113377 None:intergenic 40.0%
!! AAAAACGTTGGAAGTGTCGA+TGG - chr7_4:27113358-27113377 None:intergenic 40.0%
!! TTTTGTGATGGGGTAATCCT+AGG - chr7_4:27114443-27114462 None:intergenic 40.0%
!!! TTTTAAGGTACGCGATGTTG+AGG - chr7_4:27114573-27114592 None:intergenic 40.0%
TTGCTTGTTTGAACTGGACT+CGG - chr7_4:27114624-27114643 None:intergenic 40.0%
!! TGTAGCTTGCTTGTTTGAAC+TGG - chr7_4:27114630-27114649 None:intergenic 40.0%
AGTTCAAACAAGCAAGCTAC+AGG + chr7_4:27114629-27114648 Msa1147700:CDS 40.0%
!! GGATTGCCAATTGATTTGAG+AGG + chr7_4:27114650-27114669 Msa1147700:CDS 40.0%
GAGTATGGGAAGAGTGATAA+AGG - chr7_4:27114786-27114805 None:intergenic 40.0%
TCGGTTTACCGATCGAAAAT+TGG + chr7_4:27114889-27114908 Msa1147700:intron 40.0%
TCAGTACATAAGCCGTTGAA+AGG + chr7_4:27115140-27115159 Msa1147700:intron 40.0%
!! GAATCTTTTGCATTTGAGGC+TGG + chr7_4:27115162-27115181 Msa1147700:intron 40.0%
!! GGTAAAAGGGCATTTATTGC+TGG + chr7_4:27115382-27115401 Msa1147700:intron 40.0%
TGATGACAATGGATATGGCT+GGG + chr7_4:27115411-27115430 Msa1147700:CDS 40.0%
CTGAAATTCTTGTTGGCACA+TGG + chr7_4:27115464-27115483 Msa1147700:CDS 40.0%
TGTTATAGCGCAGCACAATT+TGG + chr7_4:27115587-27115606 Msa1147700:intron 40.0%
ATTTGACGAATCACGCAAGT+AGG + chr7_4:27115862-27115881 Msa1147700:intron 40.0%
!! TACATCTTCTGGGACATCTT+CGG - chr7_4:27116041-27116060 None:intergenic 40.0%
AAAGCTAATAAGCGCTATGC+TGG + chr7_4:27116145-27116164 Msa1147700:CDS 40.0%
CAATGTTGTCCATGAGAAAC+AGG - chr7_4:27116657-27116676 None:intergenic 40.0%
! CTGTTTCTCATGGACAACAT+TGG + chr7_4:27116655-27116674 Msa1147700:intron 40.0%
!! ATGGACAACATTGGTGTCAA+AGG + chr7_4:27116664-27116683 Msa1147700:intron 40.0%
! TTTTTAAACGGCAGCACTGT+TGG + chr7_4:27116701-27116720 Msa1147700:intron 40.0%
! TTTTAAACGGCAGCACTGTT+GGG + chr7_4:27116702-27116721 Msa1147700:intron 40.0%
! TAAGTAATCCCTCTAGCTTG+TGG - chr7_4:27117034-27117053 None:intergenic 40.0%
GGTCAGAAATAAGTGGAAGA+TGG - chr7_4:27117058-27117077 None:intergenic 40.0%
CATGAACCATTTCTCTACCA+TGG - chr7_4:27117497-27117516 None:intergenic 40.0%
CCTTTAGCAATAAGTGGAGT+AGG - chr7_4:27117693-27117712 None:intergenic 40.0%
CCTACTCCACTTATTGCTAA+AGG + chr7_4:27117690-27117709 Msa1147700:intron 40.0%
AGCAAGCCTTTAGCAATAAG+TGG - chr7_4:27117699-27117718 None:intergenic 40.0%
AGATTCAACAACTTCCTGCA+AGG - chr7_4:27117819-27117838 None:intergenic 40.0%
AACTATTGTCCGAGACATCT+CGG + chr7_4:27117986-27118005 Msa1147700:CDS 40.0%
ATATCCTTTCCGAGATGTCT+CGG - chr7_4:27117998-27118017 None:intergenic 40.0%
TTCCTTCCAATCATGAACCA+AGG + chr7_4:27118069-27118088 Msa1147700:CDS 40.0%
AACTTGCCTTGGTTCATGAT+TGG - chr7_4:27118078-27118097 None:intergenic 40.0%
CTTAGGTAATGAACTTGCCT+TGG - chr7_4:27118089-27118108 None:intergenic 40.0%
!!! CACTGCTCTGTTTTGGTTAT+AGG + chr7_4:27118152-27118171 Msa1147700:intron 40.0%
!!! TGCTCTGTTTTGGTTATAGG+TGG + chr7_4:27118155-27118174 Msa1147700:intron 40.0%
AGGTTAGGAACACGAAAGTA+CGG - chr7_4:27118424-27118443 None:intergenic 40.0%
AAAAATCCAAAGGGGAAGAG+GGG - chr7_4:27118448-27118467 None:intergenic 40.0%
CAAAAAATCCAAAGGGGAAG+AGG - chr7_4:27118450-27118469 None:intergenic 40.0%
! TACATAAGTGTCATTGGAGC+TGG + chr7_4:27118717-27118736 Msa1147700:intron 40.0%
CTGCTCAAGTGGAAGTAAAA+CGG + chr7_4:27119001-27119020 Msa1147700:intron 40.0%
! TCTCATGTTTTCAGTCGCTT+GGG + chr7_4:27119105-27119124 Msa1147700:intron 40.0%
! GAGAAGACTTGTAGAAGCAT+TGG + chr7_4:27119490-27119509 Msa1147700:intron 40.0%
!! AGACTTGTAGAAGCATTGGT+AGG + chr7_4:27119494-27119513 Msa1147700:intron 40.0%
!! GACTTGTAGAAGCATTGGTA+GGG + chr7_4:27119495-27119514 Msa1147700:intron 40.0%
!! ACTTGTAGAAGCATTGGTAG+GGG + chr7_4:27119496-27119515 Msa1147700:intron 40.0%
AGTTATTGGACTATCCCTCT+TGG - chr7_4:27119530-27119549 None:intergenic 40.0%
TGACAAGCAAAAACCCAACT+TGG - chr7_4:27119664-27119683 None:intergenic 40.0%
! ATAAGAAGCATATCGGTCTC+AGG - chr7_4:27119767-27119786 None:intergenic 40.0%
TCGCATTGTACTATGTATCC+AGG + chr7_4:27120073-27120092 Msa1147700:intron 40.0%
AGTATGTCAACTGAAAAGCC+TGG - chr7_4:27120094-27120113 None:intergenic 40.0%
TTCTTTCTGTAGTGGTGCAT+TGG - chr7_4:27120212-27120231 None:intergenic 40.0%
GCATGTAGTTCTTTCTGTAG+TGG - chr7_4:27120220-27120239 None:intergenic 40.0%
CTACAGAAAGAACTACATGC+AGG + chr7_4:27120220-27120239 Msa1147700:CDS 40.0%
TCAGAATGGAAGAATCTCCA+GGG - chr7_4:27120257-27120276 None:intergenic 40.0%
TTCAGAATGGAAGAATCTCC+AGG - chr7_4:27120258-27120277 None:intergenic 40.0%
TGGTGTATTTGTAACAGAGG+AGG + chr7_4:27120321-27120340 Msa1147700:intron 40.0%
GTATTTGTAACAGAGGAGGT+AGG + chr7_4:27120325-27120344 Msa1147700:intron 40.0%
GCTGTCATATACGTGGATAA+CGG + chr7_4:27120397-27120416 Msa1147700:CDS 40.0%
TTAAAGACCTCGACATTCCA+AGG + chr7_4:27120458-27120477 Msa1147700:CDS 40.0%
TAAAGACCTCGACATTCCAA+GGG + chr7_4:27120459-27120478 Msa1147700:CDS 40.0%
CAATTTCAATGTTGGTCCCT+TGG - chr7_4:27120478-27120497 None:intergenic 40.0%
! CTTTCGAATGGGTTTGTGAA+TGG + chr7_4:27120670-27120689 Msa1147700:three_prime_UTR 40.0%
AGCACAACACTTCTCATCGA+AGG + chr7_4:27113933-27113952 Msa1147700:intron 45.0%
TCACATGTCCTTTGTCGTGT+TGG - chr7_4:27113974-27113993 None:intergenic 45.0%
CGATTGCAATGTCAAGACCT+AGG + chr7_4:27114423-27114442 Msa1147700:CDS 45.0%
TTAGGTCCTGCAATTGTTGG+AGG + chr7_4:27114473-27114492 Msa1147700:CDS 45.0%
AATTGTTGGAGGCAGGGTTA+AGG + chr7_4:27114484-27114503 Msa1147700:CDS 45.0%
! GTTGGCTCATGTGCTAAACT+AGG + chr7_4:27114506-27114525 Msa1147700:CDS 45.0%
!! AAGGGCATTTATTGCTGGTG+TGG + chr7_4:27115387-27115406 Msa1147700:CDS 45.0%
GTGGCTGATGACAATGGATA+TGG + chr7_4:27115406-27115425 Msa1147700:CDS 45.0%
CTGATGACAATGGATATGGC+TGG + chr7_4:27115410-27115429 Msa1147700:CDS 45.0%
GCAGGAGCTGAAATTCTTGT+TGG + chr7_4:27115457-27115476 Msa1147700:CDS 45.0%
! CGTCAAATTTTCCACGTCGT+AGG - chr7_4:27115850-27115869 None:intergenic 45.0%
!! CAGGCAACTCTCCATTTTTC+AGG + chr7_4:27115951-27115970 Msa1147700:intron 45.0%
GTGTCATAGACTGCATCCAA+GGG - chr7_4:27116016-27116035 None:intergenic 45.0%
AGTGTCATAGACTGCATCCA+AGG - chr7_4:27116017-27116036 None:intergenic 45.0%
!! ACATCTTCTGGGACATCTTC+GGG - chr7_4:27116040-27116059 None:intergenic 45.0%
GCTATGCTGGAGCTTCAAAT+TGG + chr7_4:27116158-27116177 Msa1147700:CDS 45.0%
AGCTTCAAATTGGACTGTCC+AGG + chr7_4:27116168-27116187 Msa1147700:CDS 45.0%
! CAGGCTTGGTCAGAAATAAG+TGG - chr7_4:27117065-27117084 None:intergenic 45.0%
! ACTACGATAGTTTAAGGCGG+AGG + chr7_4:27117558-27117577 Msa1147700:intron 45.0%
! CTACGATAGTTTAAGGCGGA+GGG + chr7_4:27117559-27117578 Msa1147700:intron 45.0%
! CTTGTGCACTCACTTGCTAA+CGG + chr7_4:27117869-27117888 Msa1147700:CDS 45.0%
AGAGTAACTAGACGCAGACA+AGG - chr7_4:27118028-27118047 None:intergenic 45.0%
TGCCTTGGTTCATGATTGGA+AGG - chr7_4:27118074-27118093 None:intergenic 45.0%
! CTGTTCTCACTGCTCTGTTT+TGG + chr7_4:27118145-27118164 Msa1147700:intron 45.0%
GCTTCAGAGAGGATTATTCC+CGG + chr7_4:27118203-27118222 Msa1147700:CDS 45.0%
CTTCAGAGAGGATTATTCCC+GGG + chr7_4:27118204-27118223 Msa1147700:CDS 45.0%
TGCACGATATGCAGATATGG+TGG + chr7_4:27118296-27118315 Msa1147700:intron 45.0%
GCACGATATGCAGATATGGT+GGG + chr7_4:27118297-27118316 Msa1147700:intron 45.0%
CACGATATGCAGATATGGTG+GGG + chr7_4:27118298-27118317 Msa1147700:intron 45.0%
ACGATATGCAGATATGGTGG+GGG + chr7_4:27118299-27118318 Msa1147700:intron 45.0%
GAGTTCTGCTAAAGCTGCTT+TGG + chr7_4:27118325-27118344 Msa1147700:CDS 45.0%
AAAATCCAAAGGGGAAGAGG+GGG - chr7_4:27118447-27118466 None:intergenic 45.0%
AGAGATATGGGGACAAGTCT+TGG + chr7_4:27118965-27118984 Msa1147700:intron 45.0%
GGACAAGTCTTGGAAATGCT+TGG + chr7_4:27118975-27118994 Msa1147700:intron 45.0%
ATGCTTGGTTTCTGCTCAAG+TGG + chr7_4:27118990-27119009 Msa1147700:intron 45.0%
! GTCTCATGTTTTCAGTCGCT+TGG + chr7_4:27119104-27119123 Msa1147700:intron 45.0%
GAGTAGGGAGGATGAAATGT+AGG + chr7_4:27119178-27119197 Msa1147700:intron 45.0%
TAGGGGAGATTAGACCAAGA+GGG + chr7_4:27119513-27119532 Msa1147700:intron 45.0%
CAAGCAAAAACCCAACTTGG+AGG - chr7_4:27119661-27119680 None:intergenic 45.0%
!! AATGGAAGAGTATCGGTGTC+CGG + chr7_4:27119735-27119754 Msa1147700:intron 45.0%
TTTCAATGGCTAGGTCCACT+TGG + chr7_4:27120130-27120149 Msa1147700:intron 45.0%
AACCAATTGCTTTCGCAGCA+CGG - chr7_4:27120159-27120178 None:intergenic 45.0%
GTATATGACAGCACCAGTGA+TGG - chr7_4:27120389-27120408 None:intergenic 45.0%
!! GATAACGGACTAAACGCCAT+GGG + chr7_4:27120412-27120431 Msa1147700:CDS 45.0%
!! GAAGAATCCGGATTTGGTGT+TGG - chr7_4:27120527-27120546 None:intergenic 45.0%
TTGGAGTCCTGACTTTCGAA+TGG + chr7_4:27120658-27120677 Msa1147700:three_prime_UTR 45.0%
TGGAGTCCTGACTTTCGAAT+GGG + chr7_4:27120659-27120678 Msa1147700:three_prime_UTR 45.0%
CACAAACCCATTCGAAAGTC+AGG - chr7_4:27120668-27120687 None:intergenic 45.0%
!!! TTTTTTTTTTTTTTTTGAAA+AGG - chr7_4:27113867-27113886 None:intergenic 5.0%
!! TAAATTTCAAATAATAAATT+AGG - chr7_4:27114257-27114276 None:intergenic 5.0%
!! AAATTAATTTAAAAATCTAT+TGG - chr7_4:27116279-27116298 None:intergenic 5.0%
!!! ATCTTTATAAATATTTTTAT+AGG - chr7_4:27117535-27117554 None:intergenic 5.0%
CATGTCCTTTGTCGTGTTGG+CGG - chr7_4:27113971-27113990 None:intergenic 50.0%
CTGACACAAACACGAACACC+AGG - chr7_4:27114057-27114076 None:intergenic 50.0%
TCCTGCAATTGTTGGAGGCA+GGG + chr7_4:27114478-27114497 Msa1147700:CDS 50.0%
GCAAAATCTCTTGCAGAGGC+AGG + chr7_4:27115439-27115458 Msa1147700:CDS 50.0%
TTTGAGTCTAGCCTACGACG+TGG + chr7_4:27115836-27115855 Msa1147700:CDS 50.0%
AAATGTGCATGCAGGTGTCC+TGG + chr7_4:27116911-27116930 Msa1147700:intron 50.0%
TTGTCCGAGACATCTCGGAA+AGG + chr7_4:27117991-27118010 Msa1147700:CDS 50.0%
!!! CAGGTGCTTGCTTTTGAAGC+TGG + chr7_4:27118483-27118502 Msa1147700:intron 50.0%
ACTATGGGATTCGAGTAGGG+AGG + chr7_4:27119166-27119185 Msa1147700:intron 50.0%
GTAGGGGAGATTAGACCAAG+AGG + chr7_4:27119512-27119531 Msa1147700:intron 50.0%
CCAGTGATGGCTGATGCTAA+GGG - chr7_4:27120376-27120395 None:intergenic 50.0%
ACCAGTGATGGCTGATGCTA+AGG - chr7_4:27120377-27120396 None:intergenic 50.0%
!! CACTGGTGCTGTCATATACG+TGG + chr7_4:27120390-27120409 Msa1147700:CDS 50.0%
!! GGATAACGGACTAAACGCCA+TGG + chr7_4:27120411-27120430 Msa1147700:CDS 50.0%
! TTTGTCGTGTTGGCGGACAC+TGG - chr7_4:27113964-27113983 None:intergenic 55.0%
AGTGTCCGCCAACACGACAA+AGG + chr7_4:27113963-27113982 Msa1147700:intron 55.0%
! TCTGTCAGTGTCGTTGTGCC+TGG + chr7_4:27114036-27114055 Msa1147700:intron 55.0%
GTCCTGCAATTGTTGGAGGC+AGG + chr7_4:27114477-27114496 Msa1147700:CDS 55.0%
ACCCTGCCTCCAACAATTGC+AGG - chr7_4:27114482-27114501 None:intergenic 55.0%
GTTGGAGGCAGGGTTAAGGT+TGG + chr7_4:27114488-27114507 Msa1147700:CDS 55.0%
ATCGGCAAAACCCTTCCAGC+TGG + chr7_4:27114547-27114566 Msa1147700:CDS 55.0%
GATGTTGAGGCCAGCTGGAA+GGG - chr7_4:27114560-27114579 None:intergenic 55.0%
GCTGGTGTGGCTGATGACAA+TGG + chr7_4:27115400-27115419 Msa1147700:CDS 55.0%
! CTCACTTGCTAACGGACCAG+AGG + chr7_4:27117877-27117896 Msa1147700:CDS 55.0%
TATCGGTCTCAGGTACGTGC+CGG - chr7_4:27119757-27119776 None:intergenic 55.0%
AGCCGTGCTGCGAAAGCAAT+TGG + chr7_4:27120154-27120173 Msa1147700:CDS 55.0%
!! AGGCAACGCTGCTGCTTTCT+TGG + chr7_4:27120345-27120364 Msa1147700:CDS 55.0%
CCCTTAGCATCAGCCATCAC+TGG + chr7_4:27120373-27120392 Msa1147700:CDS 55.0%
GGACTAAACGCCATGGGAGT+TGG + chr7_4:27120418-27120437 Msa1147700:CDS 55.0%
!! ACTGTCGACTCCAACTCCCA+TGG - chr7_4:27120431-27120450 None:intergenic 55.0%
GTTGGTCCCTTGGAATGTCG+AGG - chr7_4:27120468-27120487 None:intergenic 55.0%
CGATGTTGAGGCCAGCTGGA+AGG - chr7_4:27114561-27114580 None:intergenic 60.0%
TACGCGATGTTGAGGCCAGC+TGG - chr7_4:27114565-27114584 None:intergenic 60.0%
! CATAGAGGAGCGCATCTCGC+TGG + chr7_4:27116424-27116443 Msa1147700:intron 60.0%
AAGGGGAAGAGGGGGAGGTT+AGG - chr7_4:27118439-27118458 None:intergenic 60.0%
AACCTCCCCCTCTTCCCCTT+TGG + chr7_4:27118439-27118458 Msa1147700:intron 60.0%
ATCCAAAGGGGAAGAGGGGG+AGG - chr7_4:27118444-27118463 None:intergenic 60.0%
TTCGCAGCACGGCTTCCAAG+TGG - chr7_4:27120148-27120167 None:intergenic 60.0%
GGGAGTTGGAGTCGACAGTC+CGG + chr7_4:27120432-27120451 Msa1147700:CDS 60.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 27113288 27120799 27113288 ID=Msa1147700;Name=Msa1147700
chr7_4 mRNA 27113288 27120799 27113288 ID=Msa1147700-mRNA-1;Parent=Msa1147700;Name=Msa1147700-mRNA-1;_AED=0.14;_eAED=0.14;_QI=229|1|1|1|0.91|0.84|13|307|391
chr7_4 exon 27113288 27113479 27113288 ID=Msa1147700-mRNA-1:exon:6654;Parent=Msa1147700-mRNA-1
chr7_4 exon 27114361 27114671 27114361 ID=Msa1147700-mRNA-1:exon:6655;Parent=Msa1147700-mRNA-1
chr7_4 exon 27115383 27115492 27115383 ID=Msa1147700-mRNA-1:exon:6656;Parent=Msa1147700-mRNA-1
chr7_4 exon 27115824 27115879 27115824 ID=Msa1147700-mRNA-1:exon:6657;Parent=Msa1147700-mRNA-1
chr7_4 exon 27115973 27116057 27115973 ID=Msa1147700-mRNA-1:exon:6658;Parent=Msa1147700-mRNA-1
chr7_4 exon 27116142 27116189 27116142 ID=Msa1147700-mRNA-1:exon:6659;Parent=Msa1147700-mRNA-1
chr7_4 exon 27117824 27117898 27117824 ID=Msa1147700-mRNA-1:exon:6660;Parent=Msa1147700-mRNA-1
chr7_4 exon 27117979 27118090 27117979 ID=Msa1147700-mRNA-1:exon:6661;Parent=Msa1147700-mRNA-1
chr7_4 exon 27118174 27118225 27118174 ID=Msa1147700-mRNA-1:exon:6662;Parent=Msa1147700-mRNA-1
chr7_4 exon 27118310 27118361 27118310 ID=Msa1147700-mRNA-1:exon:6663;Parent=Msa1147700-mRNA-1
chr7_4 exon 27118486 27118543 27118486 ID=Msa1147700-mRNA-1:exon:6664;Parent=Msa1147700-mRNA-1
chr7_4 exon 27120143 27120241 27120143 ID=Msa1147700-mRNA-1:exon:6665;Parent=Msa1147700-mRNA-1
chr7_4 exon 27120338 27120799 27120338 ID=Msa1147700-mRNA-1:exon:6666;Parent=Msa1147700-mRNA-1
chr7_4 five_prime_UTR 27113288 27113479 27113288 ID=Msa1147700-mRNA-1:five_prime_utr;Parent=Msa1147700-mRNA-1
chr7_4 five_prime_UTR 27114361 27114397 27114361 ID=Msa1147700-mRNA-1:five_prime_utr;Parent=Msa1147700-mRNA-1
chr7_4 CDS 27114398 27114671 27114398 ID=Msa1147700-mRNA-1:cds;Parent=Msa1147700-mRNA-1
chr7_4 CDS 27115383 27115492 27115383 ID=Msa1147700-mRNA-1:cds;Parent=Msa1147700-mRNA-1
chr7_4 CDS 27115824 27115879 27115824 ID=Msa1147700-mRNA-1:cds;Parent=Msa1147700-mRNA-1
chr7_4 CDS 27115973 27116057 27115973 ID=Msa1147700-mRNA-1:cds;Parent=Msa1147700-mRNA-1
chr7_4 CDS 27116142 27116189 27116142 ID=Msa1147700-mRNA-1:cds;Parent=Msa1147700-mRNA-1
chr7_4 CDS 27117824 27117898 27117824 ID=Msa1147700-mRNA-1:cds;Parent=Msa1147700-mRNA-1
chr7_4 CDS 27117979 27118090 27117979 ID=Msa1147700-mRNA-1:cds;Parent=Msa1147700-mRNA-1
chr7_4 CDS 27118174 27118225 27118174 ID=Msa1147700-mRNA-1:cds;Parent=Msa1147700-mRNA-1
chr7_4 CDS 27118310 27118361 27118310 ID=Msa1147700-mRNA-1:cds;Parent=Msa1147700-mRNA-1
chr7_4 CDS 27118486 27118543 27118486 ID=Msa1147700-mRNA-1:cds;Parent=Msa1147700-mRNA-1
chr7_4 CDS 27120143 27120241 27120143 ID=Msa1147700-mRNA-1:cds;Parent=Msa1147700-mRNA-1
chr7_4 CDS 27120338 27120492 27120338 ID=Msa1147700-mRNA-1:cds;Parent=Msa1147700-mRNA-1
chr7_4 three_prime_UTR 27120493 27120799 27120493 ID=Msa1147700-mRNA-1:three_prime_utr;Parent=Msa1147700-mRNA-1
Gene Sequence

>Msa1147700

ATGGCAACAACAGTTTCTAATATGTCGATTGCAATGTCAAGACCTAGGATTACCCCATCACAAAAGTTTTCAAATTTAGGTCCTGCAATTGTTGGAGGCAGGGTTAAGGTTGGCTCATGTGCTAAACTAGGAAGTGTTTGTCATGTTTCATCGGCAAAACCCTTCCAGCTGGCCTCAACATCGCGTACCTTAAAATTCGACAAAATTGTAACAAAGGCAATGGCCGAGTCCAGTTCAAACAAGCAAGCTACAGGATTGCCAATTGATTTGAGAGGTAAAAGGGCATTTATTGCTGGTGTGGCTGATGACAATGGATATGGCTGGGCAATAGCAAAATCTCTTGCAGAGGCAGGAGCTGAAATTCTTGTTGGCACATGGGTACCTGCTCTAAATATATTTGAGTCTAGCCTACGACGTGGAAAATTTGACGAATCACGCAAGTTACAAGATGGATCATTGATGGAAATTACTAAAGTGTATCCCTTGGATGCAGTCTATGACACTCCCGAAGATGTCCCAGAAGATGTAAAAGCTAATAAGCGCTATGCTGGAGCTTCAAATTGGACTGTCCAGGAAGTTGTTGAATCTGTTAAGAATGATTTCGGCACTATTGACATACTTGTGCACTCACTTGCTAACGGACCAGAGGTCAGCAAACTATTGTCCGAGACATCTCGGAAAGGATATCTAGCTGCCTTGTCTGCGTCTAGTTACTCTTATATTTCTTTACTAAAACACTTCCTTCCAATCATGAACCAAGGTGGATCCTCGCTCTCTCTAACATATATTGCTTCAGAGAGGATTATTCCCGGATATGGTGGGGGTATGAGTTCTGCTAAAGCTGCTTTGGAAAGTGATACAAGAGTGCTTGCTTTTGAAGCTGGTAGAAAGAAAAGAATCAGAGTTAATACTATATCTGCAGGTCCACTTGGAAGCCGTGCTGCGAAAGCAATTGGTTTCATTGACATGATGATTGATTATTCATTTACCAATGCACCACTACAGAAAGAACTACATGCAGAGGAGGTAGGCAACGCTGCTGCTTTCTTGGCATCACCCTTAGCATCAGCCATCACTGGTGCTGTCATATACGTGGATAACGGACTAAACGCCATGGGAGTTGGAGTCGACAGTCCGGTATTTAAAGACCTCGACATTCCAAGGGACCAACATTGA

Protein sequence

>Msa1147700

MATTVSNMSIAMSRPRITPSQKFSNLGPAIVGGRVKVGSCAKLGSVCHVSSAKPFQLASTSRTLKFDKIVTKAMAESSSNKQATGLPIDLRGKRAFIAGVADDNGYGWAIAKSLAEAGAEILVGTWVPALNIFESSLRRGKFDESRKLQDGSLMEITKVYPLDAVYDTPEDVPEDVKANKRYAGASNWTVQEVVESVKNDFGTIDILVHSLANGPEVSKLLSETSRKGYLAALSASSYSYISLLKHFLPIMNQGGSSLSLTYIASERIIPGYGGGMSSAKAALESDTRVLAFEAGRKKRIRVNTISAGPLGSRAAKAIGFIDMMIDYSFTNAPLQKELHAEEVGNAAAFLASPLASAITGAVIYVDNGLNAMGVGVDSPVFKDLDIPRDQH*