AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1278160

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1278160 MtrunA17_Chr8g0347751 91.645 383 18 2 1 369 6 388 0.0 708
Msa1278160 MtrunA17_Chr7g0275291 61.979 384 111 5 6 368 11 380 1.86e-170 480
Msa1278160 MtrunA17_Chr7g0254461 41.039 385 194 10 4 363 15 391 3.00e-93 284
Msa1278160 MtrunA17_Chr1g0159971 40.691 376 194 6 9 363 24 391 2.45e-90 277
Msa1278160 MtrunA17_Chr8g0381581 39.529 382 202 4 1 361 12 385 5.60e-90 276
Msa1278160 MtrunA17_Chr7g0226941 39.410 373 198 7 11 363 14 378 7.45e-90 275
Msa1278160 MtrunA17_Chr1g0159991 40.896 357 183 4 27 363 32 380 5.37e-88 270
Msa1278160 MtrunA17_Chr7g0226931 39.637 386 199 8 10 365 19 400 1.42e-86 267
Msa1278160 MtrunA17_Chr1g0160101 39.426 383 201 6 9 368 18 392 9.19e-86 265
Msa1278160 MtrunA17_Chr7g0226911 37.755 392 203 9 6 365 4 386 1.88e-83 259
Msa1278160 MtrunA17_Chr1g0160031 39.037 374 195 6 10 363 21 381 8.09e-83 257
Msa1278160 MtrunA17_Chr1g0160011 39.037 374 196 6 10 363 21 382 1.69e-81 254
Msa1278160 MtrunA17_Chr1g0159981 37.433 374 206 4 10 363 25 390 7.66e-80 249
Msa1278160 MtrunA17_Chr6g0450701 35.467 375 217 5 6 363 12 378 1.93e-77 243
Msa1278160 MtrunA17_Chr7g0273101 38.936 357 177 9 28 357 26 368 1.70e-72 230
Msa1278160 MtrunA17_Chr6g0450711 34.916 358 210 5 21 363 112 461 3.90e-70 226
Msa1278160 MtrunA17_Chr8g0352901 37.079 356 198 7 27 363 24 372 4.68e-70 224
Msa1278160 MtrunA17_Chr6g0450731 36.438 365 208 7 9 363 11 361 1.79e-69 222
Msa1278160 MtrunA17_Chr6g0450721 33.983 359 223 4 9 363 11 359 9.52e-69 220
Msa1278160 MtrunA17_Chr1g0191461 37.158 366 189 11 13 354 18 366 6.64e-68 218
Msa1278160 MtrunA17_Chr7g0271551 38.824 340 172 9 32 355 37 356 2.41e-65 211
Msa1278160 MtrunA17_Chr2g0283531 38.202 356 173 12 29 356 29 365 1.01e-60 199
Msa1278160 MtrunA17_Chr2g0283501 34.232 371 199 10 14 357 15 367 5.52e-57 190
Msa1278160 MtrunA17_Chr2g0283481 36.757 370 186 13 22 366 43 389 5.35e-56 188
Msa1278160 MtrunA17_Chr2g0317271 35.422 367 203 13 4 355 2 349 4.21e-55 184
Msa1278160 MtrunA17_Chr2g0301581 35.311 354 198 10 15 356 18 352 2.02e-54 183
Msa1278160 MtrunA17_Chr0c01g0489581 34.239 368 210 12 1 355 1 349 3.37e-54 182
Msa1278160 MtrunA17_Chr2g0317261 35.422 367 203 13 4 355 2 349 3.71e-54 182
Msa1278160 MtrunA17_Chr2g0301541 35.311 354 198 10 15 356 18 352 4.88e-54 182
Msa1278160 MtrunA17_Chr0c01g0489571 34.239 368 210 12 1 355 1 349 1.57e-53 181
Msa1278160 MtrunA17_Chr3g0104821 33.714 350 196 10 29 355 42 378 2.76e-51 175
Msa1278160 MtrunA17_Chr3g0112821 33.156 377 209 13 1 355 1 356 7.42e-51 174
Msa1278160 MtrunA17_Chr2g0283511 34.270 356 187 12 36 363 36 372 7.09e-50 172
Msa1278160 MtrunA17_Chr3g0096551 34.232 371 193 12 20 355 18 372 1.40e-48 168
Msa1278160 MtrunA17_Chr3g0112691 33.875 369 208 12 7 355 7 359 1.61e-48 167
Msa1278160 MtrunA17_Chr3g0093031 32.713 376 205 13 7 355 7 361 3.49e-48 167
Msa1278160 MtrunA17_Chr8g0339251 33.022 321 175 9 27 328 24 323 8.90e-45 157
Msa1278160 MtrunA17_Chr4g0057991 30.027 373 204 13 18 357 21 369 2.57e-43 154
Msa1278160 MtrunA17_Chr8g0344941 31.903 373 191 14 6 347 15 355 7.89e-38 139
Msa1278160 MtrunA17_Chr2g0301551 31.271 291 172 8 77 357 37 309 2.42e-35 131
Msa1278160 MtrunA17_Chr2g0301571 31.164 292 171 9 77 357 37 309 2.96e-34 128
Msa1278160 MtrunA17_Chr2g0301591 32.667 300 159 9 15 303 18 285 3.92e-34 127
Msa1278160 MtrunA17_Chr5g0396511 29.143 350 201 14 33 360 48 372 4.09e-31 121
Msa1278160 MtrunA17_Chr8g0344931 30.966 352 197 9 32 365 38 361 9.87e-31 120
Msa1278160 MtrunA17_Chr2g0283541 36.082 194 109 3 177 356 99 291 3.03e-30 117
Msa1278160 MtrunA17_Chr3g0131321 29.973 377 200 13 9 350 6 353 8.84e-30 118
Msa1278160 MtrunA17_Chr2g0301641 28.852 357 202 14 32 362 44 374 3.70e-29 116
Msa1278160 MtrunA17_Chr5g0432101 28.827 392 208 17 7 363 7 362 1.73e-28 114
Msa1278160 MtrunA17_Chr2g0294301 28.457 376 213 15 3 354 13 356 1.80e-28 114
Msa1278160 MtrunA17_Chr3g0104831 29.137 278 166 8 96 355 33 297 2.99e-28 112
Msa1278160 MtrunA17_Chr8g0349321 26.453 344 202 8 32 353 38 352 3.76e-27 110
Msa1278160 MtrunA17_Chr2g0330781 28.242 347 199 11 31 353 31 351 6.55e-27 109
Msa1278160 MtrunA17_Chr7g0275011 26.667 360 217 12 14 351 17 351 1.19e-26 108
Msa1278160 MtrunA17_Chr8g0374101 27.500 360 212 13 33 365 39 376 1.82e-26 108
Msa1278160 MtrunA17_Chr2g0285061 25.627 359 214 11 33 365 34 365 2.37e-26 108
Msa1278160 MtrunA17_Chr5g0444401 27.078 373 216 12 7 351 3 347 2.39e-26 108
Msa1278160 MtrunA17_Chr3g0086641 26.741 359 209 13 33 365 40 370 2.75e-26 108
Msa1278160 MtrunA17_Chr1g0189931 27.733 375 221 14 1 351 1 349 3.33e-26 107
Msa1278160 MtrunA17_Chr8g0349341 26.627 338 205 8 32 351 38 350 5.64e-26 107
Msa1278160 MtrunA17_Chr3g0077571 26.016 369 232 11 14 365 13 357 7.95e-26 106
Msa1278160 MtrunA17_Chr8g0341001 27.248 367 215 12 8 348 7 347 1.32e-25 105
Msa1278160 MtrunA17_Chr1g0189901 28.406 345 198 13 30 351 30 348 1.46e-25 105
Msa1278160 MtrunA17_Chr8g0380041 26.506 332 202 9 33 345 33 341 2.15e-25 105
Msa1278160 MtrunA17_Chr1g0156891 27.507 349 200 13 31 354 43 363 3.67e-25 104
Msa1278160 MtrunA17_Chr7g0275021 28.242 347 196 14 30 351 33 351 4.96e-25 104
Msa1278160 MtrunA17_Chr5g0438641 25.937 347 208 10 31 354 32 352 9.70e-25 103
Msa1278160 MtrunA17_Chr2g0320671 26.891 357 190 10 31 353 30 349 1.41e-24 103
Msa1278160 MtrunA17_Chr1g0178931 25.610 328 193 9 30 339 36 330 1.58e-24 102
Msa1278160 MtrunA17_Chr4g0017431 26.331 357 217 14 31 365 31 363 2.15e-24 102
Msa1278160 MtrunA17_Chr8g0349331 26.176 340 178 6 32 353 36 320 2.98e-24 101
Msa1278160 MtrunA17_Chr4g0068441 26.301 346 205 11 33 354 37 356 5.51e-24 101
Msa1278160 MtrunA17_Chr8g0371481 25.895 363 221 11 15 354 25 362 1.03e-23 100
Msa1278160 MtrunA17_Chr3g0099161 26.590 346 201 11 31 350 92 410 2.07e-23 100
Msa1278160 MtrunA17_Chr7g0275001 26.039 361 218 12 13 351 10 343 2.34e-23 99.8
Msa1278160 MtrunA17_Chr2g0294311 24.607 382 224 16 8 354 9 361 6.88e-23 98.6
Msa1278160 MtrunA17_Chr3g0099151 26.963 382 211 16 1 350 61 406 8.00e-23 99.0
Msa1278160 MtrunA17_Chr1g0178941 25.148 338 190 11 30 339 39 341 9.07e-23 98.2
Msa1278160 MtrunA17_Chr8g0349301 27.174 276 170 7 32 302 38 287 1.13e-22 97.1
Msa1278160 MtrunA17_Chr3g0120861 25.797 345 209 11 32 354 39 358 1.74e-22 97.4
Msa1278160 MtrunA17_Chr3g0099231 25.852 352 195 13 31 350 28 345 3.50e-22 96.7
Msa1278160 MtrunA17_Chr7g0266061 26.781 351 195 15 15 339 22 336 7.92e-22 95.5
Msa1278160 MtrunA17_Chr1g0156911 27.219 338 198 13 29 344 35 346 2.39e-21 94.0
Msa1278160 MtrunA17_Chr5g0405821 25.073 343 210 11 35 354 47 365 3.39e-21 93.6
Msa1278160 MtrunA17_Chr2g0283191 26.686 341 192 15 31 339 38 352 3.49e-21 93.6
Msa1278160 MtrunA17_Chr3g0077581 25.978 358 215 10 33 365 38 370 6.93e-21 92.8
Msa1278160 MtrunA17_Chr4g0046151 26.053 380 214 17 9 350 16 366 1.07e-20 92.4
Msa1278160 MtrunA17_Chr3g0092131 25.205 365 222 14 7 348 1 337 1.30e-20 92.0
Msa1278160 MtrunA17_Chr3g0085881 24.085 328 203 9 32 344 34 330 1.42e-20 91.7
Msa1278160 MtrunA17_Chr1g0156921 26.100 341 203 11 31 348 42 356 1.66e-20 91.7
Msa1278160 MtrunA17_Chr5g0434621 24.405 336 199 12 35 345 29 334 1.83e-20 91.3
Msa1278160 MtrunA17_Chr5g0438621 23.770 366 227 12 11 348 3 344 2.11e-20 91.3
Msa1278160 MtrunA17_Chr8g0371471 24.793 363 226 11 14 354 24 361 2.19e-20 91.3
Msa1278160 MtrunA17_Chr3g0105401 25.073 343 207 12 31 349 28 344 2.46e-20 90.9
Msa1278160 MtrunA17_Chr5g0420811 24.633 341 209 12 21 344 23 332 3.19e-20 90.5
Msa1278160 MtrunA17_Chr1g0182811 25.753 365 216 11 14 351 16 352 4.47e-20 90.5
Msa1278160 MtrunA17_Chr4g0027521 25.581 344 204 11 31 348 27 344 4.65e-20 90.1
Msa1278160 MtrunA17_Chr5g0440501 30.332 211 125 8 171 362 41 248 6.62e-20 88.2
Msa1278160 MtrunA17_Chr1g0189891 26.705 352 225 15 13 351 10 341 9.01e-20 89.4
Msa1278160 MtrunA17_Chr3g0085231 23.913 368 238 10 9 362 8 347 2.01e-19 88.6
Msa1278160 MtrunA17_Chr7g0274991 24.119 369 231 12 5 351 9 350 2.07e-19 88.6
Msa1278160 MtrunA17_Chr8g0371491 24.929 353 204 10 31 354 36 356 5.34e-19 87.4
Msa1278160 MtrunA17_Chr3g0104801 52.222 90 36 3 29 112 42 130 9.67e-19 83.2
Msa1278160 MtrunA17_Chr2g0301561 29.114 237 140 8 77 303 37 255 1.26e-18 84.3
Msa1278160 MtrunA17_Chr5g0438631 23.529 340 214 11 31 348 28 343 1.65e-18 85.9
Msa1278160 MtrunA17_Chr7g0215961 25.656 343 197 15 30 351 32 337 2.70e-18 85.1
Msa1278160 MtrunA17_Chr4g0060811 25.519 337 206 10 33 348 29 341 2.89e-18 85.1
Msa1278160 MtrunA17_Chr5g0437421 25.146 342 218 13 31 352 32 355 2.96e-18 85.1
Msa1278160 MtrunA17_Chr6g0457921 25.513 341 204 12 35 351 33 347 6.24e-18 84.3
Msa1278160 MtrunA17_Chr4g0008851 24.176 364 223 13 13 351 16 351 1.94e-17 82.8
Msa1278160 MtrunA17_Chr2g0285001 25.225 333 200 15 32 344 34 337 2.79e-17 82.4
Msa1278160 MtrunA17_Chr1g0156901 25.146 342 204 14 31 348 50 363 1.04e-16 80.5
Msa1278160 MtrunA17_Chr5g0405831 23.324 343 215 12 35 354 47 364 1.80e-16 80.1
Msa1278160 MtrunA17_Chr6g0455661 24.664 223 148 4 157 365 256 472 2.05e-15 77.4
Msa1278160 MtrunA17_Chr7g0229581 30.667 150 90 2 213 353 8 152 4.27e-15 72.4
Msa1278160 MtrunA17_Chr2g0284991 22.284 359 219 14 14 344 10 336 6.49e-15 75.5
Msa1278160 MtrunA17_Chr3g0142941 25.291 344 201 13 31 348 47 360 9.07e-15 74.7
Msa1278160 MtrunA17_Chr6g0459921 24.528 212 142 3 166 365 156 361 1.37e-14 74.3
Msa1278160 MtrunA17_Chr4g0027571 30.405 148 89 2 210 348 72 214 3.97e-14 71.2
Msa1278160 MtrunA17_Chr8g0370951 24.665 373 222 14 9 351 10 353 1.26e-13 71.6
Msa1278160 MtrunA17_Chr2g0284951 23.145 337 197 11 32 344 34 332 1.99e-13 70.9
Msa1278160 MtrunA17_Chr7g0273111 56.604 53 22 1 28 79 32 84 3.05e-11 59.7
Msa1278160 MtrunA17_Chr3g0106911 34.416 154 77 8 56 206 7 139 3.90e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1278160 AT4G01130.1 59.200 375 125 6 10 363 13 380 3.87e-149 426
Msa1278160 AT4G01130.2 58.805 318 116 5 10 327 13 315 4.58e-126 366
Msa1278160 AT4G01130.3 57.143 301 101 6 84 363 1 294 1.01e-109 323
Msa1278160 AT5G14450.1 39.535 387 205 6 1 366 11 389 3.99e-90 276
Msa1278160 AT3G26430.1 39.314 379 200 5 9 363 6 378 7.70e-90 275
Msa1278160 AT1G67830.1 38.950 362 184 5 27 366 26 372 2.06e-86 266
Msa1278160 AT3G27950.1 38.798 366 190 8 20 365 21 372 1.29e-75 238
Msa1278160 AT1G56670.1 38.617 347 182 8 32 363 41 371 1.67e-71 228
Msa1278160 AT1G54790.3 36.141 368 201 9 14 357 14 371 3.08e-67 217
Msa1278160 AT1G09390.1 37.069 348 186 8 32 363 38 368 5.37e-67 216
Msa1278160 AT3G05180.1 36.182 351 189 8 28 354 33 372 2.18e-61 202
Msa1278160 AT1G54790.1 33.065 372 211 9 9 357 14 370 5.36e-60 198
Msa1278160 AT3G62280.1 35.714 350 192 8 21 355 26 357 3.71e-59 196
Msa1278160 AT1G31550.2 35.310 371 184 11 20 357 24 371 7.84e-57 190
Msa1278160 AT1G28600.1 34.293 382 193 14 9 357 10 366 1.01e-56 190
Msa1278160 AT1G28580.1 34.375 384 194 12 10 357 12 373 1.40e-56 189
Msa1278160 AT1G28590.1 32.895 380 204 9 8 357 14 372 1.71e-56 190
Msa1278160 AT1G54790.2 30.905 398 211 9 9 357 14 396 3.28e-56 189
Msa1278160 AT1G31550.1 35.326 368 185 11 20 357 24 368 4.42e-56 188
Msa1278160 AT1G28640.1 34.278 388 200 11 3 357 6 371 1.82e-55 187
Msa1278160 AT5G45910.1 34.737 380 196 11 14 357 8 371 8.15e-55 184
Msa1278160 AT1G56670.2 38.828 273 149 5 32 302 41 297 8.42e-54 180
Msa1278160 AT1G28650.1 34.043 376 205 9 9 357 14 373 8.96e-54 182
Msa1278160 AT1G28670.1 33.246 382 201 11 9 357 12 372 1.99e-51 176
Msa1278160 AT1G28610.2 33.248 391 209 15 2 363 3 370 5.75e-51 175
Msa1278160 AT2G27360.1 34.043 376 195 11 16 357 14 370 8.80e-51 174
Msa1278160 AT1G28660.1 35.279 377 199 13 9 357 12 371 7.95e-50 172
Msa1278160 AT1G28660.2 34.748 377 200 13 9 357 12 370 5.69e-49 169
Msa1278160 AT1G28570.1 31.234 381 218 11 6 357 5 370 7.57e-49 169
Msa1278160 AT3G62280.2 35.870 276 157 5 21 294 26 283 7.73e-45 156
Msa1278160 AT3G48460.1 30.623 369 195 12 29 362 36 378 2.88e-43 154
Msa1278160 AT1G28580.2 32.353 306 167 8 74 357 5 292 2.33e-40 145
Msa1278160 AT5G40990.1 28.682 387 210 13 11 366 23 374 2.84e-32 125
Msa1278160 AT1G53920.1 28.035 346 194 11 31 350 48 364 5.13e-31 121
Msa1278160 AT5G08460.1 26.486 370 225 10 9 354 27 373 2.53e-29 117
Msa1278160 AT3G14225.1 28.857 350 194 11 31 350 37 361 3.57e-28 114
Msa1278160 AT5G15720.1 29.204 339 185 11 33 344 32 342 7.48e-28 112
Msa1278160 AT1G28570.3 31.527 203 120 3 172 357 7 207 1.09e-27 108
Msa1278160 AT3G14225.2 28.324 346 197 11 31 350 37 357 1.28e-27 112
Msa1278160 AT5G03980.1 27.500 360 193 13 10 353 9 316 2.82e-27 110
Msa1278160 AT1G28570.2 31.527 203 120 3 172 357 98 298 3.76e-27 109
Msa1278160 AT4G10950.2 27.616 344 206 12 31 354 71 391 5.01e-27 111
Msa1278160 AT1G53940.2 27.500 360 211 11 32 365 40 375 6.31e-27 110
Msa1278160 AT2G23540.1 27.072 362 211 11 33 365 50 387 1.12e-26 109
Msa1278160 AT3G50400.1 27.136 398 233 14 1 365 1 374 1.33e-26 109
Msa1278160 AT4G26790.1 27.401 354 205 12 25 353 22 348 2.23e-26 108
Msa1278160 AT4G26790.2 27.401 354 205 12 25 353 22 348 2.23e-26 108
Msa1278160 AT1G53990.1 27.487 382 214 14 11 366 21 365 6.06e-26 107
Msa1278160 AT2G19060.1 27.378 347 199 13 33 359 32 345 1.51e-25 105
Msa1278160 AT1G29670.1 26.554 354 215 11 33 365 34 363 3.35e-25 105
Msa1278160 AT1G29670.2 26.836 354 214 11 33 365 102 431 6.98e-25 105
Msa1278160 AT1G06990.1 27.326 344 200 11 29 348 35 352 8.16e-25 104
Msa1278160 AT1G29660.1 26.870 361 203 11 33 369 34 357 1.44e-24 103
Msa1278160 AT5G41890.1 26.854 391 223 15 11 365 12 375 2.90e-24 102
Msa1278160 AT5G22810.1 28.818 347 199 12 31 353 34 356 4.71e-24 102
Msa1278160 AT5G03820.1 27.027 333 204 10 35 348 37 349 9.80e-24 101
Msa1278160 AT4G10950.1 26.453 344 206 12 31 354 71 387 1.02e-23 101
Msa1278160 AT1G75930.1 28.329 353 216 12 9 348 7 335 1.05e-23 100
Msa1278160 AT1G71120.1 25.648 347 210 9 25 351 25 343 1.10e-23 101
Msa1278160 AT1G71691.2 26.724 348 190 10 32 350 56 367 1.29e-23 101
Msa1278160 AT5G18430.1 25.843 356 217 10 19 351 16 347 1.35e-23 100
Msa1278160 AT5G03820.2 27.108 332 203 10 36 348 66 377 1.69e-23 100
Msa1278160 AT5G33370.1 25.135 370 230 10 4 351 3 347 2.12e-23 100
Msa1278160 AT2G19010.1 28.000 350 183 14 33 355 32 339 4.51e-23 99.0
Msa1278160 AT2G19010.2 27.429 350 185 12 33 355 62 369 5.71e-23 99.4
Msa1278160 AT1G75920.2 28.947 342 188 15 29 348 27 335 7.46e-23 98.6
Msa1278160 AT3G04290.1 25.479 365 222 13 9 351 10 346 7.72e-23 98.6
Msa1278160 AT5G03810.1 25.526 333 208 9 35 348 34 345 9.10e-23 98.2
Msa1278160 AT2G04570.1 25.410 366 220 12 19 358 12 350 1.58e-22 97.8
Msa1278160 AT1G53940.1 28.269 283 168 8 31 302 39 297 2.52e-22 96.3
Msa1278160 AT2G42990.1 25.141 354 216 11 13 344 12 338 3.96e-22 96.7
Msa1278160 AT3G16370.1 26.437 348 204 11 31 353 30 350 4.80e-22 96.3
Msa1278160 AT1G20135.1 26.124 356 217 15 3 343 2 326 2.19e-21 94.0
Msa1278160 AT5G03610.1 24.277 346 202 10 32 353 44 353 3.05e-21 94.0
Msa1278160 AT5G45670.1 24.513 359 218 11 33 365 31 362 3.25e-21 94.0
Msa1278160 AT2G19050.1 25.513 341 203 13 33 355 33 340 3.64e-21 93.6
Msa1278160 AT1G28600.2 33.945 218 105 11 9 210 10 204 6.94e-21 90.5
Msa1278160 AT1G75920.4 28.571 322 178 14 47 349 20 308 6.96e-21 92.4
Msa1278160 AT1G75910.1 27.920 351 205 15 17 348 14 335 1.39e-20 92.0
Msa1278160 AT1G75880.1 24.533 375 230 12 9 353 21 372 1.43e-20 92.4
Msa1278160 AT1G20130.1 25.648 347 212 11 31 352 204 529 2.03e-20 93.2
Msa1278160 AT5G15720.3 27.491 291 160 9 78 344 48 311 2.14e-20 91.3
Msa1278160 AT1G75890.2 25.595 336 204 11 31 344 47 358 2.25e-20 91.7
Msa1278160 AT5G42170.1 26.331 338 203 11 31 348 50 361 2.48e-20 91.7
Msa1278160 AT1G75890.3 25.595 336 204 11 31 344 76 387 3.11e-20 91.7
Msa1278160 AT4G28780.1 25.337 371 227 13 9 353 4 350 3.57e-20 91.3
Msa1278160 AT1G20130.2 25.648 347 212 11 31 352 184 509 5.09e-20 91.7
Msa1278160 AT1G75890.1 26.023 342 208 11 31 344 47 371 7.75e-20 90.5
Msa1278160 AT1G54030.2 28.736 261 132 10 30 278 51 269 9.83e-20 89.0
Msa1278160 AT1G33811.1 26.331 357 219 14 32 365 35 370 1.15e-19 89.7
Msa1278160 AT1G75880.2 24.267 375 230 12 9 353 21 371 1.31e-19 89.7
Msa1278160 AT5G45950.1 26.347 334 197 14 32 345 41 345 1.33e-19 89.4
Msa1278160 AT5G63170.1 27.114 343 202 12 14 339 10 321 2.08e-19 88.6
Msa1278160 AT1G71250.1 25.360 347 210 13 31 354 41 361 2.14e-19 89.0
Msa1278160 AT1G20120.1 25.287 348 209 12 29 352 76 396 2.32e-19 89.4
Msa1278160 AT3G14820.1 27.348 362 214 13 9 348 8 342 2.93e-19 88.2
Msa1278160 AT5G15720.2 27.778 288 163 10 33 302 32 292 3.19e-19 87.8
Msa1278160 AT1G74460.1 24.444 360 222 13 13 348 4 337 5.53e-19 87.8
Msa1278160 AT1G23500.1 25.797 345 227 9 13 350 17 339 8.31e-19 87.0
Msa1278160 AT1G71691.3 26.552 290 160 8 32 302 56 311 8.45e-19 86.3
Msa1278160 AT3G53100.1 24.556 338 214 9 35 353 33 348 1.15e-18 86.7
Msa1278160 AT1G54020.2 23.810 336 201 9 31 348 33 331 1.33e-18 86.7
Msa1278160 AT1G73610.1 25.905 359 222 11 6 348 6 336 1.48e-18 86.3
Msa1278160 AT5G45960.1 25.076 331 201 11 31 337 47 354 1.72e-18 86.3
Msa1278160 AT1G59406.1 25.405 370 220 13 9 353 8 346 2.41e-18 85.5
Msa1278160 AT1G59030.1 25.405 370 220 13 9 353 8 346 2.41e-18 85.5
Msa1278160 AT1G58725.1 25.405 370 220 13 9 353 8 346 2.41e-18 85.5
Msa1278160 AT1G28610.1 32.127 221 119 11 2 210 3 204 3.35e-18 83.6
Msa1278160 AT2G03980.2 26.220 328 196 11 36 346 55 353 3.67e-18 85.5
Msa1278160 AT2G03980.3 26.220 328 196 11 36 346 55 353 3.67e-18 85.5
Msa1278160 AT2G03980.1 26.220 328 196 11 36 346 55 353 3.67e-18 85.5
Msa1278160 AT2G03980.4 26.220 328 196 11 36 346 55 353 3.67e-18 85.5
Msa1278160 AT1G58520.3 26.866 335 200 12 35 353 34 339 3.84e-18 85.1
Msa1278160 AT1G58525.1 26.866 335 200 12 35 353 34 339 3.84e-18 85.1
Msa1278160 AT5G03600.1 27.485 342 190 15 32 354 15 317 3.86e-18 84.7
Msa1278160 AT5G03600.2 27.485 342 190 15 32 354 50 352 4.60e-18 85.1
Msa1278160 AT2G40250.1 22.321 336 218 9 31 344 36 350 5.44e-18 84.7
Msa1278160 AT3G14220.1 25.936 374 216 14 1 350 1 337 1.03e-17 84.0
Msa1278160 AT5G37690.1 22.727 352 225 9 14 344 10 335 2.58e-17 82.8
Msa1278160 AT4G30140.1 25.294 340 203 11 33 355 35 340 2.94e-17 82.4
Msa1278160 AT1G75900.1 25.146 342 206 11 31 349 43 357 3.24e-17 82.4
Msa1278160 AT2G30310.1 24.377 361 227 15 2 339 4 341 1.54e-16 80.5
Msa1278160 AT1G71691.1 25.333 300 162 10 77 350 3 266 2.39e-16 79.0
Msa1278160 AT2G24560.1 24.654 361 211 14 14 339 7 341 3.95e-16 79.3
Msa1278160 AT1G58430.1 24.340 341 213 13 29 347 33 350 5.07e-16 79.0
Msa1278160 AT1G54010.1 24.096 332 198 10 31 342 36 333 7.12e-16 78.6
Msa1278160 AT3G09930.2 22.353 340 198 9 32 343 40 341 8.51e-16 78.2
Msa1278160 AT3G09930.1 22.353 340 198 9 32 343 40 341 8.51e-16 78.2
Msa1278160 AT1G75920.3 26.844 339 168 15 29 348 27 304 7.94e-15 75.1
Msa1278160 AT1G54000.1 24.179 335 198 13 31 344 36 335 1.56e-14 74.7
Msa1278160 AT2G24560.2 25.633 316 186 12 14 304 7 298 6.26e-14 72.4
Msa1278160 AT3G43550.1 26.144 306 183 11 11 302 10 286 1.82e-13 70.5
Msa1278160 AT2G36325.1 22.701 348 194 10 32 348 48 351 3.46e-13 70.5
Msa1278160 AT5G37690.2 21.875 352 220 10 14 344 10 327 1.02e-12 68.9
Msa1278160 AT3G14210.1 25.074 339 192 15 31 344 36 337 1.50e-11 65.9

Find 88 sgRNAs with CRISPR-Local

Find 218 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATCCTATTGATTGCAAATA+TGG 0.176378 8_3:-14200831 None:intergenic
CCTTGATACCAGAGGCAATT+TGG 0.257541 8_3:-14201574 None:intergenic
ATTCCTTCACCTGATATCTT+TGG 0.257780 8_3:+14201446 Msa1278160:CDS
ATATTGCCACACAATGCTTT+AGG 0.268393 8_3:-14203344 None:intergenic
TTTCGTCATCCTACATCTTA+TGG 0.278515 8_3:+14201978 Msa1278160:CDS
CATCCCAACTCACATAGTTT+TGG 0.283997 8_3:-14203391 None:intergenic
TTGCAAATATGGGCTCAAAT+AGG 0.303329 8_3:-14200820 None:intergenic
CATAGTTTATGAAGAAGAAA+TGG 0.329829 8_3:-14203485 None:intergenic
TGCAAATATGGGCTCAAATA+GGG 0.337598 8_3:-14200819 None:intergenic
TATTGCCACACAATGCTTTA+GGG 0.349859 8_3:-14203343 None:intergenic
TAAGCAATTGATCAATCAAT+AGG 0.359946 8_3:-14203518 None:intergenic
ACTACATCTTTCTTTGTAAG+TGG 0.366369 8_3:+14200909 Msa1278160:CDS
AAGCTCCATTAGAGCAGAAT+TGG 0.374960 8_3:-14201955 None:intergenic
GGACACCAATTCTGCTCTAA+TGG 0.377223 8_3:+14201950 Msa1278160:CDS
ACATTTATGGTATTAAATCT+TGG 0.377620 8_3:+14201753 Msa1278160:CDS
GGAGATTCAAATTCGGATAC+AGG 0.378206 8_3:+14200358 Msa1278160:CDS
CCATGCAATTTACTAACAAT+GGG 0.384377 8_3:-14200192 None:intergenic
CAACTTTGGAGATTCAAATT+CGG 0.394993 8_3:+14200351 Msa1278160:CDS
ATAGACTTTCCAAAGATATC+AGG 0.399393 8_3:-14201455 None:intergenic
TTTAAAGGAATATTCAACTT+TGG 0.411690 8_3:+14200337 Msa1278160:CDS
TTGCCCTTCAAATACAACTA+AGG 0.425308 8_3:+14200943 Msa1278160:CDS
ACCATGCAATTTACTAACAA+TGG 0.426797 8_3:-14200193 None:intergenic
AGTTGTATTTGAAGGGCAAA+AGG 0.427516 8_3:-14200939 None:intergenic
AGCCCATATTTGCAATCAAT+AGG 0.428537 8_3:+14200828 Msa1278160:CDS
ATAGTTTATGAAGAAGAAAT+GGG 0.428648 8_3:-14203484 None:intergenic
ATCCTATTGATTGCAAATAT+GGG 0.441395 8_3:-14200830 None:intergenic
CCAAATTGCCTCTGGTATCA+AGG 0.451098 8_3:+14201574 Msa1278160:CDS
GCACAAGTAGAGGGTTTCAA+TGG 0.454154 8_3:-14201410 None:intergenic
TTTGCCTTAGTTGTATTTGA+AGG 0.454695 8_3:-14200947 None:intergenic
GGAAGCTCCACCAAGTATCC+AGG 0.461563 8_3:-14201792 None:intergenic
GCAGCCAGTGGTGGTATCAA+TGG 0.466256 8_3:+14201521 Msa1278160:CDS
CCAGCACAACCTGGTCCCTA+TGG 0.472649 8_3:+14200400 Msa1278160:CDS
AGATGCTTCCCTCATTTATG+TGG 0.472692 8_3:+14201929 Msa1278160:CDS
GCAATTTGGTAGATGATTTG+AGG 0.477959 8_3:-14201560 None:intergenic
AAACTTGCAGCGGAGGCACT+TGG 0.478392 8_3:+14200792 Msa1278160:intron
TTTGAAATAGGTCATTCCAT+AGG 0.482824 8_3:-14200416 None:intergenic
GGGATGCTACCCTGGATACT+TGG 0.483418 8_3:+14201782 Msa1278160:CDS
CCATAGGGACCAGGTTGTGC+TGG 0.484792 8_3:-14200400 None:intergenic
CCAGTTGGACGTTCTTCTGA+TGG 0.490286 8_3:+14200442 Msa1278160:CDS
ATCATCTACCAAATTGCCTC+TGG 0.492203 8_3:+14201566 Msa1278160:CDS
TTGAAATAGGTCATTCCATA+GGG 0.494978 8_3:-14200415 None:intergenic
TTTATGAAAATCATGAACCT+TGG 0.495125 8_3:-14200985 None:intergenic
GGTCCAGTGGGATGCTACCC+TGG 0.496391 8_3:+14201774 Msa1278160:CDS
ATAGCTAAGGCCATTCTCAA+TGG 0.497881 8_3:+14203446 Msa1278160:CDS
CCATCAGAAGAACGTCCAAC+TGG 0.500221 8_3:-14200442 None:intergenic
TGCTAACAAGATTATAGCTA+AGG 0.510664 8_3:+14203433 Msa1278160:CDS
TCTATTTATATGTTCTACAT+TGG 0.519833 8_3:+14201473 Msa1278160:CDS
GTTGTATTTGAAGGGCAAAA+GGG 0.523722 8_3:-14200938 None:intergenic
TTCTGATGGGAGGCTCATTG+TGG 0.528000 8_3:+14200456 Msa1278160:CDS
CAAAACTATGTGAGTTGGGA+TGG 0.530474 8_3:+14203392 Msa1278160:CDS
ATGCTACCCTGGATACTTGG+TGG 0.535658 8_3:+14201785 Msa1278160:CDS
TCTAAGTCAGAACTAGTATG+AGG 0.536472 8_3:-14201813 None:intergenic
TTGCCTTAGTTGTATTTGAA+GGG 0.537401 8_3:-14200946 None:intergenic
ACTTAGAGAACCATTGAGAA+TGG 0.545436 8_3:-14203456 None:intergenic
CAGTTGGACGTTCTTCTGAT+GGG 0.552439 8_3:+14200443 Msa1278160:CDS
TATTCCTTTAAAATCACAAG+TGG 0.554154 8_3:-14200326 None:intergenic
GTATTAAATCTTGGTCCAGT+GGG 0.556708 8_3:+14201762 Msa1278160:CDS
CCCATTGTTAGTAAATTGCA+TGG 0.557249 8_3:+14200192 Msa1278160:five_prime_UTR
CTTACAAAGAAAGATGTAGT+TGG 0.559336 8_3:-14200906 None:intergenic
CAATCCATTGATACCACCAC+TGG 0.565648 8_3:-14201525 None:intergenic
TTCTAGGAATTATATGCACA+AGG 0.566461 8_3:+14201723 Msa1278160:intron
CACAAGTAGAGGGTTTCAAT+GGG 0.566749 8_3:-14201409 None:intergenic
GTTCATGTACCATAAGATGT+AGG 0.569383 8_3:-14201987 None:intergenic
AATTGGTGTCCACATAAATG+AGG 0.573639 8_3:-14201938 None:intergenic
TATCCAGGGTAGCATCCCAC+TGG 0.576811 8_3:-14201777 None:intergenic
GGTATTAAATCTTGGTCCAG+TGG 0.578970 8_3:+14201761 Msa1278160:CDS
TCAGCATTTCCAGCACAACC+TGG 0.586185 8_3:+14200391 Msa1278160:CDS
CTAGGAATTATATGCACAAG+GGG 0.598608 8_3:+14201725 Msa1278160:intron
ATTGGTGTCCACATAAATGA+GGG 0.604615 8_3:-14201937 None:intergenic
TTGGACGTTCTTCTGATGGG+AGG 0.605142 8_3:+14200446 Msa1278160:CDS
TCTAGGAATTATATGCACAA+GGG 0.619448 8_3:+14201724 Msa1278160:intron
AGTTCTGACTTAGATGAACA+TGG 0.622431 8_3:+14201822 Msa1278160:CDS
AATGCTACAATTCAAAGCCA+AGG 0.622698 8_3:+14200968 Msa1278160:CDS
TTTCCAAAGATATCAGGTGA+AGG 0.628282 8_3:-14201449 None:intergenic
GAAGCTCCACCAAGTATCCA+GGG 0.631396 8_3:-14201791 None:intergenic
TAGGTCATTCCATAGGGACC+AGG 0.635726 8_3:-14200409 None:intergenic
AGTTGGTAAAAGTACAGTAG+AGG 0.644237 8_3:-14200889 None:intergenic
TACTCTAACCTTGATACCAG+AGG 0.652573 8_3:-14201582 None:intergenic
TTTGACCCTAAAGCATTGTG+TGG 0.654114 8_3:+14203338 Msa1278160:CDS
GATTCAAATTCGGATACAGG+CGG 0.660791 8_3:+14200361 Msa1278160:CDS
TAGTTTATGAAGAAGAAATG+GGG 0.665437 8_3:-14203483 None:intergenic
TAGGATCAGACTACACACAT+GGG 0.670588 8_3:+14200847 Msa1278160:CDS
ATGCAATTTACTAACAATGG+GGG 0.677349 8_3:-14200190 None:intergenic
ATAGGATCAGACTACACACA+TGG 0.682252 8_3:+14200846 Msa1278160:CDS
AGTTTATGAAGAAGAAATGG+GGG 0.690487 8_3:-14203482 None:intergenic
CATGCAATTTACTAACAATG+GGG 0.698633 8_3:-14200191 None:intergenic
AGGATCAGACTACACACATG+GGG 0.718068 8_3:+14200848 Msa1278160:CDS
TAGGAATTATATGCACAAGG+GGG 0.740802 8_3:+14201726 Msa1278160:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAATTAAATATTATAAAAA+TGG - chr8_3:14203068-14203087 None:intergenic 0.0%
!!! AATCAAATTTAAGTTATTTA+TGG - chr8_3:14201032-14201051 None:intergenic 10.0%
!!! AATTTCTAAATATTTTTGTT+GGG + chr8_3:14202227-14202246 Msa1278160:intron 10.0%
!! AATTATTATGAATATCAAAT+TGG - chr8_3:14202405-14202424 None:intergenic 10.0%
!!! GATATTTTACTTTTTTTAAA+AGG - chr8_3:14202492-14202511 None:intergenic 10.0%
!! ATATGATATATTTCAAATTT+CGG + chr8_3:14202653-14202672 Msa1278160:intron 10.0%
!! AACAAATAATATATGAAATG+TGG - chr8_3:14200769-14200788 None:intergenic 15.0%
!! TTATTAAAATTAACAAACCA+AGG - chr8_3:14202017-14202036 None:intergenic 15.0%
!! TTCAATTGAAATATTTGAAT+TGG - chr8_3:14202200-14202219 None:intergenic 15.0%
!! AAAAATATTTAGAAATTGAG+AGG - chr8_3:14202224-14202243 None:intergenic 15.0%
!!! CAATTTCTAAATATTTTTGT+TGG + chr8_3:14202226-14202245 Msa1278160:intron 15.0%
!! TCTATGTAAATTATATTGTT+TGG - chr8_3:14202545-14202564 None:intergenic 15.0%
!! TTTAAAGGAATATTCAACTT+TGG + chr8_3:14200337-14200356 Msa1278160:CDS 20.0%
!! TATACATAAGAGATAACTAA+CGG - chr8_3:14200669-14200688 None:intergenic 20.0%
!! TATAAATTAGTCAAGAACTA+AGG - chr8_3:14201298-14201317 None:intergenic 20.0%
!! TCTATTTATATGTTCTACAT+TGG + chr8_3:14201473-14201492 Msa1278160:CDS 20.0%
!!! TGGATGTTGTATATTATTTT+AGG + chr8_3:14201619-14201638 Msa1278160:intron 20.0%
!! ACATTTATGGTATTAAATCT+TGG + chr8_3:14201753-14201772 Msa1278160:CDS 20.0%
!!! TGAAGTTTAGAACATTTATA+GGG + chr8_3:14202346-14202365 Msa1278160:intron 20.0%
!!! TACAACATGAGTTTTTTTAT+AGG - chr8_3:14202608-14202627 None:intergenic 20.0%
!!! ATCATATTATTTTATGCATG+TGG - chr8_3:14202640-14202659 None:intergenic 20.0%
!! GAATATCAGGATAATAAATA+AGG - chr8_3:14202975-14202994 None:intergenic 20.0%
!! ATAGTTTATGAAGAAGAAAT+GGG - chr8_3:14203487-14203506 None:intergenic 20.0%
!!! TATTCCTTTAAAATCACAAG+TGG - chr8_3:14200329-14200348 None:intergenic 25.0%
! ACCTCAAATAATATTGCATT+CGG - chr8_3:14200550-14200569 None:intergenic 25.0%
! TCAATGTTTGAATTTCGATT+GGG - chr8_3:14200602-14200621 None:intergenic 25.0%
! ATCAATGTTTGAATTTCGAT+TGG - chr8_3:14200603-14200622 None:intergenic 25.0%
!!! ATTGATTCGTTATTTTGTTG+CGG + chr8_3:14200617-14200636 Msa1278160:intron 25.0%
! ATACATAAGAGATAACTAAC+GGG - chr8_3:14200668-14200687 None:intergenic 25.0%
!! ATCCTATTGATTGCAAATAT+GGG - chr8_3:14200833-14200852 None:intergenic 25.0%
! TTTATGAAAATCATGAACCT+TGG - chr8_3:14200988-14201007 None:intergenic 25.0%
!! GTTCATGATTTTCATAAAAG+AGG + chr8_3:14200990-14201009 Msa1278160:CDS 25.0%
!!! ATATATTTCTAGTCCCTATT+AGG - chr8_3:14201333-14201352 None:intergenic 25.0%
! GTTGAATATACGAAATTTCT+AGG + chr8_3:14201707-14201726 Msa1278160:intron 25.0%
! AAAATTAACAAACCAAGGAA+AGG - chr8_3:14202012-14202031 None:intergenic 25.0%
!!! AATTGCTCACTTTTTGAATT+CGG - chr8_3:14202324-14202343 None:intergenic 25.0%
!! GTGAAGTTTAGAACATTTAT+AGG + chr8_3:14202345-14202364 Msa1278160:intron 25.0%
! TTAAGTCAGAAATATGAGTA+AGG - chr8_3:14202456-14202475 None:intergenic 25.0%
!!! GTTACAAGTAGTTATTTCTA+AGG + chr8_3:14202696-14202715 Msa1278160:intron 25.0%
!!! TTTATTTTATCCTATCCCTT+TGG - chr8_3:14202859-14202878 None:intergenic 25.0%
! TTTAAAAATGGCAGAATATC+AGG - chr8_3:14202988-14203007 None:intergenic 25.0%
! GATATAGATAGGATATGATA+AGG - chr8_3:14203183-14203202 None:intergenic 25.0%
! TAGTTTATGAAGAAGAAATG+GGG - chr8_3:14203486-14203505 None:intergenic 25.0%
! CATAGTTTATGAAGAAGAAA+TGG - chr8_3:14203488-14203507 None:intergenic 25.0%
ATGCAATTTACTAACAATGG+GGG - chr8_3:14200193-14200212 None:intergenic 30.0%
CATGCAATTTACTAACAATG+GGG - chr8_3:14200194-14200213 None:intergenic 30.0%
CCATGCAATTTACTAACAAT+GGG - chr8_3:14200195-14200214 None:intergenic 30.0%
ACCATGCAATTTACTAACAA+TGG - chr8_3:14200196-14200215 None:intergenic 30.0%
! TGCATTTTCTGACATCTTAA+AGG - chr8_3:14200248-14200267 None:intergenic 30.0%
! TACTCCACTTGTGATTTTAA+AGG + chr8_3:14200322-14200341 Msa1278160:CDS 30.0%
! CAACTTTGGAGATTCAAATT+CGG + chr8_3:14200351-14200370 Msa1278160:CDS 30.0%
TTGAAATAGGTCATTCCATA+GGG - chr8_3:14200418-14200437 None:intergenic 30.0%
! TTTGAAATAGGTCATTCCAT+AGG - chr8_3:14200419-14200438 None:intergenic 30.0%
ACCTATTTCAAAAAACCAGT+TGG + chr8_3:14200427-14200446 Msa1278160:CDS 30.0%
!!! TCCAACTGGTTTTTTGAAAT+AGG - chr8_3:14200431-14200450 None:intergenic 30.0%
!!! ATTGTGGATTTTTTGGGTAA+TGG + chr8_3:14200472-14200491 Msa1278160:intron 30.0%
ATAATATTGCATTCGGTTGA+AGG - chr8_3:14200543-14200562 None:intergenic 30.0%
ACCGAATGCAATATTATTTG+AGG + chr8_3:14200546-14200565 Msa1278160:intron 30.0%
ACGTGTCTACATTTAGTATT+TGG - chr8_3:14200577-14200596 None:intergenic 30.0%
TGTCCAACACATGAAAAAAT+TGG + chr8_3:14200741-14200760 Msa1278160:intron 30.0%
!!! GAACCAATTTTTTCATGTGT+TGG - chr8_3:14200747-14200766 None:intergenic 30.0%
! GATCCTATTGATTGCAAATA+TGG - chr8_3:14200834-14200853 None:intergenic 30.0%
CTTACAAAGAAAGATGTAGT+TGG - chr8_3:14200909-14200928 None:intergenic 30.0%
ACTACATCTTTCTTTGTAAG+TGG + chr8_3:14200909-14200928 Msa1278160:CDS 30.0%
TTGCCTTAGTTGTATTTGAA+GGG - chr8_3:14200949-14200968 None:intergenic 30.0%
TTTGCCTTAGTTGTATTTGA+AGG - chr8_3:14200950-14200969 None:intergenic 30.0%
! TCTCAAAATTTTATCCGTGT+CGG + chr8_3:14201209-14201228 Msa1278160:intron 30.0%
GACTCAAAACCAATGAATTA+CGG - chr8_3:14201276-14201295 None:intergenic 30.0%
TACTAACTTCTAGTCCTAAT+AGG + chr8_3:14201316-14201335 Msa1278160:intron 30.0%
ACTAACTTCTAGTCCTAATA+GGG + chr8_3:14201317-14201336 Msa1278160:intron 30.0%
! TGAAGGAATCTTGATTTTTG+AGG - chr8_3:14201435-14201454 None:intergenic 30.0%
ATAGACTTTCCAAAGATATC+AGG - chr8_3:14201458-14201477 None:intergenic 30.0%
AGAGTAGATATTTCATGTCA+TGG + chr8_3:14201599-14201618 Msa1278160:intron 30.0%
! TTCTAGGAATTATATGCACA+AGG + chr8_3:14201723-14201742 Msa1278160:intron 30.0%
TCTAGGAATTATATGCACAA+GGG + chr8_3:14201724-14201743 Msa1278160:intron 30.0%
TTATGCTTGCAACTCATTAA+AGG - chr8_3:14202054-14202073 None:intergenic 30.0%
TTGTTCATTTATGCTTGCAT+TGG - chr8_3:14202091-14202110 None:intergenic 30.0%
! ACACTCTAAAGAAATGCAAA+TGG - chr8_3:14202147-14202166 None:intergenic 30.0%
! TATTTCTGACTTAATGCAAC+TGG + chr8_3:14202462-14202481 Msa1278160:intron 30.0%
ATCAAACATGAGATTTAAGC+AGG - chr8_3:14202833-14202852 None:intergenic 30.0%
AGAAATTACAAAGGAAAGTC+AGG - chr8_3:14202899-14202918 None:intergenic 30.0%
TTCCTTTGTAATTTCTATCC+TGG + chr8_3:14202903-14202922 Msa1278160:intron 30.0%
TCCTTTGTAATTTCTATCCT+GGG + chr8_3:14202904-14202923 Msa1278160:intron 30.0%
ATAGAAAGCTGGATATAGAT+AGG - chr8_3:14203194-14203213 None:intergenic 30.0%
TGCTAACAAGATTATAGCTA+AGG + chr8_3:14203433-14203452 Msa1278160:CDS 30.0%
AGTTTATGAAGAAGAAATGG+GGG - chr8_3:14203485-14203504 None:intergenic 30.0%
CCCATTGTTAGTAAATTGCA+TGG + chr8_3:14200192-14200211 Msa1278160:five_prime_UTR 35.0%
!!! AGGCTCATTGTGGATTTTTT+GGG + chr8_3:14200466-14200485 Msa1278160:CDS 35.0%
! ATTTGTTGCTAAACTTGCAG+CGG + chr8_3:14200782-14200801 Msa1278160:intron 35.0%
TGCAAATATGGGCTCAAATA+GGG - chr8_3:14200822-14200841 None:intergenic 35.0%
TTGCAAATATGGGCTCAAAT+AGG - chr8_3:14200823-14200842 None:intergenic 35.0%
AGCCCATATTTGCAATCAAT+AGG + chr8_3:14200828-14200847 Msa1278160:CDS 35.0%
!! AGTTGGTAAAAGTACAGTAG+AGG - chr8_3:14200892-14200911 None:intergenic 35.0%
GTTGTATTTGAAGGGCAAAA+GGG - chr8_3:14200941-14200960 None:intergenic 35.0%
AGTTGTATTTGAAGGGCAAA+AGG - chr8_3:14200942-14200961 None:intergenic 35.0%
TTGCCCTTCAAATACAACTA+AGG + chr8_3:14200943-14200962 Msa1278160:CDS 35.0%
AATGCTACAATTCAAAGCCA+AGG + chr8_3:14200968-14200987 Msa1278160:CDS 35.0%
CACAAACATCTCTGATTGAA+GGG + chr8_3:14201107-14201126 Msa1278160:intron 35.0%
ACAAACATCTCTGATTGAAG+GGG + chr8_3:14201108-14201127 Msa1278160:intron 35.0%
!!! ATTTTTGAGGCACAAGTAGA+GGG - chr8_3:14201422-14201441 None:intergenic 35.0%
ATTCCTTCACCTGATATCTT+TGG + chr8_3:14201446-14201465 Msa1278160:CDS 35.0%
TTTCCAAAGATATCAGGTGA+AGG - chr8_3:14201452-14201471 None:intergenic 35.0%
GCAATTTGGTAGATGATTTG+AGG - chr8_3:14201563-14201582 None:intergenic 35.0%
AGGCTACAATCTTCACAATT+AGG + chr8_3:14201639-14201658 Msa1278160:intron 35.0%
CTAGGAATTATATGCACAAG+GGG + chr8_3:14201725-14201744 Msa1278160:intron 35.0%
TAGGAATTATATGCACAAGG+GGG + chr8_3:14201726-14201745 Msa1278160:intron 35.0%
GTATTAAATCTTGGTCCAGT+GGG + chr8_3:14201762-14201781 Msa1278160:CDS 35.0%
TCTAAGTCAGAACTAGTATG+AGG - chr8_3:14201816-14201835 None:intergenic 35.0%
! AGTTCTGACTTAGATGAACA+TGG + chr8_3:14201822-14201841 Msa1278160:CDS 35.0%
! ATTGGTGTCCACATAAATGA+GGG - chr8_3:14201940-14201959 None:intergenic 35.0%
! AATTGGTGTCCACATAAATG+AGG - chr8_3:14201941-14201960 None:intergenic 35.0%
TTTCGTCATCCTACATCTTA+TGG + chr8_3:14201978-14201997 Msa1278160:CDS 35.0%
GTTCATGTACCATAAGATGT+AGG - chr8_3:14201990-14202009 None:intergenic 35.0%
TAGAGTGTGTGTTTGAATGA+AGG + chr8_3:14202159-14202178 Msa1278160:intron 35.0%
TAAAGGATTCATCACACTTG+TGG - chr8_3:14202757-14202776 None:intergenic 35.0%
ACAAGTGTGATGAATCCTTT+AGG + chr8_3:14202756-14202775 Msa1278160:intron 35.0%
CAAGTGTGATGAATCCTTTA+GGG + chr8_3:14202757-14202776 Msa1278160:intron 35.0%
GTCAGGATAGGATAGAAAAA+TGG - chr8_3:14202882-14202901 None:intergenic 35.0%
TTACAAAGGAAAGTCAGGAT+AGG - chr8_3:14202894-14202913 None:intergenic 35.0%
ACCCAGGATAGAAATTACAA+AGG - chr8_3:14202908-14202927 None:intergenic 35.0%
GTAATTTCTATCCTGGGTAT+AGG + chr8_3:14202910-14202929 Msa1278160:intron 35.0%
! TGGGTTAGAAATTATCCTGA+TGG + chr8_3:14202934-14202953 Msa1278160:intron 35.0%
GGGTTAGAAATTATCCTGAT+GGG + chr8_3:14202935-14202954 Msa1278160:intron 35.0%
AATGATCTTCTAATCCCATC+AGG - chr8_3:14202952-14202971 None:intergenic 35.0%
AACACAAAGTGAAACCGTAA+GGG - chr8_3:14203255-14203274 None:intergenic 35.0%
TATTGCCACACAATGCTTTA+GGG - chr8_3:14203346-14203365 None:intergenic 35.0%
ATATTGCCACACAATGCTTT+AGG - chr8_3:14203347-14203366 None:intergenic 35.0%
! ATCCCAACTCACATAGTTTT+GGG - chr8_3:14203393-14203412 None:intergenic 35.0%
ACTTAGAGAACCATTGAGAA+TGG - chr8_3:14203459-14203478 None:intergenic 35.0%
GGAGATTCAAATTCGGATAC+AGG + chr8_3:14200358-14200377 Msa1278160:CDS 40.0%
GATTCAAATTCGGATACAGG+CGG + chr8_3:14200361-14200380 Msa1278160:CDS 40.0%
!!! GAGGCTCATTGTGGATTTTT+TGG + chr8_3:14200465-14200484 Msa1278160:CDS 40.0%
ATAGGATCAGACTACACACA+TGG + chr8_3:14200846-14200865 Msa1278160:CDS 40.0%
TAGGATCAGACTACACACAT+GGG + chr8_3:14200847-14200866 Msa1278160:CDS 40.0%
GCACAAACATCTCTGATTGA+AGG + chr8_3:14201106-14201125 Msa1278160:intron 40.0%
TGTCTGTGTCCGTAATTCAT+TGG + chr8_3:14201264-14201283 Msa1278160:intron 40.0%
CACAAGTAGAGGGTTTCAAT+GGG - chr8_3:14201412-14201431 None:intergenic 40.0%
!!! GATTTTTGAGGCACAAGTAG+AGG - chr8_3:14201423-14201442 None:intergenic 40.0%
ACTTCAAAAATAGCAGCCAG+TGG + chr8_3:14201509-14201528 Msa1278160:CDS 40.0%
ATCATCTACCAAATTGCCTC+TGG + chr8_3:14201566-14201585 Msa1278160:CDS 40.0%
TACTCTAACCTTGATACCAG+AGG - chr8_3:14201585-14201604 None:intergenic 40.0%
GGTATTAAATCTTGGTCCAG+TGG + chr8_3:14201761-14201780 Msa1278160:CDS 40.0%
AGATGCTTCCCTCATTTATG+TGG + chr8_3:14201929-14201948 Msa1278160:CDS 40.0%
AAGCTCCATTAGAGCAGAAT+TGG - chr8_3:14201958-14201977 None:intergenic 40.0%
ATGGTACATGAACCTTTCCT+TGG + chr8_3:14201997-14202016 Msa1278160:intron 40.0%
TCTCATGTTTGATGCACCAA+AGG + chr8_3:14202840-14202859 Msa1278160:intron 40.0%
CTCATGTTTGATGCACCAAA+GGG + chr8_3:14202841-14202860 Msa1278160:intron 40.0%
ATCCTATCCTGACCATCAAA+CGG + chr8_3:14203228-14203247 Msa1278160:intron 40.0%
GAACACAAAGTGAAACCGTA+AGG - chr8_3:14203256-14203275 None:intergenic 40.0%
ACGGTTTCACTTTGTGTTCT+TGG + chr8_3:14203257-14203276 Msa1278160:intron 40.0%
TACAGTACCAAAGCATGTTG+TGG + chr8_3:14203293-14203312 Msa1278160:intron 40.0%
!! TTTGACCCTAAAGCATTGTG+TGG + chr8_3:14203338-14203357 Msa1278160:CDS 40.0%
!! TCCCAACTCACATAGTTTTG+GGG - chr8_3:14203392-14203411 None:intergenic 40.0%
! CATCCCAACTCACATAGTTT+TGG - chr8_3:14203394-14203413 None:intergenic 40.0%
! CAAAACTATGTGAGTTGGGA+TGG + chr8_3:14203392-14203411 Msa1278160:CDS 40.0%
ATAGCTAAGGCCATTCTCAA+TGG + chr8_3:14203446-14203465 Msa1278160:CDS 40.0%
CAGTTGGACGTTCTTCTGAT+GGG + chr8_3:14200443-14200462 Msa1278160:CDS 45.0%
ACGGGATTGAGTCTAACAGA+AGG - chr8_3:14200650-14200669 None:intergenic 45.0%
AGGATCAGACTACACACATG+GGG + chr8_3:14200848-14200867 Msa1278160:CDS 45.0%
GCACAAGTAGAGGGTTTCAA+TGG - chr8_3:14201413-14201432 None:intergenic 45.0%
TCAAAAATAGCAGCCAGTGG+TGG + chr8_3:14201512-14201531 Msa1278160:CDS 45.0%
CAATCCATTGATACCACCAC+TGG - chr8_3:14201528-14201547 None:intergenic 45.0%
CCTTGATACCAGAGGCAATT+TGG - chr8_3:14201577-14201596 None:intergenic 45.0%
CCAAATTGCCTCTGGTATCA+AGG + chr8_3:14201574-14201593 Msa1278160:CDS 45.0%
ACAAGGGGGACGTACATTTA+TGG + chr8_3:14201740-14201759 Msa1278160:CDS 45.0%
GGACACCAATTCTGCTCTAA+TGG + chr8_3:14201950-14201969 Msa1278160:CDS 45.0%
!! ATCCTTTAGGGTGCGTTTGA+TGG + chr8_3:14202769-14202788 Msa1278160:intron 45.0%
! TGCGTTTGATGGTCAGGATA+GGG + chr8_3:14202780-14202799 Msa1278160:intron 45.0%
GTTTGATGCACCAAAGGGAT+AGG + chr8_3:14202846-14202865 Msa1278160:intron 45.0%
TTTCTATCCTGGGTATAGGC+TGG + chr8_3:14202914-14202933 Msa1278160:intron 45.0%
TTCTATCCTGGGTATAGGCT+GGG + chr8_3:14202915-14202934 Msa1278160:intron 45.0%
GTGCGCATCAAACACATGAT+AGG + chr8_3:14203140-14203159 Msa1278160:intron 45.0%
GGCAGGATATGATAGAAAGC+TGG - chr8_3:14203205-14203224 None:intergenic 45.0%
TGATGGTCAGGATAGGATAG+AGG - chr8_3:14203226-14203245 None:intergenic 45.0%
TCCTATCCTGACCATCAAAC+GGG + chr8_3:14203229-14203248 Msa1278160:intron 45.0%
TCACTTTGTGTTCTTGGAGC+AGG + chr8_3:14203263-14203282 Msa1278160:intron 45.0%
ACCAAAGCATGTTGTGGTCA+TGG + chr8_3:14203299-14203318 Msa1278160:intron 45.0%
TCCATGACCACAACATGCTT+TGG - chr8_3:14203303-14203322 None:intergenic 45.0%
AAAGCATGTTGTGGTCATGG+AGG + chr8_3:14203302-14203321 Msa1278160:intron 45.0%
AAGCATGTTGTGGTCATGGA+GGG + chr8_3:14203303-14203322 Msa1278160:intron 45.0%
ACCCCCAAAACTATGTGAGT+TGG + chr8_3:14203387-14203406 Msa1278160:CDS 45.0%
!!! CCCAACTCACATAGTTTTGG+GGG - chr8_3:14203391-14203410 None:intergenic 45.0%
CCCCCAAAACTATGTGAGTT+GGG + chr8_3:14203388-14203407 Msa1278160:CDS 45.0%
!! TTATAAACAAAAAATTAAAT+TGG + chr8_3:14202729-14202748 Msa1278160:intron 5.0%
!!! AAATGATAATATTTTAAAAA+TGG - chr8_3:14203000-14203019 None:intergenic 5.0%
TCAGCATTTCCAGCACAACC+TGG + chr8_3:14200391-14200410 Msa1278160:CDS 50.0%
TAGGTCATTCCATAGGGACC+AGG - chr8_3:14200412-14200431 None:intergenic 50.0%
CCATCAGAAGAACGTCCAAC+TGG - chr8_3:14200445-14200464 None:intergenic 50.0%
CCAGTTGGACGTTCTTCTGA+TGG + chr8_3:14200442-14200461 Msa1278160:CDS 50.0%
TTGGACGTTCTTCTGATGGG+AGG + chr8_3:14200446-14200465 Msa1278160:CDS 50.0%
TTCTGATGGGAGGCTCATTG+TGG + chr8_3:14200456-14200475 Msa1278160:CDS 50.0%
TGTTGCTAAACTTGCAGCGG+AGG + chr8_3:14200785-14200804 Msa1278160:intron 50.0%
CATGATACGTGTCGAACACC+AGG - chr8_3:14201137-14201156 None:intergenic 50.0%
CACAAGTGTCAGTGTCGTGT+CGG - chr8_3:14201167-14201186 None:intergenic 50.0%
ATGCTACCCTGGATACTTGG+TGG + chr8_3:14201785-14201804 Msa1278160:CDS 50.0%
GAAGCTCCACCAAGTATCCA+GGG - chr8_3:14201794-14201813 None:intergenic 50.0%
GACCATCAAACGCACCCTAA+AGG - chr8_3:14202774-14202793 None:intergenic 50.0%
! TTAGGGTGCGTTTGATGGTC+AGG + chr8_3:14202774-14202793 Msa1278160:intron 50.0%
! GTGCGTTTGATGGTCAGGAT+AGG + chr8_3:14202779-14202798 Msa1278160:intron 50.0%
TTCTAACCCAGCCTATACCC+AGG - chr8_3:14202924-14202943 None:intergenic 50.0%
AGCATGTTGTGGTCATGGAG+GGG + chr8_3:14203304-14203323 Msa1278160:intron 50.0%
!! AAACTTGCAGCGGAGGCACT+TGG + chr8_3:14200792-14200811 Msa1278160:intron 55.0%
!! CTCTGATTGAAGGGGTGTCC+TGG + chr8_3:14201116-14201135 Msa1278160:intron 55.0%
GCAGCCAGTGGTGGTATCAA+TGG + chr8_3:14201521-14201540 Msa1278160:CDS 55.0%
TATCCAGGGTAGCATCCCAC+TGG - chr8_3:14201780-14201799 None:intergenic 55.0%
GGGATGCTACCCTGGATACT+TGG + chr8_3:14201782-14201801 Msa1278160:CDS 55.0%
GGAAGCTCCACCAAGTATCC+AGG - chr8_3:14201795-14201814 None:intergenic 55.0%
GATGGTCAGGATAGGGAGAC+AGG + chr8_3:14202787-14202806 Msa1278160:intron 55.0%
GGTCAGGATAGGATAGAGGC+AGG - chr8_3:14203222-14203241 None:intergenic 55.0%
! GCCCGTTTGATGGTCAGGAT+AGG - chr8_3:14203233-14203252 None:intergenic 55.0%
! TAAGGGCCCGTTTGATGGTC+AGG - chr8_3:14203238-14203257 None:intergenic 55.0%
GACCATCAAACGGGCCCTTA+CGG + chr8_3:14203238-14203257 Msa1278160:intron 55.0%
AACCGTAAGGGCCCGTTTGA+TGG - chr8_3:14203243-14203262 None:intergenic 55.0%
GCATGTTGTGGTCATGGAGG+GGG + chr8_3:14203305-14203324 Msa1278160:intron 55.0%
CCATAGGGACCAGGTTGTGC+TGG - chr8_3:14200403-14200422 None:intergenic 60.0%
CCAGCACAACCTGGTCCCTA+TGG + chr8_3:14200400-14200419 Msa1278160:CDS 60.0%
CTGACACAGACACGCCGACA+CGG - chr8_3:14201226-14201245 None:intergenic 60.0%
GGTCCAGTGGGATGCTACCC+TGG + chr8_3:14201774-14201793 Msa1278160:CDS 65.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 14200163 14203529 14200163 ID=Msa1278160;Name=Msa1278160
chr8_3 mRNA 14200163 14203529 14200163 ID=Msa1278160-mRNA-1;Parent=Msa1278160;Name=Msa1278160-mRNA-1;_AED=0.13;_eAED=0.13;_QI=90|0.75|0.8|1|1|1|5|0|369
chr8_3 exon 14200163 14200487 14200163 ID=Msa1278160-mRNA-1:exon:5581;Parent=Msa1278160-mRNA-1
chr8_3 exon 14200802 14201011 14200802 ID=Msa1278160-mRNA-1:exon:5582;Parent=Msa1278160-mRNA-1
chr8_3 exon 14201408 14201595 14201408 ID=Msa1278160-mRNA-1:exon:5583;Parent=Msa1278160-mRNA-1
chr8_3 exon 14201729 14201999 14201729 ID=Msa1278160-mRNA-1:exon:5584;Parent=Msa1278160-mRNA-1
chr8_3 exon 14203324 14203529 14203324 ID=Msa1278160-mRNA-1:exon:5585;Parent=Msa1278160-mRNA-1
chr8_3 five_prime_UTR 14200163 14200252 14200163 ID=Msa1278160-mRNA-1:five_prime_utr;Parent=Msa1278160-mRNA-1
chr8_3 CDS 14200253 14200487 14200253 ID=Msa1278160-mRNA-1:cds;Parent=Msa1278160-mRNA-1
chr8_3 CDS 14200802 14201011 14200802 ID=Msa1278160-mRNA-1:cds;Parent=Msa1278160-mRNA-1
chr8_3 CDS 14201408 14201595 14201408 ID=Msa1278160-mRNA-1:cds;Parent=Msa1278160-mRNA-1
chr8_3 CDS 14201729 14201999 14201729 ID=Msa1278160-mRNA-1:cds;Parent=Msa1278160-mRNA-1
chr8_3 CDS 14203324 14203529 14203324 ID=Msa1278160-mRNA-1:cds;Parent=Msa1278160-mRNA-1
Gene Sequence

>Msa1278160

ATGTCAGAAAATGCATTTTTTAAGTTTTTATTAAATTGCATAGTGATATCTTCATTCATCAGTTCAAGTTACTCCACTTGTGATTTTAAAGGAATATTCAACTTTGGAGATTCAAATTCGGATACAGGCGGATTTGATTCAGCATTTCCAGCACAACCTGGTCCCTATGGAATGACCTATTTCAAAAAACCAGTTGGACGTTCTTCTGATGGGAGGCTCATTGTGGATTTTTTGGCGGAGGCACTTGGATTGCCCTATTTGAGCCCATATTTGCAATCAATAGGATCAGACTACACACATGGGGCAAACTTTGCAACATCAGCCTCTACTGTACTTTTACCAACTACATCTTTCTTTGTAAGTGGACTCAGCCCTTTTGCCCTTCAAATACAACTAAGGCAAATGCTACAATTCAAAGCCAAGGTTCATGATTTTCATAAAAGAGACCCATTGAAACCCTCTACTTGTGCCTCAAAAATCAAGATTCCTTCACCTGATATCTTTGGAAAGTCTATTTATATGTTCTACATTGGTCAAAATGACTTCACTTCAAAAATAGCAGCCAGTGGTGGTATCAATGGATTGAAGAACTACTTGCCTCAAATCATCTACCAAATTGCCTCTGGTATCAAGGAATTATATGCACAAGGGGGACGTACATTTATGGTATTAAATCTTGGTCCAGTGGGATGCTACCCTGGATACTTGGTGGAGCTTCCTCATACTAGTTCTGACTTAGATGAACATGGATGCATAATTTCTTATAACAATGCTGTAGATGATTACAACAAATTGTTGAGAGAGACATTGACTCAAACTAGACAAAGTTTATCAGATGCTTCCCTCATTTATGTGGACACCAATTCTGCTCTAATGGAGCTTTTTCGTCATCCTACATCTTATGGGGGAGATTACAACTTTGACCCTAAAGCATTGTGTGGCAATATGCTTGCAAGTGCATGTGAAGACCCCCAAAACTATGTGAGTTGGGATGGCATTCACTTCACAGAAGCTGCTAACAAGATTATAGCTAAGGCCATTCTCAATGGTTCTCTAAGTGATCCCCCATTTCTTCTTCATAAACTATGTGATCTTCAACCTATTGATTGA
Protein sequence

>Msa1278160

MSENAFFKFLLNCIVISSFISSSYSTCDFKGIFNFGDSNSDTGGFDSAFPAQPGPYGMTYFKKPVGRSSDGRLIVDFLAEALGLPYLSPYLQSIGSDYTHGANFATSASTVLLPTTSFFVSGLSPFALQIQLRQMLQFKAKVHDFHKRDPLKPSTCASKIKIPSPDIFGKSIYMFYIGQNDFTSKIAASGGINGLKNYLPQIIYQIASGIKELYAQGGRTFMVLNLGPVGCYPGYLVELPHTSSDLDEHGCIISYNNAVDDYNKLLRETLTQTRQSLSDASLIYVDTNSALMELFRHPTSYGGDYNFDPKALCGNMLASACEDPQNYVSWDGIHFTEAANKIIAKAILNGSLSDPPFLLHKLCDLQPID*