AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1237090


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1237090 MtrunA17_Chr8g0347751 95.103 388 18 1 9 395 1 388 0.0 754
Msa1237090 MtrunA17_Chr7g0275291 64.304 381 117 3 22 394 11 380 0.0 512
Msa1237090 MtrunA17_Chr7g0254461 42.010 388 203 9 15 389 13 391 1.06e-101 306
Msa1237090 MtrunA17_Chr1g0159971 41.005 378 206 4 20 389 23 391 1.47e-97 296
Msa1237090 MtrunA17_Chr8g0381581 39.481 385 209 4 20 387 8 385 3.02e-97 295
Msa1237090 MtrunA17_Chr1g0159991 40.617 389 214 4 9 389 1 380 2.32e-96 293
Msa1237090 MtrunA17_Chr7g0226941 39.788 377 204 7 24 389 14 378 2.25e-93 285
Msa1237090 MtrunA17_Chr1g0160101 40.106 379 209 5 20 389 18 387 1.38e-91 281
Msa1237090 MtrunA17_Chr1g0160031 39.031 392 220 5 6 389 1 381 1.52e-90 278
Msa1237090 MtrunA17_Chr1g0160011 39.440 393 218 5 6 389 1 382 1.57e-90 278
Msa1237090 MtrunA17_Chr7g0226931 39.946 373 197 6 40 391 34 400 1.61e-90 278
Msa1237090 MtrunA17_Chr7g0226911 39.433 388 204 9 22 391 12 386 9.34e-90 276
Msa1237090 MtrunA17_Chr1g0159981 38.933 375 212 4 23 389 25 390 2.78e-87 270
Msa1237090 MtrunA17_Chr6g0450701 36.269 386 233 6 9 389 1 378 3.99e-82 256
Msa1237090 MtrunA17_Chr7g0273101 40.336 357 185 8 41 383 26 368 7.04e-81 253
Msa1237090 MtrunA17_Chr1g0191461 36.927 371 208 8 21 380 11 366 1.61e-75 239
Msa1237090 MtrunA17_Chr6g0450711 35.854 357 219 4 35 389 113 461 2.21e-74 238
Msa1237090 MtrunA17_Chr8g0352901 37.921 356 208 6 40 389 24 372 5.54e-74 235
Msa1237090 MtrunA17_Chr7g0271551 40.116 344 181 9 45 383 37 360 9.89e-73 231
Msa1237090 MtrunA17_Chr6g0450731 36.292 383 220 9 9 389 1 361 9.23e-72 229
Msa1237090 MtrunA17_Chr6g0450721 33.607 366 224 4 24 389 13 359 5.21e-67 216
Msa1237090 MtrunA17_Chr2g0283531 38.630 365 190 11 33 382 20 365 1.25e-66 216
Msa1237090 MtrunA17_Chr2g0283501 35.310 371 207 10 28 383 15 367 7.92e-63 206
Msa1237090 MtrunA17_Chr2g0283481 37.666 377 201 13 21 383 26 382 5.98e-62 204
Msa1237090 MtrunA17_Chr2g0317271 35.180 361 192 12 33 381 19 349 1.14e-56 189
Msa1237090 MtrunA17_Chr3g0104821 35.328 351 202 11 42 381 42 378 1.17e-56 190
Msa1237090 MtrunA17_Chr2g0317261 35.180 361 192 12 33 381 19 349 5.41e-56 187
Msa1237090 MtrunA17_Chr0c01g0489581 34.626 361 194 12 33 381 19 349 9.19e-56 187
Msa1237090 MtrunA17_Chr3g0112821 36.134 357 199 14 34 381 20 356 1.87e-55 186
Msa1237090 MtrunA17_Chr0c01g0489571 34.626 361 194 12 33 381 19 349 3.93e-55 185
Msa1237090 MtrunA17_Chr3g0096551 36.022 372 198 13 33 381 18 372 1.03e-54 185
Msa1237090 MtrunA17_Chr2g0283511 36.034 358 191 14 49 389 36 372 1.23e-53 182
Msa1237090 MtrunA17_Chr3g0112691 35.955 356 204 12 34 381 20 359 1.99e-53 181
Msa1237090 MtrunA17_Chr2g0301581 33.600 375 201 12 22 382 12 352 5.56e-53 180
Msa1237090 MtrunA17_Chr3g0093031 34.711 363 201 13 34 381 20 361 5.59e-53 180
Msa1237090 MtrunA17_Chr2g0301541 33.600 375 201 12 22 382 12 352 1.49e-52 179
Msa1237090 MtrunA17_Chr4g0057991 30.000 390 233 11 9 383 5 369 9.46e-50 172
Msa1237090 MtrunA17_Chr8g0339251 33.956 321 185 8 40 354 24 323 2.48e-48 167
Msa1237090 MtrunA17_Chr8g0344941 32.804 378 194 15 19 373 15 355 4.11e-43 154
Msa1237090 MtrunA17_Chr8g0344931 31.117 376 210 8 29 391 22 361 2.65e-37 138
Msa1237090 MtrunA17_Chr2g0283541 38.974 195 115 4 190 382 99 291 1.32e-35 132
Msa1237090 MtrunA17_Chr2g0301641 30.137 365 204 15 43 388 42 374 1.54e-35 134
Msa1237090 MtrunA17_Chr3g0131321 30.513 390 212 12 8 376 2 353 6.95e-35 132
Msa1237090 MtrunA17_Chr5g0432101 30.376 372 195 16 42 389 31 362 1.29e-34 131
Msa1237090 MtrunA17_Chr2g0301591 31.908 304 164 9 22 314 12 283 1.31e-34 129
Msa1237090 MtrunA17_Chr8g0349321 28.406 345 209 8 44 379 37 352 2.04e-34 130
Msa1237090 MtrunA17_Chr5g0396511 29.462 353 209 13 46 386 48 372 5.54e-34 130
Msa1237090 MtrunA17_Chr3g0104831 31.183 279 172 9 109 381 33 297 2.67e-33 126
Msa1237090 MtrunA17_Chr2g0294301 28.861 395 224 14 4 380 1 356 3.47e-33 127
Msa1237090 MtrunA17_Chr2g0301551 30.065 306 169 10 90 383 37 309 4.43e-33 126
Msa1237090 MtrunA17_Chr2g0330781 29.310 348 207 10 44 379 31 351 1.63e-32 125
Msa1237090 MtrunA17_Chr7g0275011 27.642 369 223 13 24 377 12 351 2.09e-32 125
Msa1237090 MtrunA17_Chr8g0374101 29.006 362 217 13 46 391 39 376 3.02e-32 125
Msa1237090 MtrunA17_Chr2g0301571 30.065 306 167 11 90 382 37 308 4.37e-32 123
Msa1237090 MtrunA17_Chr8g0349341 27.424 361 223 8 27 377 19 350 5.19e-32 124
Msa1237090 MtrunA17_Chr3g0086641 27.473 364 213 13 46 391 40 370 2.55e-31 122
Msa1237090 MtrunA17_Chr8g0349331 27.826 345 181 6 44 379 35 320 9.60e-31 120
Msa1237090 MtrunA17_Chr2g0285061 26.316 399 234 13 18 391 2 365 1.15e-30 120
Msa1237090 MtrunA17_Chr3g0099161 27.979 386 226 13 8 376 60 410 1.16e-30 121
Msa1237090 MtrunA17_Chr7g0275021 28.415 366 214 14 28 377 18 351 1.67e-30 120
Msa1237090 MtrunA17_Chr8g0341001 28.571 343 206 10 44 374 32 347 2.01e-30 119
Msa1237090 MtrunA17_Chr1g0189931 30.086 349 200 13 43 377 31 349 3.05e-30 119
Msa1237090 MtrunA17_Chr2g0320671 27.978 361 194 10 44 379 30 349 4.58e-30 118
Msa1237090 MtrunA17_Chr1g0189901 29.226 349 203 13 43 377 30 348 6.13e-30 118
Msa1237090 MtrunA17_Chr5g0438641 26.857 350 212 10 44 379 32 351 6.66e-30 118
Msa1237090 MtrunA17_Chr3g0099151 28.721 383 222 14 11 376 58 406 1.02e-29 119
Msa1237090 MtrunA17_Chr3g0077571 25.798 376 237 11 27 391 13 357 5.34e-29 115
Msa1237090 MtrunA17_Chr1g0178931 26.506 332 194 9 45 365 38 330 6.87e-29 115
Msa1237090 MtrunA17_Chr8g0380041 26.567 335 211 8 46 371 33 341 7.04e-29 115
Msa1237090 MtrunA17_Chr8g0349301 28.472 288 175 7 45 327 38 299 2.79e-28 113
Msa1237090 MtrunA17_Chr1g0156891 27.660 376 226 13 20 380 19 363 3.70e-28 113
Msa1237090 MtrunA17_Chr5g0444401 26.361 349 213 10 44 377 28 347 7.46e-28 112
Msa1237090 MtrunA17_Chr7g0275001 26.849 365 223 11 26 377 10 343 1.11e-27 112
Msa1237090 MtrunA17_Chr4g0068441 26.478 389 239 13 4 380 3 356 1.38e-27 112
Msa1237090 MtrunA17_Chr3g0120861 26.437 348 216 10 45 380 39 358 1.55e-27 112
Msa1237090 MtrunA17_Chr4g0017431 26.796 362 222 13 44 391 31 363 1.55e-27 112
Msa1237090 MtrunA17_Chr1g0178941 26.331 338 199 10 43 365 39 341 2.11e-27 111
Msa1237090 MtrunA17_Chr1g0156911 28.022 364 221 13 19 370 12 346 2.48e-27 111
Msa1237090 MtrunA17_Chr5g0438631 24.513 359 235 11 27 374 10 343 5.35e-27 110
Msa1237090 MtrunA17_Chr5g0438621 24.377 361 232 11 27 374 12 344 1.23e-26 109
Msa1237090 MtrunA17_Chr2g0294311 25.326 383 233 16 21 380 9 361 2.05e-26 108
Msa1237090 MtrunA17_Chr5g0405821 25.937 347 215 11 48 380 47 365 2.64e-26 108
Msa1237090 MtrunA17_Chr8g0371481 26.404 356 219 11 39 380 36 362 2.68e-26 108
Msa1237090 MtrunA17_Chr1g0156921 26.190 378 229 12 17 374 9 356 3.37e-26 108
Msa1237090 MtrunA17_Chr3g0099231 26.836 354 202 13 44 376 28 345 1.19e-25 107
Msa1237090 MtrunA17_Chr1g0182811 27.596 366 221 12 27 377 16 352 1.81e-25 106
Msa1237090 MtrunA17_Chr2g0283191 27.246 345 198 15 44 365 38 352 2.31e-25 105
Msa1237090 MtrunA17_Chr3g0105401 26.146 371 224 14 23 375 6 344 3.02e-25 105
Msa1237090 MtrunA17_Chr8g0371491 25.897 390 226 13 18 380 3 356 9.45e-25 103
Msa1237090 MtrunA17_Chr3g0142921 27.193 342 203 12 39 365 31 341 1.81e-24 103
Msa1237090 MtrunA17_Chr4g0046151 25.587 383 227 15 20 376 16 366 2.91e-24 102
Msa1237090 MtrunA17_Chr7g0274991 25.337 371 233 12 22 377 9 350 3.18e-24 102
Msa1237090 MtrunA17_Chr5g0434621 25.731 342 200 12 48 371 29 334 3.52e-24 102
Msa1237090 MtrunA17_Chr7g0266061 27.035 344 190 15 41 365 35 336 3.84e-24 102
Msa1237090 MtrunA17_Chr3g0092131 25.895 363 224 14 27 374 5 337 4.76e-24 102
Msa1237090 MtrunA17_Chr3g0077581 26.536 358 226 9 46 391 38 370 4.85e-24 102
Msa1237090 MtrunA17_Chr5g0437421 25.872 344 226 12 44 378 32 355 6.08e-24 101
Msa1237090 MtrunA17_Chr5g0440501 30.734 218 128 7 184 388 41 248 2.47e-23 97.8
Msa1237090 MtrunA17_Chr6g0457921 25.872 344 212 11 48 377 33 347 2.64e-23 100
Msa1237090 MtrunA17_Chr7g0215961 25.613 367 221 15 22 377 12 337 3.34e-23 99.8
Msa1237090 MtrunA17_Chr8g0371471 25.352 355 223 11 39 380 36 361 1.03e-22 98.2
Msa1237090 MtrunA17_Chr4g0027521 26.453 344 214 11 44 374 27 344 1.31e-22 97.8
Msa1237090 MtrunA17_Chr4g0008851 25.613 367 227 13 26 377 16 351 1.58e-22 97.8
Msa1237090 MtrunA17_Chr4g0060811 25.948 343 210 11 46 374 29 341 2.41e-22 97.4
Msa1237090 MtrunA17_Chr5g0420811 25.298 336 206 12 44 370 33 332 3.35e-22 96.7
Msa1237090 MtrunA17_Chr3g0085881 23.952 334 209 9 45 370 34 330 3.79e-22 96.7
Msa1237090 MtrunA17_Chr1g0189891 27.326 344 211 14 43 377 28 341 1.96e-21 94.7
Msa1237090 MtrunA17_Chr1g0156931 25.320 391 247 14 1 379 1 358 4.38e-21 93.6
Msa1237090 MtrunA17_Chr1g0156901 26.271 354 208 15 39 374 45 363 7.80e-21 93.2
Msa1237090 MtrunA17_Chr5g0405831 23.333 390 247 15 14 380 4 364 8.79e-21 92.8
Msa1237090 MtrunA17_Chr4g0027571 34.694 147 87 2 223 369 72 209 6.25e-20 87.8
Msa1237090 MtrunA17_Chr7g0229581 32.468 154 95 2 226 379 8 152 1.01e-19 85.5
Msa1237090 MtrunA17_Chr3g0142941 26.136 352 211 13 39 374 42 360 1.44e-19 89.4
Msa1237090 MtrunA17_Chr2g0284921 24.654 361 215 15 45 386 35 357 3.04e-19 88.2
Msa1237090 MtrunA17_Chr2g0285001 25.439 342 201 15 45 370 34 337 3.21e-19 88.6
Msa1237090 MtrunA17_Chr3g0085231 24.022 358 218 9 44 388 31 347 4.31e-19 87.8
Msa1237090 MtrunA17_Chr3g0104801 52.222 90 36 3 42 125 42 130 5.81e-19 84.0
Msa1237090 MtrunA17_Chr2g0301561 28.814 236 140 8 90 315 37 254 4.55e-18 83.2
Msa1237090 MtrunA17_Chr8g0380031 23.754 341 215 10 45 376 85 389 4.35e-17 82.4
Msa1237090 MtrunA17_Chr1g0157001 24.561 342 209 12 45 374 44 348 4.52e-17 82.0
Msa1237090 MtrunA17_Chr6g0455661 25.431 232 148 6 170 391 256 472 5.26e-17 82.4
Msa1237090 MtrunA17_Chr6g0459921 25.339 221 142 5 179 391 156 361 4.14e-16 79.0
Msa1237090 MtrunA17_Chr2g0284991 22.554 368 226 14 22 370 9 336 1.15e-15 77.8
Msa1237090 MtrunA17_Chr8g0370981 24.675 385 217 15 45 379 45 406 2.99e-15 77.0
Msa1237090 MtrunA17_Chr2g0284951 24.118 340 203 12 45 370 34 332 1.19e-14 74.7
Msa1237090 MtrunA17_Chr8g0370961 22.553 235 163 6 145 376 11 229 1.87e-14 72.8
Msa1237090 MtrunA17_Chr8g0370951 24.202 376 234 14 22 377 9 353 2.26e-14 73.9
Msa1237090 MtrunA17_Chr1g0189911 29.787 141 89 4 237 377 1 131 4.51e-13 66.6
Msa1237090 MtrunA17_Chr1g0178961 24.339 189 124 5 184 365 25 201 1.01e-12 67.0
Msa1237090 MtrunA17_Chr7g0273111 48.438 64 32 1 30 92 21 84 2.31e-11 60.1
Msa1237090 MtrunA17_Chr2g0284941 23.077 377 217 15 22 383 9 327 2.46e-11 64.7
Msa1237090 MtrunA17_Chr6g0469521 30.233 129 81 2 226 354 32 151 2.57e-11 61.6
Msa1237090 MtrunA17_Chr3g0106911 47.541 61 30 2 321 381 155 213 3.86e-11 62.4
Msa1237090 MtrunA17_Chr3g0106911 34.416 154 77 8 69 219 7 139 4.75e-11 62.4
Msa1237090 MtrunA17_Chr4g0018571 26.752 157 106 2 223 379 28 175 4.35e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1237090 AT4G01130.1 63.333 360 117 5 38 389 28 380 1.07e-160 457
Msa1237090 AT4G01130.2 64.748 278 91 4 38 315 28 298 1.32e-123 360
Msa1237090 AT4G01130.3 60.133 301 105 5 97 389 1 294 2.36e-121 353
Msa1237090 AT3G26430.1 41.053 380 205 5 22 389 6 378 1.03e-97 296
Msa1237090 AT5G14450.1 39.796 392 210 7 14 392 11 389 1.31e-94 289
Msa1237090 AT1G67830.1 40.608 362 191 4 40 392 26 372 3.94e-94 287
Msa1237090 AT1G56670.1 37.726 387 219 7 9 389 1 371 1.11e-81 255
Msa1237090 AT3G27950.1 40.000 365 190 9 38 391 26 372 1.95e-77 244
Msa1237090 AT1G09390.1 37.143 385 221 8 9 389 1 368 3.69e-77 243
Msa1237090 AT1G54790.3 37.772 368 208 8 27 383 14 371 5.10e-74 236
Msa1237090 AT1G54790.1 35.890 365 214 7 29 383 16 370 6.76e-71 228
Msa1237090 AT3G05180.1 38.177 351 195 7 41 380 33 372 6.29e-70 225
Msa1237090 AT3G62280.1 37.168 339 193 5 45 381 37 357 1.71e-66 216
Msa1237090 AT1G54790.2 34.439 392 209 9 29 383 16 396 1.91e-66 217
Msa1237090 AT1G31550.2 36.623 385 193 15 22 383 15 371 2.91e-62 205
Msa1237090 AT5G45910.1 36.667 360 194 10 42 383 28 371 2.87e-61 202
Msa1237090 AT1G28600.1 35.753 372 194 14 33 383 19 366 1.15e-60 201
Msa1237090 AT1G28580.1 34.805 385 204 13 23 383 12 373 1.29e-60 201
Msa1237090 AT1G28640.1 35.025 394 211 11 10 383 3 371 2.30e-60 200
Msa1237090 AT1G28590.1 33.166 398 219 12 5 383 3 372 9.47e-60 199
Msa1237090 AT1G31550.1 36.198 384 193 15 22 383 15 368 1.10e-59 199
Msa1237090 AT1G28650.1 33.676 389 228 8 9 383 1 373 1.63e-58 195
Msa1237090 AT1G28670.1 34.010 394 216 11 10 383 3 372 4.17e-57 192
Msa1237090 AT1G28660.1 36.247 389 213 13 10 383 3 371 4.86e-56 189
Msa1237090 AT1G28610.2 35.294 374 203 15 33 389 19 370 3.23e-55 187
Msa1237090 AT2G27360.1 35.135 370 201 11 33 383 21 370 3.97e-55 187
Msa1237090 AT1G28660.2 35.733 389 214 13 10 383 3 370 3.98e-55 186
Msa1237090 AT1G56670.2 36.422 313 177 7 9 315 1 297 1.31e-54 182
Msa1237090 AT1G28570.1 31.937 382 227 13 19 383 5 370 7.23e-52 178
Msa1237090 AT3G48460.1 31.328 399 214 13 22 388 8 378 1.58e-50 174
Msa1237090 AT1G28580.2 33.876 307 174 9 87 383 5 292 5.41e-45 158
Msa1237090 AT3G62280.2 36.604 265 148 5 45 307 37 283 1.35e-44 156
Msa1237090 AT5G40990.1 29.820 389 216 13 24 392 23 374 9.10e-39 143
Msa1237090 AT1G53920.1 28.934 394 226 13 1 376 7 364 3.40e-38 142
Msa1237090 AT2G23540.1 28.846 364 215 11 46 391 50 387 1.41e-33 129
Msa1237090 AT3G14225.1 30.398 352 199 11 44 376 37 361 1.71e-33 129
Msa1237090 AT1G53990.1 27.979 386 220 13 24 392 21 365 3.30e-33 128
Msa1237090 AT5G15720.1 31.014 345 184 12 46 370 32 342 4.64e-33 127
Msa1237090 AT1G53940.2 28.767 365 215 11 44 391 39 375 1.05e-32 126
Msa1237090 AT3G14225.2 29.598 348 203 11 44 376 37 357 1.55e-32 126
Msa1237090 AT1G06990.1 29.023 348 202 11 42 374 35 352 6.30e-32 124
Msa1237090 AT5G08460.1 27.348 362 219 10 35 380 40 373 6.43e-32 124
Msa1237090 AT4G26790.1 28.045 353 208 11 42 379 27 348 2.35e-31 122
Msa1237090 AT4G26790.2 28.045 353 208 11 42 379 27 348 2.35e-31 122
Msa1237090 AT4G10950.2 28.940 349 208 13 44 380 71 391 2.92e-31 123
Msa1237090 AT5G03980.1 28.729 362 199 14 23 379 9 316 3.62e-31 121
Msa1237090 AT1G28570.3 33.333 204 128 4 185 383 7 207 4.63e-31 118
Msa1237090 AT3G50400.1 28.767 365 215 13 46 391 36 374 7.01e-31 121
Msa1237090 AT1G28570.2 33.333 204 128 4 185 383 98 298 1.83e-30 119
Msa1237090 AT5G03820.1 28.571 336 206 10 49 374 38 349 3.05e-30 119
Msa1237090 AT5G03820.2 28.571 336 206 10 49 374 66 377 7.51e-30 119
Msa1237090 AT5G22810.1 29.915 351 203 12 44 379 34 356 7.57e-30 118
Msa1237090 AT1G29660.1 27.869 366 206 11 46 395 34 357 1.33e-29 118
Msa1237090 AT5G41890.1 27.882 373 212 13 46 391 33 375 3.98e-29 117
Msa1237090 AT1G71120.1 26.667 360 217 10 31 377 18 343 4.42e-29 116
Msa1237090 AT1G29670.1 27.298 359 219 11 46 391 34 363 4.73e-29 116
Msa1237090 AT5G03810.1 27.083 336 210 9 49 374 35 345 5.82e-29 116
Msa1237090 AT2G42990.1 26.816 358 218 11 26 370 12 338 9.90e-29 115
Msa1237090 AT1G29670.2 26.562 384 235 12 26 391 77 431 1.02e-28 116
Msa1237090 AT3G16370.1 28.125 352 206 11 44 379 30 350 1.27e-28 115
Msa1237090 AT5G33370.1 27.005 374 227 12 18 377 6 347 2.03e-28 114
Msa1237090 AT1G54030.1 28.190 337 179 12 43 366 51 337 2.95e-28 115
Msa1237090 AT2G19060.1 26.234 385 230 13 15 385 1 345 3.44e-28 114
Msa1237090 AT1G71691.2 27.762 353 193 10 45 376 56 367 5.01e-28 114
Msa1237090 AT4G10950.1 28.367 349 206 14 44 380 71 387 7.53e-28 114
Msa1237090 AT5G18430.1 26.203 374 228 11 18 377 8 347 9.04e-28 112
Msa1237090 AT1G75880.1 25.773 388 249 11 4 379 12 372 1.04e-27 113
Msa1237090 AT1G75880.2 25.515 388 249 11 4 379 12 371 6.84e-27 110
Msa1237090 AT1G75890.2 26.374 364 227 11 20 370 23 358 9.92e-27 110
Msa1237090 AT1G75930.1 28.342 374 216 14 14 374 1 335 1.16e-26 109
Msa1237090 AT3G04290.1 27.011 348 212 12 43 377 28 346 1.46e-26 109
Msa1237090 AT1G75920.2 28.075 374 203 13 22 374 7 335 1.52e-26 109
Msa1237090 AT2G04570.1 25.946 370 226 12 32 384 12 350 1.74e-26 109
Msa1237090 AT1G75890.3 26.374 364 227 11 20 370 52 387 1.81e-26 109
Msa1237090 AT2G19010.2 26.562 384 223 12 15 381 28 369 2.61e-26 109
Msa1237090 AT5G42170.1 27.536 345 213 10 39 374 45 361 3.17e-26 108
Msa1237090 AT1G75890.1 26.757 370 231 11 20 370 23 371 4.42e-26 108
Msa1237090 AT5G45670.1 25.905 359 226 11 46 391 31 362 1.06e-25 107
Msa1237090 AT2G19010.1 27.078 373 213 13 26 381 9 339 1.07e-25 107
Msa1237090 AT5G15720.3 29.054 296 162 9 91 370 48 311 1.09e-25 106
Msa1237090 AT3G53100.1 25.895 363 228 9 32 379 12 348 5.33e-25 105
Msa1237090 AT4G18970.2 25.414 362 224 11 46 391 30 361 2.06e-24 104
Msa1237090 AT2G19050.1 25.862 348 206 13 46 381 33 340 2.16e-24 103
Msa1237090 AT4G18970.1 25.414 362 224 11 46 391 30 361 2.52e-24 103
Msa1237090 AT4G28780.1 26.648 349 216 12 43 379 30 350 2.92e-24 103
Msa1237090 AT5G45950.1 27.219 338 202 14 45 371 41 345 3.53e-24 102
Msa1237090 AT1G20130.1 26.050 357 223 11 38 378 198 529 3.92e-24 104
Msa1237090 AT5G03610.1 24.855 346 213 8 45 379 44 353 4.08e-24 102
Msa1237090 AT1G20120.1 25.915 355 217 12 39 378 73 396 4.15e-24 103
Msa1237090 AT1G20130.2 25.779 353 229 9 38 378 178 509 6.59e-24 103
Msa1237090 AT2G31540.1 28.011 357 203 15 42 381 33 352 7.59e-24 102
Msa1237090 AT1G54020.2 24.931 361 223 10 22 374 11 331 2.32e-23 100
Msa1237090 AT1G59406.1 26.667 375 226 13 19 379 7 346 3.52e-23 99.8
Msa1237090 AT1G59030.1 26.667 375 226 13 19 379 7 346 3.52e-23 99.8
Msa1237090 AT1G58725.1 26.667 375 226 13 19 379 7 346 3.52e-23 99.8
Msa1237090 AT1G33811.1 27.072 362 223 14 45 391 35 370 5.16e-23 99.8
Msa1237090 AT2G40250.1 23.599 339 223 9 44 370 36 350 5.35e-23 99.8
Msa1237090 AT3G14820.1 28.402 338 200 12 48 374 36 342 5.40e-23 99.4
Msa1237090 AT1G75900.1 26.301 346 210 11 44 375 43 357 5.61e-23 99.8
Msa1237090 AT1G71250.1 25.852 352 215 12 44 380 41 361 9.40e-23 99.0
Msa1237090 AT1G75920.1 27.366 391 199 15 22 374 2 345 9.66e-23 98.6
Msa1237090 AT1G53940.1 28.772 285 168 8 44 317 39 299 1.08e-22 97.8
Msa1237090 AT1G75920.4 27.545 334 179 12 60 375 20 308 1.11e-22 97.8
Msa1237090 AT1G58430.1 26.163 344 216 13 42 373 33 350 1.52e-22 98.2
Msa1237090 AT5G45960.1 25.893 336 205 12 44 363 47 354 1.76e-22 98.2
Msa1237090 AT5G03600.2 27.273 374 214 16 18 380 26 352 4.07e-22 97.1
Msa1237090 AT5G63170.1 25.634 355 204 11 27 365 11 321 6.01e-22 96.3
Msa1237090 AT1G20135.1 25.876 371 214 16 15 369 1 326 8.97e-22 95.5
Msa1237090 AT5G03600.1 28.242 347 194 15 45 380 15 317 9.00e-22 95.5
Msa1237090 AT3G14220.1 27.114 343 201 12 45 376 33 337 1.45e-21 95.5
Msa1237090 AT2G30220.1 25.824 364 236 12 20 373 9 348 1.58e-21 95.5
Msa1237090 AT1G74460.1 25.069 363 229 13 26 374 4 337 3.63e-21 94.4
Msa1237090 AT2G30310.1 26.146 371 230 16 9 365 1 341 4.19e-21 94.0
Msa1237090 AT1G71691.1 26.230 305 166 9 90 376 3 266 9.42e-21 91.7
Msa1237090 AT2G24560.1 25.549 364 217 14 27 365 7 341 1.07e-20 92.8
Msa1237090 AT1G28600.2 34.300 207 99 10 33 223 19 204 1.93e-20 89.7
Msa1237090 AT1G54030.2 29.119 261 131 10 43 291 51 269 2.10e-20 91.3
Msa1237090 AT1G73610.1 25.538 372 220 11 19 374 6 336 3.10e-20 91.3
Msa1237090 AT2G03980.2 26.836 354 197 14 41 372 40 353 3.79e-20 91.3
Msa1237090 AT2G03980.3 26.836 354 197 14 41 372 40 353 3.79e-20 91.3
Msa1237090 AT2G03980.1 26.836 354 197 14 41 372 40 353 3.79e-20 91.3
Msa1237090 AT2G03980.4 26.836 354 197 14 41 372 40 353 3.79e-20 91.3
Msa1237090 AT1G23500.1 24.528 371 242 8 11 376 2 339 4.18e-20 90.9
Msa1237090 AT5G37690.1 23.464 358 230 10 26 370 9 335 8.06e-20 90.5
Msa1237090 AT1G58520.3 26.761 355 206 13 39 379 25 339 1.07e-19 89.7
Msa1237090 AT1G58525.1 26.761 355 206 13 39 379 25 339 1.07e-19 89.7
Msa1237090 AT1G54010.1 25.148 338 200 12 44 368 36 333 1.61e-19 89.7
Msa1237090 AT1G20132.1 26.879 346 207 12 44 374 61 375 2.85e-19 89.0
Msa1237090 AT5G15720.2 27.778 288 163 10 46 315 32 292 3.03e-19 88.2
Msa1237090 AT4G30140.1 24.928 345 211 11 46 381 35 340 5.04e-19 87.8
Msa1237090 AT1G71691.3 25.172 290 164 7 45 315 56 311 1.51e-18 85.9
Msa1237090 AT1G75920.3 26.146 371 183 13 22 374 7 304 2.09e-18 85.5
Msa1237090 AT1G28610.1 33.498 203 106 10 33 223 19 204 2.48e-18 84.3
Msa1237090 AT1G54000.1 24.309 362 221 15 22 370 14 335 6.03e-18 85.1
Msa1237090 AT3G09930.2 23.599 339 208 9 45 369 40 341 6.18e-18 84.7
Msa1237090 AT3G09930.1 23.599 339 208 9 45 369 40 341 6.18e-18 84.7
Msa1237090 AT2G31550.1 26.064 188 123 5 188 373 36 209 1.38e-17 81.6
Msa1237090 AT2G36325.1 24.069 349 201 11 45 374 48 351 1.13e-16 81.3
Msa1237090 AT5G33370.2 25.000 320 199 10 18 323 6 298 2.03e-16 80.1
Msa1237090 AT5G37690.2 22.626 358 225 11 26 370 9 327 4.23e-15 76.3
Msa1237090 AT2G19050.2 24.715 263 161 9 46 299 33 267 6.98e-14 72.0
Msa1237090 AT3G14210.1 25.731 342 199 15 44 370 36 337 1.53e-13 72.0
Msa1237090 AT2G24560.2 24.625 333 202 12 27 334 7 315 2.67e-13 70.5
Msa1237090 AT1G54020.1 22.535 284 177 8 95 374 1 245 3.31e-11 63.9
Msa1237090 AT1G54020.5 22.535 284 177 8 95 374 1 245 3.31e-11 63.9
Msa1237090 AT1G54020.3 22.535 284 177 8 95 374 1 245 3.31e-11 63.9
Msa1237090 AT4G16233.1 30.303 132 87 3 262 392 4 131 4.88e-11 60.5

Find 92 sgRNAs with CRISPR-Local

Find 170 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGCAAATATGGACTCAAAT+AGG 0.208570 8_2:-16339668 None:intergenic
GATCCTATTGATTGCAAATA+TGG 0.229073 8_2:-16339679 None:intergenic
CCTTGATACCAGAGGCAATT+TGG 0.257541 8_2:-16340422 None:intergenic
ATTCCTTCACCTGATATCTT+TGG 0.257780 8_2:+16340294 Msa1237090:CDS
ATAGCTAAGGCCATTCTTAA+TGG 0.262867 8_2:+16341803 Msa1237090:CDS
ATATTGCCACACAATGCTTT+AGG 0.268393 8_2:-16341701 None:intergenic
TTTCGTCATCCTACATCTTA+TGG 0.278515 8_2:+16340826 Msa1237090:CDS
CATCCCAACTCACATAGTTT+TGG 0.291777 8_2:-16341748 None:intergenic
TATTGCCACACAATGCTTTA+GGG 0.349859 8_2:-16341700 None:intergenic
TGCAAATATGGACTCAAATA+GGG 0.358310 8_2:-16339667 None:intergenic
ACTACATCTTTCTTTGTAAG+TGG 0.366369 8_2:+16339757 Msa1237090:CDS
CAATAAGATTTGTCGAACTT+TGG 0.366823 8_2:+16341951 Msa1237090:three_prime_UTR
AGTCCATATTTGCAATCAAT+AGG 0.373537 8_2:+16339676 Msa1237090:CDS
GGAGATTCAAATTCGGATAC+AGG 0.374341 8_2:+16339206 Msa1237090:CDS
AAGCTCCATTAGAGCAGAAT+TGG 0.374960 8_2:-16340803 None:intergenic
GGACACCAATTCTGCTCTAA+TGG 0.377223 8_2:+16340798 Msa1237090:CDS
ACATTTATGGTATTAAATCT+TGG 0.377620 8_2:+16340601 Msa1237090:CDS
CAACTTTGGAGATTCAAATT+CGG 0.394993 8_2:+16339199 Msa1237090:CDS
ATAGACTTTCCAAAGATATC+AGG 0.399393 8_2:-16340303 None:intergenic
CATAGTTTATGAAGAAGAAA+TGG 0.406387 8_2:-16341842 None:intergenic
TTTCAAGGAATATTCAACTT+TGG 0.420748 8_2:+16339185 Msa1237090:CDS
CCATGCAATTTACTACCAAT+GGG 0.422566 8_2:-16339043 None:intergenic
TTGCCCTTCAAATACAACTA+AGG 0.425308 8_2:+16339791 Msa1237090:CDS
AGTTGTATTTGAAGGGCAAA+AGG 0.427516 8_2:-16339787 None:intergenic
ACCATGCAATTTACTACCAA+TGG 0.430391 8_2:-16339044 None:intergenic
ATAGACATAAATCAATCAAT+AGG 0.435117 8_2:-16341875 None:intergenic
CCAAATTGCCTCTGGTATCA+AGG 0.451098 8_2:+16340422 Msa1237090:CDS
AATGAGCTCCTTTAAGATGT+TGG 0.452211 8_2:+16339085 Msa1237090:CDS
GCACAAGTAGAGGGTTTCAA+TGG 0.454154 8_2:-16340258 None:intergenic
TTTGCCTTAGTTGTATTTGA+AGG 0.454695 8_2:-16339795 None:intergenic
CCATCTGAAGAACGTCCAAC+TGG 0.456239 8_2:-16339290 None:intergenic
GGAAGCTCCACCAAGTATCC+AGG 0.461563 8_2:-16340640 None:intergenic
TTTATGAAAATCATGAACCT+TGG 0.463351 8_2:-16339833 None:intergenic
TCCATGACCACAACATGCTT+TGG 0.463440 8_2:-16341657 None:intergenic
GCAGCCAGTGGTGGTATCAA+TGG 0.466256 8_2:+16340369 Msa1237090:CDS
CCAGCACAACCTGGTCCCTA+TGG 0.472649 8_2:+16339248 Msa1237090:CDS
AGATGCTTCCCTCATTTATG+TGG 0.472692 8_2:+16340777 Msa1237090:CDS
GCAATTTGGTAGATGATTTG+AGG 0.477959 8_2:-16340408 None:intergenic
AAACTTGCAGCTGAGGCACT+TGG 0.478877 8_2:+16339640 Msa1237090:intron
GGGATGCTACCCTGGATACT+TGG 0.483418 8_2:+16340630 Msa1237090:CDS
CCATAGGGACCAGGTTGTGC+TGG 0.484792 8_2:-16339248 None:intergenic
ATCATCTACCAAATTGCCTC+TGG 0.492203 8_2:+16340414 Msa1237090:CDS
TTGAAATAAGTCATTCCATA+GGG 0.495907 8_2:-16339263 None:intergenic
GGTCCAGTGGGATGCTACCC+TGG 0.496391 8_2:+16340622 Msa1237090:CDS
CCAGTTGGACGTTCTTCAGA+TGG 0.509153 8_2:+16339290 Msa1237090:CDS
TGCTAACAAGATTATAGCTA+AGG 0.510664 8_2:+16341790 Msa1237090:CDS
TCTATTTATATGTTCTACAT+TGG 0.519833 8_2:+16340321 Msa1237090:CDS
ACCAAAGCATGTTGTGGTCA+TGG 0.521323 8_2:+16341656 Msa1237090:CDS
GTTGTATTTGAAGGGCAAAA+GGG 0.523722 8_2:-16339786 None:intergenic
TTTGAAATAAGTCATTCCAT+AGG 0.526980 8_2:-16339264 None:intergenic
CTTACAAAGAAAGATGTAGT+TGG 0.531384 8_2:-16339754 None:intergenic
ATGCTACCCTGGATACTTGG+TGG 0.535658 8_2:+16340633 Msa1237090:CDS
TCTAAGTCAGAACTAGTATG+AGG 0.536472 8_2:-16340661 None:intergenic
GCATGTTGTGGTCATGGAGG+GGG 0.536482 8_2:+16341662 Msa1237090:CDS
TTGCCTTAGTTGTATTTGAA+GGG 0.537401 8_2:-16339794 None:intergenic
CAAAACTATGTGAGTTGGGA+TGG 0.538942 8_2:+16341749 Msa1237090:CDS
AAGCATGTTGTGGTCATGGA+GGG 0.551557 8_2:+16341660 Msa1237090:CDS
ACTTAGTGAGCCATTAAGAA+TGG 0.555401 8_2:-16341813 None:intergenic
TATATAATGTGATTCCCCAT+TGG 0.555805 8_2:+16339028 Msa1237090:five_prime_UTR
GTATTAAATCTTGGTCCAGT+GGG 0.556708 8_2:+16340610 Msa1237090:CDS
TTCTAGGAGTTATATGCACA+AGG 0.558664 8_2:+16340571 Msa1237090:intron
CAATCCATTGATACCACCAC+TGG 0.565648 8_2:-16340373 None:intergenic
CCCATTGGTAGTAAATTGCA+TGG 0.566004 8_2:+16339043 Msa1237090:exon
CACAAGTAGAGGGTTTCAAT+GGG 0.566749 8_2:-16340257 None:intergenic
GTTCATGTACCATAAGATGT+AGG 0.569383 8_2:-16340835 None:intergenic
AATGCTACAATTCAAATCCA+AGG 0.569519 8_2:+16339816 Msa1237090:CDS
AATTGGTGTCCACATAAATG+AGG 0.573639 8_2:-16340786 None:intergenic
TATCCAGGGTAGCATCCCAC+TGG 0.576811 8_2:-16340625 None:intergenic
GGTATTAAATCTTGGTCCAG+TGG 0.578970 8_2:+16340609 Msa1237090:CDS
TTGGACGTTCTTCAGATGGA+AGG 0.580592 8_2:+16339294 Msa1237090:CDS
AGCATGTTGTGGTCATGGAG+GGG 0.581931 8_2:+16341661 Msa1237090:CDS
TCAGCATTTCCAGCACAACC+TGG 0.586185 8_2:+16339239 Msa1237090:CDS
TTCAGATGGAAGGCTCATTG+TGG 0.589337 8_2:+16339304 Msa1237090:CDS
CTAGGAGTTATATGCACAAG+GGG 0.599018 8_2:+16340573 Msa1237090:intron
ATTGGTGTCCACATAAATGA+GGG 0.604615 8_2:-16340785 None:intergenic
GATTCAAATTCGGATACAGG+TGG 0.612757 8_2:+16339209 Msa1237090:CDS
CACAGTACCAAAGCATGTTG+TGG 0.617395 8_2:+16341650 Msa1237090:CDS
AGTTCTGACTTAGATGAACA+TGG 0.622431 8_2:+16340670 Msa1237090:CDS
TAAGTCATTCCATAGGGACC+AGG 0.627391 8_2:-16339257 None:intergenic
AAAGCATGTTGTGGTCATGG+AGG 0.628243 8_2:+16341659 Msa1237090:CDS
TTTCCAAAGATATCAGGTGA+AGG 0.628282 8_2:-16340297 None:intergenic
TCTAGGAGTTATATGCACAA+GGG 0.628436 8_2:+16340572 Msa1237090:intron
GAAGCTCCACCAAGTATCCA+GGG 0.631396 8_2:-16340639 None:intergenic
TACTCTAACCTTGATACCAG+AGG 0.652573 8_2:-16340430 None:intergenic
TTTGACCCTAAAGCATTGTG+TGG 0.654114 8_2:+16341695 Msa1237090:CDS
AGTTGGCAAAAGTACAGTAG+AGG 0.657718 8_2:-16339737 None:intergenic
AGTTTATGAAGAAGAAATGG+AGG 0.667290 8_2:-16341839 None:intergenic
TAGGATCAGACTACACACAT+GGG 0.670588 8_2:+16339695 Msa1237090:CDS
ATAGGATCAGACTACACACA+TGG 0.682252 8_2:+16339694 Msa1237090:CDS
CATGCAATTTACTACCAATG+GGG 0.715076 8_2:-16339042 None:intergenic
AGGATCAGACTACACACATG+GGG 0.718068 8_2:+16339696 Msa1237090:CDS
TAGGAGTTATATGCACAAGG+GGG 0.765966 8_2:+16340574 Msa1237090:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATCATATATAATACATTAA+AGG - chr8_2:16340902-16340921 None:intergenic 10.0%
!!! AATTTCTAAATATTTTTGTT+GGG + chr8_2:16341066-16341085 Msa1237090:intron 10.0%
!! AATTAATATGAATATCAAAT+TGG - chr8_2:16341244-16341263 None:intergenic 10.0%
!!! GATATTTTACTTTTTTTAAA+AGG - chr8_2:16341331-16341350 None:intergenic 10.0%
!! ATATGATATATTTCAAATTT+CGG + chr8_2:16341491-16341510 Msa1237090:intron 10.0%
!! AACAAATAATATATGAAATG+TGG - chr8_2:16339617-16339636 None:intergenic 15.0%
!!! AATCACATTTAAGTTATTTA+TGG - chr8_2:16339880-16339899 None:intergenic 15.0%
!! TTATTAAAATTAACAAACCA+AGG - chr8_2:16340865-16340884 None:intergenic 15.0%
!! TTCAATTGAAATATTTGAAT+TGG - chr8_2:16341039-16341058 None:intergenic 15.0%
!! AAAAATATTTAGAAATTGAG+AGG - chr8_2:16341063-16341082 None:intergenic 15.0%
!!! CAATTTCTAAATATTTTTGT+TGG + chr8_2:16341065-16341084 Msa1237090:intron 15.0%
!! TCTATGTAAATTATATTGTT+TGG - chr8_2:16341384-16341403 None:intergenic 15.0%
!! TATACATAAGAGATAACTAA+CGG - chr8_2:16339517-16339536 None:intergenic 20.0%
!! TATAAATTAGTCAAGAACTA+AGG - chr8_2:16340146-16340165 None:intergenic 20.0%
!! TCTATTTATATGTTCTACAT+TGG + chr8_2:16340321-16340340 Msa1237090:CDS 20.0%
!!! TGGATGTTGTATATTATTTT+AGG + chr8_2:16340467-16340486 Msa1237090:intron 20.0%
!! ACATTTATGGTATTAAATCT+TGG + chr8_2:16340601-16340620 Msa1237090:CDS 20.0%
!! GTTCATTTATAATGACTAAA+AGG - chr8_2:16340928-16340947 None:intergenic 20.0%
!!! TGAAGTTTAGAACATTTATA+GGG + chr8_2:16341185-16341204 Msa1237090:intron 20.0%
!! TTAAGTCAGAAATATGATTA+AGG - chr8_2:16341295-16341314 None:intergenic 20.0%
!!! TACAACATGAGTTTTTTTAT+AGG - chr8_2:16341446-16341465 None:intergenic 20.0%
!!! ATCATATTATTTTATGCATG+TGG - chr8_2:16341478-16341497 None:intergenic 20.0%
!! ATAGACATAAATCAATCAAT+AGG - chr8_2:16341878-16341897 None:intergenic 20.0%
! TTTCAAGGAATATTCAACTT+TGG + chr8_2:16339185-16339204 Msa1237090:CDS 25.0%
! TTGAAATAAGTCATTCCATA+GGG - chr8_2:16339266-16339285 None:intergenic 25.0%
!! TTTGAAATAAGTCATTCCAT+AGG - chr8_2:16339267-16339286 None:intergenic 25.0%
! ACTTATTTCAAAAAACCAGT+TGG + chr8_2:16339275-16339294 Msa1237090:CDS 25.0%
!!! ATTGTGGATTTTTTAGGTAA+TGG + chr8_2:16339320-16339339 Msa1237090:intron 25.0%
! ACCTCAAATAATATTGCATT+CGG - chr8_2:16339398-16339417 None:intergenic 25.0%
! TCAATGTTTGAATTTCGATT+GGG - chr8_2:16339450-16339469 None:intergenic 25.0%
! ATCAATGTTTGAATTTCGAT+TGG - chr8_2:16339451-16339470 None:intergenic 25.0%
! ATACATAAGAGATAACTAAC+GGG - chr8_2:16339516-16339535 None:intergenic 25.0%
! TTTATGAAAATCATGAACCT+TGG - chr8_2:16339836-16339855 None:intergenic 25.0%
!! GTTCATGATTTTCATAAAAG+AGG + chr8_2:16339838-16339857 Msa1237090:CDS 25.0%
!!! ATATATTTCTAGTCCCTATT+AGG - chr8_2:16340181-16340200 None:intergenic 25.0%
! GTTGAATATACGAAATTTCT+AGG + chr8_2:16340555-16340574 Msa1237090:intron 25.0%
! AAAATTAACAAACCAAGGAA+AGG - chr8_2:16340860-16340879 None:intergenic 25.0%
!!! AATTGCTCACTTTTTGAATT+CGG - chr8_2:16341163-16341182 None:intergenic 25.0%
!! GTGAAGTTTAGAACATTTAT+AGG + chr8_2:16341184-16341203 Msa1237090:intron 25.0%
!!! GTTACAAGTAGTTATTTCTA+AGG + chr8_2:16341534-16341553 Msa1237090:intron 25.0%
! CATAGTTTATGAAGAAGAAA+TGG - chr8_2:16341845-16341864 None:intergenic 25.0%
TATATAATGTGATTCCCCAT+TGG + chr8_2:16339028-16339047 Msa1237090:five_prime_UTR 30.0%
! TGCATTTTCCAACATCTTAA+AGG - chr8_2:16339096-16339115 None:intergenic 30.0%
! CAACTTTGGAGATTCAAATT+CGG + chr8_2:16339199-16339218 Msa1237090:CDS 30.0%
ATAATATTGCATTCGGTTGA+AGG - chr8_2:16339391-16339410 None:intergenic 30.0%
ACCGAATGCAATATTATTTG+AGG + chr8_2:16339394-16339413 Msa1237090:intron 30.0%
ACGTGTCTACATTTAGTATT+TGG - chr8_2:16339425-16339444 None:intergenic 30.0%
TGCAAATATGGACTCAAATA+GGG - chr8_2:16339670-16339689 None:intergenic 30.0%
TTGCAAATATGGACTCAAAT+AGG - chr8_2:16339671-16339690 None:intergenic 30.0%
AGTCCATATTTGCAATCAAT+AGG + chr8_2:16339676-16339695 Msa1237090:CDS 30.0%
! GATCCTATTGATTGCAAATA+TGG - chr8_2:16339682-16339701 None:intergenic 30.0%
CTTACAAAGAAAGATGTAGT+TGG - chr8_2:16339757-16339776 None:intergenic 30.0%
ACTACATCTTTCTTTGTAAG+TGG + chr8_2:16339757-16339776 Msa1237090:CDS 30.0%
TTGCCTTAGTTGTATTTGAA+GGG - chr8_2:16339797-16339816 None:intergenic 30.0%
TTTGCCTTAGTTGTATTTGA+AGG - chr8_2:16339798-16339817 None:intergenic 30.0%
AATGCTACAATTCAAATCCA+AGG + chr8_2:16339816-16339835 Msa1237090:CDS 30.0%
! TTTCAAAATTTTATCCGTGC+CGG + chr8_2:16340057-16340076 Msa1237090:intron 30.0%
GACTCAAAACCAATGAATTA+CGG - chr8_2:16340124-16340143 None:intergenic 30.0%
TACTAACTTCTAGTCCTAAT+AGG + chr8_2:16340164-16340183 Msa1237090:intron 30.0%
ACTAACTTCTAGTCCTAATA+GGG + chr8_2:16340165-16340184 Msa1237090:intron 30.0%
! TGAAGGAATCTTGATTTTTG+AGG - chr8_2:16340283-16340302 None:intergenic 30.0%
ATAGACTTTCCAAAGATATC+AGG - chr8_2:16340306-16340325 None:intergenic 30.0%
AGAGTAGATATTTCATGTCA+TGG + chr8_2:16340447-16340466 Msa1237090:intron 30.0%
! ACACTCTAAAGAAATGCAAA+TGG - chr8_2:16340986-16341005 None:intergenic 30.0%
! TATTTCTGACTTAATGCAAC+TGG + chr8_2:16341301-16341320 Msa1237090:intron 30.0%
AACACAAATTGAAACCGTAA+AGG - chr8_2:16341612-16341631 None:intergenic 30.0%
TGCTAACAAGATTATAGCTA+AGG + chr8_2:16341790-16341809 Msa1237090:CDS 30.0%
AGTTTATGAAGAAGAAATGG+AGG - chr8_2:16341842-16341861 None:intergenic 30.0%
CAATAAGATTTGTCGAACTT+TGG + chr8_2:16341951-16341970 Msa1237090:three_prime_UTR 30.0%
CATGCAATTTACTACCAATG+GGG - chr8_2:16339045-16339064 None:intergenic 35.0%
CCATGCAATTTACTACCAAT+GGG - chr8_2:16339046-16339065 None:intergenic 35.0%
ACCATGCAATTTACTACCAA+TGG - chr8_2:16339047-16339066 None:intergenic 35.0%
!! AATGAGCTCCTTTAAGATGT+TGG + chr8_2:16339085-16339104 Msa1237090:CDS 35.0%
! TGCTCAAACTGTGATTTTCA+AGG + chr8_2:16339170-16339189 Msa1237090:CDS 35.0%
!!! AGGCTCATTGTGGATTTTTT+AGG + chr8_2:16339314-16339333 Msa1237090:CDS 35.0%
TGTCCAACACATGAGAAAAT+TGG + chr8_2:16339589-16339608 Msa1237090:intron 35.0%
! GAACCAATTTTCTCATGTGT+TGG - chr8_2:16339595-16339614 None:intergenic 35.0%
GTTGTATTTGAAGGGCAAAA+GGG - chr8_2:16339789-16339808 None:intergenic 35.0%
AGTTGTATTTGAAGGGCAAA+AGG - chr8_2:16339790-16339809 None:intergenic 35.0%
TTGCCCTTCAAATACAACTA+AGG + chr8_2:16339791-16339810 Msa1237090:CDS 35.0%
!!! ATTTTTGAGGCACAAGTAGA+GGG - chr8_2:16340270-16340289 None:intergenic 35.0%
ATTCCTTCACCTGATATCTT+TGG + chr8_2:16340294-16340313 Msa1237090:CDS 35.0%
TTTCCAAAGATATCAGGTGA+AGG - chr8_2:16340300-16340319 None:intergenic 35.0%
GCAATTTGGTAGATGATTTG+AGG - chr8_2:16340411-16340430 None:intergenic 35.0%
AGGCTACAATCTTCACAATT+AGG + chr8_2:16340487-16340506 Msa1237090:intron 35.0%
! TTCTAGGAGTTATATGCACA+AGG + chr8_2:16340571-16340590 Msa1237090:intron 35.0%
TCTAGGAGTTATATGCACAA+GGG + chr8_2:16340572-16340591 Msa1237090:intron 35.0%
GTATTAAATCTTGGTCCAGT+GGG + chr8_2:16340610-16340629 Msa1237090:CDS 35.0%
TCTAAGTCAGAACTAGTATG+AGG - chr8_2:16340664-16340683 None:intergenic 35.0%
! AGTTCTGACTTAGATGAACA+TGG + chr8_2:16340670-16340689 Msa1237090:CDS 35.0%
! ATTGGTGTCCACATAAATGA+GGG - chr8_2:16340788-16340807 None:intergenic 35.0%
! AATTGGTGTCCACATAAATG+AGG - chr8_2:16340789-16340808 None:intergenic 35.0%
TTTCGTCATCCTACATCTTA+TGG + chr8_2:16340826-16340845 Msa1237090:CDS 35.0%
GTTCATGTACCATAAGATGT+AGG - chr8_2:16340838-16340857 None:intergenic 35.0%
TAGAGTGTGTGTTTGAATGA+AGG + chr8_2:16340998-16341017 Msa1237090:intron 35.0%
TAAAGGATTCATCACACTTG+TGG - chr8_2:16341595-16341614 None:intergenic 35.0%
CAAGTGTGATGAATCCTTTA+CGG + chr8_2:16341595-16341614 Msa1237090:intron 35.0%
ACGGTTTCAATTTGTGTTCT+TGG + chr8_2:16341614-16341633 Msa1237090:intron 35.0%
TATTGCCACACAATGCTTTA+GGG - chr8_2:16341703-16341722 None:intergenic 35.0%
ATATTGCCACACAATGCTTT+AGG - chr8_2:16341704-16341723 None:intergenic 35.0%
! ATCCCAACTCACATAGTTTT+GGG - chr8_2:16341750-16341769 None:intergenic 35.0%
ATAGCTAAGGCCATTCTTAA+TGG + chr8_2:16341803-16341822 Msa1237090:CDS 35.0%
ACTTAGTGAGCCATTAAGAA+TGG - chr8_2:16341816-16341835 None:intergenic 35.0%
! CCCATTGGTAGTAAATTGCA+TGG + chr8_2:16339043-16339062 Msa1237090:exon 40.0%
GGAGATTCAAATTCGGATAC+AGG + chr8_2:16339206-16339225 Msa1237090:CDS 40.0%
GATTCAAATTCGGATACAGG+TGG + chr8_2:16339209-16339228 Msa1237090:CDS 40.0%
ATAGGATCAGACTACACACA+TGG + chr8_2:16339694-16339713 Msa1237090:CDS 40.0%
TAGGATCAGACTACACACAT+GGG + chr8_2:16339695-16339714 Msa1237090:CDS 40.0%
! AGTTGGCAAAAGTACAGTAG+AGG - chr8_2:16339740-16339759 None:intergenic 40.0%
TGTCTGTGTCCGTAATTCAT+TGG + chr8_2:16340112-16340131 Msa1237090:intron 40.0%
CACAAGTAGAGGGTTTCAAT+GGG - chr8_2:16340260-16340279 None:intergenic 40.0%
!!! GATTTTTGAGGCACAAGTAG+AGG - chr8_2:16340271-16340290 None:intergenic 40.0%
ACTTCAAAAATAGCAGCCAG+TGG + chr8_2:16340357-16340376 Msa1237090:CDS 40.0%
ATCATCTACCAAATTGCCTC+TGG + chr8_2:16340414-16340433 Msa1237090:CDS 40.0%
TACTCTAACCTTGATACCAG+AGG - chr8_2:16340433-16340452 None:intergenic 40.0%
CTAGGAGTTATATGCACAAG+GGG + chr8_2:16340573-16340592 Msa1237090:intron 40.0%
TAGGAGTTATATGCACAAGG+GGG + chr8_2:16340574-16340593 Msa1237090:intron 40.0%
GGTATTAAATCTTGGTCCAG+TGG + chr8_2:16340609-16340628 Msa1237090:CDS 40.0%
AGATGCTTCCCTCATTTATG+TGG + chr8_2:16340777-16340796 Msa1237090:CDS 40.0%
AAGCTCCATTAGAGCAGAAT+TGG - chr8_2:16340806-16340825 None:intergenic 40.0%
ATGGTACATGAACCTTTCCT+TGG + chr8_2:16340845-16340864 Msa1237090:intron 40.0%
TCAATTTGTGTTCTTGGAGC+AGG + chr8_2:16341620-16341639 Msa1237090:intron 40.0%
!! TTTGACCCTAAAGCATTGTG+TGG + chr8_2:16341695-16341714 Msa1237090:CDS 40.0%
!! TCCCAACTCACATAGTTTTG+GGG - chr8_2:16341749-16341768 None:intergenic 40.0%
! CATCCCAACTCACATAGTTT+TGG - chr8_2:16341751-16341770 None:intergenic 40.0%
! CAAAACTATGTGAGTTGGGA+TGG + chr8_2:16341749-16341768 Msa1237090:CDS 40.0%
TAAGTCATTCCATAGGGACC+AGG - chr8_2:16339260-16339279 None:intergenic 45.0%
TTGGACGTTCTTCAGATGGA+AGG + chr8_2:16339294-16339313 Msa1237090:CDS 45.0%
TTCAGATGGAAGGCTCATTG+TGG + chr8_2:16339304-16339323 Msa1237090:CDS 45.0%
ACGGGATTGAGTCTAACAGA+AGG - chr8_2:16339498-16339517 None:intergenic 45.0%
TGTTGCTAAACTTGCAGCTG+AGG + chr8_2:16339633-16339652 Msa1237090:intron 45.0%
AGGATCAGACTACACACATG+GGG + chr8_2:16339696-16339715 Msa1237090:CDS 45.0%
!! ATGTTTTGAGCTCTGCTGCA+CGG + chr8_2:16339937-16339956 Msa1237090:intron 45.0%
GCACGGATATCTCTGATTGA+AGG + chr8_2:16339954-16339973 Msa1237090:intron 45.0%
GCACAAGTAGAGGGTTTCAA+TGG - chr8_2:16340261-16340280 None:intergenic 45.0%
TCAAAAATAGCAGCCAGTGG+TGG + chr8_2:16340360-16340379 Msa1237090:CDS 45.0%
CAATCCATTGATACCACCAC+TGG - chr8_2:16340376-16340395 None:intergenic 45.0%
CCTTGATACCAGAGGCAATT+TGG - chr8_2:16340425-16340444 None:intergenic 45.0%
CCAAATTGCCTCTGGTATCA+AGG + chr8_2:16340422-16340441 Msa1237090:CDS 45.0%
ACAAGGGGGACGTACATTTA+TGG + chr8_2:16340588-16340607 Msa1237090:CDS 45.0%
GGACACCAATTCTGCTCTAA+TGG + chr8_2:16340798-16340817 Msa1237090:CDS 45.0%
CACAGTACCAAAGCATGTTG+TGG + chr8_2:16341650-16341669 Msa1237090:CDS 45.0%
ACCAAAGCATGTTGTGGTCA+TGG + chr8_2:16341656-16341675 Msa1237090:CDS 45.0%
TCCATGACCACAACATGCTT+TGG - chr8_2:16341660-16341679 None:intergenic 45.0%
AAAGCATGTTGTGGTCATGG+AGG + chr8_2:16341659-16341678 Msa1237090:CDS 45.0%
AAGCATGTTGTGGTCATGGA+GGG + chr8_2:16341660-16341679 Msa1237090:CDS 45.0%
ACCCCCAAAACTATGTGAGT+TGG + chr8_2:16341744-16341763 Msa1237090:CDS 45.0%
!!! CCCAACTCACATAGTTTTGG+GGG - chr8_2:16341748-16341767 None:intergenic 45.0%
CCCCCAAAACTATGTGAGTT+GGG + chr8_2:16341745-16341764 Msa1237090:CDS 45.0%
!! TTATAAACAAAAAATTATAT+TGG + chr8_2:16341567-16341586 Msa1237090:intron 5.0%
TCAGCATTTCCAGCACAACC+TGG + chr8_2:16339239-16339258 Msa1237090:CDS 50.0%
CCATCTGAAGAACGTCCAAC+TGG - chr8_2:16339293-16339312 None:intergenic 50.0%
CCAGTTGGACGTTCTTCAGA+TGG + chr8_2:16339290-16339309 Msa1237090:CDS 50.0%
! AAACTTGCAGCTGAGGCACT+TGG + chr8_2:16339640-16339659 Msa1237090:intron 50.0%
CATGATACGTGTCGAACACC+AGG - chr8_2:16339985-16340004 None:intergenic 50.0%
CACAAGTGTCAGTGTCGTGT+CGG - chr8_2:16340015-16340034 None:intergenic 50.0%
ATGCTACCCTGGATACTTGG+TGG + chr8_2:16340633-16340652 Msa1237090:CDS 50.0%
GAAGCTCCACCAAGTATCCA+GGG - chr8_2:16340642-16340661 None:intergenic 50.0%
AGCATGTTGTGGTCATGGAG+GGG + chr8_2:16341661-16341680 Msa1237090:CDS 50.0%
! CTCTGATTGAAGGCGTGTCC+TGG + chr8_2:16339964-16339983 Msa1237090:intron 55.0%
TGACACTGACACAGACACGC+CGG - chr8_2:16340079-16340098 None:intergenic 55.0%
GCAGCCAGTGGTGGTATCAA+TGG + chr8_2:16340369-16340388 Msa1237090:CDS 55.0%
TATCCAGGGTAGCATCCCAC+TGG - chr8_2:16340628-16340647 None:intergenic 55.0%
GGGATGCTACCCTGGATACT+TGG + chr8_2:16340630-16340649 Msa1237090:CDS 55.0%
GGAAGCTCCACCAAGTATCC+AGG - chr8_2:16340643-16340662 None:intergenic 55.0%
GCATGTTGTGGTCATGGAGG+GGG + chr8_2:16341662-16341681 Msa1237090:CDS 55.0%
CCATAGGGACCAGGTTGTGC+TGG - chr8_2:16339251-16339270 None:intergenic 60.0%
CCAGCACAACCTGGTCCCTA+TGG + chr8_2:16339248-16339267 Msa1237090:CDS 60.0%
CTGACACAGACACGCCGGCA+CGG - chr8_2:16340074-16340093 None:intergenic 65.0%
GGTCCAGTGGGATGCTACCC+TGG + chr8_2:16340622-16340641 Msa1237090:CDS 65.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 16339014 16342013 16339014 ID=Msa1237090;Name=Msa1237090
chr8_2 mRNA 16339014 16342013 16339014 ID=Msa1237090-mRNA-1;Parent=Msa1237090;Name=Msa1237090-mRNA-1;_AED=0.08;_eAED=0.08;_QI=48|1|1|1|1|1|5|127|395
chr8_2 exon 16339014 16339335 16339014 ID=Msa1237090-mRNA-1:exon:6106;Parent=Msa1237090-mRNA-1
chr8_2 exon 16339650 16339859 16339650 ID=Msa1237090-mRNA-1:exon:6107;Parent=Msa1237090-mRNA-1
chr8_2 exon 16340256 16340443 16340256 ID=Msa1237090-mRNA-1:exon:6108;Parent=Msa1237090-mRNA-1
chr8_2 exon 16340577 16340847 16340577 ID=Msa1237090-mRNA-1:exon:6109;Parent=Msa1237090-mRNA-1
chr8_2 exon 16341642 16342013 16341642 ID=Msa1237090-mRNA-1:exon:6110;Parent=Msa1237090-mRNA-1
chr8_2 five_prime_UTR 16339014 16339061 16339014 ID=Msa1237090-mRNA-1:five_prime_utr;Parent=Msa1237090-mRNA-1
chr8_2 CDS 16339062 16339335 16339062 ID=Msa1237090-mRNA-1:cds;Parent=Msa1237090-mRNA-1
chr8_2 CDS 16339650 16339859 16339650 ID=Msa1237090-mRNA-1:cds;Parent=Msa1237090-mRNA-1
chr8_2 CDS 16340256 16340443 16340256 ID=Msa1237090-mRNA-1:cds;Parent=Msa1237090-mRNA-1
chr8_2 CDS 16340577 16340847 16340577 ID=Msa1237090-mRNA-1:cds;Parent=Msa1237090-mRNA-1
chr8_2 CDS 16341642 16341886 16341642 ID=Msa1237090-mRNA-1:cds;Parent=Msa1237090-mRNA-1
chr8_2 three_prime_UTR 16341887 16342013 16341887 ID=Msa1237090-mRNA-1:three_prime_utr;Parent=Msa1237090-mRNA-1
Gene Sequence

>Msa1237090

ATGGTGAAGATATCTTTAAAAAAAATGAGCTCCTTTAAGATGTTGGAAAATGCATTTTTTAAGCTCTTATTAAATTGCATAGTGATATCTTCATTGATCATTTCAAGTTGCTCAAACTGTGATTTTCAAGGAATATTCAACTTTGGAGATTCAAATTCGGATACAGGTGGATTTGATTCAGCATTTCCAGCACAACCTGGTCCCTATGGAATGACTTATTTCAAAAAACCAGTTGGACGTTCTTCAGATGGAAGGCTCATTGTGGATTTTTTAGCTGAGGCACTTGGATTGCCCTATTTGAGTCCATATTTGCAATCAATAGGATCAGACTACACACATGGGGCAAACTTTGCAACATCAGCCTCTACTGTACTTTTGCCAACTACATCTTTCTTTGTAAGTGGACTCAGCCCTTTTGCCCTTCAAATACAACTAAGGCAAATGCTACAATTCAAATCCAAGGTTCATGATTTTCATAAAAGAGACCCATTGAAACCCTCTACTTGTGCCTCAAAAATCAAGATTCCTTCACCTGATATCTTTGGAAAGTCTATTTATATGTTCTACATTGGTCAAAATGACTTCACTTCAAAAATAGCAGCCAGTGGTGGTATCAATGGATTGAAGAACTACTTGCCTCAAATCATCTACCAAATTGCCTCTGGTATCAAGGAGTTATATGCACAAGGGGGACGTACATTTATGGTATTAAATCTTGGTCCAGTGGGATGCTACCCTGGATACTTGGTGGAGCTTCCTCATACTAGTTCTGACTTAGATGAACATGGATGCATAATTTCTTATAACAATGCTGTAGATGATTACAACAAATTGTTGAGAGAGACATTGACTCAAACTAGACAAAGTTTATCAGATGCTTCCCTCATTTATGTGGACACCAATTCTGCTCTAATGGAGCTTTTTCGTCATCCTACATCTTATGGACTAAAGCACAGTACCAAAGCATGTTGTGGTCATGGAGGGGGAGATTACAACTTTGACCCTAAAGCATTGTGTGGCAATATGCTTGCAAGTGCATGTGAAGACCCCCAAAACTATGTGAGTTGGGATGGTATTCATTTCACAGAAGCTGCTAACAAGATTATAGCTAAGGCCATTCTTAATGGCTCACTAAGTGATCCTCCATTTCTTCTTCATAAACTATGTGATCTTCAACCTATTGATTGA

Protein sequence

>Msa1237090

MVKISLKKMSSFKMLENAFFKLLLNCIVISSLIISSCSNCDFQGIFNFGDSNSDTGGFDSAFPAQPGPYGMTYFKKPVGRSSDGRLIVDFLAEALGLPYLSPYLQSIGSDYTHGANFATSASTVLLPTTSFFVSGLSPFALQIQLRQMLQFKSKVHDFHKRDPLKPSTCASKIKIPSPDIFGKSIYMFYIGQNDFTSKIAASGGINGLKNYLPQIIYQIASGIKELYAQGGRTFMVLNLGPVGCYPGYLVELPHTSSDLDEHGCIISYNNAVDDYNKLLRETLTQTRQSLSDASLIYVDTNSALMELFRHPTSYGLKHSTKACCGHGGGDYNFDPKALCGNMLASACEDPQNYVSWDGIHFTEAANKIIAKAILNGSLSDPPFLLHKLCDLQPID*