AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1280310

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1280310 MtrunA17_Chr8g0350391 91.111 675 23 3 1 675 1 638 0.0 1265
Msa1280310 MtrunA17_Chr7g0246701 72.632 665 138 4 14 675 10 633 0.0 1011
Msa1280310 MtrunA17_Chr6g0472571 60.395 659 214 5 18 675 22 634 0.0 837
Msa1280310 MtrunA17_Chr1g0203741 58.706 649 213 6 23 668 22 618 0.0 807
Msa1280310 MtrunA17_Chr8g0388881 55.061 652 248 7 24 675 22 628 0.0 739
Msa1280310 MtrunA17_Chr4g0055031 51.783 645 252 8 27 669 18 605 0.0 695
Msa1280310 MtrunA17_Chr8g0361791 51.087 644 254 8 27 668 17 601 0.0 676
Msa1280310 MtrunA17_Chr5g0416991 49.147 645 266 8 27 669 17 601 0.0 654
Msa1280310 MtrunA17_Chr3g0092501 48.686 647 262 8 26 669 20 599 0.0 632
Msa1280310 MtrunA17_Chr7g0214551 48.490 563 253 5 104 661 35 565 0.0 589
Msa1280310 MtrunA17_Chr8g0369481 44.759 601 283 12 72 667 32 588 4.51e-178 520
Msa1280310 MtrunA17_Chr5g0409411 45.179 560 262 10 112 667 72 590 4.41e-168 494
Msa1280310 MtrunA17_Chr8g0350351 42.246 561 267 10 115 668 91 601 1.23e-160 475
Msa1280310 MtrunA17_Chr7g0246681 43.316 561 259 10 115 667 78 587 8.30e-159 470
Msa1280310 MtrunA17_Chr1g0183721 39.826 575 276 11 112 667 62 585 6.37e-147 440
Msa1280310 MtrunA17_Chr5g0435751 40.708 565 259 12 108 664 121 617 2.01e-143 432
Msa1280310 MtrunA17_Chr3g0112341 41.312 564 273 14 115 669 156 670 2.01e-143 433
Msa1280310 MtrunA17_Chr1g0167381 40.700 543 265 10 112 643 92 588 8.34e-142 427
Msa1280310 MtrunA17_Chr1g0187601 40.809 544 265 10 112 644 91 588 2.27e-138 419
Msa1280310 MtrunA17_Chr1g0159741 40.250 559 274 15 119 666 149 658 2.59e-134 409
Msa1280310 MtrunA17_Chr3g0113981 38.710 558 275 15 121 671 175 672 5.00e-127 391
Msa1280310 MtrunA17_Chr3g0130381 39.016 569 277 17 121 673 268 782 1.27e-123 385
Msa1280310 MtrunA17_Chr5g0437501 36.126 573 282 16 116 667 96 605 7.07e-122 375
Msa1280310 MtrunA17_Chr3g0125511 37.653 571 283 18 121 673 233 748 1.76e-120 376
Msa1280310 MtrunA17_Chr1g0171781 33.817 689 343 19 5 668 4 604 5.07e-119 368
Msa1280310 MtrunA17_Chr8g0384431 38.251 549 267 18 121 650 298 793 1.26e-117 370
Msa1280310 MtrunA17_Chr8g0372471 36.720 561 284 16 121 667 387 890 8.65e-111 355
Msa1280310 MtrunA17_Chr1g0155141 34.281 563 288 17 118 667 206 699 3.29e-92 301
Msa1280310 MtrunA17_Chr3g0115931 31.229 602 311 16 107 667 149 688 1.32e-89 293
Msa1280310 MtrunA17_Chr5g0426281 30.872 596 313 17 106 667 140 670 1.15e-87 288
Msa1280310 MtrunA17_Chr5g0404771 45.679 243 105 7 121 346 329 561 6.37e-66 227
Msa1280310 MtrunA17_Chr4g0043121 32.919 322 198 7 111 423 85 397 7.66e-53 188
Msa1280310 MtrunA17_Chr5g0404761 30.844 308 164 9 361 658 1 269 1.92e-43 157
Msa1280310 MtrunA17_Chr4g0043131 36.364 176 76 5 494 666 40 182 8.47e-29 113
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1280310 AT4G00750.1 65.198 658 178 6 22 675 20 630 0.0 892
Msa1280310 AT2G45750.1 63.470 657 190 4 22 675 14 623 0.0 879
Msa1280310 AT4G10440.1 56.068 651 240 6 24 674 19 623 0.0 748
Msa1280310 AT1G33170.1 54.656 655 258 5 24 672 18 639 0.0 747
Msa1280310 AT1G26850.2 51.385 650 258 8 27 672 18 613 0.0 690
Msa1280310 AT1G26850.1 51.385 650 258 8 27 672 18 613 0.0 690
Msa1280310 AT4G18030.1 51.944 643 241 8 33 669 25 605 0.0 677
Msa1280310 AT2G43200.2 48.101 553 250 6 111 662 90 606 0.0 558
Msa1280310 AT2G43200.1 48.101 553 250 6 111 662 90 606 0.0 558
Msa1280310 AT1G26850.3 51.961 510 217 7 27 532 18 503 0.0 551
Msa1280310 AT1G31850.1 45.763 590 272 11 83 667 50 596 0.0 536
Msa1280310 AT1G31850.2 45.763 590 272 11 83 667 50 596 0.0 536
Msa1280310 AT1G31850.4 45.763 590 272 11 83 667 50 596 0.0 536
Msa1280310 AT1G31850.3 45.763 590 272 11 83 667 50 596 0.0 536
Msa1280310 AT4G19120.1 45.863 556 260 9 115 667 73 590 2.49e-176 516
Msa1280310 AT4G19120.2 45.863 556 260 9 115 667 73 590 2.49e-176 516
Msa1280310 AT4G00740.1 43.234 569 265 10 111 670 77 596 8.79e-163 481
Msa1280310 AT4G00740.2 43.234 569 265 10 111 670 77 596 8.79e-163 481
Msa1280310 AT4G19120.3 49.539 434 209 7 115 545 73 499 3.32e-150 445
Msa1280310 AT2G39750.1 41.289 574 275 14 107 669 172 694 1.44e-146 442
Msa1280310 AT1G04430.1 37.640 627 314 12 28 643 20 580 4.95e-142 428
Msa1280310 AT1G04430.3 37.640 627 314 12 28 643 20 580 4.95e-142 428
Msa1280310 AT1G04430.2 37.640 627 314 12 28 643 20 580 4.95e-142 428
Msa1280310 AT5G06050.1 39.965 578 285 15 101 666 136 663 1.29e-141 429
Msa1280310 AT1G77260.1 39.721 574 282 15 103 665 134 654 4.92e-138 419
Msa1280310 AT4G14360.1 40.147 543 268 10 112 643 76 572 1.02e-137 417
Msa1280310 AT4G14360.2 40.147 543 268 10 112 643 76 572 1.02e-137 417
Msa1280310 AT5G14430.1 40.070 574 283 12 112 670 80 607 1.27e-136 414
Msa1280310 AT3G23300.2 38.664 569 290 12 112 667 79 601 2.18e-136 414
Msa1280310 AT3G23300.1 38.664 569 290 12 112 667 79 601 2.18e-136 414
Msa1280310 AT5G14430.2 39.721 574 285 12 112 670 80 607 1.39e-134 409
Msa1280310 AT3G56080.1 38.129 556 274 17 121 667 114 608 1.30e-121 375
Msa1280310 AT2G40280.1 37.814 558 270 18 121 667 90 581 9.99e-120 370
Msa1280310 AT1G29470.1 34.665 626 341 19 63 673 189 761 1.16e-118 372
Msa1280310 AT1G29470.2 34.665 626 341 19 63 673 189 761 1.16e-118 372
Msa1280310 AT3G51070.1 38.850 574 272 19 121 674 381 895 1.46e-118 375
Msa1280310 AT5G64030.1 37.478 563 282 17 121 667 308 816 5.40e-118 372
Msa1280310 AT2G34300.2 36.778 571 286 16 121 673 250 763 6.62e-118 370
Msa1280310 AT2G34300.3 36.778 571 286 16 121 673 250 763 6.62e-118 370
Msa1280310 AT2G34300.1 36.778 571 286 16 121 673 250 763 6.62e-118 370
Msa1280310 AT3G10200.1 35.938 576 296 13 110 668 70 589 3.87e-117 363
Msa1280310 AT5G04060.1 35.149 569 298 12 115 668 86 598 1.08e-116 362
Msa1280310 AT3G56080.2 38.980 490 237 15 121 601 114 550 2.69e-108 339
Msa1280310 AT3G10200.2 36.723 531 264 11 104 618 64 538 1.49e-107 338
Msa1280310 AT3G51070.2 39.479 499 232 16 121 601 381 827 2.05e-102 332
Msa1280310 AT1G19430.1 34.159 565 287 18 118 667 228 722 9.65e-91 298
Msa1280310 AT1G19430.3 34.159 565 287 18 118 667 228 722 9.65e-91 298
Msa1280310 AT1G13860.4 30.494 587 313 15 108 664 77 598 3.32e-85 280
Msa1280310 AT1G13860.3 30.494 587 313 15 108 664 77 598 3.32e-85 280
Msa1280310 AT1G13860.1 30.494 587 313 15 108 664 77 598 3.32e-85 280
Msa1280310 AT1G13860.5 30.494 587 313 15 108 664 77 598 3.32e-85 280
Msa1280310 AT1G78240.1 30.678 590 325 15 108 666 142 678 1.21e-81 273
Msa1280310 AT1G78240.2 30.678 590 325 15 108 666 142 678 1.21e-81 273
Msa1280310 AT2G03480.2 29.472 587 312 13 107 666 81 592 5.50e-81 268
Msa1280310 AT2G03480.1 30.034 586 321 15 107 666 81 603 7.40e-79 263
Msa1280310 AT1G13860.2 31.568 491 255 13 201 664 6 442 1.45e-73 244
Msa1280310 AT1G19430.2 33.499 403 219 14 118 506 228 595 1.13e-55 200
Msa1280310 AT2G03480.3 32.404 287 180 3 107 384 81 362 4.36e-47 172

Find 204 sgRNAs with CRISPR-Local

Find 452 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCTTGTTCTTGTAGTTTA+AGG 0.067114 8_3:+18418817 None:intergenic
CGGTAGATAAGTTTCTTTCT+AGG 0.219333 8_3:+18418373 None:intergenic
CAGTGTTTCTGCCAGTTTAT+TGG 0.229481 8_3:+18414831 None:intergenic
AATGCATACGTTGATGATAT+TGG 0.260687 8_3:-18418127 Msa1280310:CDS
CATTGAACCGGACCCAATTC+TGG 0.263748 8_3:+18418200 None:intergenic
CGCAAAATTACACCACCTTT+TGG 0.268044 8_3:+18412757 None:intergenic
TGTCTTATGTCTCAATGATT+TGG 0.268755 8_3:-18412352 Msa1280310:three_prime_UTR
CACTGGTTGATGATCCTGTT+TGG 0.271747 8_3:-18413824 Msa1280310:CDS
GGAATTGAAGTTAGTCTCTT+TGG 0.271926 8_3:+18414023 None:intergenic
CTCAAGGTGCCTCATTCCTT+GGG 0.284464 8_3:-18415891 Msa1280310:CDS
GGTTCAATGGGAACCGGTTC+AGG 0.289569 8_3:-18418186 Msa1280310:CDS
TATTATTACCAAGCCATATC+TGG 0.306114 8_3:+18414612 None:intergenic
TGGGAACCGGTTCAGGTTCC+CGG 0.309672 8_3:-18418179 Msa1280310:CDS
AACTTTCACTACTAATCCTT+GGG 0.310922 8_3:+18414000 None:intergenic
GCCGTTGTTGGTGGTGGGTC+AGG 0.312494 8_3:+18418478 None:intergenic
TGATGGTACTATTGTTGTTA+TGG 0.313842 8_3:+18418548 None:intergenic
GTCTTATGTCTCAATGATTT+GGG 0.319739 8_3:-18412351 Msa1280310:three_prime_UTR
TTTGATAAGGTCCTTCTTCA+TGG 0.322080 8_3:+18412662 None:intergenic
TCATTGGAACCTATCAAAAT+TGG 0.328039 8_3:-18413737 Msa1280310:CDS
GTTTATGACAAAACTTTCAT+AGG 0.336200 8_3:-18412553 Msa1280310:three_prime_UTR
GATTCTCAGCTAGCAGAGTT+AGG 0.338955 8_3:-18413900 Msa1280310:CDS
TACCAGCTCCGTTTGGTTAC+CGG 0.343310 8_3:-18418306 Msa1280310:CDS
CTGCGAACCAAGTTTGAAAA+TGG 0.343395 8_3:+18412291 None:intergenic
TCCTTCAAGAGCCTTTGATA+TGG 0.343800 8_3:-18415921 Msa1280310:CDS
GGAGGAGGGTTGAGAGGTGG+TGG 0.345849 8_3:+18418600 None:intergenic
CGGTTCAGGTTCCCGGGTGG+TGG 0.346840 8_3:-18418172 Msa1280310:CDS
ACAATATCAGGTGGCAAGTT+GGG 0.350253 8_3:-18416080 Msa1280310:intron
GCTCAAGGTGCCTCATTCCT+TGG 0.353928 8_3:-18415892 Msa1280310:CDS
TACTGCGTCCTGGTGGATAC+TGG 0.363456 8_3:-18414869 Msa1280310:CDS
GAAGCATATGGAGGAGGAGG+AGG 0.363490 8_3:+18418573 None:intergenic
TTGTAGCAGTCAAGCAATAC+TGG 0.370223 8_3:-18412627 Msa1280310:CDS
GCATATGGAGGAGGAGGAGG+AGG 0.372746 8_3:+18418576 None:intergenic
CAGAATTGGGTCCGGTTCAA+TGG 0.372960 8_3:-18418199 Msa1280310:CDS
TTGGTGGTGGGTCAGGGAGG+TGG 0.373596 8_3:+18418485 None:intergenic
CTCTGGCAGTGGGGTCAAAC+AGG 0.380078 8_3:+18414091 None:intergenic
AGATTGGTTAATAATATGTT+TGG 0.380836 8_3:+18418727 None:intergenic
GGAGGGTTGAGAGGTGGTGG+TGG 0.383443 8_3:+18418603 None:intergenic
CACCACCCGGGAACCTGAAC+CGG 0.386058 8_3:+18418173 None:intergenic
GGAGAGACACTGTCCCTTAC+CGG 0.387343 8_3:-18418350 Msa1280310:CDS
TTGGTTACCGGTTACCATTA+CGG 0.387657 8_3:-18418294 Msa1280310:CDS
CTCATTCCTTGGGGACAGTA+TGG 0.391794 8_3:-18415881 Msa1280310:intron
TAGTATGGAGAACATTCTTC+TGG 0.392731 8_3:-18412800 Msa1280310:CDS
GGAGGAGGAGGGTTGAGAGG+TGG 0.394565 8_3:+18418597 None:intergenic
ATGCATACGTTGATGATATT+GGG 0.395046 8_3:-18418126 Msa1280310:CDS
ACTGGTTGATGATCCTGTTT+GGG 0.396422 8_3:-18413823 Msa1280310:CDS
CGAGGTGTTCCTGCATTGAT+TGG 0.398281 8_3:-18415971 Msa1280310:CDS
ATGAGTTGAGTTTGAAGATT+AGG 0.399720 8_3:+18418868 None:intergenic
AAACTTTCACTACTAATCCT+TGG 0.399767 8_3:+18413999 None:intergenic
ACACGCGCCGTTGTTGGTGG+TGG 0.405910 8_3:+18418472 None:intergenic
AACTTTGCAATGCATATGAT+TGG 0.410264 8_3:+18414683 None:intergenic
ATTAGTAGTGAAAGTTTGAA+TGG 0.411705 8_3:-18413993 Msa1280310:CDS
TGGATTTGAAAGTGTGAACT+AGG 0.415347 8_3:+18418755 None:intergenic
ATGCCTTGCTTCTATTTGCT+AGG 0.417856 8_3:-18413713 Msa1280310:CDS
CTTGATATGAATTCTTACTT+AGG 0.419305 8_3:-18413861 Msa1280310:CDS
TGTCAGGGCCACCAATAAAC+TGG 0.422208 8_3:-18414842 Msa1280310:CDS
GGTGGATACTGGATTCTGTC+AGG 0.422593 8_3:-18414858 Msa1280310:CDS
GGAGGAGGAGGAGGGTTGAG+AGG 0.424084 8_3:+18418594 None:intergenic
ATCAGAACCGCTATTGATAC+TGG 0.431052 8_3:-18418076 Msa1280310:CDS
AGAGGTGGTGGTGGAGTAAC+CGG 0.434045 8_3:+18418612 None:intergenic
ATATATGAACGTGGACTCAT+TGG 0.439385 8_3:-18413753 Msa1280310:CDS
TGGGTCAGGGAGGTGGTGAG+TGG 0.440452 8_3:+18418492 None:intergenic
TCCACTGTTAACTCCTTATG+TGG 0.442873 8_3:+18418232 None:intergenic
GTATTAATTTCAGCCTCAAC+AGG 0.445082 8_3:+18413786 None:intergenic
ACAATGTTCATGACCCAAAC+AGG 0.446029 8_3:+18413810 None:intergenic
ACCGCTATTGATACTGGTTG+TGG 0.449655 8_3:-18418070 Msa1280310:CDS
AGGAGGCTTTGCAGCTGCAC+TGG 0.450194 8_3:-18413841 Msa1280310:CDS
CGGAGAGCCGTGACGCGGCT+TGG 0.451448 8_3:-18418267 Msa1280310:CDS
CCGTTGTTGGTGGTGGGTCA+GGG 0.452158 8_3:+18418479 None:intergenic
TACAATATCAGGTGGCAAGT+TGG 0.454628 8_3:-18416081 Msa1280310:intron
GGCAGAAACACTGGAAAGGA+TGG 0.460542 8_3:-18414821 Msa1280310:CDS
GTGGAAGCATATGGAGGAGG+AGG 0.460556 8_3:+18418570 None:intergenic
ATCATTACCTGTGTTGGTAG+AGG 0.465030 8_3:+18413069 None:intergenic
TGCCTTGCTTCTATTTGCTA+GGG 0.468748 8_3:-18413712 Msa1280310:CDS
TCAAAGGCTCTTGAAGGATA+AGG 0.470121 8_3:+18415926 None:intergenic
CTAGAAAGAAACTTATCTAC+CGG 0.470377 8_3:-18418372 Msa1280310:CDS
AAAGGTGATAAAATATAGAT+TGG 0.470588 8_3:+18418711 None:intergenic
ACATTCTTCTGGAGATGGAC+AGG 0.472069 8_3:-18412789 Msa1280310:CDS
TCAAAGAAAATACTGAGTTA+TGG 0.474678 8_3:-18413953 Msa1280310:CDS
TGAGAAACACGCGCCGTTGT+TGG 0.474848 8_3:+18418466 None:intergenic
GCCATATCAAAGGCTCTTGA+AGG 0.476108 8_3:+18415920 None:intergenic
GGTGGTGGAGTAACCGGTGG+CGG 0.477067 8_3:+18418618 None:intergenic
GATATGAATTCTTACTTAGG+AGG 0.477149 8_3:-18413858 Msa1280310:CDS
AGAATTGGGTCCGGTTCAAT+GGG 0.477439 8_3:-18418198 Msa1280310:CDS
ACGTTGTTTACCTCTGGCAG+TGG 0.477856 8_3:+18414080 None:intergenic
TGTTTCTGCCAGTTTATTGG+TGG 0.479008 8_3:+18414834 None:intergenic
CGGCTCTCCGGCCACCGTAA+TGG 0.479127 8_3:+18418280 None:intergenic
TCTTTAACGTTGTTTACCTC+TGG 0.481676 8_3:+18414074 None:intergenic
CATTGAGACATAAGACAACT+TGG 0.482261 8_3:+18412358 None:intergenic
CGTTGTTTACCTCTGGCAGT+GGG 0.485691 8_3:+18414081 None:intergenic
GGTAGATAAGTTTCTTTCTA+GGG 0.486795 8_3:+18418374 None:intergenic
GGGAACCGGTTCAGGTTCCC+GGG 0.487651 8_3:-18418178 Msa1280310:CDS
ATCCTGTGCTTCTTCACAGA+AGG 0.489745 8_3:+18414635 None:intergenic
GTATGCAAATGTTCCACATA+AGG 0.490309 8_3:-18418245 Msa1280310:CDS
AATGTGTCACAGATGTAGTA+TGG 0.494069 8_3:-18412815 Msa1280310:intron
GTCATAAGTTCGTGGGTAAG+TGG 0.497521 8_3:+18413118 None:intergenic
GGGTCCGGTTCAATGGGAAC+CGG 0.497595 8_3:-18418192 Msa1280310:CDS
GGAAACATGGTCCCACCACC+CGG 0.500756 8_3:+18418160 None:intergenic
AAGTTGATAAATCTTAAAGA+TGG 0.500800 8_3:-18418103 Msa1280310:CDS
CCGCTATTGATACTGGTTGT+GGG 0.500830 8_3:-18418069 Msa1280310:CDS
GTTGTTATGGTGGAAGCATA+TGG 0.502135 8_3:+18418561 None:intergenic
CCGGAGAGTCTCCTCCGGTA+AGG 0.504588 8_3:+18418336 None:intergenic
TTGGTTTCTGCCATATTGCA+AGG 0.507652 8_3:+18414706 None:intergenic
TGAGCTTCATGAGTATCTCT+TGG 0.508204 8_3:+18416013 None:intergenic
TGGAGTTGTGGTGGCTGTGA+TGG 0.508915 8_3:+18418531 None:intergenic
TAATAATCTTCAAGATGTAA+AGG 0.510707 8_3:+18412463 None:intergenic
TGAACCGGTTCCCATTGAAC+CGG 0.511199 8_3:+18418188 None:intergenic
GTTTGAAGATTAGGTGTAAG+TGG 0.512111 8_3:+18418877 None:intergenic
GGTTCAGGTTCCCGGGTGGT+GGG 0.512597 8_3:-18418171 Msa1280310:CDS
CAAGCCGCGTCACGGCTCTC+CGG 0.517885 8_3:+18418268 None:intergenic
GAAAGGATGGGAAAGGACTA+AGG 0.517991 8_3:-18414808 Msa1280310:CDS
ATTCCTATCATTACCTGTGT+TGG 0.518933 8_3:+18413063 None:intergenic
CGAACTTATGACTTCATACA+TGG 0.519679 8_3:-18413107 Msa1280310:CDS
TTGATATGGCTCACTGCTCA+AGG 0.520634 8_3:-18415907 Msa1280310:CDS
GAGGCTGAAATTAATACTCT+TGG 0.521230 8_3:-18413780 Msa1280310:CDS
ACCCTTCTGTGAAGAAGCAC+AGG 0.521524 8_3:-18414637 Msa1280310:CDS
CACAGGATCCAGATATGGCT+TGG 0.523470 8_3:-18414620 Msa1280310:intron
CAATAAACTGGCAGAAACAC+TGG 0.525587 8_3:-18414830 Msa1280310:CDS
AATGGTAACCGGTAACCAAA+CGG 0.526104 8_3:+18418298 None:intergenic
GGATTTGAAAGTGTGAACTA+GGG 0.530718 8_3:+18418756 None:intergenic
GCGGAGATGACGGTGGTGGA+AGG 0.532130 8_3:+18418637 None:intergenic
CCCTGACCCACCACCAACAA+CGG 0.533047 8_3:-18418479 Msa1280310:CDS
CGGAGAGTCTCCTCCGGTAA+GGG 0.533497 8_3:+18418337 None:intergenic
CTCTGCTAGCTGAGAATCAA+GGG 0.534011 8_3:+18413905 None:intergenic
ACTCTGCTAGCTGAGAATCA+AGG 0.537525 8_3:+18413904 None:intergenic
GAAACACGCGCCGTTGTTGG+TGG 0.537694 8_3:+18418469 None:intergenic
TGTAGAATACCAGCTCCGTT+TGG 0.539019 8_3:-18418313 Msa1280310:CDS
TTGCAATGCATATGATTGGT+TGG 0.540005 8_3:+18414687 None:intergenic
GATAGTGATGCCAGAGACCA+AGG 0.542805 8_3:+18418659 None:intergenic
CAATATCAGGTGGCAAGTTG+GGG 0.543071 8_3:-18416079 Msa1280310:intron
TCCTGTGCTTCTTCACAGAA+GGG 0.543718 8_3:+18414636 None:intergenic
GGAGAACATTCTTCTGGAGA+TGG 0.545202 8_3:-18412794 Msa1280310:CDS
GTCAGGGAGGTGGTGAGTGG+CGG 0.549270 8_3:+18418495 None:intergenic
CATGAACATTGTTCCTGTTG+AGG 0.551321 8_3:-18413799 Msa1280310:CDS
CGCTATTGATACTGGTTGTG+GGG 0.552452 8_3:-18418068 Msa1280310:intron
AGAAGCACAGGATCCAGATA+TGG 0.552863 8_3:-18414625 Msa1280310:CDS
GTTGATAGACTACTGCGTCC+TGG 0.555737 8_3:-18414879 Msa1280310:CDS
ATTTGCGCCACGTGGAAACA+TGG 0.556653 8_3:+18418147 None:intergenic
CCTTACCGGAGGAGACTCTC+CGG 0.558619 8_3:-18418336 Msa1280310:CDS
CACCATGTGAGGATCAGAAA+AGG 0.559630 8_3:-18418408 Msa1280310:CDS
AGAATTAGAGACCATGAAGA+AGG 0.559942 8_3:-18412673 Msa1280310:CDS
GGTGGCGGAGATGACGGTGG+TGG 0.560421 8_3:+18418633 None:intergenic
GTGGATACTGGATTCTGTCA+GGG 0.560463 8_3:-18414857 Msa1280310:CDS
CACGCGCCGTTGTTGGTGGT+GGG 0.560614 8_3:+18418473 None:intergenic
GTAAGGGACAGTGTCTCTCC+CGG 0.564561 8_3:+18418353 None:intergenic
ACCACCGTCATCTCCGCCAC+CGG 0.564856 8_3:-18418631 Msa1280310:CDS
ATGGTGGAAGCATATGGAGG+AGG 0.566141 8_3:+18418567 None:intergenic
TGGTACTATTGTTGTTATGG+TGG 0.566419 8_3:+18418551 None:intergenic
CCGGTTACCATTACGGTGGC+CGG 0.566750 8_3:-18418287 Msa1280310:CDS
CATACTGTCCCCAAGGAATG+AGG 0.567067 8_3:+18415882 None:intergenic
AGTTGATAAATCTTAAAGAT+GGG 0.567309 8_3:-18418102 Msa1280310:CDS
GCAAGAATTCCAATCAATGC+AGG 0.567592 8_3:+18415962 None:intergenic
GTAACCGGTGGCGGAGATGA+CGG 0.576488 8_3:+18418627 None:intergenic
AGGATAAGGAAGTCTTATTG+AGG 0.584502 8_3:+18415940 None:intergenic
AGAGAGATGGTTCACATGGT+GGG 0.584809 8_3:+18418440 None:intergenic
AACAACGTTAAAGAAGTTGC+TGG 0.584896 8_3:-18414065 Msa1280310:CDS
GAGACCAAGGAAGTAAAAGA+AGG 0.586234 8_3:+18418672 None:intergenic
AGTTCGTGGGTAAGTGGACA+TGG 0.592832 8_3:+18413124 None:intergenic
ACGTATGCATTTGCGCCACG+TGG 0.597146 8_3:+18418139 None:intergenic
TAGAGAGATGGTTCACATGG+TGG 0.604125 8_3:+18418439 None:intergenic
TTGCATACCAAGCCGCGTCA+CGG 0.608939 8_3:+18418260 None:intergenic
TGTATGAAGTCATAAGTTCG+TGG 0.612720 8_3:+18413110 None:intergenic
GTGGCGGTGAAGTCGAGTGA+TGG 0.613488 8_3:+18418511 None:intergenic
CTGTTTGACCCCACTGCCAG+AGG 0.613886 8_3:-18414090 Msa1280310:CDS
TGCCCTAGCAAATAGAAGCA+AGG 0.620430 8_3:+18413710 None:intergenic
GGTGTGTATTCATAGAGAGA+TGG 0.621253 8_3:+18418427 None:intergenic
GCAGAAACACTGGAAAGGAT+GGG 0.622662 8_3:-18414820 Msa1280310:CDS
AATGTACCATACTGTCCCCA+AGG 0.624070 8_3:+18415875 None:intergenic
GTATGAAGTCATAAGTTCGT+GGG 0.624591 8_3:+18413111 None:intergenic
CATCGCAGATGAAATGCAGT+GGG 0.625105 8_3:-18412701 Msa1280310:CDS
GTTCAATTTGCTCTTGAACG+AGG 0.626971 8_3:-18415989 Msa1280310:CDS
GAAACATGGTCCCACCACCC+GGG 0.628660 8_3:+18418161 None:intergenic
TCAAGGTGCCTCATTCCTTG+GGG 0.628784 8_3:-18415890 Msa1280310:CDS
GTCGAGTGATGGAGTTGTGG+TGG 0.630098 8_3:+18418522 None:intergenic
GACAGAATCCAGTATCCACC+AGG 0.632745 8_3:+18414861 None:intergenic
GCATCGCAGATGAAATGCAG+TGG 0.633794 8_3:-18412702 Msa1280310:CDS
TAGAAAGAAACTTATCTACC+GGG 0.634061 8_3:-18418371 Msa1280310:CDS
AACTGGCAGAAACACTGGAA+AGG 0.634858 8_3:-18414825 Msa1280310:CDS
AACACTGGAAAGGATGGGAA+AGG 0.634984 8_3:-18414815 Msa1280310:CDS
TCATAGAGAGATGGTTCACA+TGG 0.639292 8_3:+18418436 None:intergenic
TTGTTGGTGGTGGGTCAGGG+AGG 0.640371 8_3:+18418482 None:intergenic
GTGGCCGGAGAGCCGTGACG+CGG 0.641029 8_3:-18418272 Msa1280310:CDS
CTTGGTGTCATATATGAACG+TGG 0.642336 8_3:-18413762 Msa1280310:CDS
AACGTTAAAGAAGTTGCTGG+TGG 0.643297 8_3:-18414062 Msa1280310:CDS
ACGGAGCTGGTATTCTACAC+CGG 0.646040 8_3:+18418317 None:intergenic
CTATGAATACACACCATGTG+AGG 0.647297 8_3:-18418419 Msa1280310:CDS
GGTGGTGGTGGAGTAACCGG+TGG 0.649812 8_3:+18418615 None:intergenic
AACCGGTTCAGGTTCCCGGG+TGG 0.660844 8_3:-18418175 Msa1280310:CDS
ACTTTCACTACTAATCCTTG+GGG 0.661937 8_3:+18414001 None:intergenic
TGAGCAGTGAGCCATATCAA+AGG 0.666508 8_3:+18415910 None:intergenic
GAGATGGTTCACATGGTGGG+AGG 0.670300 8_3:+18418443 None:intergenic
TGAAGATTAGGTGTAAGTGG+TGG 0.681621 8_3:+18418880 None:intergenic
CTTTCACTACTAATCCTTGG+GGG 0.685892 8_3:+18414002 None:intergenic
GTTATGGTGGAAGCATATGG+AGG 0.688651 8_3:+18418564 None:intergenic
GAGACACTGTCCCTTACCGG+AGG 0.691198 8_3:-18418347 Msa1280310:CDS
GATAGACTACTGCGTCCTGG+TGG 0.694036 8_3:-18414876 Msa1280310:CDS
TCCACATAAGGAGTTAACAG+TGG 0.696628 8_3:-18418233 Msa1280310:CDS
GTTGTTTACCTCTGGCAGTG+GGG 0.703697 8_3:+18414082 None:intergenic
ACCGGTGGCGGAGATGACGG+TGG 0.706903 8_3:+18418630 None:intergenic
GAAGTCGAGTGATGGAGTTG+TGG 0.711625 8_3:+18418519 None:intergenic
CTGGTGGAGAAATATCAAAG+TGG 0.719175 8_3:-18414046 Msa1280310:CDS
GTTACCGGTTACCATTACGG+TGG 0.720599 8_3:-18418291 Msa1280310:CDS
CCCACAACCAGTATCAATAG+CGG 0.733656 8_3:+18418069 None:intergenic
CAATGTAGATGTGTTGACGA+AGG 0.740038 8_3:-18412731 Msa1280310:CDS
GGTGGGACCATGTTTCCACG+TGG 0.744968 8_3:-18418154 Msa1280310:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATTATAATATATTATTA+TGG + chr8_3:18414234-18414253 None:intergenic 0.0%
!!! TAATAAAAATTTAGCTTTAA+TGG - chr8_3:18413900-18413919 Msa1280310:CDS 10.0%
!! AATAAATAAAAAAACAAGTT+TGG + chr8_3:18414135-18414154 None:intergenic 10.0%
!!! TAATCATATTTAATTTTAAC+TGG + chr8_3:18415698-18415717 None:intergenic 10.0%
!!! TAATTTATTTTCTCAAATTA+TGG - chr8_3:18416201-18416220 Msa1280310:intron 10.0%
!!! AATTTATTTTCTCAAATTAT+GGG - chr8_3:18416202-18416221 Msa1280310:intron 10.0%
!!! TAATAATATGTTTGGTTTTT+TGG + chr8_3:18412522-18412541 None:intergenic 15.0%
!!! ATTAAATATTTTTACCTATG+AGG - chr8_3:18413468-18413487 Msa1280310:intron 15.0%
!! AATAAAAATTTAAGTCAGTT+AGG + chr8_3:18413560-18413579 None:intergenic 15.0%
!! TTAAAATGTATATACATAGT+TGG + chr8_3:18413871-18413890 None:intergenic 15.0%
!! AATACATAAATAGCTAAAAA+GGG + chr8_3:18414297-18414316 None:intergenic 15.0%
!! TAATACATAAATAGCTAAAA+AGG + chr8_3:18414298-18414317 None:intergenic 15.0%
!! TATTCAATGTATATAAAAAG+TGG - chr8_3:18414829-18414848 Msa1280310:CDS 15.0%
!! TAATTACACTAAATTATTTG+TGG + chr8_3:18415470-18415489 None:intergenic 15.0%
!! ATTTAGTGTAATTATATGTT+CGG - chr8_3:18415476-18415495 Msa1280310:intron 15.0%
!!! GATATAATAAACATGATTTT+AGG + chr8_3:18415665-18415684 None:intergenic 15.0%
!!! TTTATTGTTTTTTTTGTAAC+AGG + chr8_3:18415910-18415929 None:intergenic 15.0%
!!! AAAATATAAAAGTAGCTTTT+AGG - chr8_3:18417816-18417835 Msa1280310:intron 15.0%
!!! AAAAGTTTTAATAAACAACT+TGG + chr8_3:18417869-18417888 None:intergenic 15.0%
!!! TTAAAACTTTTTAAATAGTC+TGG - chr8_3:18417878-18417897 Msa1280310:intron 15.0%
!! AAATTGAAAAGTGAAATTTA+AGG - chr8_3:18418035-18418054 Msa1280310:intron 15.0%
!! TCATATTATACTATAAAAGT+AGG + chr8_3:18418247-18418266 None:intergenic 15.0%
!!! AGATTGGTTAATAATATGTT+TGG + chr8_3:18412530-18412549 None:intergenic 20.0%
!! AAAGGTGATAAAATATAGAT+TGG + chr8_3:18412546-18412565 None:intergenic 20.0%
!!! AAGTTGATAAATCTTAAAGA+TGG - chr8_3:18413151-18413170 Msa1280310:intron 20.0%
!!! AGTTGATAAATCTTAAAGAT+GGG - chr8_3:18413152-18413171 Msa1280310:intron 20.0%
!! AAATATTTAATTGAACCAAC+CGG + chr8_3:18413459-18413478 None:intergenic 20.0%
!!! TTTTTGTTTTTATCTCTTTC+TGG - chr8_3:18413924-18413943 Msa1280310:CDS 20.0%
!! AAAAAAAAATCCAATCTTTG+AGG + chr8_3:18414061-18414080 None:intergenic 20.0%
!! ATACATAAATAGCTAAAAAG+GGG + chr8_3:18414296-18414315 None:intergenic 20.0%
!! AAAGAAAAAAAGTCTTAGAT+AGG - chr8_3:18414430-18414449 Msa1280310:intron 20.0%
!! AAGAAAAAAAGTCTTAGATA+GGG - chr8_3:18414431-18414450 Msa1280310:intron 20.0%
!! TAAAAATAAAGGGTCAAAAT+TGG - chr8_3:18414586-18414605 Msa1280310:intron 20.0%
!!! ACACATTTTAACTTTAAATG+TGG + chr8_3:18414698-18414717 None:intergenic 20.0%
!! TATTCAATGTATCTAAAAAG+TGG + chr8_3:18414768-18414787 None:intergenic 20.0%
!! ATGTATCTAGTCTATAATAA+AGG + chr8_3:18414805-18414824 None:intergenic 20.0%
!!! TTTAATATTTTTGGTTGGAT+TGG + chr8_3:18415070-18415089 None:intergenic 20.0%
!!! TGGATTTTAATATTTTTGGT+TGG + chr8_3:18415075-18415094 None:intergenic 20.0%
!!! GGTTTGGATTTTAATATTTT+TGG + chr8_3:18415079-18415098 None:intergenic 20.0%
!! AATGAGAAACATTAATGTAT+TGG + chr8_3:18415100-18415119 None:intergenic 20.0%
!! TCGTAATTTATTACAATATC+AGG - chr8_3:18415162-18415181 Msa1280310:intron 20.0%
!! TAATTTATTACAATATCAGG+TGG - chr8_3:18415165-18415184 Msa1280310:intron 20.0%
!! ATAAACACATTCAATGATTA+AGG - chr8_3:18415605-18415624 Msa1280310:intron 20.0%
!! TAAACACATTCAATGATTAA+GGG - chr8_3:18415606-18415625 Msa1280310:intron 20.0%
!!! CTTTGAAGATAAAAATAATG+TGG - chr8_3:18415802-18415821 Msa1280310:intron 20.0%
!! TAAAAATAATGTGGTTGAAA+AGG - chr8_3:18415811-18415830 Msa1280310:intron 20.0%
!! TGGAAAAAATTAGTACAAAA+AGG - chr8_3:18416522-18416541 Msa1280310:intron 20.0%
!! AGCTAAAATTTCTATGTATT+AGG + chr8_3:18416715-18416734 None:intergenic 20.0%
!! TCGAAATAAAGCAAATTAAT+AGG + chr8_3:18416754-18416773 None:intergenic 20.0%
!!! ATTTGCTTTATTTCGATTTT+CGG - chr8_3:18416758-18416777 Msa1280310:intron 20.0%
!!! CAGATGAAATAATTTTTGAT+CGG + chr8_3:18417667-18417686 None:intergenic 20.0%
!! GATCAAAAATTATTTCATCT+GGG - chr8_3:18417666-18417685 Msa1280310:intron 20.0%
!! TCATACTGAAAAACTAATTA+GGG + chr8_3:18417845-18417864 None:intergenic 20.0%
!! ATCATACTGAAAAACTAATT+AGG + chr8_3:18417846-18417865 None:intergenic 20.0%
!!! CAAACACTAATTTTTGATTT+TGG - chr8_3:18418737-18418756 Msa1280310:CDS 20.0%
!!! TAAGAGAAATTTTGTTCATA+TGG - chr8_3:18418766-18418785 Msa1280310:CDS 20.0%
!! TAATAATCTTCAAGATGTAA+AGG + chr8_3:18418794-18418813 None:intergenic 20.0%
! TTTCTTGTTCTTGTAGTTTA+AGG + chr8_3:18412440-18412459 None:intergenic 25.0%
!! CTAATTCAATCATTGAGTTT+TGG + chr8_3:18414088-18414107 None:intergenic 25.0%
!!! TTTGTGAACTTTTTTATCGT+AGG - chr8_3:18414194-18414213 Msa1280310:intron 25.0%
! TACATAAATAGCTAAAAAGG+GGG + chr8_3:18414295-18414314 None:intergenic 25.0%
! AAAGACATATTCCCAATATA+TGG - chr8_3:18414391-18414410 Msa1280310:intron 25.0%
! ATATTCCCAATATATGGTAA+AGG - chr8_3:18414397-18414416 Msa1280310:intron 25.0%
! AGTTTCCTTTACCATATATT+GGG + chr8_3:18414405-18414424 None:intergenic 25.0%
! AAGTTTCCTTTACCATATAT+TGG + chr8_3:18414406-18414425 None:intergenic 25.0%
! AGAAAAAAAGTCTTAGATAG+GGG - chr8_3:18414432-18414451 Msa1280310:intron 25.0%
! TGAAATGATATCTCATCTTA+AGG + chr8_3:18414546-18414565 None:intergenic 25.0%
!! TCAAAATTGGACATTTTTGT+GGG - chr8_3:18414599-18414618 Msa1280310:intron 25.0%
! GTATATTGCATATTATATGC+AGG - chr8_3:18414638-18414657 Msa1280310:CDS 25.0%
! AACTTTAAATGTGGAGAAAT+GGG + chr8_3:18414689-18414708 None:intergenic 25.0%
! TAACTTTAAATGTGGAGAAA+TGG + chr8_3:18414690-18414709 None:intergenic 25.0%
!! ATTTTGCTTATAATAGTGAC+CGG + chr8_3:18414744-18414763 None:intergenic 25.0%
! ATGTTAATAGATCCAATGTA+GGG + chr8_3:18414958-18414977 None:intergenic 25.0%
!!! GAAACATTAATGTATTGGTT+TGG + chr8_3:18415095-18415114 None:intergenic 25.0%
! TTAATGTTTCTCATTCATAG+AGG - chr8_3:18415105-18415124 Msa1280310:intron 25.0%
! ATGAAGCACATTTATGAAAA+CGG - chr8_3:18415417-18415436 Msa1280310:intron 25.0%
! GTGTGATAAAATAGTAAAAC+AGG + chr8_3:18415634-18415653 None:intergenic 25.0%
! TTCAATACGCACTTTATTAT+TGG - chr8_3:18415977-18415996 Msa1280310:CDS 25.0%
!! ATTATTGGTTGAAATTCATG+TGG - chr8_3:18415992-18416011 Msa1280310:CDS 25.0%
! TTTACTCTACAACATGAAAT+TGG - chr8_3:18416165-18416184 Msa1280310:intron 25.0%
! ATGTATTAGGTACTTCATAT+AGG + chr8_3:18416702-18416721 None:intergenic 25.0%
! AAAGTTAAAACCAACTTGTA+AGG + chr8_3:18416848-18416867 None:intergenic 25.0%
! TGAGTCTAACCAAAATTTAT+TGG - chr8_3:18416902-18416921 Msa1280310:intron 25.0%
!! ATCCAACATTTTATTCGATA+TGG - chr8_3:18416996-18417015 Msa1280310:intron 25.0%
! ATTAGTAGTGAAAGTTTGAA+TGG - chr8_3:18417261-18417280 Msa1280310:intron 25.0%
! TCAAAGAAAATACTGAGTTA+TGG - chr8_3:18417301-18417320 Msa1280310:intron 25.0%
! CTTGATATGAATTCTTACTT+AGG - chr8_3:18417393-18417412 Msa1280310:intron 25.0%
!!! TCGGACTTTATATACTTTTT+CGG + chr8_3:18417648-18417667 None:intergenic 25.0%
! CGATCAAAAATTATTTCATC+TGG - chr8_3:18417665-18417684 Msa1280310:intron 25.0%
!! AGAATCTGAAACAATAGTAA+AGG + chr8_3:18417991-18418010 None:intergenic 25.0%
! TAGGAATCAATTTGATGTAT+TGG - chr8_3:18418207-18418226 Msa1280310:CDS 25.0%
!!! TATGATAGAAGCATTTGTAT+AGG - chr8_3:18418318-18418337 Msa1280310:CDS 25.0%
!! AGTATCTTTTCACTTTGATA+AGG + chr8_3:18418608-18418627 None:intergenic 25.0%
! GTTTATGACAAAACTTTCAT+AGG - chr8_3:18418701-18418720 Msa1280310:CDS 25.0%
! ATGAGTTGAGTTTGAAGATT+AGG + chr8_3:18412389-18412408 None:intergenic 30.0%
GGTACATAAGAAAAATGCAA+AGG + chr8_3:18412564-18412583 None:intergenic 30.0%
! TGATGGTACTATTGTTGTTA+TGG + chr8_3:18412709-18412728 None:intergenic 30.0%
GGTAGATAAGTTTCTTTCTA+GGG + chr8_3:18412883-18412902 None:intergenic 30.0%
CTAGAAAGAAACTTATCTAC+CGG - chr8_3:18412882-18412901 Msa1280310:intron 30.0%
TAGAAAGAAACTTATCTACC+GGG - chr8_3:18412883-18412902 Msa1280310:intron 30.0%
!! AATGCATACGTTGATGATAT+TGG - chr8_3:18413127-18413146 Msa1280310:CDS 30.0%
!! ATGCATACGTTGATGATATT+GGG - chr8_3:18413128-18413147 Msa1280310:CDS 30.0%
AAACGGTTCAAGAAGAATTT+AGG + chr8_3:18413219-18413238 None:intergenic 30.0%
AATAAACCCAGCAGAAAAAA+CGG + chr8_3:18413236-18413255 None:intergenic 30.0%
! ATTTTTGTGGTTGTAGAAAC+TGG - chr8_3:18413253-18413272 Msa1280310:intron 30.0%
! AGAAACTGGTTTAATTGAAC+CGG - chr8_3:18413267-18413286 Msa1280310:intron 30.0%
! TCTCTTCTCTTCTATTTCTT+TGG - chr8_3:18413379-18413398 Msa1280310:intron 30.0%
GAAAATTGTCATAACCTCAT+AGG + chr8_3:18413485-18413504 None:intergenic 30.0%
!! TATGTAAAAAGTGCTTGAAC+TGG - chr8_3:18413813-18413832 Msa1280310:CDS 30.0%
! TTTATCTCTTTCTGGTAAGA+AGG - chr8_3:18413932-18413951 Msa1280310:CDS 30.0%
TTGATGTAATGTATCACTGT+TGG - chr8_3:18413991-18414010 Msa1280310:CDS 30.0%
ATGTCTTTCACAAGACATAA+GGG + chr8_3:18414379-18414398 None:intergenic 30.0%
TATGTCTTTCACAAGACATA+AGG + chr8_3:18414380-18414399 None:intergenic 30.0%
ATTACGTTTACCTTACTCTA+AGG + chr8_3:18414480-18414499 None:intergenic 30.0%
! GTCAAAATTGGACATTTTTG+TGG - chr8_3:18414598-18414617 Msa1280310:intron 30.0%
TATTGCATATTATATGCAGG+AGG - chr8_3:18414641-18414660 Msa1280310:CDS 30.0%
! ATTTTGCTTATAACAGTGAC+CGG - chr8_3:18414853-18414872 Msa1280310:CDS 30.0%
GATGTTAATAGATCCAATGT+AGG + chr8_3:18414959-18414978 None:intergenic 30.0%
TGAATTCGAGACATTACTTA+AGG + chr8_3:18415780-18415799 None:intergenic 30.0%
!! GTTGATGATTAATCTCAGTA+TGG + chr8_3:18415866-18415885 None:intergenic 30.0%
ACATTTCTATGTGGTATCAA+TGG + chr8_3:18416024-18416043 None:intergenic 30.0%
CTATGAGTTACATTTCTATG+TGG + chr8_3:18416033-18416052 None:intergenic 30.0%
! TGTGACACTAAATTTGTTTG+TGG - chr8_3:18416307-18416326 Msa1280310:intron 30.0%
!!! GTACTAATTTTTTCCAGCAT+AGG + chr8_3:18416518-18416537 None:intergenic 30.0%
AACTTTGCAATGCATATGAT+TGG + chr8_3:18416574-18416593 None:intergenic 30.0%
TATTATTACCAAGCCATATC+TGG + chr8_3:18416645-18416664 None:intergenic 30.0%
! TATTAGATTGCAGCTTTAGT+TGG - chr8_3:18416672-18416691 Msa1280310:intron 30.0%
GCAAATTAATAGGCAGAATT+TGG + chr8_3:18416744-18416763 None:intergenic 30.0%
TGTGAAATGTGTCTATAAGT+CGG - chr8_3:18416810-18416829 Msa1280310:intron 30.0%
! ATTTTCAACATTATCCCTCA+TGG + chr8_3:18416978-18416997 None:intergenic 30.0%
AGCCATATCGAATAAAATGT+TGG + chr8_3:18417001-18417020 None:intergenic 30.0%
AACTTTCACTACTAATCCTT+GGG + chr8_3:18417257-18417276 None:intergenic 30.0%
AAACTTTCACTACTAATCCT+TGG + chr8_3:18417258-18417277 None:intergenic 30.0%
GATATGAATTCTTACTTAGG+AGG - chr8_3:18417396-18417415 Msa1280310:intron 30.0%
TCATTGGAACCTATCAAAAT+TGG - chr8_3:18417517-18417536 Msa1280310:intron 30.0%
TTTCATAAAGCTGCTATTAG+TGG + chr8_3:18417909-18417928 None:intergenic 30.0%
TACTATTGTTTCAGATTCTG+TGG - chr8_3:18417992-18418011 Msa1280310:intron 30.0%
ACATCTGTGACACATTAATT+TGG + chr8_3:18418435-18418454 None:intergenic 30.0%
TGTCTTATGTCTCAATGATT+TGG - chr8_3:18418902-18418921 Msa1280310:intron 30.0%
GTCTTATGTCTCAATGATTT+GGG - chr8_3:18418903-18418922 Msa1280310:intron 30.0%
GTTTGAAGATTAGGTGTAAG+TGG + chr8_3:18412380-18412399 None:intergenic 35.0%
! GGATTTGAAAGTGTGAACTA+GGG + chr8_3:18412501-18412520 None:intergenic 35.0%
! TGGATTTGAAAGTGTGAACT+AGG + chr8_3:18412502-18412521 None:intergenic 35.0%
! TGTACCTTCTTTTACTTCCT+TGG - chr8_3:18412578-18412597 Msa1280310:three_prime_UTR 35.0%
! TGGTACTATTGTTGTTATGG+TGG + chr8_3:18412706-18412725 None:intergenic 35.0%
CGGTAGATAAGTTTCTTTCT+AGG + chr8_3:18412884-18412903 None:intergenic 35.0%
GTATGCAAATGTTCCACATA+AGG - chr8_3:18413009-18413028 Msa1280310:intron 35.0%
TGGAGAAGAAAAACCAGAAT+TGG - chr8_3:18413041-18413060 Msa1280310:intron 35.0%
GGAGAAGAAAAACCAGAATT+GGG - chr8_3:18413042-18413061 Msa1280310:intron 35.0%
!!! TTCTGCTGGGTTTATTTTTG+TGG - chr8_3:18413240-18413259 Msa1280310:intron 35.0%
! GAAACTGGTTTAATTGAACC+GGG - chr8_3:18413268-18413287 Msa1280310:intron 35.0%
AGAAGAGAAGAGAGAGAAAA+TGG + chr8_3:18413372-18413391 None:intergenic 35.0%
! GAAAATACTTGTGTGGACTA+GGG + chr8_3:18413430-18413449 None:intergenic 35.0%
GTTCAAGGAAAATACTTGTG+TGG + chr8_3:18413437-18413456 None:intergenic 35.0%
! CACAAGTATTTTCCTTGAAC+CGG - chr8_3:18413437-18413456 Msa1280310:intron 35.0%
TCACTCTGCACAAAATGTTT+GGG - chr8_3:18413516-18413535 Msa1280310:intron 35.0%
TTAAGTCAGTTAGGTCAACT+TGG + chr8_3:18413551-18413570 None:intergenic 35.0%
!!! AGCTTTTTTGCCTCAAAGAT+TGG - chr8_3:18414048-18414067 Msa1280310:CDS 35.0%
! TACCTTACTCTAAGGATAGT+GGG + chr8_3:18414472-18414491 None:intergenic 35.0%
! TTACCTTACTCTAAGGATAG+TGG + chr8_3:18414473-18414492 None:intergenic 35.0%
TCTAACCAATATACTCCTTC+CGG - chr8_3:18414722-18414741 Msa1280310:CDS 35.0%
!!! TTTTTAAGTAGTACTCCCTC+CGG + chr8_3:18414875-18414894 None:intergenic 35.0%
! CTTTTCTTTCGCGTATTCTT+GGG - chr8_3:18414903-18414922 Msa1280310:intron 35.0%
!! AGGATAAGGAAGTCTTATTG+AGG + chr8_3:18415317-18415336 None:intergenic 35.0%
TATTGAAGAGCTATGAAGCA+CGG + chr8_3:18415565-18415584 None:intergenic 35.0%
TATGACTCAACACTTTAGTG+TGG + chr8_3:18415840-18415859 None:intergenic 35.0%
TTTCTATGTGGTATCAATGG+CGG + chr8_3:18416021-18416040 None:intergenic 35.0%
GCGTAATTCACAATACTGAT+TGG - chr8_3:18416329-18416348 Msa1280310:intron 35.0%
AAAAAGGTGACCTTGCAATA+TGG - chr8_3:18416538-18416557 Msa1280310:intron 35.0%
TTGCAATGCATATGATTGGT+TGG + chr8_3:18416570-18416589 None:intergenic 35.0%
CACATTATTCAATCCAATGC+AGG + chr8_3:18416792-18416811 None:intergenic 35.0%
TAACTTGACTAACCTGATAG+CGG + chr8_3:18416933-18416952 None:intergenic 35.0%
ACATCTCTCATCTTGTTAGT+CGG - chr8_3:18417046-18417065 Msa1280310:intron 35.0%
!! ACATCAACCTTTTTCATTGC+AGG - chr8_3:18417124-18417143 Msa1280310:intron 35.0%
TTGTGTACCTGCAATGAAAA+AGG + chr8_3:18417134-18417153 None:intergenic 35.0%
TCTTTAACGTTGTTTACCTC+TGG + chr8_3:18417183-18417202 None:intergenic 35.0%
AACAACGTTAAAGAAGTTGC+TGG - chr8_3:18417189-18417208 Msa1280310:intron 35.0%
! GGAATTGAAGTTAGTCTCTT+TGG + chr8_3:18417234-18417253 None:intergenic 35.0%
ACTTTCACTACTAATCCTTG+GGG + chr8_3:18417256-18417275 None:intergenic 35.0%
GTATTAATTTCAGCCTCAAC+AGG + chr8_3:18417471-18417490 None:intergenic 35.0%
GAGGCTGAAATTAATACTCT+TGG - chr8_3:18417474-18417493 Msa1280310:intron 35.0%
ATATATGAACGTGGACTCAT+TGG - chr8_3:18417501-18417520 Msa1280310:intron 35.0%
!! CAAGGCATACCAATTTTGAT+AGG + chr8_3:18417529-18417548 None:intergenic 35.0%
AGTTTGTCCTAAAAATCGGA+GGG + chr8_3:18417602-18417621 None:intergenic 35.0%
TGCCAGTTTGTCCTAAAAAT+CGG + chr8_3:18417606-18417625 None:intergenic 35.0%
!! GGCACTGGTAATTTAGAATT+CGG - chr8_3:18417622-18417641 Msa1280310:intron 35.0%
! ATTTCATCTGGGATTCAAAC+TGG - chr8_3:18417677-18417696 Msa1280310:intron 35.0%
GAATTTCAGTGAGTGAATGT+CGG + chr8_3:18417719-18417738 None:intergenic 35.0%
TAGTGAATGACAAGCAACAT+TGG - chr8_3:18417783-18417802 Msa1280310:intron 35.0%
ATAAAGCTGCTATTAGTGGT+AGG + chr8_3:18417905-18417924 None:intergenic 35.0%
AAACATTTGTCCTAAGCATG+TGG - chr8_3:18418059-18418078 Msa1280310:intron 35.0%
! TTTTTACCTACCACATGCTT+AGG + chr8_3:18418072-18418091 None:intergenic 35.0%
! TACAACTTTTGTCTTGTCTC+AGG - chr8_3:18418100-18418119 Msa1280310:CDS 35.0%
GTATGAAGTCATAAGTTCGT+GGG + chr8_3:18418146-18418165 None:intergenic 35.0%
TGTATGAAGTCATAAGTTCG+TGG + chr8_3:18418147-18418166 None:intergenic 35.0%
CGAACTTATGACTTCATACA+TGG - chr8_3:18418147-18418166 Msa1280310:CDS 35.0%
ATTCCTATCATTACCTGTGT+TGG + chr8_3:18418194-18418213 None:intergenic 35.0%
GAAAACACGCGTAATATCTT+TGG - chr8_3:18418382-18418401 Msa1280310:CDS 35.0%
AATGTGTCACAGATGTAGTA+TGG - chr8_3:18418439-18418458 Msa1280310:CDS 35.0%
TAGTATGGAGAACATTCTTC+TGG - chr8_3:18418454-18418473 Msa1280310:CDS 35.0%
AGAATTAGAGACCATGAAGA+AGG - chr8_3:18418581-18418600 Msa1280310:CDS 35.0%
TTTGATAAGGTCCTTCTTCA+TGG + chr8_3:18418595-18418614 None:intergenic 35.0%
CATTGAGACATAAGACAACT+TGG + chr8_3:18418899-18418918 None:intergenic 35.0%
!! GCATTAGCCATTTTCAAACT+TGG - chr8_3:18418956-18418975 Msa1280310:intron 35.0%
TGAAGATTAGGTGTAAGTGG+TGG + chr8_3:18412377-18412396 None:intergenic 40.0%
GAGACCAAGGAAGTAAAAGA+AGG + chr8_3:18412585-18412604 None:intergenic 40.0%
! TCTTTTACTTCCTTGGTCTC+TGG - chr8_3:18412585-18412604 Msa1280310:exon 40.0%
! GTTGTTATGGTGGAAGCATA+TGG + chr8_3:18412696-18412715 None:intergenic 40.0%
TCATAGAGAGATGGTTCACA+TGG + chr8_3:18412821-18412840 None:intergenic 40.0%
GGTGTGTATTCATAGAGAGA+TGG + chr8_3:18412830-18412849 None:intergenic 40.0%
CTATGAATACACACCATGTG+AGG - chr8_3:18412835-18412854 Msa1280310:intron 40.0%
AATGGTAACCGGTAACCAAA+CGG + chr8_3:18412959-18412978 None:intergenic 40.0%
! TTGGTTACCGGTTACCATTA+CGG - chr8_3:18412960-18412979 Msa1280310:intron 40.0%
TCCACATAAGGAGTTAACAG+TGG - chr8_3:18413021-18413040 Msa1280310:intron 40.0%
TCCACTGTTAACTCCTTATG+TGG + chr8_3:18413025-18413044 None:intergenic 40.0%
AGAAAAACCAGAATTGGGTC+CGG - chr8_3:18413047-18413066 Msa1280310:intron 40.0%
ATCAGAACCGCTATTGATAC+TGG - chr8_3:18413178-18413197 Msa1280310:intron 40.0%
!!! TCTTGAACCGTTTTTTCTGC+TGG - chr8_3:18413226-18413245 Msa1280310:intron 40.0%
!!! CTTGAACCGTTTTTTCTGCT+GGG - chr8_3:18413227-18413246 Msa1280310:intron 40.0%
GGAAAATACTTGTGTGGACT+AGG + chr8_3:18413431-18413450 None:intergenic 40.0%
! AGTATTTTCCTTGAACCGGT+TGG - chr8_3:18413441-18413460 Msa1280310:intron 40.0%
! TAATTGAACCAACCGGTTCA+AGG + chr8_3:18413452-18413471 None:intergenic 40.0%
CTCACTCTGCACAAAATGTT+TGG - chr8_3:18413515-18413534 Msa1280310:intron 40.0%
AAAAGTCTTAGATAGGGGCA+TGG - chr8_3:18414437-18414456 Msa1280310:intron 40.0%
! AAAGTCTTAGATAGGGGCAT+GGG - chr8_3:18414438-18414457 Msa1280310:intron 40.0%
! ACCTTACTCTAAGGATAGTG+GGG + chr8_3:18414471-18414490 None:intergenic 40.0%
! TGTGGGTTAACTAAGTTCGT+AGG - chr8_3:18414616-18414635 Msa1280310:intron 40.0%
GCATATTATATGCAGGAGGT+CGG - chr8_3:18414645-18414664 Msa1280310:CDS 40.0%
CATATTATATGCAGGAGGTC+GGG - chr8_3:18414646-18414665 Msa1280310:CDS 40.0%
ATATTATATGCAGGAGGTCG+GGG - chr8_3:18414647-18414666 Msa1280310:CDS 40.0%
TGCTTATAATAGTGACCGGA+AGG + chr8_3:18414740-18414759 None:intergenic 40.0%
CCAAGAATACGCGAAAGAAA+AGG + chr8_3:18414905-18414924 None:intergenic 40.0%
! CCTTTTCTTTCGCGTATTCT+TGG - chr8_3:18414902-18414921 Msa1280310:CDS 40.0%
TGAATCTATGTGCCCTACAT+TGG - chr8_3:18414943-18414962 Msa1280310:intron 40.0%
ACTCGCATCCATTAACATCA+CGG - chr8_3:18414995-18415014 Msa1280310:intron 40.0%
TGTAGTTCCCGTGATGTTAA+TGG + chr8_3:18415006-18415025 None:intergenic 40.0%
GGATAAACACATCACATGCT+AGG + chr8_3:18415049-18415068 None:intergenic 40.0%
TACAATATCAGGTGGCAAGT+TGG - chr8_3:18415173-18415192 Msa1280310:intron 40.0%
ACAATATCAGGTGGCAAGTT+GGG - chr8_3:18415174-18415193 Msa1280310:intron 40.0%
TGAGCTTCATGAGTATCTCT+TGG + chr8_3:18415244-18415263 None:intergenic 40.0%
! GTTCAATTTGCTCTTGAACG+AGG - chr8_3:18415265-18415284 Msa1280310:intron 40.0%
GCAAGAATTCCAATCAATGC+AGG + chr8_3:18415295-18415314 None:intergenic 40.0%
TCAAAGGCTCTTGAAGGATA+AGG + chr8_3:18415331-18415350 None:intergenic 40.0%
TCCTTCAAGAGCCTTTGATA+TGG - chr8_3:18415333-18415352 Msa1280310:intron 40.0%
TTCTCAGATTAAGCGTGTTC+AGG + chr8_3:18415538-18415557 None:intergenic 40.0%
TGTAGAATGCGAGTGTACAT+TGG + chr8_3:18415934-18415953 None:intergenic 40.0%
TACACTACGAGAATGAGAAG+CGG + chr8_3:18416114-18416133 None:intergenic 40.0%
! TCACAATACTGATTGGCAGA+TGG - chr8_3:18416336-18416355 Msa1280310:intron 40.0%
! TGTTTCTGCCAGTTTATTGG+TGG + chr8_3:18416423-18416442 None:intergenic 40.0%
! CAGTGTTTCTGCCAGTTTAT+TGG + chr8_3:18416426-18416445 None:intergenic 40.0%
CAATAAACTGGCAGAAACAC+TGG - chr8_3:18416424-18416443 Msa1280310:intron 40.0%
ATGTAGCAAAAAGCCTATGC+TGG - chr8_3:18416502-18416521 Msa1280310:intron 40.0%
TTGGTTTCTGCCATATTGCA+AGG + chr8_3:18416551-18416570 None:intergenic 40.0%
ACATCTCTCACCTTACAAGT+TGG - chr8_3:18416835-18416854 Msa1280310:intron 40.0%
! GCGGATGGTCCAATAAATTT+TGG + chr8_3:18416914-18416933 None:intergenic 40.0%
CAAGTTACATTCCAGATGTC+TGG - chr8_3:18416946-18416965 Msa1280310:intron 40.0%
!! CGGTTTTGTATGATCGAGTT+AGG - chr8_3:18417066-18417085 Msa1280310:intron 40.0%
AACGTTAAAGAAGTTGCTGG+TGG - chr8_3:18417192-18417211 Msa1280310:intron 40.0%
CTGGTGGAGAAATATCAAAG+TGG - chr8_3:18417208-18417227 Msa1280310:intron 40.0%
CTTTCACTACTAATCCTTGG+GGG + chr8_3:18417255-18417274 None:intergenic 40.0%
!! ACTGGTTGATGATCCTGTTT+GGG - chr8_3:18417431-18417450 Msa1280310:intron 40.0%
ACAATGTTCATGACCCAAAC+AGG + chr8_3:18417447-18417466 None:intergenic 40.0%
CATGAACATTGTTCCTGTTG+AGG - chr8_3:18417455-18417474 Msa1280310:intron 40.0%
!! CTTGGTGTCATATATGAACG+TGG - chr8_3:18417492-18417511 Msa1280310:intron 40.0%
ATGCCTTGCTTCTATTTGCT+AGG - chr8_3:18417541-18417560 Msa1280310:intron 40.0%
! TGCCTTGCTTCTATTTGCTA+GGG - chr8_3:18417542-18417561 Msa1280310:intron 40.0%
! GTCTTAACCCTCCGATTTTT+AGG - chr8_3:18417592-18417611 Msa1280310:intron 40.0%
CAGTTTGTCCTAAAAATCGG+AGG + chr8_3:18417603-18417622 None:intergenic 40.0%
!!! CTCCGATTTTTAGGACAAAC+TGG - chr8_3:18417601-18417620 Msa1280310:intron 40.0%
!!! TTTTTAGGACAAACTGGCAC+TGG - chr8_3:18417607-18417626 Msa1280310:intron 40.0%
ATTTGTCCTAAGCATGTGGT+AGG - chr8_3:18418063-18418082 Msa1280310:intron 40.0%
! ATCATTACCTGTGTTGGTAG+AGG + chr8_3:18418188-18418207 None:intergenic 40.0%
CTACCAACACAGGTAATGAT+AGG - chr8_3:18418188-18418207 Msa1280310:CDS 40.0%
! CGCAAAATTACACCACCTTT+TGG + chr8_3:18418500-18418519 None:intergenic 40.0%
! CAATGTAGATGTGTTGACGA+AGG - chr8_3:18418523-18418542 Msa1280310:CDS 40.0%
TTGTAGCAGTCAAGCAATAC+TGG - chr8_3:18418627-18418646 Msa1280310:CDS 40.0%
!!! TGTTAGTTTTGCTCTGTTGG+TGG + chr8_3:18418659-18418678 None:intergenic 40.0%
!!! CTGTGTTAGTTTTGCTCTGT+TGG + chr8_3:18418662-18418681 None:intergenic 40.0%
CTGCGAACCAAGTTTGAAAA+TGG + chr8_3:18418966-18418985 None:intergenic 40.0%
!! CATTTTCAAACTTGGTTCGC+AGG - chr8_3:18418964-18418983 Msa1280310:five_prime_UTR 40.0%
! GTTATGGTGGAAGCATATGG+AGG + chr8_3:18412693-18412712 None:intergenic 45.0%
AGAGAGATGGTTCACATGGT+GGG + chr8_3:18412817-18412836 None:intergenic 45.0%
TAGAGAGATGGTTCACATGG+TGG + chr8_3:18412818-18412837 None:intergenic 45.0%
CACCATGTGAGGATCAGAAA+AGG - chr8_3:18412846-18412865 Msa1280310:intron 45.0%
! GACCTTTTCTGATCCTCACA+TGG + chr8_3:18412851-18412870 None:intergenic 45.0%
TGTAGAATACCAGCTCCGTT+TGG - chr8_3:18412941-18412960 Msa1280310:intron 45.0%
AGAATTGGGTCCGGTTCAAT+GGG - chr8_3:18413056-18413075 Msa1280310:intron 45.0%
! ACCGCTATTGATACTGGTTG+TGG - chr8_3:18413184-18413203 Msa1280310:intron 45.0%
CCCACAACCAGTATCAATAG+CGG + chr8_3:18413188-18413207 None:intergenic 45.0%
! CCGCTATTGATACTGGTTGT+GGG - chr8_3:18413185-18413204 Msa1280310:intron 45.0%
! CGCTATTGATACTGGTTGTG+GGG - chr8_3:18413186-18413205 Msa1280310:intron 45.0%
TGTGACCAAACCCAATTGTG+TGG + chr8_3:18413317-18413336 None:intergenic 45.0%
CTTTGGTTGTGACCACACAA+TGG - chr8_3:18413396-18413415 Msa1280310:intron 45.0%
TGTGACCACACAATGGAGTT+TGG - chr8_3:18413403-18413422 Msa1280310:intron 45.0%
! AAGTCTTAGATAGGGGCATG+GGG - chr8_3:18414439-18414458 Msa1280310:intron 45.0%
! AGTGACCGGAAGGAGTATAT+TGG + chr8_3:18414730-18414749 None:intergenic 45.0%
TTGCTTATAACAGTGACCGG+AGG - chr8_3:18414856-18414875 Msa1280310:CDS 45.0%
TGCTTATAACAGTGACCGGA+GGG - chr8_3:18414857-18414876 Msa1280310:CDS 45.0%
CTCGCATCCATTAACATCAC+GGG - chr8_3:18414996-18415015 Msa1280310:intron 45.0%
AGGTACAAATTCTCGTGCCT+AGG + chr8_3:18415029-18415048 None:intergenic 45.0%
CAATATCAGGTGGCAAGTTG+GGG - chr8_3:18415175-18415194 Msa1280310:intron 45.0%
GCCATATCAAAGGCTCTTGA+AGG + chr8_3:18415337-18415356 None:intergenic 45.0%
TGAGCAGTGAGCCATATCAA+AGG + chr8_3:18415347-18415366 None:intergenic 45.0%
TTGATATGGCTCACTGCTCA+AGG - chr8_3:18415347-18415366 Msa1280310:intron 45.0%
AATGTACCATACTGTCCCCA+AGG + chr8_3:18415382-18415401 None:intergenic 45.0%
GACATGTGTCGTGTTCGATA+TGG + chr8_3:18415510-18415529 None:intergenic 45.0%
GATTAAGCGTGTTCAGGTGT+CGG + chr8_3:18415532-18415551 None:intergenic 45.0%
TCCAGAGTCTGTGTTTGTCT+CGG - chr8_3:18416246-18416265 Msa1280310:intron 45.0%
GTGGATACTGGATTCTGTCA+GGG - chr8_3:18416397-18416416 Msa1280310:intron 45.0%
AACTGGCAGAAACACTGGAA+AGG - chr8_3:18416429-18416448 Msa1280310:intron 45.0%
GCAGAAACACTGGAAAGGAT+GGG - chr8_3:18416434-18416453 Msa1280310:intron 45.0%
AACACTGGAAAGGATGGGAA+AGG - chr8_3:18416439-18416458 Msa1280310:intron 45.0%
GAAAGGATGGGAAAGGACTA+AGG - chr8_3:18416446-18416465 Msa1280310:intron 45.0%
TCCTGTGCTTCTTCACAGAA+GGG + chr8_3:18416621-18416640 None:intergenic 45.0%
ATCCTGTGCTTCTTCACAGA+AGG + chr8_3:18416622-18416641 None:intergenic 45.0%
! AGAAGCACAGGATCCAGATA+TGG - chr8_3:18416629-18416648 Msa1280310:intron 45.0%
TTCGGTTAAGAGTCCTGCAT+TGG - chr8_3:18416776-18416795 Msa1280310:intron 45.0%
TTATTGGACCATCCGCTATC+AGG - chr8_3:18416918-18416937 Msa1280310:intron 45.0%
!! TTGACTAACCTGATAGCGGA+TGG + chr8_3:18416929-18416948 None:intergenic 45.0%
!! ATGTCTGGTCTTAGCCATGA+GGG - chr8_3:18416961-18416980 Msa1280310:intron 45.0%
GACTAACTTCAATTCCCCCA+AGG - chr8_3:18417238-18417257 Msa1280310:intron 45.0%
CTCTGCTAGCTGAGAATCAA+GGG + chr8_3:18417352-18417371 None:intergenic 45.0%
ACTCTGCTAGCTGAGAATCA+AGG + chr8_3:18417353-18417372 None:intergenic 45.0%
GATTCTCAGCTAGCAGAGTT+AGG - chr8_3:18417354-18417373 Msa1280310:intron 45.0%
!! CACTGGTTGATGATCCTGTT+TGG - chr8_3:18417430-18417449 Msa1280310:intron 45.0%
TGCCCTAGCAAATAGAAGCA+AGG + chr8_3:18417547-18417566 None:intergenic 45.0%
GAGTGAATGTCGGATCAATC+AGG + chr8_3:18417709-18417728 None:intergenic 45.0%
GTCATAAGTTCGTGGGTAAG+TGG + chr8_3:18418139-18418158 None:intergenic 45.0%
! TTTTCAGCCTCTACCAACAC+AGG - chr8_3:18418178-18418197 Msa1280310:CDS 45.0%
! GGAGAACATTCTTCTGGAGA+TGG - chr8_3:18418460-18418479 Msa1280310:CDS 45.0%
! ACATTCTTCTGGAGATGGAC+AGG - chr8_3:18418465-18418484 Msa1280310:CDS 45.0%
! TGGAGATGGACAGGATTTTG+CGG - chr8_3:18418474-18418493 Msa1280310:CDS 45.0%
CATCGCAGATGAAATGCAGT+GGG - chr8_3:18418553-18418572 Msa1280310:CDS 45.0%
!! AAAATCATATAATAATATTA+TGG - chr8_3:18413601-18413620 Msa1280310:intron 5.0%
!! AAATCATATAATAATATTAT+GGG - chr8_3:18413602-18413621 Msa1280310:intron 5.0%
!!! TTTTAATTTTTTTTTTCAAA+CGG - chr8_3:18413842-18413861 Msa1280310:CDS 5.0%
!!! TTTTTAATTGATTTTTTTAA+GGG + chr8_3:18414572-18414591 None:intergenic 5.0%
!!! ATTTTTAATTGATTTTTTTA+AGG + chr8_3:18414573-18414592 None:intergenic 5.0%
!! AAAAAATCAATTAAAAATAA+AGG - chr8_3:18414575-18414594 Msa1280310:intron 5.0%
!! AAAAATCAATTAAAAATAAA+GGG - chr8_3:18414576-18414595 Msa1280310:intron 5.0%
GATAGTGATGCCAGAGACCA+AGG + chr8_3:18412598-18412617 None:intergenic 50.0%
! ATGGTGGAAGCATATGGAGG+AGG + chr8_3:18412690-18412709 None:intergenic 50.0%
! GAAGTCGAGTGATGGAGTTG+TGG + chr8_3:18412738-18412757 None:intergenic 50.0%
ACGGAGCTGGTATTCTACAC+CGG + chr8_3:18412940-18412959 None:intergenic 50.0%
TACCAGCTCCGTTTGGTTAC+CGG - chr8_3:18412948-18412967 Msa1280310:intron 50.0%
! GTTACCGGTTACCATTACGG+TGG - chr8_3:18412963-18412982 Msa1280310:intron 50.0%
CATTGAACCGGACCCAATTC+TGG + chr8_3:18413057-18413076 None:intergenic 50.0%
CAGAATTGGGTCCGGTTCAA+TGG - chr8_3:18413055-18413074 Msa1280310:intron 50.0%
! TGAACCGGTTCCCATTGAAC+CGG + chr8_3:18413069-18413088 None:intergenic 50.0%
ATTTGCGCCACGTGGAAACA+TGG + chr8_3:18413110-18413129 None:intergenic 50.0%
AACCGGGAGAAAGACTTGTG+TGG - chr8_3:18413284-18413303 Msa1280310:intron 50.0%
GTCCACACAAGTCTTTCTCC+CGG + chr8_3:18413289-18413308 None:intergenic 50.0%
GAGAAAGACTTGTGTGGACC+AGG - chr8_3:18413290-18413309 Msa1280310:intron 50.0%
TGGACCAGGACCACACAATT+GGG - chr8_3:18413304-18413323 Msa1280310:intron 50.0%
CAAACCCAATTGTGTGGTCC+TGG + chr8_3:18413311-18413330 None:intergenic 50.0%
CAGGACCACACAATTGGGTT+TGG - chr8_3:18413309-18413328 Msa1280310:intron 50.0%
AGGGACCAAACTCCATTGTG+TGG + chr8_3:18413411-18413430 None:intergenic 50.0%
GCCCCACTATCCTTAGAGTA+AGG - chr8_3:18414467-18414486 Msa1280310:intron 50.0%
ACATCACGGGAACTACACCT+AGG - chr8_3:18415009-18415028 Msa1280310:intron 50.0%
! CGAGGTGTTCCTGCATTGAT+TGG - chr8_3:18415283-18415302 Msa1280310:intron 50.0%
! CTCAAGGTGCCTCATTCCTT+GGG - chr8_3:18415363-18415382 Msa1280310:intron 50.0%
! TCAAGGTGCCTCATTCCTTG+GGG - chr8_3:18415364-18415383 Msa1280310:intron 50.0%
CATACTGTCCCCAAGGAATG+AGG + chr8_3:18415375-18415394 None:intergenic 50.0%
CTCATTCCTTGGGGACAGTA+TGG - chr8_3:18415373-18415392 Msa1280310:intron 50.0%
ACCGAGACAAACACAGACTC+TGG + chr8_3:18416250-18416269 None:intergenic 50.0%
! GTTGATAGACTACTGCGTCC+TGG - chr8_3:18416375-18416394 Msa1280310:intron 50.0%
GACAGAATCCAGTATCCACC+AGG + chr8_3:18416396-18416415 None:intergenic 50.0%
GGTGGATACTGGATTCTGTC+AGG - chr8_3:18416396-18416415 Msa1280310:intron 50.0%
TGTCAGGGCCACCAATAAAC+TGG - chr8_3:18416412-18416431 Msa1280310:intron 50.0%
GGCAGAAACACTGGAAAGGA+TGG - chr8_3:18416433-18416452 Msa1280310:intron 50.0%
! ACCCTTCTGTGAAGAAGCAC+AGG - chr8_3:18416617-18416636 Msa1280310:intron 50.0%
CACAGGATCCAGATATGGCT+TGG - chr8_3:18416634-18416653 Msa1280310:intron 50.0%
CATGGCTAAGACCAGACATC+TGG + chr8_3:18416960-18416979 None:intergenic 50.0%
!! GATGTCTGGTCTTAGCCATG+AGG - chr8_3:18416960-18416979 Msa1280310:intron 50.0%
GTTGTTTACCTCTGGCAGTG+GGG + chr8_3:18417175-18417194 None:intergenic 50.0%
CGTTGTTTACCTCTGGCAGT+GGG + chr8_3:18417176-18417195 None:intergenic 50.0%
ACGTTGTTTACCTCTGGCAG+TGG + chr8_3:18417177-18417196 None:intergenic 50.0%
AGTTCGTGGGTAAGTGGACA+TGG + chr8_3:18418133-18418152 None:intergenic 50.0%
! GACAGGATTTTGCGGCCAAA+AGG - chr8_3:18418482-18418501 Msa1280310:CDS 50.0%
! AGGATTTTGCGGCCAAAAGG+TGG - chr8_3:18418485-18418504 Msa1280310:CDS 50.0%
GCATCGCAGATGAAATGCAG+TGG - chr8_3:18418552-18418571 Msa1280310:CDS 50.0%
!! AGAGGTGGTGGTGGAGTAAC+CGG + chr8_3:18412645-18412664 None:intergenic 55.0%
GAAGCATATGGAGGAGGAGG+AGG + chr8_3:18412684-18412703 None:intergenic 55.0%
! GTGGAAGCATATGGAGGAGG+AGG + chr8_3:18412687-18412706 None:intergenic 55.0%
TGGAGTTGTGGTGGCTGTGA+TGG + chr8_3:18412726-18412745 None:intergenic 55.0%
! GTCGAGTGATGGAGTTGTGG+TGG + chr8_3:18412735-18412754 None:intergenic 55.0%
TGAGAAACACGCGCCGTTGT+TGG + chr8_3:18412791-18412810 None:intergenic 55.0%
! GAGATGGTTCACATGGTGGG+AGG + chr8_3:18412814-18412833 None:intergenic 55.0%
GTAAGGGACAGTGTCTCTCC+CGG + chr8_3:18412904-18412923 None:intergenic 55.0%
GGAGAGACACTGTCCCTTAC+CGG - chr8_3:18412904-18412923 Msa1280310:intron 55.0%
AACCGGTAACCAAACGGAGC+TGG + chr8_3:18412953-18412972 None:intergenic 55.0%
TTGCATACCAAGCCGCGTCA+CGG + chr8_3:18412997-18413016 None:intergenic 55.0%
! GGTTCAATGGGAACCGGTTC+AGG - chr8_3:18413068-18413087 Msa1280310:intron 55.0%
ACGTATGCATTTGCGCCACG+TGG + chr8_3:18413118-18413137 None:intergenic 55.0%
GTGGACCAGGACCACACAAT+TGG - chr8_3:18413303-18413322 Msa1280310:intron 55.0%
! GCTCAAGGTGCCTCATTCCT+TGG - chr8_3:18415362-18415381 Msa1280310:intron 55.0%
AACGGACACCTGACACGACA+CGG - chr8_3:18415435-18415454 Msa1280310:intron 55.0%
GATAGACTACTGCGTCCTGG+TGG - chr8_3:18416378-18416397 Msa1280310:intron 55.0%
! TACTGCGTCCTGGTGGATAC+TGG - chr8_3:18416385-18416404 Msa1280310:intron 55.0%
!! GTAACCGGTGGCGGAGATGA+CGG + chr8_3:18412630-18412649 None:intergenic 60.0%
TATGGAGGAGGAGGAGGAGG+AGG + chr8_3:18412678-18412697 None:intergenic 60.0%
GCATATGGAGGAGGAGGAGG+AGG + chr8_3:18412681-18412700 None:intergenic 60.0%
GTGGCGGTGAAGTCGAGTGA+TGG + chr8_3:18412746-18412765 None:intergenic 60.0%
!! TTGTTGGTGGTGGGTCAGGG+AGG + chr8_3:18412775-18412794 None:intergenic 60.0%
!! CCGTTGTTGGTGGTGGGTCA+GGG + chr8_3:18412778-18412797 None:intergenic 60.0%
CCCTGACCCACCACCAACAA+CGG - chr8_3:18412775-18412794 Msa1280310:CDS 60.0%
GAAACACGCGCCGTTGTTGG+TGG + chr8_3:18412788-18412807 None:intergenic 60.0%
GAGACACTGTCCCTTACCGG+AGG - chr8_3:18412907-18412926 Msa1280310:intron 60.0%
CGGAGAGTCTCCTCCGGTAA+GGG + chr8_3:18412920-18412939 None:intergenic 60.0%
CCTTACCGGAGGAGACTCTC+CGG - chr8_3:18412918-18412937 Msa1280310:intron 60.0%
CTACACCGGAGAGTCTCCTC+CGG + chr8_3:18412926-18412945 None:intergenic 60.0%
CCGGCCACCGTAATGGTAAC+CGG + chr8_3:18412970-18412989 None:intergenic 60.0%
CCGGTTACCATTACGGTGGC+CGG - chr8_3:18412967-18412986 Msa1280310:intron 60.0%
GGGTCCGGTTCAATGGGAAC+CGG - chr8_3:18413062-18413081 Msa1280310:intron 60.0%
! TGGGAACCGGTTCAGGTTCC+CGG - chr8_3:18413075-18413094 Msa1280310:intron 60.0%
GAAACATGGTCCCACCACCC+GGG + chr8_3:18413096-18413115 None:intergenic 60.0%
GGAAACATGGTCCCACCACC+CGG + chr8_3:18413097-18413116 None:intergenic 60.0%
GGTGGGACCATGTTTCCACG+TGG - chr8_3:18413100-18413119 Msa1280310:CDS 60.0%
GGAGGTCGGGGTTCGAATCT+CGG - chr8_3:18414659-18414678 Msa1280310:CDS 60.0%
GTCAGTGTCCGTGTCGTGTC+AGG + chr8_3:18415446-18415465 None:intergenic 60.0%
CTCTGGCAGTGGGGTCAAAC+AGG + chr8_3:18417166-18417185 None:intergenic 60.0%
CTGTTTGACCCCACTGCCAG+AGG - chr8_3:18417164-18417183 Msa1280310:intron 60.0%
AGGAGGCTTTGCAGCTGCAC+TGG - chr8_3:18417413-18417432 Msa1280310:intron 60.0%
!! GCGGAGATGACGGTGGTGGA+AGG + chr8_3:18412620-18412639 None:intergenic 65.0%
ACCACCGTCATCTCCGCCAC+CGG - chr8_3:18412623-18412642 Msa1280310:CDS 65.0%
!! GGTGGTGGAGTAACCGGTGG+CGG + chr8_3:18412639-18412658 None:intergenic 65.0%
!! GGTGGTGGTGGAGTAACCGG+TGG + chr8_3:18412642-18412661 None:intergenic 65.0%
! GGAGGGTTGAGAGGTGGTGG+TGG + chr8_3:18412654-18412673 None:intergenic 65.0%
GGAGGAGGGTTGAGAGGTGG+TGG + chr8_3:18412657-18412676 None:intergenic 65.0%
GGAGGAGGAGGGTTGAGAGG+TGG + chr8_3:18412660-18412679 None:intergenic 65.0%
GGAGGAGGAGGAGGGTTGAG+AGG + chr8_3:18412663-18412682 None:intergenic 65.0%
GAGGAGGAGGAGGAGGAGGA+GGG + chr8_3:18412671-18412690 None:intergenic 65.0%
GTCAGGGAGGTGGTGAGTGG+CGG + chr8_3:18412762-18412781 None:intergenic 65.0%
TGGGTCAGGGAGGTGGTGAG+TGG + chr8_3:18412765-18412784 None:intergenic 65.0%
!! TTGGTGGTGGGTCAGGGAGG+TGG + chr8_3:18412772-18412791 None:intergenic 65.0%
!! GCCGTTGTTGGTGGTGGGTC+AGG + chr8_3:18412779-18412798 None:intergenic 65.0%
!! CACGCGCCGTTGTTGGTGGT+GGG + chr8_3:18412784-18412803 None:intergenic 65.0%
! ACACGCGCCGTTGTTGGTGG+TGG + chr8_3:18412785-18412804 None:intergenic 65.0%
CCGGAGAGTCTCCTCCGGTA+AGG + chr8_3:18412921-18412940 None:intergenic 65.0%
! GGGAACCGGTTCAGGTTCCC+GGG - chr8_3:18413076-18413095 Msa1280310:intron 65.0%
! AACCGGTTCAGGTTCCCGGG+TGG - chr8_3:18413079-18413098 Msa1280310:CDS 65.0%
CACCACCCGGGAACCTGAAC+CGG + chr8_3:18413084-18413103 None:intergenic 65.0%
! GGTTCAGGTTCCCGGGTGGT+GGG - chr8_3:18413083-18413102 Msa1280310:CDS 65.0%
!! GGTGGCGGAGATGACGGTGG+TGG + chr8_3:18412624-18412643 None:intergenic 70.0%
!! ACCGGTGGCGGAGATGACGG+TGG + chr8_3:18412627-18412646 None:intergenic 70.0%
GGAGGAGGAGGAGGAGGAGG+AGG + chr8_3:18412669-18412688 None:intergenic 70.0%
GGAGGAGGAGGAGGAGGAGG+AGG + chr8_3:18412669-18412688 None:intergenic 70.0%
CGGCTCTCCGGCCACCGTAA+TGG + chr8_3:18412977-18412996 None:intergenic 70.0%
CAAGCCGCGTCACGGCTCTC+CGG + chr8_3:18412989-18413008 None:intergenic 70.0%
! CGGTTCAGGTTCCCGGGTGG+TGG - chr8_3:18413082-18413101 Msa1280310:CDS 70.0%
GTGGCCGGAGAGCCGTGACG+CGG - chr8_3:18412982-18413001 Msa1280310:intron 75.0%
CGGAGAGCCGTGACGCGGCT+TGG - chr8_3:18412987-18413006 Msa1280310:intron 75.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 18412274 18419002 18412274 ID=Msa1280310;Name=Msa1280310
chr8_3 mRNA 18412274 18419002 18412274 ID=Msa1280310-mRNA-1;Parent=Msa1280310;Name=Msa1280310-mRNA-1;_AED=0.14;_eAED=0.14;_QI=158|0.85|0.87|1|0.71|0.5|8|305|675
chr8_3 exon 18412274 18412441 18412274 ID=Msa1280310-mRNA-1:exon:7033;Parent=Msa1280310-mRNA-1
chr8_3 exon 18412463 18412825 18412463 ID=Msa1280310-mRNA-1:exon:7032;Parent=Msa1280310-mRNA-1
chr8_3 exon 18413077 18413154 18413077 ID=Msa1280310-mRNA-1:exon:7031;Parent=Msa1280310-mRNA-1
chr8_3 exon 18413648 18414130 18413648 ID=Msa1280310-mRNA-1:exon:7030;Parent=Msa1280310-mRNA-1
chr8_3 exon 18414621 18414921 18414621 ID=Msa1280310-mRNA-1:exon:7029;Parent=Msa1280310-mRNA-1
chr8_3 exon 18415882 18416092 18415882 ID=Msa1280310-mRNA-1:exon:7028;Parent=Msa1280310-mRNA-1
chr8_3 exon 18418069 18418914 18418069 ID=Msa1280310-mRNA-1:exon:7027;Parent=Msa1280310-mRNA-1
chr8_3 exon 18418962 18419002 18418962 ID=Msa1280310-mRNA-1:exon:7026;Parent=Msa1280310-mRNA-1
chr8_3 five_prime_UTR 18418962 18419002 18418962 ID=Msa1280310-mRNA-1:five_prime_utr;Parent=Msa1280310-mRNA-1
chr8_3 five_prime_UTR 18418798 18418914 18418798 ID=Msa1280310-mRNA-1:five_prime_utr;Parent=Msa1280310-mRNA-1
chr8_3 CDS 18418069 18418797 18418069 ID=Msa1280310-mRNA-1:cds;Parent=Msa1280310-mRNA-1
chr8_3 CDS 18415882 18416092 18415882 ID=Msa1280310-mRNA-1:cds;Parent=Msa1280310-mRNA-1
chr8_3 CDS 18414621 18414921 18414621 ID=Msa1280310-mRNA-1:cds;Parent=Msa1280310-mRNA-1
chr8_3 CDS 18413648 18414130 18413648 ID=Msa1280310-mRNA-1:cds;Parent=Msa1280310-mRNA-1
chr8_3 CDS 18413077 18413154 18413077 ID=Msa1280310-mRNA-1:cds;Parent=Msa1280310-mRNA-1
chr8_3 CDS 18412600 18412825 18412600 ID=Msa1280310-mRNA-1:cds;Parent=Msa1280310-mRNA-1
chr8_3 three_prime_UTR 18412463 18412599 18412463 ID=Msa1280310-mRNA-1:three_prime_utr;Parent=Msa1280310-mRNA-1
chr8_3 three_prime_UTR 18412274 18412441 18412274 ID=Msa1280310-mRNA-1:three_prime_utr;Parent=Msa1280310-mRNA-1
Gene Sequence

>Msa1280310

ATGAATATTAACTTCAAAACCCTAGTTCACACTTTCAAATCCAAAAAACCAAACATATTATTAACCAATCTATATTTTATCACCTTTGCATTTTTCTTATGTACCTTCTTTTACTTCCTTGGTCTCTGGCATCACTATCCTTCCACCACCGTCATCTCCGCCACCGGTTACTCCACCACCACCTCTCAACCCTCCTCCTCCTCCTCCTCCTCCTCCATATGCTTCCACCATAACAACAATAGTACCATCACAGCCACCACAACTCCATCACTCGACTTCACCGCCACTCACCACCTCCCTGACCCACCACCAACAACGGCGCGTGTTTCTCACCTCCCACCATGTGAACCATCTCTCTATGAATACACACCATGTGAGGATCAGAAAAGGTCACTACGCTTCCCTAGAAAGAAACTTATCTACCGGGAGAGACACTGTCCCTTACCGGAGGAGACTCTCCGGTGTAGAATACCAGCTCCGTTTGGTTACCGGTTACCATTACGGTGGCCGGAGAGCCGTGACGCGGCTTGGTATGCAAATGTTCCACATAAGGAGTTAACAGTGGAGAAGAAAAACCAGAATTGGGTCCGGTTCAATGGGAACCGGTTCAGGTTCCCGGGTGGTGGGACCATGTTTCCACGTGGCGCAAATGCATACGTTGATGATATTGGGAAGTTGATAAATCTTAAAGATGGGTCTATCAGAACCGCTATTGATACTGGTTGTGGGGTGGCAAGTTGGGGAGCTTATCTTTTGTCACGTAACATATTAACAGTGTCAATTGCACCAAGAGATACTCATGAAGCTCAAGTTCAATTTGCTCTTGAACGAGGTGTTCCTGCATTGATTGGAATTCTTGCCTCAATAAGACTTCCTTATCCTTCAAGAGCCTTTGATATGGCTCACTGCTCAAGGTGCCTCATTCCTTGGGGACAGTATGATGGAATATACTTGACTGAAGTTGATAGACTACTGCGTCCTGGTGGATACTGGATTCTGTCAGGGCCACCAATAAACTGGCAGAAACACTGGAAAGGATGGGAAAGGACTAAGGAGAGTCTCAATGATGAACAAGATGCAATTGAGAATGTAGCAAAAAGCCTATGCTGGAAAAAATTAGTACAAAAAGGTGACCTTGCAATATGGCAGAAACCAACCAATCATATGCATTGCAAAGTTAAAAGAAAGATTTTCAAGACTAGACCCTTCTGTGAAGAAGCACAGGATCCAGATATGGCTTGGTACACAAAACTAGATACCTGTTTGACCCCACTGCCAGAGGTAAACAACGTTAAAGAAGTTGCTGGTGGAGAAATATCAAAGTGGCCAAAGAGACTAACTTCAATTCCCCCAAGGATTAGTAGTGAAAGTTTGAATGGAATAACATCAGAAATGTTCAAAGAAAATACTGAGTTATGGAAAAAGAGAGTGTCATATTACAAGACCCTTGATTCTCAGCTAGCAGAGTTAGGAAGATATAGAAATCTTCTTGATATGAATTCTTACTTAGGAGGCTTTGCAGCTGCACTGGTTGATGATCCTGTTTGGGTCATGAACATTGTTCCTGTTGAGGCTGAAATTAATACTCTTGGTGTCATATATGAACGTGGACTCATTGGAACCTATCAAAATTGGTATGCCTTGCTTCTATTTGCTAGGGCAAAGTTGAGTGATTTGTTTACTTTTAGTCTTAACCCTCCGATTTTTAGGACAAACTGGCACTGGTGTGAAGCCATGTCCACTTACCCACGAACTTATGACTTCATACATGGTGATTCAGTTTTCAGCCTCTACCAACACAGATGTAGTATGGAGAACATTCTTCTGGAGATGGACAGGATTTTGCGGCCAAAAGGTGGTGTAATTTTGCGCGACAATGTAGATGTGTTGACGAAGGTGAAGAGCATCGCAGATGAAATGCAGTGGGATGCAAGAATTAGAGACCATGAAGAAGGACCTTATCAAAGTGAAAAGATACTTGTAGCAGTCAAGCAATACTGGACAGCTCCACCAACAGAGCAAAACTAA
Protein sequence

>Msa1280310

MNINFKTLVHTFKSKKPNILLTNLYFITFAFFLCTFFYFLGLWHHYPSTTVISATGYSTTTSQPSSSSSSSSICFHHNNNSTITATTTPSLDFTATHHLPDPPPTTARVSHLPPCEPSLYEYTPCEDQKRSLRFPRKKLIYRERHCPLPEETLRCRIPAPFGYRLPLRWPESRDAAWYANVPHKELTVEKKNQNWVRFNGNRFRFPGGGTMFPRGANAYVDDIGKLINLKDGSIRTAIDTGCGVASWGAYLLSRNILTVSIAPRDTHEAQVQFALERGVPALIGILASIRLPYPSRAFDMAHCSRCLIPWGQYDGIYLTEVDRLLRPGGYWILSGPPINWQKHWKGWERTKESLNDEQDAIENVAKSLCWKKLVQKGDLAIWQKPTNHMHCKVKRKIFKTRPFCEEAQDPDMAWYTKLDTCLTPLPEVNNVKEVAGGEISKWPKRLTSIPPRISSESLNGITSEMFKENTELWKKRVSYYKTLDSQLAELGRYRNLLDMNSYLGGFAAALVDDPVWVMNIVPVEAEINTLGVIYERGLIGTYQNWYALLLFARAKLSDLFTFSLNPPIFRTNWHWCEAMSTYPRTYDFIHGDSVFSLYQHRCSMENILLEMDRILRPKGGVILRDNVDVLTKVKSIADEMQWDARIRDHEEGPYQSEKILVAVKQYWTAPPTEQN*