Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1281750 | sp|Q9SE45|ANXD3_ARATH | 55.031 | 318 | 140 | 2 | 1 | 315 | 1 | 318 | 2.51e-123 | 359 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1281750 | G7LF82 | 95.625 | 320 | 14 | 0 | 1 | 320 | 1 | 320 | 0.0 | 633 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1281750 | Msa1321060 | 0.896095 | 5.125248e-76 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1281750 | MtrunA17_Chr8g0352571 | 95.625 | 320 | 14 | 0 | 1 | 320 | 1 | 320 | 0.0 | 633 |
| Msa1281750 | MtrunA17_Chr5g0425971 | 43.175 | 315 | 176 | 1 | 1 | 315 | 1 | 312 | 1.23e-81 | 250 |
| Msa1281750 | MtrunA17_Chr8g0382281 | 42.405 | 316 | 179 | 1 | 1 | 316 | 1 | 313 | 7.47e-78 | 240 |
| Msa1281750 | MtrunA17_Chr8g0352621 | 40.193 | 311 | 183 | 1 | 6 | 316 | 4 | 311 | 1.35e-76 | 237 |
| Msa1281750 | MtrunA17_Chr3g0083901 | 40.328 | 305 | 179 | 1 | 12 | 316 | 11 | 312 | 2.43e-75 | 234 |
| Msa1281750 | MtrunA17_Chr3g0083921 | 40.823 | 316 | 183 | 2 | 1 | 316 | 1 | 312 | 3.40e-75 | 233 |
| Msa1281750 | MtrunA17_Chr8g0393281 | 41.325 | 317 | 179 | 3 | 1 | 315 | 1 | 312 | 1.26e-74 | 232 |
| Msa1281750 | MtrunA17_Chr8g0352611 | 40.506 | 316 | 183 | 2 | 1 | 316 | 1 | 311 | 7.94e-74 | 230 |
| Msa1281750 | MtrunA17_Chr8g0352591 | 40.379 | 317 | 174 | 3 | 1 | 317 | 1 | 302 | 1.36e-71 | 224 |
| Msa1281750 | MtrunA17_Chr2g0293441 | 38.095 | 315 | 191 | 2 | 1 | 315 | 1 | 311 | 6.95e-66 | 209 |
| Msa1281750 | MtrunA17_Chr6g0479411 | 37.539 | 317 | 191 | 3 | 1 | 315 | 28 | 339 | 1.77e-64 | 207 |
| Msa1281750 | MtrunA17_Chr6g0479421 | 39.432 | 317 | 185 | 3 | 1 | 315 | 1 | 312 | 4.62e-64 | 205 |
| Msa1281750 | MtrunA17_Chr1g0162071 | 35.127 | 316 | 200 | 3 | 1 | 315 | 1 | 312 | 6.74e-64 | 204 |
| Msa1281750 | MtrunA17_Chr1g0210981 | 37.224 | 317 | 192 | 3 | 1 | 315 | 1 | 312 | 1.69e-61 | 198 |
| Msa1281750 | MtrunA17_Chr8g0352581 | 38.154 | 325 | 171 | 8 | 11 | 317 | 1 | 313 | 5.82e-60 | 194 |
| Msa1281750 | MtrunA17_Chr6g0479391 | 37.748 | 302 | 181 | 3 | 16 | 315 | 16 | 312 | 5.62e-58 | 189 |
| Msa1281750 | MtrunA17_Chr6g0461141 | 30.421 | 309 | 200 | 6 | 16 | 316 | 9 | 310 | 3.14e-35 | 130 |
| Msa1281750 | MtrunA17_Chr3g0084011 | 53.226 | 62 | 29 | 0 | 12 | 73 | 11 | 72 | 9.34e-16 | 72.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1281750 | AT2G38760.1 | 55.031 | 318 | 140 | 2 | 1 | 315 | 1 | 318 | 2.55e-124 | 359 |
| Msa1281750 | AT5G65020.1 | 44.025 | 318 | 174 | 2 | 1 | 317 | 1 | 315 | 3.41e-85 | 259 |
| Msa1281750 | AT5G10230.1 | 43.810 | 315 | 174 | 1 | 1 | 315 | 1 | 312 | 4.83e-84 | 256 |
| Msa1281750 | AT5G12380.1 | 43.218 | 317 | 176 | 2 | 1 | 317 | 1 | 313 | 3.16e-83 | 254 |
| Msa1281750 | AT5G10220.1 | 42.271 | 317 | 178 | 2 | 1 | 315 | 1 | 314 | 1.17e-80 | 248 |
| Msa1281750 | AT5G65020.2 | 43.345 | 293 | 162 | 2 | 26 | 317 | 11 | 300 | 3.35e-76 | 236 |
| Msa1281750 | AT1G35720.1 | 40.938 | 320 | 179 | 3 | 1 | 316 | 1 | 314 | 9.60e-76 | 235 |
| Msa1281750 | AT1G68090.1 | 34.177 | 316 | 204 | 2 | 1 | 315 | 1 | 313 | 2.86e-59 | 193 |
| Msa1281750 | AT2G38750.1 | 34.177 | 316 | 174 | 8 | 22 | 316 | 15 | 317 | 3.82e-44 | 154 |
| Msa1281750 | AT2G38750.2 | 34.295 | 312 | 171 | 8 | 26 | 316 | 2 | 300 | 4.51e-44 | 153 |
| Msa1281750 | AT1G68090.2 | 31.225 | 253 | 170 | 2 | 1 | 252 | 1 | 250 | 3.21e-39 | 139 |
Find 65 sgRNAs with CRISPR-Local
Find 189 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTATGCACCAACAGGTTATA+AGG | 0.231265 | 8_3:-21474302 | Msa1281750:intron |
| GATCAAACAGCTGCAGATTC+TGG | 0.323861 | 8_3:-21475823 | Msa1281750:CDS |
| TATTTGTAATCTTAATTTGC+TGG | 0.328649 | 8_3:-21474038 | Msa1281750:three_prime_UTR |
| CGCTCTTAAATGTGGTAGTA+TGG | 0.329332 | 8_3:-21474995 | Msa1281750:CDS |
| TAGATGATGATCACTTTGTT+TGG | 0.349916 | 8_3:-21475287 | Msa1281750:CDS |
| AAAGAGTTAATCTTGGTGTT+AGG | 0.350373 | 8_3:-21476777 | Msa1281750:CDS |
| GTGTGTGTGTTATTCTGAAT+TGG | 0.355855 | 8_3:-21473936 | Msa1281750:three_prime_UTR |
| ATGCAAGAGTTTCACGGATC+TGG | 0.369500 | 8_3:+21475241 | None:intergenic |
| GCATCCTACAAGCAACTCTA+TGG | 0.375541 | 8_3:-21475222 | Msa1281750:CDS |
| CTGACTGCCATCAAATGATT+TGG | 0.378505 | 8_3:+21475777 | None:intergenic |
| ACGGATCTGGAAAACATTCC+TGG | 0.388969 | 8_3:+21475254 | None:intergenic |
| GTTATAAGGGATTCTATTGT+CGG | 0.406879 | 8_3:-21474288 | Msa1281750:CDS |
| GTCGAGTCCAAATCATTTGA+TGG | 0.419857 | 8_3:-21475784 | Msa1281750:CDS |
| ATATATTGAAGTTATTATCA+TGG | 0.421522 | 8_3:-21473818 | Msa1281750:three_prime_UTR |
| TACCTTTGCGAAATGTTTCT+CGG | 0.422016 | 8_3:+21474959 | None:intergenic |
| AGACGTTCAGTGTCTGTGTT+AGG | 0.424878 | 8_3:+21477240 | None:intergenic |
| TATGCACCAACAGGTTATAA+GGG | 0.431985 | 8_3:-21474301 | Msa1281750:intron |
| ATTTGCAAGGGATGCATTGA+AGG | 0.432105 | 8_3:-21475859 | Msa1281750:CDS |
| ACCTTTGCGAAATGTTTCTC+GGG | 0.432951 | 8_3:+21474960 | None:intergenic |
| CGTCTTCAATCTGAGCTCTC+TGG | 0.448509 | 8_3:-21476681 | Msa1281750:CDS |
| CAAATCATTTGATGGCAGTC+AGG | 0.456470 | 8_3:-21475776 | Msa1281750:CDS |
| TCTCTTTGATTGCTCACTTG+AGG | 0.469042 | 8_3:-21475739 | Msa1281750:CDS |
| TTGCTGACTTTGCTAGGGAA+GGG | 0.469762 | 8_3:-21474114 | Msa1281750:CDS |
| TCATTTGATGGCAGTCAGGC+AGG | 0.473992 | 8_3:-21475772 | Msa1281750:CDS |
| TTTGCCATAGAGTTGCTTGT+AGG | 0.478328 | 8_3:+21475218 | None:intergenic |
| TAATAAAGTGACAGTAAGCT+TGG | 0.481162 | 8_3:-21475364 | Msa1281750:CDS |
| AACAGAATGCTATAGTTCTC+TGG | 0.483320 | 8_3:-21475911 | Msa1281750:intron |
| GACTTGTGATCCACCAGAAA+GGG | 0.489831 | 8_3:-21475889 | Msa1281750:CDS |
| TTAGGAGAAAGAACAATCTC+TGG | 0.490770 | 8_3:+21477258 | None:intergenic |
| CGTCTTAGAAATGCTTTCCA+AGG | 0.502094 | 8_3:-21477222 | Msa1281750:intron |
| AGGGATTCTATTGTCGGGCT+AGG | 0.506001 | 8_3:-21474282 | Msa1281750:CDS |
| GTGATGTATTAGCATCCCTT+TGG | 0.507732 | 8_3:+21474090 | None:intergenic |
| CATTGAAGGTTAAGAGGAAA+GGG | 0.507851 | 8_3:-21475845 | Msa1281750:CDS |
| AGTCTTGATGATGATGTCAT+TGG | 0.513392 | 8_3:-21474165 | Msa1281750:CDS |
| TTTGCTGACTTTGCTAGGGA+AGG | 0.520124 | 8_3:-21474115 | Msa1281750:CDS |
| GGGATGCATTGAAGGTTAAG+AGG | 0.521573 | 8_3:-21475851 | Msa1281750:CDS |
| CTATGGCAAAACATTGGAAG+AGG | 0.523562 | 8_3:-21475205 | Msa1281750:intron |
| CTTTGATTGCTCACTTGAGG+AGG | 0.526710 | 8_3:-21475736 | Msa1281750:CDS |
| AGATACCTCGGGTGACTACA+TGG | 0.528259 | 8_3:-21474142 | Msa1281750:CDS |
| TTATAAGGGATTCTATTGTC+GGG | 0.533935 | 8_3:-21474287 | Msa1281750:CDS |
| TGTAGGATGCAAGAGTTTCA+CGG | 0.538698 | 8_3:+21475235 | None:intergenic |
| GGACTTGTGATCCACCAGAA+AGG | 0.540252 | 8_3:-21475890 | Msa1281750:CDS |
| GCATTGAAGGTTAAGAGGAA+AGG | 0.540378 | 8_3:-21475846 | Msa1281750:CDS |
| TGGGCTTAGTAAGCTCCTAC+AGG | 0.549295 | 8_3:-21475389 | Msa1281750:CDS |
| AAGCTTGGAGGTTGCAAAGT+CGG | 0.554293 | 8_3:-21475349 | Msa1281750:CDS |
| AAATTGTTGTATAAATAAGA+AGG | 0.559863 | 8_3:-21473857 | Msa1281750:three_prime_UTR |
| TTTAATATCGCTCTTAAATG+TGG | 0.560661 | 8_3:-21475003 | Msa1281750:CDS |
| TTGCTAGGGAAGGGACCAAA+GGG | 0.566608 | 8_3:-21474105 | Msa1281750:CDS |
| TTGTTTGGATACTTAGCACC+AGG | 0.574565 | 8_3:-21475272 | Msa1281750:CDS |
| AAAGGGATGCAAAATTTGCA+AGG | 0.580223 | 8_3:-21475872 | Msa1281750:CDS |
| TGTCACTTTATTATGCCTGT+AGG | 0.584848 | 8_3:+21475374 | None:intergenic |
| TAAAGTGACAGTAAGCTTGG+AGG | 0.586007 | 8_3:-21475361 | Msa1281750:CDS |
| TTAAATTATGTTGTACATGT+TGG | 0.589905 | 8_3:-21474014 | Msa1281750:three_prime_UTR |
| TTTGCTAGGGAAGGGACCAA+AGG | 0.591319 | 8_3:-21474106 | Msa1281750:CDS |
| GCAACTCTATGGCAAAACAT+TGG | 0.593185 | 8_3:-21475211 | Msa1281750:CDS |
| GACATAGAAATGCTCAACAA+AGG | 0.603561 | 8_3:-21476755 | Msa1281750:CDS |
| GATGTCATTGGAGATACCTC+GGG | 0.603827 | 8_3:-21474153 | Msa1281750:CDS |
| TAACCTCAGAGCAGAATGAG+AGG | 0.628150 | 8_3:+21474059 | None:intergenic |
| AAGGGATGCAAAATTTGCAA+GGG | 0.631146 | 8_3:-21475871 | Msa1281750:CDS |
| CCCCGAGAAACATTTCGCAA+AGG | 0.634664 | 8_3:-21474961 | Msa1281750:intron |
| CCTTTGCGAAATGTTTCTCG+GGG | 0.655192 | 8_3:+21474961 | None:intergenic |
| GAACCTCTCATTCTGCTCTG+AGG | 0.659776 | 8_3:-21474062 | Msa1281750:three_prime_UTR |
| TGATGTCATTGGAGATACCT+CGG | 0.661309 | 8_3:-21474154 | Msa1281750:CDS |
| TGTGAGTGGCTGAGAAACTG+AGG | 0.667057 | 8_3:+21475704 | None:intergenic |
| AAAATCCATGTAGTCACCCG+AGG | 0.694388 | 8_3:+21474137 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTGATTTCAATAATATAAAA+GGG | + | chr8_3:21474764-21474783 | None:intergenic | 10.0% |
| !! | TTGATTTCAATAATATAAAA+GGG | + | chr8_3:21474764-21474783 | None:intergenic | 10.0% |
| !!! | TATTTTAAAAGAAAATATTG+AGG | - | chr8_3:21475616-21475635 | Msa1281750:intron | 10.0% |
| !!! | ATTTTAAAAGAAAATATTGA+GGG | - | chr8_3:21475617-21475636 | Msa1281750:intron | 10.0% |
| !!! | TTTTATTCCTTTTTTGTTTT+CGG | - | chr8_3:21474260-21474279 | Msa1281750:CDS | 15.0% |
| !!! | TTTTCAATGTTGTATTTTAT+TGG | - | chr8_3:21474576-21474595 | Msa1281750:intron | 15.0% |
| !!! | GTTGATTTCAATAATATAAA+AGG | + | chr8_3:21474765-21474784 | None:intergenic | 15.0% |
| !!! | GTTGATTTCAATAATATAAA+AGG | + | chr8_3:21474765-21474784 | None:intergenic | 15.0% |
| !! | AAAAAACTAGAATTTCAAAT+TGG | + | chr8_3:21474953-21474972 | None:intergenic | 15.0% |
| !!! | AATTTGAAATTCTAGTTTTT+TGG | - | chr8_3:21474952-21474971 | Msa1281750:intron | 15.0% |
| !!! | TTTTAAAAGAAAATATTGAG+GGG | - | chr8_3:21475618-21475637 | Msa1281750:intron | 15.0% |
| !! | ATTTACAATATTGATAAACT+TGG | + | chr8_3:21476452-21476471 | None:intergenic | 15.0% |
| !! | TTCTAATGAAAATTTCATTA+AGG | - | chr8_3:21476656-21476675 | Msa1281750:intron | 15.0% |
| !! | AAATTGTTGTATAAATAAGA+AGG | - | chr8_3:21477313-21477332 | Msa1281750:five_prime_UTR | 15.0% |
| !! | ATATATTGAAGTTATTATCA+TGG | - | chr8_3:21477352-21477371 | Msa1281750:five_prime_UTR | 15.0% |
| !! | AAAAAAACATTCATCTTTCA+TGG | - | chr8_3:21473875-21473894 | Msa1281750:three_prime_UTR | 20.0% |
| !!! | TTAAAAAACTGAACTTTTGT+AGG | - | chr8_3:21474109-21474128 | Msa1281750:CDS | 20.0% |
| !!! | GTAGGAATTTTTTTATTCAT+TGG | - | chr8_3:21474205-21474224 | Msa1281750:CDS | 20.0% |
| !!! | ATTTTTGTATCAATGGTTTT+TGG | - | chr8_3:21474300-21474319 | Msa1281750:intron | 20.0% |
| !!! | TAGTTTTTTGGTTACAAAAT+TGG | - | chr8_3:21474964-21474983 | Msa1281750:CDS | 20.0% |
| !! | TTAAATACAGATAGAGTAAT+TGG | + | chr8_3:21475002-21475021 | None:intergenic | 20.0% |
| !!! | TAGATGATTTCTTTTATCTA+AGG | - | chr8_3:21475125-21475144 | Msa1281750:intron | 20.0% |
| !!! | CTTTTAAAATACTTGAAAAC+AGG | + | chr8_3:21475607-21475626 | None:intergenic | 20.0% |
| !! | AGTTGAACTATAAATGAAAA+CGG | - | chr8_3:21475672-21475691 | Msa1281750:intron | 20.0% |
| !! | TTATTCATTCACTATGAATT+TGG | - | chr8_3:21476102-21476121 | Msa1281750:intron | 20.0% |
| !! | TATTCATTCACTATGAATTT+GGG | - | chr8_3:21476103-21476122 | Msa1281750:intron | 20.0% |
| !!! | TTTAATATTTTTGGAAACTC+TGG | - | chr8_3:21476274-21476293 | Msa1281750:intron | 20.0% |
| !! | TAATGAAAATTTCATTAAGG+TGG | - | chr8_3:21476659-21476678 | Msa1281750:intron | 20.0% |
| !! | AAAATGAAATGCAAAAATGT+TGG | + | chr8_3:21476754-21476773 | None:intergenic | 20.0% |
| !! | TTGAAAGAAATTACAGTAAA+TGG | + | chr8_3:21476793-21476812 | None:intergenic | 20.0% |
| !!! | TATTTGTAATCTTAATTTGC+TGG | - | chr8_3:21477132-21477151 | Msa1281750:intron | 20.0% |
| !! | TTAAATTATGTTGTACATGT+TGG | - | chr8_3:21477156-21477175 | Msa1281750:intron | 20.0% |
| ! | ATTGAATCACAAAGATTTGT+AGG | - | chr8_3:21474187-21474206 | Msa1281750:CDS | 25.0% |
| !!! | TATGCTGATTTTTGTATCAA+TGG | - | chr8_3:21474293-21474312 | Msa1281750:intron | 25.0% |
| ! | AGATGAAAAAGAGTTAATCT+TGG | - | chr8_3:21474386-21474405 | Msa1281750:intron | 25.0% |
| ! | TCTCAAAAATGAAAAGTCAA+TGG | + | chr8_3:21474550-21474569 | None:intergenic | 25.0% |
| !!! | TTATGTCACTTTCAATGATT+AGG | - | chr8_3:21474790-21474809 | Msa1281750:intron | 25.0% |
| !!! | TATGTCACTTTCAATGATTA+GGG | - | chr8_3:21474791-21474810 | Msa1281750:intron | 25.0% |
| ! | ACTTATAGGTGTAAAATTGA+GGG | + | chr8_3:21475063-21475082 | None:intergenic | 25.0% |
| ! | ACATCATTATCTTGACTTAT+AGG | + | chr8_3:21475077-21475096 | None:intergenic | 25.0% |
| ! | AAATGTTGTTAGATAGATTG+TGG | - | chr8_3:21475563-21475582 | Msa1281750:intron | 25.0% |
| ! | TTGAATTTGTGAAGCAAATT+AGG | + | chr8_3:21475720-21475739 | None:intergenic | 25.0% |
| ! | GAACATCATTATAGTAATTG+AGG | + | chr8_3:21476071-21476090 | None:intergenic | 25.0% |
| ! | TGAATGAATAAACAACATCT+TGG | + | chr8_3:21476093-21476112 | None:intergenic | 25.0% |
| ! | TTTAATATCGCTCTTAAATG+TGG | - | chr8_3:21476167-21476186 | Msa1281750:intron | 25.0% |
| !!! | TTTTAACTTATCTACAGTTC+TGG | + | chr8_3:21476360-21476379 | None:intergenic | 25.0% |
| !! | ATTCCAAACATTTTCTGAAT+GGG | + | chr8_3:21476831-21476850 | None:intergenic | 25.0% |
| !! | TTTTCACAGAGAAAATATCA+AGG | + | chr8_3:21477286-21477305 | None:intergenic | 25.0% |
| GAACATACCGAAAACAAAAA+AGG | + | chr8_3:21474270-21474289 | None:intergenic | 30.0% | |
| !! | TTGATGTTGATGATGGTTAT+TGG | - | chr8_3:21474340-21474359 | Msa1281750:intron | 30.0% |
| GGTTATTGGAAAATTGATGT+AGG | - | chr8_3:21474354-21474373 | Msa1281750:intron | 30.0% | |
| TGGAAAATTGATGTAGGAAT+TGG | - | chr8_3:21474360-21474379 | Msa1281750:intron | 30.0% | |
| !! | AAAGAGTTAATCTTGGTGTT+AGG | - | chr8_3:21474393-21474412 | Msa1281750:intron | 30.0% |
| ! | TTGTATTTTATTGGTGCAAC+CGG | - | chr8_3:21474585-21474604 | Msa1281750:intron | 30.0% |
| TTGTGTAAAAAAACAGGGTA+AGG | - | chr8_3:21474664-21474683 | Msa1281750:intron | 30.0% | |
| AATAATATAAAAGGGCAACC+CGG | + | chr8_3:21474756-21474775 | None:intergenic | 30.0% | |
| ACTTTCAATGATTAGGGTAA+AGG | - | chr8_3:21474797-21474816 | Msa1281750:intron | 30.0% | |
| AATAATATAAAAGGGCAACC+CGG | + | chr8_3:21474756-21474775 | None:intergenic | 30.0% | |
| GACTTATAGGTGTAAAATTG+AGG | + | chr8_3:21475064-21475083 | None:intergenic | 30.0% | |
| CAAAAGCTTATAGAACTGTT+AGG | + | chr8_3:21475104-21475123 | None:intergenic | 30.0% | |
| ! | CTAACAGTTCTATAAGCTTT+TGG | - | chr8_3:21475102-21475121 | Msa1281750:intron | 30.0% |
| GCATCATTACTTCAGAAAAA+TGG | + | chr8_3:21475197-21475216 | None:intergenic | 30.0% | |
| TTATCTAAGTTTGTCTAGCT+AGG | - | chr8_3:21475533-21475552 | Msa1281750:intron | 30.0% | |
| TGTTCTTCAAACATATCATG+TGG | - | chr8_3:21475740-21475759 | Msa1281750:CDS | 30.0% | |
| GTTCTTCAAACATATCATGT+GGG | - | chr8_3:21475741-21475760 | Msa1281750:CDS | 30.0% | |
| TAATAAAGTGACAGTAAGCT+TGG | - | chr8_3:21475806-21475825 | Msa1281750:CDS | 30.0% | |
| TAGATGATGATCACTTTGTT+TGG | - | chr8_3:21475883-21475902 | Msa1281750:CDS | 30.0% | |
| ! | ATTTGGGTGATTTTCTTTAC+AGG | - | chr8_3:21476119-21476138 | Msa1281750:intron | 30.0% |
| TTACAGGACATAAAAACTTG+TGG | - | chr8_3:21476135-21476154 | Msa1281750:intron | 30.0% | |
| GACATAAAAACTTGTGGTAA+AGG | - | chr8_3:21476141-21476160 | Msa1281750:intron | 30.0% | |
| GAAAGATACATGATATGTGT+CGG | + | chr8_3:21476628-21476647 | None:intergenic | 30.0% | |
| TTACCCATTCAGAAAATGTT+TGG | - | chr8_3:21476825-21476844 | Msa1281750:intron | 30.0% | |
| ! | GATTCCAAACATTTTCTGAA+TGG | + | chr8_3:21476832-21476851 | None:intergenic | 30.0% |
| GTTATAAGGGATTCTATTGT+CGG | - | chr8_3:21476882-21476901 | Msa1281750:intron | 30.0% | |
| TTATAAGGGATTCTATTGTC+GGG | - | chr8_3:21476883-21476902 | Msa1281750:intron | 30.0% | |
| !!! | ATTTTTTGCTGACTTTGCTA+GGG | - | chr8_3:21477051-21477070 | Msa1281750:intron | 30.0% |
| TTAGGAGAAAGAACAATCTC+TGG | + | chr8_3:21473915-21473934 | None:intergenic | 35.0% | |
| ! | GAGATTGTTGATGTTGATGA+TGG | - | chr8_3:21474333-21474352 | Msa1281750:intron | 35.0% |
| GACATAGAAATGCTCAACAA+AGG | - | chr8_3:21474415-21474434 | Msa1281750:intron | 35.0% | |
| TCACATGACAACAACTTTAC+CGG | + | chr8_3:21474607-21474626 | None:intergenic | 35.0% | |
| TAAAGTTGTTGTCATGTGAC+TGG | - | chr8_3:21474608-21474627 | Msa1281750:intron | 35.0% | |
| AGCCTCTTGTGTAAAAAAAC+AGG | - | chr8_3:21474658-21474677 | Msa1281750:intron | 35.0% | |
| GCCTCTTGTGTAAAAAAACA+GGG | - | chr8_3:21474659-21474678 | Msa1281750:intron | 35.0% | |
| !!! | ACCCTGTTTTTTTACACAAG+AGG | + | chr8_3:21474663-21474682 | None:intergenic | 35.0% |
| AACAGAATGCTATAGTTCTC+TGG | - | chr8_3:21475259-21475278 | Msa1281750:CDS | 35.0% | |
| AAAGGGATGCAAAATTTGCA+AGG | - | chr8_3:21475298-21475317 | Msa1281750:CDS | 35.0% | |
| AAGGGATGCAAAATTTGCAA+GGG | - | chr8_3:21475299-21475318 | Msa1281750:CDS | 35.0% | |
| CATTGAAGGTTAAGAGGAAA+GGG | - | chr8_3:21475325-21475344 | Msa1281750:CDS | 35.0% | |
| !! | GGTGTTATGCAGATTTTAGT+GGG | - | chr8_3:21475762-21475781 | Msa1281750:CDS | 35.0% |
| !! | TGTCACTTTATTATGCCTGT+AGG | + | chr8_3:21475799-21475818 | None:intergenic | 35.0% |
| TACCTTTGCGAAATGTTTCT+CGG | + | chr8_3:21476214-21476233 | None:intergenic | 35.0% | |
| GCTACGCATACTAATTGTAT+AGG | - | chr8_3:21476526-21476545 | Msa1281750:intron | 35.0% | |
| TATGCACCAACAGGTTATAA+GGG | - | chr8_3:21476869-21476888 | Msa1281750:intron | 35.0% | |
| TAGAATCCCTTATAACCTGT+TGG | + | chr8_3:21476878-21476897 | None:intergenic | 35.0% | |
| !! | AGTCTTGATGATGATGTCAT+TGG | - | chr8_3:21477005-21477024 | Msa1281750:intron | 35.0% |
| !!! | GATTTTTTGCTGACTTTGCT+AGG | - | chr8_3:21477050-21477069 | Msa1281750:intron | 35.0% |
| ! | GTGTGTGTGTTATTCTGAAT+TGG | - | chr8_3:21477234-21477253 | Msa1281750:CDS | 35.0% |
| CGTCTTAGAAATGCTTTCCA+AGG | - | chr8_3:21473948-21473967 | Msa1281750:three_prime_UTR | 40.0% | |
| ! | AATTTTGCATCCCTTTCTGG+TGG | + | chr8_3:21475294-21475313 | None:intergenic | 40.0% |
| ! | GCAAATTTTGCATCCCTTTC+TGG | + | chr8_3:21475297-21475316 | None:intergenic | 40.0% |
| ATTTGCAAGGGATGCATTGA+AGG | - | chr8_3:21475311-21475330 | Msa1281750:CDS | 40.0% | |
| GCATTGAAGGTTAAGAGGAA+AGG | - | chr8_3:21475324-21475343 | Msa1281750:CDS | 40.0% | |
| GTCGAGTCCAAATCATTTGA+TGG | - | chr8_3:21475386-21475405 | Msa1281750:CDS | 40.0% | |
| CTGACTGCCATCAAATGATT+TGG | + | chr8_3:21475396-21475415 | None:intergenic | 40.0% | |
| ! | CAAATCATTTGATGGCAGTC+AGG | - | chr8_3:21475394-21475413 | Msa1281750:CDS | 40.0% |
| TCTCTTTGATTGCTCACTTG+AGG | - | chr8_3:21475431-21475450 | Msa1281750:intron | 40.0% | |
| !! | CATGTCCTTACTTTTGTGAG+TGG | + | chr8_3:21475483-21475502 | None:intergenic | 40.0% |
| !! | GGGTGTTATGCAGATTTTAG+TGG | - | chr8_3:21475761-21475780 | Msa1281750:CDS | 40.0% |
| TAAAGTGACAGTAAGCTTGG+AGG | - | chr8_3:21475809-21475828 | Msa1281750:CDS | 40.0% | |
| TTGTTTGGATACTTAGCACC+AGG | - | chr8_3:21475898-21475917 | Msa1281750:CDS | 40.0% | |
| TGTAGGATGCAAGAGTTTCA+CGG | + | chr8_3:21475938-21475957 | None:intergenic | 40.0% | |
| TTTGCCATAGAGTTGCTTGT+AGG | + | chr8_3:21475955-21475974 | None:intergenic | 40.0% | |
| GCAACTCTATGGCAAAACAT+TGG | - | chr8_3:21475959-21475978 | Msa1281750:intron | 40.0% | |
| CTATGGCAAAACATTGGAAG+AGG | - | chr8_3:21475965-21475984 | Msa1281750:intron | 40.0% | |
| CGCTCTTAAATGTGGTAGTA+TGG | - | chr8_3:21476175-21476194 | Msa1281750:intron | 40.0% | |
| ACCTTTGCGAAATGTTTCTC+GGG | + | chr8_3:21476213-21476232 | None:intergenic | 40.0% | |
| CATCCGTTTACCAACCATTT+CGG | - | chr8_3:21476409-21476428 | Msa1281750:intron | 40.0% | |
| !! | ACTCCGAAATGGTTGGTAAA+CGG | + | chr8_3:21476415-21476434 | None:intergenic | 40.0% |
| TTGAAAACTCGACTCCGAAA+TGG | + | chr8_3:21476426-21476445 | None:intergenic | 40.0% | |
| ! | TTTCGGAGTCGAGTTTTCAA+AGG | - | chr8_3:21476426-21476445 | Msa1281750:intron | 40.0% |
| ATTCACTTCTATGCACCAAC+AGG | - | chr8_3:21476860-21476879 | Msa1281750:intron | 40.0% | |
| CTATGCACCAACAGGTTATA+AGG | - | chr8_3:21476868-21476887 | Msa1281750:intron | 40.0% | |
| TGATGTCATTGGAGATACCT+CGG | - | chr8_3:21477016-21477035 | Msa1281750:intron | 40.0% | |
| GTGATGTATTAGCATCCCTT+TGG | + | chr8_3:21477083-21477102 | None:intergenic | 40.0% | |
| AGACGTTCAGTGTCTGTGTT+AGG | + | chr8_3:21473933-21473952 | None:intergenic | 45.0% | |
| AGAGAGAGAGAGAGAAACCT+TGG | + | chr8_3:21473968-21473987 | None:intergenic | 45.0% | |
| GTTGTTGTCATGTGACTGGA+AGG | - | chr8_3:21474612-21474631 | Msa1281750:intron | 45.0% | |
| ! | TTACACAAGAGGCTGTTTCC+AGG | + | chr8_3:21474652-21474671 | None:intergenic | 45.0% |
| GCTGCGTACAATACACCAAA+AGG | - | chr8_3:21474686-21474705 | Msa1281750:intron | 45.0% | |
| GCGTACAATACACCAAAAGG+TGG | - | chr8_3:21474689-21474708 | Msa1281750:intron | 45.0% | |
| GCTGCGTACAATACACCAAA+AGG | - | chr8_3:21474686-21474705 | Msa1281750:intron | 45.0% | |
| GCGTACAATACACCAAAAGG+TGG | - | chr8_3:21474689-21474708 | Msa1281750:intron | 45.0% | |
| GACTTGTGATCCACCAGAAA+GGG | - | chr8_3:21475281-21475300 | Msa1281750:CDS | 45.0% | |
| GGGATGCATTGAAGGTTAAG+AGG | - | chr8_3:21475319-21475338 | Msa1281750:CDS | 45.0% | |
| GATCAAACAGCTGCAGATTC+TGG | - | chr8_3:21475347-21475366 | Msa1281750:CDS | 45.0% | |
| CTTTGATTGCTCACTTGAGG+AGG | - | chr8_3:21475434-21475453 | Msa1281750:intron | 45.0% | |
| CTCAGCCACTCACAAAAGTA+AGG | - | chr8_3:21475475-21475494 | Msa1281750:intron | 45.0% | |
| AAGCTTGGAGGTTGCAAAGT+CGG | - | chr8_3:21475821-21475840 | Msa1281750:CDS | 45.0% | |
| ACGGATCTGGAAAACATTCC+TGG | + | chr8_3:21475919-21475938 | None:intergenic | 45.0% | |
| ATGCAAGAGTTTCACGGATC+TGG | + | chr8_3:21475932-21475951 | None:intergenic | 45.0% | |
| GCATCCTACAAGCAACTCTA+TGG | - | chr8_3:21475948-21475967 | Msa1281750:intron | 45.0% | |
| CCTTTGCGAAATGTTTCTCG+GGG | + | chr8_3:21476212-21476231 | None:intergenic | 45.0% | |
| AAACTCGACTCCGAAATGGT+TGG | + | chr8_3:21476422-21476441 | None:intergenic | 45.0% | |
| GATGTCATTGGAGATACCTC+GGG | - | chr8_3:21477017-21477036 | Msa1281750:intron | 45.0% | |
| AAAATCCATGTAGTCACCCG+AGG | + | chr8_3:21477036-21477055 | None:intergenic | 45.0% | |
| !! | TTTGCTGACTTTGCTAGGGA+AGG | - | chr8_3:21477055-21477074 | Msa1281750:intron | 45.0% |
| !! | TTGCTGACTTTGCTAGGGAA+GGG | - | chr8_3:21477056-21477075 | Msa1281750:intron | 45.0% |
| TAACCTCAGAGCAGAATGAG+AGG | + | chr8_3:21477114-21477133 | None:intergenic | 45.0% | |
| !!! | TATAAGTTTTTTAATATTTT+TGG | - | chr8_3:21476265-21476284 | Msa1281750:intron | 5.0% |
| CGTCTTCAATCTGAGCTCTC+TGG | - | chr8_3:21474489-21474508 | Msa1281750:intron | 50.0% | |
| GTCATGTGACTGGAAGGTCA+CGG | - | chr8_3:21474618-21474637 | Msa1281750:intron | 50.0% | |
| TCATGTGACTGGAAGGTCAC+GGG | - | chr8_3:21474619-21474638 | Msa1281750:intron | 50.0% | |
| CTAAAGCTCCCGCATACGTA+GGG | + | chr8_3:21474729-21474748 | None:intergenic | 50.0% | |
| ACTAAAGCTCCCGCATACGT+AGG | + | chr8_3:21474730-21474749 | None:intergenic | 50.0% | |
| CTAAAGCTCCCGCATACGTA+GGG | + | chr8_3:21474729-21474748 | None:intergenic | 50.0% | |
| ACTAAAGCTCCCGCATACGT+AGG | + | chr8_3:21474730-21474749 | None:intergenic | 50.0% | |
| GGACTTGTGATCCACCAGAA+AGG | - | chr8_3:21475280-21475299 | Msa1281750:CDS | 50.0% | |
| ! | TCATTTGATGGCAGTCAGGC+AGG | - | chr8_3:21475398-21475417 | Msa1281750:CDS | 50.0% |
| TGTGAGTGGCTGAGAAACTG+AGG | + | chr8_3:21475469-21475488 | None:intergenic | 50.0% | |
| TGGGCTTAGTAAGCTCCTAC+AGG | - | chr8_3:21475781-21475800 | Msa1281750:CDS | 50.0% | |
| CCCCGAGAAACATTTCGCAA+AGG | - | chr8_3:21476209-21476228 | Msa1281750:intron | 50.0% | |
| AGGGATTCTATTGTCGGGCT+AGG | - | chr8_3:21476888-21476907 | Msa1281750:intron | 50.0% | |
| AGATACCTCGGGTGACTACA+TGG | - | chr8_3:21477028-21477047 | Msa1281750:intron | 50.0% | |
| TTTGCTAGGGAAGGGACCAA+AGG | - | chr8_3:21477064-21477083 | Msa1281750:intron | 50.0% | |
| TTGCTAGGGAAGGGACCAAA+GGG | - | chr8_3:21477065-21477084 | Msa1281750:intron | 50.0% | |
| GAACCTCTCATTCTGCTCTG+AGG | - | chr8_3:21477108-21477127 | Msa1281750:intron | 50.0% | |
| AAGGTCACGGGTTCAAGTCC+TGG | - | chr8_3:21474631-21474650 | Msa1281750:intron | 55.0% | |
| CAAAAGGTGGAACCCCTTCC+CGG | - | chr8_3:21474702-21474721 | Msa1281750:intron | 55.0% | |
| ! | ATGCGGGAGCTTTAGTGCAC+CGG | - | chr8_3:21474734-21474753 | Msa1281750:intron | 55.0% |
| CAAAAGGTGGAACCCCTTCC+CGG | - | chr8_3:21474702-21474721 | Msa1281750:intron | 55.0% | |
| ! | ATGCGGGAGCTTTAGTGCAC+CGG | - | chr8_3:21474734-21474753 | Msa1281750:intron | 55.0% |
| ! | CGGGAAGGGGTTCCACCTTT+TGG | + | chr8_3:21474704-21474723 | None:intergenic | 60.0% |
| CATACGTAGGGTCCGGGAAG+GGG | + | chr8_3:21474717-21474736 | None:intergenic | 60.0% | |
| GCATACGTAGGGTCCGGGAA+GGG | + | chr8_3:21474718-21474737 | None:intergenic | 60.0% | |
| CTTCCCGGACCCTACGTATG+CGG | - | chr8_3:21474717-21474736 | Msa1281750:intron | 60.0% | |
| TTCCCGGACCCTACGTATGC+GGG | - | chr8_3:21474718-21474737 | Msa1281750:intron | 60.0% | |
| ! | TGCGGGAGCTTTAGTGCACC+GGG | - | chr8_3:21474735-21474754 | Msa1281750:intron | 60.0% |
| ! | CGGGAAGGGGTTCCACCTTT+TGG | + | chr8_3:21474704-21474723 | None:intergenic | 60.0% |
| CATACGTAGGGTCCGGGAAG+GGG | + | chr8_3:21474717-21474736 | None:intergenic | 60.0% | |
| GCATACGTAGGGTCCGGGAA+GGG | + | chr8_3:21474718-21474737 | None:intergenic | 60.0% | |
| CTTCCCGGACCCTACGTATG+CGG | - | chr8_3:21474717-21474736 | Msa1281750:intron | 60.0% | |
| TTCCCGGACCCTACGTATGC+GGG | - | chr8_3:21474718-21474737 | Msa1281750:intron | 60.0% | |
| ! | TGCGGGAGCTTTAGTGCACC+GGG | - | chr8_3:21474735-21474754 | Msa1281750:intron | 60.0% |
| CGCATACGTAGGGTCCGGGA+AGG | + | chr8_3:21474719-21474738 | None:intergenic | 65.0% | |
| CTCCCGCATACGTAGGGTCC+GGG | + | chr8_3:21474723-21474742 | None:intergenic | 65.0% | |
| GCTCCCGCATACGTAGGGTC+CGG | + | chr8_3:21474724-21474743 | None:intergenic | 65.0% | |
| CGCATACGTAGGGTCCGGGA+AGG | + | chr8_3:21474719-21474738 | None:intergenic | 65.0% | |
| CTCCCGCATACGTAGGGTCC+GGG | + | chr8_3:21474723-21474742 | None:intergenic | 65.0% | |
| GCTCCCGCATACGTAGGGTC+CGG | + | chr8_3:21474724-21474743 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 21473789 | 21477403 | 21473789 | ID=Msa1281750;Name=Msa1281750 |
| chr8_3 | mRNA | 21473789 | 21477403 | 21473789 | ID=Msa1281750-mRNA-1;Parent=Msa1281750;Name=Msa1281750-mRNA-1;_AED=0.14;_eAED=0.14;_QI=105|1|1|1|1|1|6|309|321 |
| chr8_3 | exon | 21473789 | 21474310 | 21473789 | ID=Msa1281750-mRNA-1:exon:7828;Parent=Msa1281750-mRNA-1 |
| chr8_3 | exon | 21474962 | 21475051 | 21474962 | ID=Msa1281750-mRNA-1:exon:7827;Parent=Msa1281750-mRNA-1 |
| chr8_3 | exon | 21475206 | 21475418 | 21475206 | ID=Msa1281750-mRNA-1:exon:7826;Parent=Msa1281750-mRNA-1 |
| chr8_3 | exon | 21475701 | 21475928 | 21475701 | ID=Msa1281750-mRNA-1:exon:7825;Parent=Msa1281750-mRNA-1 |
| chr8_3 | exon | 21476671 | 21476816 | 21476671 | ID=Msa1281750-mRNA-1:exon:7824;Parent=Msa1281750-mRNA-1 |
| chr8_3 | exon | 21477223 | 21477403 | 21477223 | ID=Msa1281750-mRNA-1:exon:7823;Parent=Msa1281750-mRNA-1 |
| chr8_3 | five_prime_UTR | 21477299 | 21477403 | 21477299 | ID=Msa1281750-mRNA-1:five_prime_utr;Parent=Msa1281750-mRNA-1 |
| chr8_3 | CDS | 21477223 | 21477298 | 21477223 | ID=Msa1281750-mRNA-1:cds;Parent=Msa1281750-mRNA-1 |
| chr8_3 | CDS | 21476671 | 21476816 | 21476671 | ID=Msa1281750-mRNA-1:cds;Parent=Msa1281750-mRNA-1 |
| chr8_3 | CDS | 21475701 | 21475928 | 21475701 | ID=Msa1281750-mRNA-1:cds;Parent=Msa1281750-mRNA-1 |
| chr8_3 | CDS | 21475206 | 21475418 | 21475206 | ID=Msa1281750-mRNA-1:cds;Parent=Msa1281750-mRNA-1 |
| chr8_3 | CDS | 21474962 | 21475051 | 21474962 | ID=Msa1281750-mRNA-1:cds;Parent=Msa1281750-mRNA-1 |
| chr8_3 | CDS | 21474098 | 21474310 | 21474098 | ID=Msa1281750-mRNA-1:cds;Parent=Msa1281750-mRNA-1 |
| chr8_3 | three_prime_UTR | 21473789 | 21474097 | 21473789 | ID=Msa1281750-mRNA-1:three_prime_utr;Parent=Msa1281750-mRNA-1 |
| Gene Sequence |
| Protein sequence |
