Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1321060 | XP_003627774.1 | 95.950 | 321 | 13 | 0 | 1 | 321 | 1 | 321 | 0.0 | 639 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1321060 | sp|Q9SE45|ANXD3_ARATH | 55.660 | 318 | 138 | 2 | 1 | 315 | 1 | 318 | 9.55e-126 | 365 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1321060 | G7LF82 | 95.950 | 321 | 13 | 0 | 1 | 321 | 1 | 321 | 0.0 | 639 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0685060 | Msa1321060 | 0.805835 | 1.101729e-49 | -8.615850e-47 |
| Msa0134880 | Msa1321060 | 0.838594 | 2.621114e-57 | -8.615850e-47 |
| Msa0179700 | Msa1321060 | 0.801618 | 8.272026e-49 | -8.615850e-47 |
| Msa1240450 | Msa1321060 | 0.894726 | 1.880214e-75 | -8.615850e-47 |
| Msa1281750 | Msa1321060 | 0.896095 | 5.125248e-76 | -8.615850e-47 |
| Msa1321060 | Msa1338540 | 0.824919 | 6.218948e-54 | -8.615850e-47 |
| Msa1321060 | Msa1356600 | -0.803645 | 3.158588e-49 | -8.615850e-47 |
| Msa1321060 | Msa1439410 | 0.805596 | 1.236757e-49 | -8.615850e-47 |
| Msa1010020 | Msa1321060 | 0.805635 | 1.213571e-49 | -8.615850e-47 |
| Msa1031410 | Msa1321060 | 0.817552 | 3.108787e-52 | -8.615850e-47 |
| Msa1101160 | Msa1321060 | 0.801064 | 1.073957e-48 | -8.615850e-47 |
| Msa0271540 | Msa1321060 | 0.804210 | 2.409982e-49 | -8.615850e-47 |
| Msa1184120 | Msa1321060 | 0.803114 | 4.067808e-49 | -8.615850e-47 |
| Msa1186230 | Msa1321060 | 0.861365 | 1.079663e-63 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1321060 | MtrunA17_Chr8g0352571 | 95.950 | 321 | 13 | 0 | 1 | 321 | 1 | 321 | 0.0 | 639 |
| Msa1321060 | MtrunA17_Chr5g0425971 | 43.810 | 315 | 174 | 1 | 1 | 315 | 1 | 312 | 6.64e-84 | 256 |
| Msa1321060 | MtrunA17_Chr8g0382281 | 43.354 | 316 | 176 | 1 | 1 | 316 | 1 | 313 | 9.74e-81 | 248 |
| Msa1321060 | MtrunA17_Chr8g0352621 | 40.836 | 311 | 181 | 1 | 6 | 316 | 4 | 311 | 4.71e-78 | 241 |
| Msa1321060 | MtrunA17_Chr8g0393281 | 42.271 | 317 | 176 | 3 | 1 | 315 | 1 | 312 | 1.61e-77 | 239 |
| Msa1321060 | MtrunA17_Chr3g0083921 | 41.139 | 316 | 182 | 2 | 1 | 316 | 1 | 312 | 7.89e-76 | 235 |
| Msa1321060 | MtrunA17_Chr3g0083901 | 40.523 | 306 | 179 | 1 | 11 | 316 | 10 | 312 | 1.07e-75 | 234 |
| Msa1321060 | MtrunA17_Chr8g0352611 | 40.823 | 316 | 182 | 2 | 1 | 316 | 1 | 311 | 1.67e-74 | 231 |
| Msa1321060 | MtrunA17_Chr8g0352591 | 40.694 | 317 | 173 | 3 | 1 | 317 | 1 | 302 | 2.95e-72 | 225 |
| Msa1321060 | MtrunA17_Chr6g0479411 | 38.170 | 317 | 189 | 3 | 1 | 315 | 28 | 339 | 1.52e-66 | 212 |
| Msa1321060 | MtrunA17_Chr6g0479421 | 40.063 | 317 | 183 | 3 | 1 | 315 | 1 | 312 | 2.92e-66 | 210 |
| Msa1321060 | MtrunA17_Chr2g0293441 | 38.158 | 304 | 185 | 1 | 12 | 315 | 11 | 311 | 6.18e-66 | 209 |
| Msa1321060 | MtrunA17_Chr1g0162071 | 35.127 | 316 | 200 | 3 | 1 | 315 | 1 | 312 | 5.26e-64 | 204 |
| Msa1321060 | MtrunA17_Chr1g0210981 | 37.855 | 317 | 190 | 3 | 1 | 315 | 1 | 312 | 1.04e-63 | 204 |
| Msa1321060 | MtrunA17_Chr8g0352581 | 38.199 | 322 | 169 | 8 | 14 | 317 | 4 | 313 | 2.23e-59 | 192 |
| Msa1321060 | MtrunA17_Chr6g0479391 | 38.079 | 302 | 180 | 3 | 16 | 315 | 16 | 312 | 1.36e-58 | 191 |
| Msa1321060 | MtrunA17_Chr6g0461141 | 30.421 | 309 | 200 | 6 | 16 | 316 | 9 | 310 | 4.92e-35 | 129 |
| Msa1321060 | MtrunA17_Chr3g0084011 | 50.685 | 73 | 35 | 1 | 1 | 73 | 1 | 72 | 1.26e-15 | 71.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1321060 | AT2G38760.1 | 55.660 | 318 | 138 | 2 | 1 | 315 | 1 | 318 | 9.71e-127 | 365 |
| Msa1321060 | AT5G10230.1 | 44.762 | 315 | 171 | 1 | 1 | 315 | 1 | 312 | 5.96e-87 | 264 |
| Msa1321060 | AT5G65020.1 | 44.340 | 318 | 173 | 2 | 1 | 317 | 1 | 315 | 6.28e-86 | 261 |
| Msa1321060 | AT5G10220.1 | 42.902 | 317 | 176 | 2 | 1 | 315 | 1 | 314 | 6.17e-83 | 254 |
| Msa1321060 | AT5G12380.1 | 42.902 | 317 | 177 | 2 | 1 | 317 | 1 | 313 | 2.50e-81 | 249 |
| Msa1321060 | AT1G35720.1 | 41.562 | 320 | 177 | 3 | 1 | 316 | 1 | 314 | 3.59e-78 | 241 |
| Msa1321060 | AT5G65020.2 | 43.345 | 293 | 162 | 2 | 26 | 317 | 11 | 300 | 4.31e-75 | 233 |
| Msa1321060 | AT1G68090.1 | 34.494 | 316 | 203 | 2 | 1 | 315 | 1 | 313 | 1.85e-61 | 198 |
| Msa1321060 | AT2G38750.1 | 33.861 | 316 | 175 | 8 | 22 | 316 | 15 | 317 | 1.20e-43 | 152 |
| Msa1321060 | AT2G38750.2 | 33.974 | 312 | 172 | 8 | 26 | 316 | 2 | 300 | 1.83e-43 | 151 |
| Msa1321060 | AT1G68090.2 | 31.621 | 253 | 169 | 2 | 1 | 252 | 1 | 250 | 3.92e-41 | 144 |
Find 65 sgRNAs with CRISPR-Local
Find 134 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTATGCACCAACAGGTTATA+AGG | 0.231265 | 8_4:+26248078 | Msa1321060:intron |
| GATCAAACAGCTGCAGATTC+TGG | 0.323861 | 8_4:+26246553 | Msa1321060:CDS |
| CGCTCTTAAATGTGGTAGTA+TGG | 0.329332 | 8_4:+26247381 | Msa1321060:CDS |
| TAGATGATGATCACTTTGTT+TGG | 0.349916 | 8_4:+26247089 | Msa1321060:CDS |
| AAAGAGTTAATCTTGGTGTT+AGG | 0.350373 | 8_4:+26245898 | Msa1321060:CDS |
| ATGCAAGAGTTTCACGGATC+TGG | 0.369500 | 8_4:-26247135 | None:intergenic |
| GCATCCTACAAGCAACTCTA+TGG | 0.375541 | 8_4:+26247154 | Msa1321060:CDS |
| CTGACTGCCATCAAATGATT+TGG | 0.378505 | 8_4:-26246599 | None:intergenic |
| ACGGATCTGGAAAACATTCC+TGG | 0.388969 | 8_4:-26247122 | None:intergenic |
| GTTATAAGGGATTCTATTGT+CGG | 0.406879 | 8_4:+26248092 | Msa1321060:CDS |
| GTCGAGTCCAAATCATTTGA+TGG | 0.419857 | 8_4:+26246592 | Msa1321060:CDS |
| ATATATTGAAGTTATTATCA+TGG | 0.421522 | 8_4:+26248559 | Msa1321060:three_prime_UTR |
| TACCTTTGCGAAATGTTTCT+CGG | 0.422016 | 8_4:-26247417 | None:intergenic |
| AGACGTTCAGTGTCTGTGTT+AGG | 0.424878 | 8_4:-26245461 | None:intergenic |
| TATGCACCAACAGGTTATAA+GGG | 0.431985 | 8_4:+26248079 | Msa1321060:intron |
| ATTTGCAAGGGATGCATTGA+AGG | 0.432105 | 8_4:+26246517 | Msa1321060:CDS |
| ACCTTTGCGAAATGTTTCTC+GGG | 0.432951 | 8_4:-26247416 | None:intergenic |
| CAAATCATTTGATGGCAGTC+AGG | 0.456470 | 8_4:+26246600 | Msa1321060:CDS |
| GTGATGTATTAGTATCCCTT+TGG | 0.460356 | 8_4:-26248290 | None:intergenic |
| TATTTGTAATCTGAATTTGA+TGG | 0.463844 | 8_4:+26248345 | Msa1321060:three_prime_UTR |
| TCTCTTTGATTGCTCACTTG+AGG | 0.469042 | 8_4:+26246637 | Msa1321060:CDS |
| TTAGGAGAAGGAACAATCTC+TGG | 0.472780 | 8_4:-26245443 | None:intergenic |
| TCATTTGATGGCAGTCAGGC+AGG | 0.473992 | 8_4:+26246604 | Msa1321060:CDS |
| GACTTGTGATCCAGCAGAAA+GGG | 0.474999 | 8_4:+26246487 | Msa1321060:CDS |
| CGTCTTCAATCTGAACTCTC+TGG | 0.477552 | 8_4:+26245994 | Msa1321060:CDS |
| TTTGCCATAGAGTTGCTTGT+AGG | 0.478328 | 8_4:-26247158 | None:intergenic |
| TAATAAAGTGACAGTAAGCT+TGG | 0.481162 | 8_4:+26247012 | Msa1321060:CDS |
| AACAGAATGCTATAGTTCTC+TGG | 0.483320 | 8_4:+26246465 | Msa1321060:intron |
| CGTCTTAGAAATGCTTTCCA+AGG | 0.502094 | 8_4:+26245479 | Msa1321060:CDS |
| TTGCTGACTTTGCTAGGGAA+AGG | 0.503452 | 8_4:+26248266 | Msa1321060:CDS |
| AGGGATTCTATTGTCGGGCT+AGG | 0.506001 | 8_4:+26248098 | Msa1321060:CDS |
| CATTGAAGGTTAAGAGGAAA+GGG | 0.507851 | 8_4:+26246531 | Msa1321060:CDS |
| AGTCTTGATGATGATGTCAT+TGG | 0.513392 | 8_4:+26248215 | Msa1321060:CDS |
| GGGATGCATTGAAGGTTAAG+AGG | 0.521573 | 8_4:+26246525 | Msa1321060:CDS |
| CTATGGCAAAACATTGGAAG+AGG | 0.523562 | 8_4:+26247171 | Msa1321060:CDS |
| CTTTGATTGCTCACTTGAGG+AGG | 0.526710 | 8_4:+26246640 | Msa1321060:CDS |
| AGATACCTCGGGTGACTACA+TGG | 0.528259 | 8_4:+26248238 | Msa1321060:CDS |
| TTATAAGGGATTCTATTGTC+GGG | 0.533935 | 8_4:+26248093 | Msa1321060:CDS |
| TGTAGGATGCAAGAGTTTCA+CGG | 0.538698 | 8_4:-26247141 | None:intergenic |
| GGACTTGTGATCCAGCAGAA+AGG | 0.539280 | 8_4:+26246486 | Msa1321060:CDS |
| GCATTGAAGGTTAAGAGGAA+AGG | 0.540378 | 8_4:+26246530 | Msa1321060:CDS |
| TGGGCTTAGTAAGCTCCTAC+AGG | 0.549295 | 8_4:+26246987 | Msa1321060:CDS |
| AAGCTTGGAGGTTGCAAAGT+CGG | 0.554293 | 8_4:+26247027 | Msa1321060:CDS |
| AAATTGTTGTATAAATAAGA+AGG | 0.559863 | 8_4:+26248520 | Msa1321060:three_prime_UTR |
| TTTAATATCGCTCTTAAATG+TGG | 0.560661 | 8_4:+26247373 | Msa1321060:CDS |
| TAGAAATGCTCAACAAAGGA+AGG | 0.572954 | 8_4:+26245924 | Msa1321060:CDS |
| TTGTTTGGATACTTAGCACC+AGG | 0.574565 | 8_4:+26247104 | Msa1321060:CDS |
| TTGCTAGGGAAAGGACCAAA+GGG | 0.576100 | 8_4:+26248275 | Msa1321060:CDS |
| AAAGGGATGCAAAATTTGCA+AGG | 0.580223 | 8_4:+26246504 | Msa1321060:CDS |
| TGTCACTTTATTATGCCTGT+AGG | 0.584848 | 8_4:-26247002 | None:intergenic |
| TAAAGTGACAGTAAGCTTGG+AGG | 0.586007 | 8_4:+26247015 | Msa1321060:CDS |
| GAACCTCTCATTCTGTTCTG+AGG | 0.586740 | 8_4:+26248321 | Msa1321060:three_prime_UTR |
| TTAAATTATGTTGTACATGT+TGG | 0.589905 | 8_4:+26248369 | Msa1321060:three_prime_UTR |
| GCAACTCTATGGCAAAACAT+TGG | 0.593185 | 8_4:+26247165 | Msa1321060:CDS |
| TCAGTGTCTGTGTTAGGAGA+AGG | 0.593736 | 8_4:-26245455 | None:intergenic |
| GACATAGAAATGCTCAACAA+AGG | 0.603561 | 8_4:+26245920 | Msa1321060:CDS |
| GATGTCATTGGAGATACCTC+GGG | 0.603827 | 8_4:+26248227 | Msa1321060:CDS |
| TAACCTCAGAACAGAATGAG+AGG | 0.628567 | 8_4:-26248324 | None:intergenic |
| AAGGGATGCAAAATTTGCAA+GGG | 0.631146 | 8_4:+26246505 | Msa1321060:CDS |
| TTTGCTAGGGAAAGGACCAA+AGG | 0.633041 | 8_4:+26248274 | Msa1321060:CDS |
| CCCCGAGAAACATTTCGCAA+AGG | 0.634664 | 8_4:+26247415 | Msa1321060:CDS |
| CCTTTGCGAAATGTTTCTCG+GGG | 0.655192 | 8_4:-26247415 | None:intergenic |
| TGATGTCATTGGAGATACCT+CGG | 0.661309 | 8_4:+26248226 | Msa1321060:CDS |
| TGTGAGTGGCTGAGAAACTG+AGG | 0.667057 | 8_4:-26246672 | None:intergenic |
| AAAATCCATGTAGTCACCCG+AGG | 0.694388 | 8_4:-26248243 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTTTTTTATGTTTTTATTAA+TGG | + | chr8_4:26245624-26245643 | Msa1321060:intron | 10.0% |
| !!! | TATTTTAAAAGAAAATATTG+AGG | + | chr8_4:26246822-26246841 | Msa1321060:intron | 10.0% |
| !!! | ATTTTAAAAGAAAATATTGA+GGG | + | chr8_4:26246823-26246842 | Msa1321060:intron | 10.0% |
| !!! | ATATCTTTTTTGTATTCTTT+TGG | + | chr8_4:26245769-26245788 | Msa1321060:intron | 15.0% |
| !!! | GTTGATTTCAATAATATATA+CGG | - | chr8_4:26246104-26246123 | None:intergenic | 15.0% |
| !! | AAAAAACTAGAATTTCAAAT+TGG | - | chr8_4:26246159-26246178 | None:intergenic | 15.0% |
| !!! | TAGTTTTTTTGTTACAAAAT+TGG | + | chr8_4:26246170-26246189 | Msa1321060:intron | 15.0% |
| !!! | ATAACAATTTTATAAGCTTT+TGG | + | chr8_4:26246307-26246326 | Msa1321060:intron | 15.0% |
| !!! | TACATTATTTCTTATATCTA+AGG | + | chr8_4:26246330-26246349 | Msa1321060:intron | 15.0% |
| !!! | TTTTAAAAGAAAATATTGAG+GGG | + | chr8_4:26246824-26246843 | Msa1321060:intron | 15.0% |
| !! | ATTTACAATATTGATAAACT+TGG | - | chr8_4:26247667-26247686 | None:intergenic | 15.0% |
| !! | TTCTAATGAAAATTTCATTA+AGG | + | chr8_4:26247866-26247885 | Msa1321060:intron | 15.0% |
| !! | AAATTGTTGTATAAATAAGA+AGG | + | chr8_4:26248520-26248539 | Msa1321060:three_prime_UTR | 15.0% |
| !! | ATATATTGAAGTTATTATCA+TGG | + | chr8_4:26248559-26248578 | Msa1321060:three_prime_UTR | 15.0% |
| !! | TCAAAAAAAATCATCTTTCA+TGG | + | chr8_4:26245406-26245425 | Msa1321060:exon | 20.0% |
| !!! | GAGGAATTTTTTTTATTCAT+TGG | + | chr8_4:26245710-26245729 | Msa1321060:intron | 20.0% |
| !! | TTAAATACAGATAGAGTAAT+AGG | - | chr8_4:26246208-26246227 | None:intergenic | 20.0% |
| !!! | CTTTTAAAATACTTGAAAAC+AGG | - | chr8_4:26246813-26246832 | None:intergenic | 20.0% |
| !! | AGTTGAACTATAAATGAAAA+CGG | + | chr8_4:26246878-26246897 | Msa1321060:intron | 20.0% |
| !! | TTATTCATTCACTATGAATT+TGG | + | chr8_4:26247308-26247327 | Msa1321060:intron | 20.0% |
| !! | TATTCATTCACTATGAATTT+GGG | + | chr8_4:26247309-26247328 | Msa1321060:intron | 20.0% |
| !!! | TTTAATATTTTTGGAAACTC+TGG | + | chr8_4:26247480-26247499 | Msa1321060:intron | 20.0% |
| !! | TAATGAAAATTTCATTAAGG+TGG | + | chr8_4:26247869-26247888 | Msa1321060:intron | 20.0% |
| !! | AAAATGAAATGCAAAAATGT+TGG | - | chr8_4:26247964-26247983 | None:intergenic | 20.0% |
| !! | TTGAAAGAAATTACAGTAAA+TGG | - | chr8_4:26248003-26248022 | None:intergenic | 20.0% |
| !! | TATTTGTAATCTGAATTTGA+TGG | + | chr8_4:26248345-26248364 | Msa1321060:three_prime_UTR | 20.0% |
| !! | TTAAATTATGTTGTACATGT+TGG | + | chr8_4:26248369-26248388 | Msa1321060:three_prime_UTR | 20.0% |
| ! | GGTTATTGGAAAATTTATGT+AGG | + | chr8_4:26245859-26245878 | Msa1321060:intron | 25.0% |
| ! | TGGAAAATTTATGTAGGAAT+TGG | + | chr8_4:26245865-26245884 | Msa1321060:intron | 25.0% |
| ! | AGATGAAAAAGAGTTAATCT+TGG | + | chr8_4:26245891-26245910 | Msa1321060:CDS | 25.0% |
| ! | TCTCAAAAATGAAAAGTCAA+TGG | - | chr8_4:26246055-26246074 | None:intergenic | 25.0% |
| ! | ACATCATTATCTTGACTTAT+AGG | - | chr8_4:26246282-26246301 | None:intergenic | 25.0% |
| ! | CATCATTACTTCAGAAAAAA+TGG | - | chr8_4:26246402-26246421 | None:intergenic | 25.0% |
| ! | AAATGTTGTTAGATAGATTG+TGG | + | chr8_4:26246769-26246788 | Msa1321060:intron | 25.0% |
| ! | TTGAATTTGTGAAGCAAATT+AGG | - | chr8_4:26246926-26246945 | None:intergenic | 25.0% |
| ! | GAACATCATTATAGTAATTG+AGG | - | chr8_4:26247277-26247296 | None:intergenic | 25.0% |
| ! | TGAATGAATAAACAACATCT+TGG | - | chr8_4:26247299-26247318 | None:intergenic | 25.0% |
| ! | TTTAATATCGCTCTTAAATG+TGG | + | chr8_4:26247373-26247392 | Msa1321060:CDS | 25.0% |
| !!! | TTTTAACTTATCTACAGTTC+TGG | - | chr8_4:26247575-26247594 | None:intergenic | 25.0% |
| !! | ATTCCAAACATTTTCTGAAT+GGG | - | chr8_4:26248041-26248060 | None:intergenic | 25.0% |
| !!! | ATGTGTGTTTTATTCTGAAT+TGG | + | chr8_4:26248441-26248460 | Msa1321060:three_prime_UTR | 25.0% |
| !!! | ATTTCTTTTAGTTTTCACAG+AGG | - | chr8_4:26248504-26248523 | None:intergenic | 25.0% |
| TGAATCACAAAGATTTGTAG+AGG | + | chr8_4:26245691-26245710 | Msa1321060:intron | 30.0% | |
| !!! | TATGCTGATTTTTGTATCGA+TGG | + | chr8_4:26245798-26245817 | Msa1321060:intron | 30.0% |
| !! | ATTTTTGTATCGATGGTTGT+TGG | + | chr8_4:26245805-26245824 | Msa1321060:intron | 30.0% |
| !! | TTGATGTTGATGATGGTTAT+TGG | + | chr8_4:26245845-26245864 | Msa1321060:intron | 30.0% |
| !! | AAAGAGTTAATCTTGGTGTT+AGG | + | chr8_4:26245898-26245917 | Msa1321060:CDS | 30.0% |
| GACTTATAGGTGTAAAATTG+AGG | - | chr8_4:26246269-26246288 | None:intergenic | 30.0% | |
| TTATCTAAGTTTGTCTAGCT+AGG | + | chr8_4:26246739-26246758 | Msa1321060:intron | 30.0% | |
| !! | AGTGTTATGCAGATTTTAGT+GGG | + | chr8_4:26246968-26246987 | Msa1321060:intron | 30.0% |
| TAATAAAGTGACAGTAAGCT+TGG | + | chr8_4:26247012-26247031 | Msa1321060:CDS | 30.0% | |
| TAGATGATGATCACTTTGTT+TGG | + | chr8_4:26247089-26247108 | Msa1321060:CDS | 30.0% | |
| ! | ATTTGGGTGATTTTCTTTAC+AGG | + | chr8_4:26247325-26247344 | Msa1321060:intron | 30.0% |
| TTACAGGACATAAAAACTTG+TGG | + | chr8_4:26247341-26247360 | Msa1321060:intron | 30.0% | |
| GACATAAAAACTTGTGGTAA+AGG | + | chr8_4:26247347-26247366 | Msa1321060:CDS | 30.0% | |
| GAAAGATACATGATATGTGT+CGG | - | chr8_4:26247838-26247857 | None:intergenic | 30.0% | |
| TTACCCATTCAGAAAATGTT+TGG | + | chr8_4:26248035-26248054 | Msa1321060:intron | 30.0% | |
| ! | GATTCCAAACATTTTCTGAA+TGG | - | chr8_4:26248042-26248061 | None:intergenic | 30.0% |
| GTTATAAGGGATTCTATTGT+CGG | + | chr8_4:26248092-26248111 | Msa1321060:CDS | 30.0% | |
| TTATAAGGGATTCTATTGTC+GGG | + | chr8_4:26248093-26248112 | Msa1321060:CDS | 30.0% | |
| !!! | ATTTTTTGCTGACTTTGCTA+GGG | + | chr8_4:26248261-26248280 | Msa1321060:CDS | 30.0% |
| ! | TTTTCACAGAGGAAATATCA+AGG | - | chr8_4:26248493-26248512 | None:intergenic | 30.0% |
| AAAGAGAAAGAGAGAAACCT+TGG | - | chr8_4:26245499-26245518 | None:intergenic | 35.0% | |
| ! | GAGATTGTTGATGTTGATGA+TGG | + | chr8_4:26245838-26245857 | Msa1321060:intron | 35.0% |
| GACATAGAAATGCTCAACAA+AGG | + | chr8_4:26245920-26245939 | Msa1321060:CDS | 35.0% | |
| TAGAAATGCTCAACAAAGGA+AGG | + | chr8_4:26245924-26245943 | Msa1321060:CDS | 35.0% | |
| AACAGAATGCTATAGTTCTC+TGG | + | chr8_4:26246465-26246484 | Msa1321060:intron | 35.0% | |
| AAAGGGATGCAAAATTTGCA+AGG | + | chr8_4:26246504-26246523 | Msa1321060:CDS | 35.0% | |
| AAGGGATGCAAAATTTGCAA+GGG | + | chr8_4:26246505-26246524 | Msa1321060:CDS | 35.0% | |
| CATTGAAGGTTAAGAGGAAA+GGG | + | chr8_4:26246531-26246550 | Msa1321060:CDS | 35.0% | |
| ! | GAGTGTTATGCAGATTTTAG+TGG | + | chr8_4:26246967-26246986 | Msa1321060:intron | 35.0% |
| !! | TGTCACTTTATTATGCCTGT+AGG | - | chr8_4:26247005-26247024 | None:intergenic | 35.0% |
| TACCTTTGCGAAATGTTTCT+CGG | - | chr8_4:26247420-26247439 | None:intergenic | 35.0% | |
| GCTACGCATACTAATTGTAT+AGG | + | chr8_4:26247736-26247755 | Msa1321060:intron | 35.0% | |
| TATGCACCAACAGGTTATAA+GGG | + | chr8_4:26248079-26248098 | Msa1321060:intron | 35.0% | |
| TAGAATCCCTTATAACCTGT+TGG | - | chr8_4:26248088-26248107 | None:intergenic | 35.0% | |
| !! | AGTCTTGATGATGATGTCAT+TGG | + | chr8_4:26248215-26248234 | Msa1321060:CDS | 35.0% |
| !!! | GATTTTTTGCTGACTTTGCT+AGG | + | chr8_4:26248260-26248279 | Msa1321060:CDS | 35.0% |
| GTGATGTATTAGTATCCCTT+TGG | - | chr8_4:26248293-26248312 | None:intergenic | 35.0% | |
| TTAGGAGAAGGAACAATCTC+TGG | - | chr8_4:26245446-26245465 | None:intergenic | 40.0% | |
| CGTCTTAGAAATGCTTTCCA+AGG | + | chr8_4:26245479-26245498 | Msa1321060:CDS | 40.0% | |
| ! | AATTTTGCATCCCTTTCTGC+TGG | - | chr8_4:26246500-26246519 | None:intergenic | 40.0% |
| ATTTGCAAGGGATGCATTGA+AGG | + | chr8_4:26246517-26246536 | Msa1321060:CDS | 40.0% | |
| GCATTGAAGGTTAAGAGGAA+AGG | + | chr8_4:26246530-26246549 | Msa1321060:CDS | 40.0% | |
| GTCGAGTCCAAATCATTTGA+TGG | + | chr8_4:26246592-26246611 | Msa1321060:CDS | 40.0% | |
| CTGACTGCCATCAAATGATT+TGG | - | chr8_4:26246602-26246621 | None:intergenic | 40.0% | |
| ! | CAAATCATTTGATGGCAGTC+AGG | + | chr8_4:26246600-26246619 | Msa1321060:CDS | 40.0% |
| TCTCTTTGATTGCTCACTTG+AGG | + | chr8_4:26246637-26246656 | Msa1321060:CDS | 40.0% | |
| !! | CATGTCCTTACTTTTGTGAG+TGG | - | chr8_4:26246689-26246708 | None:intergenic | 40.0% |
| TAAAGTGACAGTAAGCTTGG+AGG | + | chr8_4:26247015-26247034 | Msa1321060:CDS | 40.0% | |
| TTGTTTGGATACTTAGCACC+AGG | + | chr8_4:26247104-26247123 | Msa1321060:CDS | 40.0% | |
| TGTAGGATGCAAGAGTTTCA+CGG | - | chr8_4:26247144-26247163 | None:intergenic | 40.0% | |
| TTTGCCATAGAGTTGCTTGT+AGG | - | chr8_4:26247161-26247180 | None:intergenic | 40.0% | |
| GCAACTCTATGGCAAAACAT+TGG | + | chr8_4:26247165-26247184 | Msa1321060:CDS | 40.0% | |
| CTATGGCAAAACATTGGAAG+AGG | + | chr8_4:26247171-26247190 | Msa1321060:CDS | 40.0% | |
| CGCTCTTAAATGTGGTAGTA+TGG | + | chr8_4:26247381-26247400 | Msa1321060:CDS | 40.0% | |
| ACCTTTGCGAAATGTTTCTC+GGG | - | chr8_4:26247419-26247438 | None:intergenic | 40.0% | |
| CATCCGTTTACCAACCATTT+CGG | + | chr8_4:26247624-26247643 | Msa1321060:intron | 40.0% | |
| !! | ACTCCGAAATGGTTGGTAAA+CGG | - | chr8_4:26247630-26247649 | None:intergenic | 40.0% |
| TTGAAAACTCGACTCCGAAA+TGG | - | chr8_4:26247641-26247660 | None:intergenic | 40.0% | |
| ! | TTTCGGAGTCGAGTTTTCAA+AGG | + | chr8_4:26247641-26247660 | Msa1321060:intron | 40.0% |
| ATTCACTTCTATGCACCAAC+AGG | + | chr8_4:26248070-26248089 | Msa1321060:intron | 40.0% | |
| CTATGCACCAACAGGTTATA+AGG | + | chr8_4:26248078-26248097 | Msa1321060:intron | 40.0% | |
| TGATGTCATTGGAGATACCT+CGG | + | chr8_4:26248226-26248245 | Msa1321060:CDS | 40.0% | |
| TAACCTCAGAACAGAATGAG+AGG | - | chr8_4:26248327-26248346 | None:intergenic | 40.0% | |
| TCAGTGTCTGTGTTAGGAGA+AGG | - | chr8_4:26245458-26245477 | None:intergenic | 45.0% | |
| AGACGTTCAGTGTCTGTGTT+AGG | - | chr8_4:26245464-26245483 | None:intergenic | 45.0% | |
| CGTCTTCAATCTGAACTCTC+TGG | + | chr8_4:26245994-26246013 | Msa1321060:CDS | 45.0% | |
| GACTTGTGATCCAGCAGAAA+GGG | + | chr8_4:26246487-26246506 | Msa1321060:CDS | 45.0% | |
| GGGATGCATTGAAGGTTAAG+AGG | + | chr8_4:26246525-26246544 | Msa1321060:CDS | 45.0% | |
| GATCAAACAGCTGCAGATTC+TGG | + | chr8_4:26246553-26246572 | Msa1321060:CDS | 45.0% | |
| CTTTGATTGCTCACTTGAGG+AGG | + | chr8_4:26246640-26246659 | Msa1321060:CDS | 45.0% | |
| CTCAGCCACTCACAAAAGTA+AGG | + | chr8_4:26246681-26246700 | Msa1321060:intron | 45.0% | |
| AAGCTTGGAGGTTGCAAAGT+CGG | + | chr8_4:26247027-26247046 | Msa1321060:CDS | 45.0% | |
| ACGGATCTGGAAAACATTCC+TGG | - | chr8_4:26247125-26247144 | None:intergenic | 45.0% | |
| ATGCAAGAGTTTCACGGATC+TGG | - | chr8_4:26247138-26247157 | None:intergenic | 45.0% | |
| GCATCCTACAAGCAACTCTA+TGG | + | chr8_4:26247154-26247173 | Msa1321060:CDS | 45.0% | |
| CCTTTGCGAAATGTTTCTCG+GGG | - | chr8_4:26247418-26247437 | None:intergenic | 45.0% | |
| AAACTCGACTCCGAAATGGT+TGG | - | chr8_4:26247637-26247656 | None:intergenic | 45.0% | |
| GATGTCATTGGAGATACCTC+GGG | + | chr8_4:26248227-26248246 | Msa1321060:CDS | 45.0% | |
| AAAATCCATGTAGTCACCCG+AGG | - | chr8_4:26248246-26248265 | None:intergenic | 45.0% | |
| !! | TTGCTGACTTTGCTAGGGAA+AGG | + | chr8_4:26248266-26248285 | Msa1321060:CDS | 45.0% |
| TTTGCTAGGGAAAGGACCAA+AGG | + | chr8_4:26248274-26248293 | Msa1321060:CDS | 45.0% | |
| TTGCTAGGGAAAGGACCAAA+GGG | + | chr8_4:26248275-26248294 | Msa1321060:CDS | 45.0% | |
| GAACCTCTCATTCTGTTCTG+AGG | + | chr8_4:26248321-26248340 | Msa1321060:three_prime_UTR | 45.0% | |
| !!! | TTTTTTATGTTTTTATTAAT+GGG | + | chr8_4:26245625-26245644 | Msa1321060:intron | 5.0% |
| !!! | TATAAGTTTTTTAATATTTT+TGG | + | chr8_4:26247471-26247490 | Msa1321060:intron | 5.0% |
| GGACTTGTGATCCAGCAGAA+AGG | + | chr8_4:26246486-26246505 | Msa1321060:CDS | 50.0% | |
| ! | TCATTTGATGGCAGTCAGGC+AGG | + | chr8_4:26246604-26246623 | Msa1321060:CDS | 50.0% |
| TGTGAGTGGCTGAGAAACTG+AGG | - | chr8_4:26246675-26246694 | None:intergenic | 50.0% | |
| TGGGCTTAGTAAGCTCCTAC+AGG | + | chr8_4:26246987-26247006 | Msa1321060:CDS | 50.0% | |
| CCCCGAGAAACATTTCGCAA+AGG | + | chr8_4:26247415-26247434 | Msa1321060:CDS | 50.0% | |
| AGGGATTCTATTGTCGGGCT+AGG | + | chr8_4:26248098-26248117 | Msa1321060:CDS | 50.0% | |
| AGATACCTCGGGTGACTACA+TGG | + | chr8_4:26248238-26248257 | Msa1321060:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 26245323 | 26248610 | 26245323 | ID=Msa1321060;Name=Msa1321060 |
| chr8_4 | mRNA | 26245323 | 26248610 | 26245323 | ID=Msa1321060-mRNA-1;Parent=Msa1321060;Name=Msa1321060-mRNA-1;_AED=0.16;_eAED=0.16;_QI=102|1|1|1|1|1|6|306|321 |
| chr8_4 | exon | 26245323 | 26245500 | 26245323 | ID=Msa1321060-mRNA-1:exon:8971;Parent=Msa1321060-mRNA-1 |
| chr8_4 | exon | 26245881 | 26246026 | 26245881 | ID=Msa1321060-mRNA-1:exon:8972;Parent=Msa1321060-mRNA-1 |
| chr8_4 | exon | 26246470 | 26246697 | 26246470 | ID=Msa1321060-mRNA-1:exon:8973;Parent=Msa1321060-mRNA-1 |
| chr8_4 | exon | 26246980 | 26247192 | 26246980 | ID=Msa1321060-mRNA-1:exon:8974;Parent=Msa1321060-mRNA-1 |
| chr8_4 | exon | 26247347 | 26247436 | 26247347 | ID=Msa1321060-mRNA-1:exon:8975;Parent=Msa1321060-mRNA-1 |
| chr8_4 | exon | 26248092 | 26248610 | 26248092 | ID=Msa1321060-mRNA-1:exon:8976;Parent=Msa1321060-mRNA-1 |
| chr8_4 | five_prime_UTR | 26245323 | 26245424 | 26245323 | ID=Msa1321060-mRNA-1:five_prime_utr;Parent=Msa1321060-mRNA-1 |
| chr8_4 | CDS | 26245425 | 26245500 | 26245425 | ID=Msa1321060-mRNA-1:cds;Parent=Msa1321060-mRNA-1 |
| chr8_4 | CDS | 26245881 | 26246026 | 26245881 | ID=Msa1321060-mRNA-1:cds;Parent=Msa1321060-mRNA-1 |
| chr8_4 | CDS | 26246470 | 26246697 | 26246470 | ID=Msa1321060-mRNA-1:cds;Parent=Msa1321060-mRNA-1 |
| chr8_4 | CDS | 26246980 | 26247192 | 26246980 | ID=Msa1321060-mRNA-1:cds;Parent=Msa1321060-mRNA-1 |
| chr8_4 | CDS | 26247347 | 26247436 | 26247347 | ID=Msa1321060-mRNA-1:cds;Parent=Msa1321060-mRNA-1 |
| chr8_4 | CDS | 26248092 | 26248304 | 26248092 | ID=Msa1321060-mRNA-1:cds;Parent=Msa1321060-mRNA-1 |
| chr8_4 | three_prime_UTR | 26248305 | 26248610 | 26248305 | ID=Msa1321060-mRNA-1:three_prime_utr;Parent=Msa1321060-mRNA-1 |
| Gene Sequence |
| Protein sequence |
