Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1281760 | sp|Q9ZVJ6|ANXD4_ARATH | 58.805 | 318 | 124 | 4 | 1 | 312 | 1 | 317 | 5.13e-128 | 370 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1281760 | G7LF83 | 97.771 | 314 | 7 | 0 | 1 | 314 | 1 | 314 | 0.0 | 632 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1186240 | Msa1281760 | 0.830546 | 2.763021e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1281760 | MtrunA17_Chr8g0352581 | 97.771 | 314 | 7 | 0 | 1 | 314 | 1 | 314 | 0.0 | 632 |
| Msa1281760 | MtrunA17_Chr5g0425971 | 40.063 | 317 | 163 | 7 | 4 | 311 | 14 | 312 | 7.86e-63 | 201 |
| Msa1281760 | MtrunA17_Chr8g0352621 | 38.365 | 318 | 169 | 7 | 5 | 313 | 13 | 312 | 7.37e-59 | 191 |
| Msa1281760 | MtrunA17_Chr3g0083901 | 38.170 | 317 | 169 | 8 | 5 | 312 | 14 | 312 | 5.56e-57 | 186 |
| Msa1281760 | MtrunA17_Chr8g0352571 | 36.449 | 321 | 174 | 8 | 4 | 312 | 14 | 316 | 2.21e-56 | 185 |
| Msa1281760 | MtrunA17_Chr2g0293441 | 36.825 | 315 | 174 | 7 | 5 | 311 | 14 | 311 | 9.01e-55 | 181 |
| Msa1281760 | MtrunA17_Chr3g0083921 | 36.909 | 317 | 173 | 8 | 5 | 312 | 14 | 312 | 3.73e-54 | 179 |
| Msa1281760 | MtrunA17_Chr8g0352611 | 37.421 | 318 | 171 | 8 | 4 | 312 | 13 | 311 | 2.28e-51 | 172 |
| Msa1281760 | MtrunA17_Chr8g0382281 | 36.943 | 314 | 171 | 7 | 8 | 312 | 18 | 313 | 6.58e-49 | 165 |
| Msa1281760 | MtrunA17_Chr8g0352591 | 34.385 | 317 | 170 | 8 | 5 | 312 | 14 | 301 | 3.34e-45 | 155 |
| Msa1281760 | MtrunA17_Chr6g0479411 | 31.068 | 309 | 190 | 7 | 10 | 311 | 47 | 339 | 3.52e-36 | 133 |
| Msa1281760 | MtrunA17_Chr8g0393281 | 30.323 | 310 | 191 | 6 | 10 | 311 | 20 | 312 | 5.98e-35 | 129 |
| Msa1281760 | MtrunA17_Chr1g0162071 | 29.393 | 313 | 190 | 7 | 10 | 311 | 20 | 312 | 1.63e-34 | 127 |
| Msa1281760 | MtrunA17_Chr6g0479421 | 31.068 | 309 | 190 | 6 | 10 | 311 | 20 | 312 | 2.86e-33 | 124 |
| Msa1281760 | MtrunA17_Chr6g0479391 | 29.450 | 309 | 195 | 6 | 10 | 311 | 20 | 312 | 1.12e-31 | 120 |
| Msa1281760 | MtrunA17_Chr1g0210981 | 29.126 | 309 | 196 | 6 | 10 | 311 | 20 | 312 | 3.64e-29 | 113 |
| Msa1281760 | MtrunA17_Chr6g0461141 | 26.667 | 300 | 197 | 7 | 24 | 312 | 23 | 310 | 5.61e-25 | 102 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1281760 | AT2G38750.1 | 58.805 | 318 | 124 | 4 | 1 | 312 | 1 | 317 | 5.22e-129 | 370 |
| Msa1281760 | AT2G38750.2 | 59.333 | 300 | 118 | 3 | 16 | 312 | 2 | 300 | 8.86e-125 | 359 |
| Msa1281760 | AT1G35720.1 | 39.062 | 320 | 167 | 8 | 2 | 311 | 12 | 313 | 4.93e-62 | 200 |
| Msa1281760 | AT5G12380.1 | 37.342 | 316 | 171 | 7 | 5 | 311 | 14 | 311 | 9.37e-58 | 189 |
| Msa1281760 | AT5G10230.1 | 39.873 | 316 | 163 | 8 | 5 | 311 | 15 | 312 | 2.77e-57 | 187 |
| Msa1281760 | AT5G65020.1 | 38.019 | 313 | 168 | 6 | 8 | 311 | 18 | 313 | 3.30e-55 | 182 |
| Msa1281760 | AT5G10220.1 | 39.308 | 318 | 164 | 10 | 5 | 311 | 15 | 314 | 4.15e-54 | 179 |
| Msa1281760 | AT5G65020.2 | 37.134 | 307 | 165 | 7 | 15 | 311 | 10 | 298 | 2.64e-52 | 174 |
| Msa1281760 | AT2G38760.1 | 36.728 | 324 | 172 | 9 | 5 | 313 | 15 | 320 | 3.16e-51 | 172 |
| Msa1281760 | AT1G68090.1 | 30.032 | 313 | 193 | 7 | 8 | 311 | 18 | 313 | 3.73e-38 | 137 |
| Msa1281760 | AT1G68090.2 | 30.612 | 245 | 148 | 6 | 10 | 246 | 20 | 250 | 3.08e-27 | 107 |
Find 69 sgRNAs with CRISPR-Local
Find 189 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTTCATCATCCTCATTAAT+TGG | 0.192814 | 8_3:-21505917 | None:intergenic |
| TGATAGCAGTATTGGGAAAA+TGG | 0.220899 | 8_3:+21503317 | Msa1281760:CDS |
| CTTGATTGAATGCCATATTC+TGG | 0.221716 | 8_3:-21503120 | None:intergenic |
| ATGAAATTGAGCCTTTCTTT+AGG | 0.253678 | 8_3:-21504911 | None:intergenic |
| GCTGAGTATAATAACTTATA+TGG | 0.281621 | 8_3:+21506423 | Msa1281760:CDS |
| GATCATTCCACCTCTGAAAT+TGG | 0.285648 | 8_3:-21503405 | None:intergenic |
| CTTTGGAGAGAGAATCTTAT+AGG | 0.296404 | 8_3:+21503344 | Msa1281760:CDS |
| TGAAATTGAGCCTTTCTTTA+GGG | 0.301910 | 8_3:-21504910 | None:intergenic |
| AAGCACTATAAAGAGATTTC+TGG | 0.312193 | 8_3:+21505989 | Msa1281760:CDS |
| GCTAGGATCTTAATGACTTA+AGG | 0.319355 | 8_3:+21506117 | Msa1281760:intron |
| AATGGCATTGGAAAGTGTTT+TGG | 0.322849 | 8_3:-21505876 | None:intergenic |
| CTTTGTTCCTTCATATCTAT+AGG | 0.341085 | 8_3:-21505825 | None:intergenic |
| ATCAGAATGCAGTGGTGCTT+TGG | 0.364820 | 8_3:+21504844 | Msa1281760:intron |
| ATGAGGATGATGAAGTAATA+AGG | 0.366290 | 8_3:+21505924 | Msa1281760:CDS |
| AAGATCTTCAGAGGAACTAT+TGG | 0.377291 | 8_3:+21504962 | Msa1281760:CDS |
| ATTGGGAAAATGGGATCCTT+TGG | 0.385637 | 8_3:+21503327 | Msa1281760:CDS |
| TGCTTTGGAGCATGCACCCT+TGG | 0.391368 | 8_3:+21504859 | Msa1281760:CDS |
| CATTGATATGAAGGAGATAA+AGG | 0.391945 | 8_3:+21506401 | Msa1281760:CDS |
| TGATGAAGTAATAAGGATAT+TGG | 0.398287 | 8_3:+21505931 | Msa1281760:CDS |
| TTAATTAAAGAACAAACCTT+TGG | 0.410002 | 8_3:+21506540 | Msa1281760:three_prime_UTR |
| GAAATCATTGATAGCAGTAT+TGG | 0.428113 | 8_3:+21503309 | Msa1281760:CDS |
| TTGAGCATTCTTAATGGCAT+TGG | 0.429639 | 8_3:-21505888 | None:intergenic |
| GCTTTAACTCAAGCTTTCTC+AGG | 0.434534 | 8_3:+21503151 | Msa1281760:CDS |
| TTGATTGAATGCCATATTCT+GGG | 0.439190 | 8_3:-21503119 | None:intergenic |
| GTTTCGTTTATGAAATAAAG+AGG | 0.449646 | 8_3:+21506729 | Msa1281760:three_prime_UTR |
| TTACCTTTCTATCATTGCCA+TGG | 0.452976 | 8_3:-21505049 | None:intergenic |
| TTAAATTCATTAACAATACA+TGG | 0.456504 | 8_3:-21506604 | None:intergenic |
| AAATCATTGATAGCAGTATT+GGG | 0.456697 | 8_3:+21503310 | Msa1281760:CDS |
| CAGAGGAACTATTGGGAGCT+AGG | 0.463248 | 8_3:+21504970 | Msa1281760:CDS |
| AAGAAAGGCTCAATTTCATA+TGG | 0.467362 | 8_3:+21504915 | Msa1281760:CDS |
| GATAGCAGTATTGGGAAAAT+GGG | 0.474695 | 8_3:+21503318 | Msa1281760:CDS |
| GCAATTAAATATGATGAGTA+GGG | 0.483594 | 8_3:-21503064 | None:intergenic |
| AAAATTGAAGAGACTGCTAA+AGG | 0.486337 | 8_3:+21506462 | Msa1281760:CDS |
| AGATGCAACATCTTCTTCAA+TGG | 0.491454 | 8_3:-21505021 | None:intergenic |
| AGATCTTCAGAGGAACTATT+GGG | 0.492249 | 8_3:+21504963 | Msa1281760:CDS |
| CATCCATGGCAATGATAGAA+AGG | 0.496277 | 8_3:+21505046 | Msa1281760:CDS |
| TAGAGCTGACATTGATATGA+AGG | 0.504202 | 8_3:+21506392 | Msa1281760:CDS |
| AGATGCACGTTTAGCAAAAG+AGG | 0.507874 | 8_3:+21504887 | Msa1281760:CDS |
| TGGAATGGTCAAAGAGAGAA+TGG | 0.508195 | 8_3:-21505001 | None:intergenic |
| GCAAAAGAGGCCCTAAAGAA+AGG | 0.511238 | 8_3:+21504900 | Msa1281760:CDS |
| TTAGCCTCGTCTAGCAATCA+AGG | 0.512644 | 8_3:-21506508 | None:intergenic |
| GCTTTGGAGCATGCACCCTT+GGG | 0.524661 | 8_3:+21504860 | Msa1281760:CDS |
| AAATTGAAGAGACTGCTAAA+GGG | 0.526572 | 8_3:+21506463 | Msa1281760:CDS |
| GTGAGTGCCTATAGATATGA+AGG | 0.526990 | 8_3:+21505818 | Msa1281760:CDS |
| CAACATCTTCTTCAATGGAA+TGG | 0.529527 | 8_3:-21505016 | None:intergenic |
| AGCAATTAAATATGATGAGT+AGG | 0.529958 | 8_3:-21503065 | None:intergenic |
| GGAACTATTGGGAGCTAGGA+AGG | 0.530013 | 8_3:+21504974 | Msa1281760:CDS |
| ATCTTTCAAAACATTACCAA+AGG | 0.537175 | 8_3:-21506556 | None:intergenic |
| TAAATTCATTAACAATACAT+GGG | 0.564506 | 8_3:-21506603 | None:intergenic |
| TCAAAAGAAGCCAATTAATG+AGG | 0.568367 | 8_3:+21505907 | Msa1281760:CDS |
| AAACGTGCATCTCTTTCCCA+AGG | 0.568596 | 8_3:-21504876 | None:intergenic |
| TTGAATGCCATATTCTGGGA+AGG | 0.575664 | 8_3:-21503115 | None:intergenic |
| GATGTTGCATCTCACATCCA+TGG | 0.585008 | 8_3:+21505032 | Msa1281760:CDS |
| CTATAAGATTCTCTCTCCAA+AGG | 0.601429 | 8_3:-21503343 | None:intergenic |
| TTCTGGCAAGAATCTTGAAG+AGG | 0.605202 | 8_3:+21506006 | Msa1281760:CDS |
| GACTGCTAAAGGGAATTACA+AGG | 0.619788 | 8_3:+21506473 | Msa1281760:CDS |
| ACCTTGCTGAAATATACTTG+AGG | 0.621140 | 8_3:-21506170 | None:intergenic |
| TAAAATAAATCAGAATGCAG+TGG | 0.621993 | 8_3:+21504836 | Msa1281760:intron |
| ATGAACGCCAATTTCAGAGG+TGG | 0.625524 | 8_3:+21503398 | Msa1281760:CDS |
| ATCATGAACGCCAATTTCAG+AGG | 0.629826 | 8_3:+21503395 | Msa1281760:CDS |
| TGCAGCATTGAAAATTGATG+TGG | 0.633610 | 8_3:+21506329 | Msa1281760:CDS |
| AGATGACACTGCAAAATCAG+AGG | 0.643803 | 8_3:+21505853 | Msa1281760:CDS |
| TCCTCAAGTATATTTCAGCA+AGG | 0.646261 | 8_3:+21506169 | Msa1281760:CDS |
| TGCATGCACAAGATCTTCAG+AGG | 0.650638 | 8_3:+21504953 | Msa1281760:CDS |
| CTAACCTTGATTGCTAGACG+AGG | 0.653000 | 8_3:+21506504 | Msa1281760:CDS |
| CTATAGATATGAAGGAACAA+AGG | 0.657119 | 8_3:+21505826 | Msa1281760:CDS |
| CAATTAAATATGATGAGTAG+GGG | 0.664709 | 8_3:-21503063 | None:intergenic |
| AACGTGCATCTCTTTCCCAA+GGG | 0.668764 | 8_3:-21504875 | None:intergenic |
| GCGGCAATAATAACAACACA+AGG | 0.697919 | 8_3:-21506662 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAATATATTCTTTTTGTTT+TGG | - | chr8_3:21503701-21503720 | None:intergenic | 10.0% |
| !!! | GATTATTTTTTTTAAGTTTA+AGG | - | chr8_3:21503974-21503993 | None:intergenic | 10.0% |
| !! | AATTTCATTAAAATATATGA+TGG | - | chr8_3:21504352-21504371 | None:intergenic | 10.0% |
| !!! | AAAAATTCTAATTTTGTTTT+TGG | - | chr8_3:21504409-21504428 | None:intergenic | 10.0% |
| !!! | AAAAATTCTAATTTGTTTTT+AGG | + | chr8_3:21504504-21504523 | Msa1281760:intron | 10.0% |
| !!! | AATTTTCTTCTTAATTATAA+GGG | - | chr8_3:21504735-21504754 | None:intergenic | 10.0% |
| !!! | AATTTTGATTAAACATATGA+AGG | + | chr8_3:21503615-21503634 | Msa1281760:intron | 15.0% |
| !!! | TTTTAAGAATTCTTTTTGTT+TGG | - | chr8_3:21503671-21503690 | None:intergenic | 15.0% |
| !!! | ATGACTTTTACAAAATAAAA+AGG | + | chr8_3:21503719-21503738 | Msa1281760:intron | 15.0% |
| !!! | AATAAAAAGGATATGTTTTT+TGG | + | chr8_3:21503732-21503751 | Msa1281760:intron | 15.0% |
| !!! | TGTTCAAAAAAATTTAAGAT+AGG | - | chr8_3:21503777-21503796 | None:intergenic | 15.0% |
| !! | ATTAGAGTTTAATAAGTAAA+TGG | + | chr8_3:21504207-21504226 | Msa1281760:intron | 15.0% |
| !! | ATCAAATGTTGATATATTTA+GGG | - | chr8_3:21504236-21504255 | None:intergenic | 15.0% |
| !! | AATCAAATGTTGATATATTT+AGG | - | chr8_3:21504237-21504256 | None:intergenic | 15.0% |
| !!! | AAAAACCTTAGAAATATTTT+AGG | - | chr8_3:21504268-21504287 | None:intergenic | 15.0% |
| !!! | TAAAATATTTCTAAGGTTTT+TGG | + | chr8_3:21504267-21504286 | Msa1281760:intron | 15.0% |
| !! | TTAATGAAATTTACTAGAAA+TGG | + | chr8_3:21504361-21504380 | Msa1281760:intron | 15.0% |
| !! | TAATGAAATTTACTAGAAAT+GGG | + | chr8_3:21504362-21504381 | Msa1281760:intron | 15.0% |
| !!! | TCATATATGAAAAATTTTGA+AGG | + | chr8_3:21504620-21504639 | Msa1281760:intron | 15.0% |
| !! | ATCAAATATTGGTATATTTA+AGG | + | chr8_3:21504678-21504697 | Msa1281760:intron | 15.0% |
| !! | TCAAATATTGGTATATTTAA+GGG | + | chr8_3:21504679-21504698 | Msa1281760:intron | 15.0% |
| !! | ATTATAAGGGTTAATTATAA+GGG | - | chr8_3:21504722-21504741 | None:intergenic | 15.0% |
| !! | AATTATAAGGGTTAATTATA+AGG | - | chr8_3:21504723-21504742 | None:intergenic | 15.0% |
| !!! | GAATTTTCTTCTTAATTATA+AGG | - | chr8_3:21504736-21504755 | None:intergenic | 15.0% |
| !! | ATTGTTACATGAAAAAAAAA+TGG | - | chr8_3:21505442-21505461 | None:intergenic | 15.0% |
| !!! | TTTTTTTTCATGTAACAATA+TGG | + | chr8_3:21505443-21505462 | Msa1281760:intron | 15.0% |
| !!! | TATTTTCTATATACACTTAA+TGG | - | chr8_3:21505613-21505632 | None:intergenic | 15.0% |
| !! | GTGAATTAGTATTATTTATA+TGG | + | chr8_3:21505709-21505728 | Msa1281760:intron | 15.0% |
| !!! | TGTTTTTATTTTTTGTACAT+AGG | + | chr8_3:21506299-21506318 | Msa1281760:intron | 15.0% |
| !! | TAAATTCATTAACAATACAT+GGG | - | chr8_3:21506606-21506625 | None:intergenic | 15.0% |
| !! | TTAAATTCATTAACAATACA+TGG | - | chr8_3:21506607-21506626 | None:intergenic | 15.0% |
| !!! | GAATTAATGATGTAATTTTC+AGG | + | chr8_3:21503271-21503290 | Msa1281760:intron | 20.0% |
| !!! | TCTTTTAATAGAAATGTTGA+AGG | + | chr8_3:21503544-21503563 | Msa1281760:intron | 20.0% |
| !!! | TGTTTTTTGGTAGAAAAAAA+AGG | + | chr8_3:21503745-21503764 | Msa1281760:intron | 20.0% |
| !!! | AGCTAAGAACATTTTTTTTA+GGG | - | chr8_3:21504069-21504088 | None:intergenic | 20.0% |
| !!! | TAGCTAAGAACATTTTTTTT+AGG | - | chr8_3:21504070-21504089 | None:intergenic | 20.0% |
| !! | CAAGTATTAATTATGTTAAC+AGG | - | chr8_3:21504102-21504121 | None:intergenic | 20.0% |
| !! | TCAAATGTTGATATATTTAG+GGG | - | chr8_3:21504235-21504254 | None:intergenic | 20.0% |
| !!! | TTTCATAGATGGAAAATTTT+GGG | - | chr8_3:21504296-21504315 | None:intergenic | 20.0% |
| !!! | ATTTCATAGATGGAAAATTT+TGG | - | chr8_3:21504297-21504316 | None:intergenic | 20.0% |
| !! | CATTAAAAACTATGAATGTT+AGG | + | chr8_3:21504567-21504586 | Msa1281760:intron | 20.0% |
| !!! | TAACATATTCTTTAGACTTT+TGG | - | chr8_3:21504647-21504666 | None:intergenic | 20.0% |
| !! | AAAAGTCTAAAGAATATGTT+AGG | + | chr8_3:21504646-21504665 | Msa1281760:intron | 20.0% |
| !! | AAAGTCTAAAGAATATGTTA+GGG | + | chr8_3:21504647-21504666 | Msa1281760:intron | 20.0% |
| !! | ATAAGGGTTAAATAAGTAAA+TGG | - | chr8_3:21504706-21504725 | None:intergenic | 20.0% |
| !!! | GAAAATTATATTTTGTTGTG+TGG | + | chr8_3:21504788-21504807 | Msa1281760:intron | 20.0% |
| !!! | TTTTAATCTATCTAATTCCA+TGG | + | chr8_3:21505119-21505138 | Msa1281760:intron | 20.0% |
| !!! | AATTCCATGGTTTTAAATTA+TGG | + | chr8_3:21505132-21505151 | Msa1281760:intron | 20.0% |
| !! | ATTAACCCAAAAATTAATGT+GGG | - | chr8_3:21505316-21505335 | None:intergenic | 20.0% |
| !!! | ACATTAATTTTTGGGTTAAT+CGG | + | chr8_3:21505316-21505335 | Msa1281760:intron | 20.0% |
| !!! | CTAGACTAAAAATTGATTTT+TGG | + | chr8_3:21505340-21505359 | Msa1281760:intron | 20.0% |
| !!! | GTTTCTCAAAACATTTTTTT+TGG | - | chr8_3:21505498-21505517 | None:intergenic | 20.0% |
| !! | ATATTTACATATCATTGTCT+AGG | - | chr8_3:21505642-21505661 | None:intergenic | 20.0% |
| !! | TTATGAATGTTAGATTTCAA+AGG | + | chr8_3:21505680-21505699 | Msa1281760:intron | 20.0% |
| !!! | TATTTTTTGTACATAGGTTT+TGG | + | chr8_3:21506305-21506324 | Msa1281760:intron | 20.0% |
| !! | TTAATTAAAGAACAAACCTT+TGG | + | chr8_3:21506540-21506559 | Msa1281760:three_prime_UTR | 20.0% |
| ! | CAATTAAATATGATGAGTAG+GGG | - | chr8_3:21503066-21503085 | None:intergenic | 25.0% |
| ! | GCAATTAAATATGATGAGTA+GGG | - | chr8_3:21503067-21503086 | None:intergenic | 25.0% |
| ! | AGCAATTAAATATGATGAGT+AGG | - | chr8_3:21503068-21503087 | None:intergenic | 25.0% |
| ! | TTCATCAAATATCATCAACT+GGG | - | chr8_3:21503254-21503273 | None:intergenic | 25.0% |
| ! | ATTCATCAAATATCATCAAC+TGG | - | chr8_3:21503255-21503274 | None:intergenic | 25.0% |
| !! | AAATCATTGATAGCAGTATT+GGG | + | chr8_3:21503310-21503329 | Msa1281760:CDS | 25.0% |
| !!! | AATTGAGAGATTGATTTTCA+CGG | + | chr8_3:21503504-21503523 | Msa1281760:intron | 25.0% |
| ! | AAAAGAAAAACATCATCATC+TGG | - | chr8_3:21503530-21503549 | None:intergenic | 25.0% |
| !!! | TGTAAAATTTGCTTTTGCAT+AGG | - | chr8_3:21503895-21503914 | None:intergenic | 25.0% |
| ! | AAAATGTATTGCAATATGAC+AGG | + | chr8_3:21504156-21504175 | Msa1281760:intron | 25.0% |
| ! | CAAATGTTGATATATTTAGG+GGG | - | chr8_3:21504234-21504253 | None:intergenic | 25.0% |
| !!! | AACCTTAGAAATATTTTAGG+AGG | - | chr8_3:21504265-21504284 | None:intergenic | 25.0% |
| !! | TTCATAGATGGAAAATTTTG+GGG | - | chr8_3:21504295-21504314 | None:intergenic | 25.0% |
| !! | CATGAGTTGACTAAAAATTA+GGG | - | chr8_3:21504324-21504343 | None:intergenic | 25.0% |
| !! | ACATGAGTTGACTAAAAATT+AGG | - | chr8_3:21504325-21504344 | None:intergenic | 25.0% |
| ! | AAGTCTAAAGAATATGTTAG+GGG | + | chr8_3:21504648-21504667 | Msa1281760:intron | 25.0% |
| !! | TAATTTTCCAACTTGTGATT+TGG | - | chr8_3:21504776-21504795 | None:intergenic | 25.0% |
| ! | TAAAATAAATCAGAATGCAG+TGG | + | chr8_3:21504836-21504855 | Msa1281760:intron | 25.0% |
| ! | GATTAACCCAAAAATTAATG+TGG | - | chr8_3:21505317-21505336 | None:intergenic | 25.0% |
| !!! | AAAAATGTTTTGAGAAACGT+TGG | + | chr8_3:21505500-21505519 | Msa1281760:intron | 25.0% |
| ! | TCTATATACACTTAATGGTA+GGG | - | chr8_3:21505608-21505627 | None:intergenic | 25.0% |
| ! | TTCTATATACACTTAATGGT+AGG | - | chr8_3:21505609-21505628 | None:intergenic | 25.0% |
| !! | TGTTAGATTTCAAAGGTTTT+AGG | + | chr8_3:21505687-21505706 | Msa1281760:intron | 25.0% |
| ! | TGATGAAGTAATAAGGATAT+TGG | + | chr8_3:21505931-21505950 | Msa1281760:CDS | 25.0% |
| ! | TGAAAATTCAACTACTTAAG+TGG | + | chr8_3:21506210-21506229 | Msa1281760:intron | 25.0% |
| ! | ATACAAGAAAAAGAGAAGAA+AGG | - | chr8_3:21506249-21506268 | None:intergenic | 25.0% |
| ! | GCTGAGTATAATAACTTATA+TGG | + | chr8_3:21506423-21506442 | Msa1281760:CDS | 25.0% |
| ! | ATCTTTCAAAACATTACCAA+AGG | - | chr8_3:21506559-21506578 | None:intergenic | 25.0% |
| !!! | CTTTTATTTTTTCTCTTTCG+CGG | - | chr8_3:21506684-21506703 | None:intergenic | 25.0% |
| ! | GTTTCGTTTATGAAATAAAG+AGG | + | chr8_3:21506729-21506748 | Msa1281760:three_prime_UTR | 25.0% |
| TTGATTGAATGCCATATTCT+GGG | - | chr8_3:21503122-21503141 | None:intergenic | 30.0% | |
| !! | ATGATGTAATTTTCAGGACA+TGG | + | chr8_3:21503277-21503296 | Msa1281760:intron | 30.0% |
| !! | TGATGTAATTTTCAGGACAT+GGG | + | chr8_3:21503278-21503297 | Msa1281760:intron | 30.0% |
| ! | GAAATCATTGATAGCAGTAT+TGG | + | chr8_3:21503309-21503328 | Msa1281760:CDS | 30.0% |
| ! | GTCCTCCTAAAATATTTCTA+AGG | + | chr8_3:21504260-21504279 | Msa1281760:intron | 30.0% |
| ! | TCATAGATGGAAAATTTTGG+GGG | - | chr8_3:21504294-21504313 | None:intergenic | 30.0% |
| TTAGGGACTAATTTCATAGA+TGG | - | chr8_3:21504307-21504326 | None:intergenic | 30.0% | |
| ! | CATGAGTTGACTAAAAAGTA+GGG | + | chr8_3:21504590-21504609 | Msa1281760:intron | 30.0% |
| AGTCTAAAGAATATGTTAGG+GGG | + | chr8_3:21504649-21504668 | Msa1281760:intron | 30.0% | |
| GAATAAACCAAATCACAAGT+TGG | + | chr8_3:21504766-21504785 | Msa1281760:intron | 30.0% | |
| ATGAAAAAGTCAACACACAA+GGG | - | chr8_3:21504815-21504834 | None:intergenic | 30.0% | |
| TGAAATTGAGCCTTTCTTTA+GGG | - | chr8_3:21504913-21504932 | None:intergenic | 30.0% | |
| ATGAAATTGAGCCTTTCTTT+AGG | - | chr8_3:21504914-21504933 | None:intergenic | 30.0% | |
| AAGAAAGGCTCAATTTCATA+TGG | + | chr8_3:21504915-21504934 | Msa1281760:CDS | 30.0% | |
| ! | ACGACCATAATTTAAAACCA+TGG | - | chr8_3:21505139-21505158 | None:intergenic | 30.0% |
| !!! | ATGGTTTTAAATTATGGTCG+TGG | + | chr8_3:21505138-21505157 | Msa1281760:intron | 30.0% |
| !!! | CAAGTGTTTTAAGAAATGTG+AGG | - | chr8_3:21505380-21505399 | None:intergenic | 30.0% |
| !! | CTTAAAACACTTGATTTGTC+CGG | + | chr8_3:21505387-21505406 | Msa1281760:intron | 30.0% |
| CTCAATCCATGCTAAAATAA+AGG | + | chr8_3:21505542-21505561 | Msa1281760:intron | 30.0% | |
| !!! | ATTTGGCCTTTATTTTAGCA+TGG | - | chr8_3:21505551-21505570 | None:intergenic | 30.0% |
| ATGCTAAAATAAAGGCCAAA+TGG | + | chr8_3:21505550-21505569 | Msa1281760:intron | 30.0% | |
| TGCTAAAATAAAGGCCAAAT+GGG | + | chr8_3:21505551-21505570 | Msa1281760:intron | 30.0% | |
| TACATATCATTGTCTAGGTT+TGG | - | chr8_3:21505637-21505656 | None:intergenic | 30.0% | |
| CTTTGTTCCTTCATATCTAT+AGG | - | chr8_3:21505828-21505847 | None:intergenic | 30.0% | |
| CTATAGATATGAAGGAACAA+AGG | + | chr8_3:21505826-21505845 | Msa1281760:CDS | 30.0% | |
| ! | CTTCTTTTGAGCATTCTTAA+TGG | - | chr8_3:21505897-21505916 | None:intergenic | 30.0% |
| TCAAAAGAAGCCAATTAATG+AGG | + | chr8_3:21505907-21505926 | Msa1281760:CDS | 30.0% | |
| ACTTCATCATCCTCATTAAT+TGG | - | chr8_3:21505920-21505939 | None:intergenic | 30.0% | |
| ATGAGGATGATGAAGTAATA+AGG | + | chr8_3:21505924-21505943 | Msa1281760:CDS | 30.0% | |
| AAGCACTATAAAGAGATTTC+TGG | + | chr8_3:21505989-21506008 | Msa1281760:CDS | 30.0% | |
| CATTGATATGAAGGAGATAA+AGG | + | chr8_3:21506401-21506420 | Msa1281760:CDS | 30.0% | |
| AAAATTGAAGAGACTGCTAA+AGG | + | chr8_3:21506462-21506481 | Msa1281760:CDS | 30.0% | |
| AAATTGAAGAGACTGCTAAA+GGG | + | chr8_3:21506463-21506482 | Msa1281760:CDS | 30.0% | |
| TCAAAAACCTTCCCAGAATA+TGG | + | chr8_3:21503108-21503127 | Msa1281760:exon | 35.0% | |
| CTTGATTGAATGCCATATTC+TGG | - | chr8_3:21503123-21503142 | None:intergenic | 35.0% | |
| !! | GATGTAATTTTCAGGACATG+GGG | + | chr8_3:21503279-21503298 | Msa1281760:intron | 35.0% |
| ! | TGATAGCAGTATTGGGAAAA+TGG | + | chr8_3:21503317-21503336 | Msa1281760:CDS | 35.0% |
| ! | GATAGCAGTATTGGGAAAAT+GGG | + | chr8_3:21503318-21503337 | Msa1281760:CDS | 35.0% |
| CTATAAGATTCTCTCTCCAA+AGG | - | chr8_3:21503346-21503365 | None:intergenic | 35.0% | |
| ! | CTTTGGAGAGAGAATCTTAT+AGG | + | chr8_3:21503344-21503363 | Msa1281760:CDS | 35.0% |
| ! | ACATGAGTTTGTGCGTTTTA+AGG | + | chr8_3:21503447-21503466 | Msa1281760:CDS | 35.0% |
| ! | GCATGAGTTGACTAAAAAGT+AGG | + | chr8_3:21504589-21504608 | Msa1281760:intron | 35.0% |
| GGGGGACTAAAATCAAATAT+TGG | + | chr8_3:21504667-21504686 | Msa1281760:intron | 35.0% | |
| CATGAAAAAGTCAACACACA+AGG | - | chr8_3:21504816-21504835 | None:intergenic | 35.0% | |
| AAGATCTTCAGAGGAACTAT+TGG | + | chr8_3:21504962-21504981 | Msa1281760:CDS | 35.0% | |
| AGATCTTCAGAGGAACTATT+GGG | + | chr8_3:21504963-21504982 | Msa1281760:CDS | 35.0% | |
| CAACATCTTCTTCAATGGAA+TGG | - | chr8_3:21505019-21505038 | None:intergenic | 35.0% | |
| AGATGCAACATCTTCTTCAA+TGG | - | chr8_3:21505024-21505043 | None:intergenic | 35.0% | |
| TTACCTTTCTATCATTGCCA+TGG | - | chr8_3:21505052-21505071 | None:intergenic | 35.0% | |
| !!! | CGCTGTAGTTTTTGATTTTG+CGG | + | chr8_3:21505164-21505183 | Msa1281760:intron | 35.0% |
| ACCCAAAAATTAATGTGGGT+CGG | - | chr8_3:21505312-21505331 | None:intergenic | 35.0% | |
| CACATCTAGATTGTGTAATC+CGG | - | chr8_3:21505409-21505428 | None:intergenic | 35.0% | |
| ACCTAATATGACATCCCATT+TGG | - | chr8_3:21505568-21505587 | None:intergenic | 35.0% | |
| AATGGGATGTCATATTAGGT+TGG | + | chr8_3:21505568-21505587 | Msa1281760:intron | 35.0% | |
| ! | GAGCTGTTTCAAAAAGCAAT+AGG | - | chr8_3:21505786-21505805 | None:intergenic | 35.0% |
| !!! | TTGCTTTTTGAAACAGCTCT+TGG | + | chr8_3:21505787-21505806 | Msa1281760:intron | 35.0% |
| !!! | AATGGCATTGGAAAGTGTTT+TGG | - | chr8_3:21505879-21505898 | None:intergenic | 35.0% |
| TTGAGCATTCTTAATGGCAT+TGG | - | chr8_3:21505891-21505910 | None:intergenic | 35.0% | |
| ! | ATGTCTTTGTACCTTTTGCT+AGG | + | chr8_3:21506100-21506119 | Msa1281760:intron | 35.0% |
| GTCATTAAGATCCTAGCAAA+AGG | - | chr8_3:21506114-21506133 | None:intergenic | 35.0% | |
| GCTAGGATCTTAATGACTTA+AGG | + | chr8_3:21506117-21506136 | Msa1281760:intron | 35.0% | |
| TCCTCAAGTATATTTCAGCA+AGG | + | chr8_3:21506169-21506188 | Msa1281760:CDS | 35.0% | |
| ACCTTGCTGAAATATACTTG+AGG | - | chr8_3:21506173-21506192 | None:intergenic | 35.0% | |
| ! | TGCAGCATTGAAAATTGATG+TGG | + | chr8_3:21506329-21506348 | Msa1281760:CDS | 35.0% |
| TAGAGCTGACATTGATATGA+AGG | + | chr8_3:21506392-21506411 | Msa1281760:CDS | 35.0% | |
| ! | TTGAATGCCATATTCTGGGA+AGG | - | chr8_3:21503118-21503137 | None:intergenic | 40.0% |
| GCTTTAACTCAAGCTTTCTC+AGG | + | chr8_3:21503151-21503170 | Msa1281760:CDS | 40.0% | |
| ATTGGGAAAATGGGATCCTT+TGG | + | chr8_3:21503327-21503346 | Msa1281760:CDS | 40.0% | |
| ATCATGAACGCCAATTTCAG+AGG | + | chr8_3:21503395-21503414 | Msa1281760:CDS | 40.0% | |
| !! | GATCATTCCACCTCTGAAAT+TGG | - | chr8_3:21503408-21503427 | None:intergenic | 40.0% |
| AGATGCACGTTTAGCAAAAG+AGG | + | chr8_3:21504887-21504906 | Msa1281760:CDS | 40.0% | |
| TGGAATGGTCAAAGAGAGAA+TGG | - | chr8_3:21505004-21505023 | None:intergenic | 40.0% | |
| CATCCATGGCAATGATAGAA+AGG | + | chr8_3:21505046-21505065 | Msa1281760:CDS | 40.0% | |
| CCCAAAAATTAATGTGGGTC+GGG | - | chr8_3:21505311-21505330 | None:intergenic | 40.0% | |
| ! | CCCGACCCACATTAATTTTT+GGG | + | chr8_3:21505308-21505327 | Msa1281760:intron | 40.0% |
| GCCAAATGGGATGTCATATT+AGG | + | chr8_3:21505564-21505583 | Msa1281760:intron | 40.0% | |
| GTGAGTGCCTATAGATATGA+AGG | + | chr8_3:21505818-21505837 | Msa1281760:CDS | 40.0% | |
| AGATGACACTGCAAAATCAG+AGG | + | chr8_3:21505853-21505872 | Msa1281760:CDS | 40.0% | |
| TTCTGGCAAGAATCTTGAAG+AGG | + | chr8_3:21506006-21506025 | Msa1281760:CDS | 40.0% | |
| ! | GCAAAAGGTACAAAGACATG+AGG | - | chr8_3:21506099-21506118 | None:intergenic | 40.0% |
| ! | GCAGTCTCTTCAATTTTCTG+AGG | - | chr8_3:21506459-21506478 | None:intergenic | 40.0% |
| GACTGCTAAAGGGAATTACA+AGG | + | chr8_3:21506473-21506492 | Msa1281760:CDS | 40.0% | |
| GCGGCAATAATAACAACACA+AGG | - | chr8_3:21506665-21506684 | None:intergenic | 40.0% | |
| !! | GTAATTTTCAGGACATGGGG+TGG | + | chr8_3:21503282-21503301 | Msa1281760:intron | 45.0% |
| ATGAACGCCAATTTCAGAGG+TGG | + | chr8_3:21503398-21503417 | Msa1281760:CDS | 45.0% | |
| ATCAGAATGCAGTGGTGCTT+TGG | + | chr8_3:21504844-21504863 | Msa1281760:intron | 45.0% | |
| AACGTGCATCTCTTTCCCAA+GGG | - | chr8_3:21504878-21504897 | None:intergenic | 45.0% | |
| AAACGTGCATCTCTTTCCCA+AGG | - | chr8_3:21504879-21504898 | None:intergenic | 45.0% | |
| GCAAAAGAGGCCCTAAAGAA+AGG | + | chr8_3:21504900-21504919 | Msa1281760:CDS | 45.0% | |
| TGCATGCACAAGATCTTCAG+AGG | + | chr8_3:21504953-21504972 | Msa1281760:CDS | 45.0% | |
| GATGTTGCATCTCACATCCA+TGG | + | chr8_3:21505032-21505051 | Msa1281760:CDS | 45.0% | |
| ! | GCCCGACCCACATTAATTTT+TGG | + | chr8_3:21505307-21505326 | Msa1281760:intron | 45.0% |
| CTAACCTTGATTGCTAGACG+AGG | + | chr8_3:21506504-21506523 | Msa1281760:CDS | 45.0% | |
| TTAGCCTCGTCTAGCAATCA+AGG | - | chr8_3:21506511-21506530 | None:intergenic | 45.0% | |
| !! | TATGTAATAATAATTTAATA+TGG | - | chr8_3:21503198-21503217 | None:intergenic | 5.0% |
| !!! | AATATAAATTTTTATGTTTT+TGG | + | chr8_3:21504446-21504465 | Msa1281760:intron | 5.0% |
| !!! | ATAATTTTTTTTTAAAAACT+AGG | + | chr8_3:21505262-21505281 | Msa1281760:intron | 5.0% |
| CAGAGGAACTATTGGGAGCT+AGG | + | chr8_3:21504970-21504989 | Msa1281760:CDS | 50.0% | |
| GGAACTATTGGGAGCTAGGA+AGG | + | chr8_3:21504974-21504993 | Msa1281760:CDS | 50.0% | |
| !! | TGCTTTGGAGCATGCACCCT+TGG | + | chr8_3:21504859-21504878 | Msa1281760:CDS | 55.0% |
| !! | GCTTTGGAGCATGCACCCTT+GGG | + | chr8_3:21504860-21504879 | Msa1281760:CDS | 55.0% |
| CTAGGCCAGCTCGAAGCAAA+CGG | + | chr8_3:21505280-21505299 | Msa1281760:intron | 55.0% | |
| CAGTTCCGTTTGCTTCGAGC+TGG | - | chr8_3:21505288-21505307 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 21503056 | 21506772 | 21503056 | ID=Msa1281760;Name=Msa1281760 |
| chr8_3 | mRNA | 21503056 | 21506772 | 21503056 | ID=Msa1281760-mRNA-1;Parent=Msa1281760;Name=Msa1281760-mRNA-1;_AED=0.06;_eAED=0.06;_QI=71|1|1|1|1|1|6|242|314 |
| chr8_3 | exon | 21503056 | 21503172 | 21503056 | ID=Msa1281760-mRNA-1:exon:7833;Parent=Msa1281760-mRNA-1 |
| chr8_3 | exon | 21503293 | 21503468 | 21503293 | ID=Msa1281760-mRNA-1:exon:7834;Parent=Msa1281760-mRNA-1 |
| chr8_3 | exon | 21504849 | 21505067 | 21504849 | ID=Msa1281760-mRNA-1:exon:7835;Parent=Msa1281760-mRNA-1 |
| chr8_3 | exon | 21505803 | 21506027 | 21505803 | ID=Msa1281760-mRNA-1:exon:7836;Parent=Msa1281760-mRNA-1 |
| chr8_3 | exon | 21506122 | 21506190 | 21506122 | ID=Msa1281760-mRNA-1:exon:7837;Parent=Msa1281760-mRNA-1 |
| chr8_3 | exon | 21506321 | 21506772 | 21506321 | ID=Msa1281760-mRNA-1:exon:7838;Parent=Msa1281760-mRNA-1 |
| chr8_3 | five_prime_UTR | 21503056 | 21503126 | 21503056 | ID=Msa1281760-mRNA-1:five_prime_utr;Parent=Msa1281760-mRNA-1 |
| chr8_3 | CDS | 21503127 | 21503172 | 21503127 | ID=Msa1281760-mRNA-1:cds;Parent=Msa1281760-mRNA-1 |
| chr8_3 | CDS | 21503293 | 21503468 | 21503293 | ID=Msa1281760-mRNA-1:cds;Parent=Msa1281760-mRNA-1 |
| chr8_3 | CDS | 21504849 | 21505067 | 21504849 | ID=Msa1281760-mRNA-1:cds;Parent=Msa1281760-mRNA-1 |
| chr8_3 | CDS | 21505803 | 21506027 | 21505803 | ID=Msa1281760-mRNA-1:cds;Parent=Msa1281760-mRNA-1 |
| chr8_3 | CDS | 21506122 | 21506190 | 21506122 | ID=Msa1281760-mRNA-1:cds;Parent=Msa1281760-mRNA-1 |
| chr8_3 | CDS | 21506321 | 21506530 | 21506321 | ID=Msa1281760-mRNA-1:cds;Parent=Msa1281760-mRNA-1 |
| chr8_3 | three_prime_UTR | 21506531 | 21506772 | 21506531 | ID=Msa1281760-mRNA-1:three_prime_utr;Parent=Msa1281760-mRNA-1 |
| Gene Sequence |
| Protein sequence |
