Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1186240 | XP_013445082.1 | 97.771 | 314 | 7 | 0 | 1 | 314 | 1 | 314 | 0.0 | 635 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1186240 | sp|Q9ZVJ6|ANXD4_ARATH | 58.805 | 318 | 124 | 4 | 1 | 312 | 1 | 317 | 1.53e-127 | 369 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1186240 | G7LF83 | 97.771 | 314 | 7 | 0 | 1 | 314 | 1 | 314 | 0.0 | 635 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1186240 | Msa1240460 | 0.807906 | 4.020405e-50 | -8.615850e-47 |
| Msa1186240 | Msa1281760 | 0.830546 | 2.763021e-55 | -8.615850e-47 |
| Msa1186240 | Msa1321050 | 0.889152 | 3.128722e-73 | -8.615850e-47 |
| Msa1186240 | Msa1371590 | 0.822551 | 2.230210e-53 | -8.615850e-47 |
| Msa1186240 | Msa1379700 | 0.827241 | 1.743821e-54 | -8.615850e-47 |
| Msa0527260 | Msa1186240 | 0.825804 | 3.839198e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1186240 | MtrunA17_Chr8g0352581 | 97.771 | 314 | 7 | 0 | 1 | 314 | 1 | 314 | 0.0 | 635 |
| Msa1186240 | MtrunA17_Chr5g0425971 | 39.748 | 317 | 164 | 6 | 4 | 311 | 14 | 312 | 3.32e-63 | 202 |
| Msa1186240 | MtrunA17_Chr8g0352621 | 39.117 | 317 | 166 | 8 | 5 | 312 | 13 | 311 | 1.17e-59 | 193 |
| Msa1186240 | MtrunA17_Chr8g0352571 | 36.646 | 322 | 174 | 8 | 4 | 313 | 14 | 317 | 4.76e-58 | 189 |
| Msa1186240 | MtrunA17_Chr3g0083901 | 37.539 | 317 | 171 | 8 | 5 | 312 | 14 | 312 | 3.13e-56 | 184 |
| Msa1186240 | MtrunA17_Chr2g0293441 | 36.190 | 315 | 176 | 6 | 5 | 311 | 14 | 311 | 1.44e-54 | 180 |
| Msa1186240 | MtrunA17_Chr3g0083921 | 36.278 | 317 | 175 | 7 | 5 | 312 | 14 | 312 | 5.20e-54 | 179 |
| Msa1186240 | MtrunA17_Chr8g0352611 | 37.736 | 318 | 170 | 8 | 4 | 312 | 13 | 311 | 3.08e-52 | 174 |
| Msa1186240 | MtrunA17_Chr8g0382281 | 35.849 | 318 | 177 | 6 | 4 | 312 | 14 | 313 | 1.27e-48 | 165 |
| Msa1186240 | MtrunA17_Chr8g0352591 | 35.535 | 318 | 167 | 9 | 5 | 313 | 14 | 302 | 6.43e-47 | 160 |
| Msa1186240 | MtrunA17_Chr6g0479411 | 31.068 | 309 | 190 | 7 | 10 | 311 | 47 | 339 | 4.86e-36 | 132 |
| Msa1186240 | MtrunA17_Chr8g0393281 | 30.323 | 310 | 191 | 6 | 10 | 311 | 20 | 312 | 3.51e-35 | 129 |
| Msa1186240 | MtrunA17_Chr1g0162071 | 29.393 | 313 | 190 | 7 | 10 | 311 | 20 | 312 | 2.07e-34 | 127 |
| Msa1186240 | MtrunA17_Chr6g0479421 | 31.068 | 309 | 190 | 6 | 10 | 311 | 20 | 312 | 1.53e-33 | 125 |
| Msa1186240 | MtrunA17_Chr6g0479391 | 29.450 | 309 | 195 | 6 | 10 | 311 | 20 | 312 | 6.20e-32 | 121 |
| Msa1186240 | MtrunA17_Chr1g0210981 | 29.126 | 309 | 196 | 6 | 10 | 311 | 20 | 312 | 2.76e-29 | 114 |
| Msa1186240 | MtrunA17_Chr6g0461141 | 26.174 | 298 | 201 | 6 | 24 | 312 | 23 | 310 | 3.22e-25 | 103 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1186240 | AT2G38750.1 | 58.805 | 318 | 124 | 4 | 1 | 312 | 1 | 317 | 1.56e-128 | 369 |
| Msa1186240 | AT2G38750.2 | 59.333 | 300 | 118 | 3 | 16 | 312 | 2 | 300 | 1.90e-124 | 358 |
| Msa1186240 | AT1G35720.1 | 38.750 | 320 | 168 | 7 | 2 | 311 | 12 | 313 | 1.22e-62 | 201 |
| Msa1186240 | AT5G12380.1 | 37.736 | 318 | 171 | 6 | 5 | 313 | 14 | 313 | 2.19e-60 | 196 |
| Msa1186240 | AT5G10230.1 | 40.190 | 316 | 162 | 8 | 5 | 311 | 15 | 312 | 2.91e-58 | 190 |
| Msa1186240 | AT5G65020.1 | 38.413 | 315 | 168 | 6 | 8 | 313 | 18 | 315 | 5.79e-57 | 187 |
| Msa1186240 | AT5G10220.1 | 38.679 | 318 | 166 | 9 | 5 | 311 | 15 | 314 | 3.85e-54 | 179 |
| Msa1186240 | AT5G65020.2 | 37.662 | 308 | 166 | 6 | 15 | 313 | 10 | 300 | 3.92e-54 | 179 |
| Msa1186240 | AT2G38760.1 | 36.957 | 322 | 170 | 9 | 5 | 311 | 15 | 318 | 9.56e-52 | 173 |
| Msa1186240 | AT1G68090.1 | 30.351 | 313 | 192 | 8 | 8 | 311 | 18 | 313 | 3.94e-38 | 137 |
| Msa1186240 | AT1G68090.2 | 30.364 | 247 | 150 | 6 | 8 | 246 | 18 | 250 | 2.33e-27 | 107 |
Find 67 sgRNAs with CRISPR-Local
Find 186 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGATAACAGTATTGGGAAAA+TGG | 0.175129 | 8_1:+24359577 | Msa1186240:CDS |
| GATCATTCCACCTTTGAAAT+TGG | 0.200455 | 8_1:-24359665 | None:intergenic |
| TTGATTGAATGCCATATTCT+TGG | 0.227002 | 8_1:-24359353 | None:intergenic |
| ATGAAATTGAGCCTTTCTTT+AGG | 0.253678 | 8_1:-24361184 | None:intergenic |
| GCTGAGTATAACAACTTATA+TGG | 0.300228 | 8_1:+24362696 | Msa1186240:CDS |
| TGAAATTGAGCCTTTCTTTA+GGG | 0.301910 | 8_1:-24361183 | None:intergenic |
| AAGCACTATAAAGAGATTTC+TGG | 0.312193 | 8_1:+24362265 | Msa1186240:CDS |
| GCTAGGATCTTAATGACTTA+AGG | 0.319355 | 8_1:+24362390 | Msa1186240:intron |
| CCTTGGAGAGAGAATCTTAT+AGG | 0.322567 | 8_1:+24359604 | Msa1186240:CDS |
| AATGGCATTGGAAAGTGTTT+TGG | 0.322849 | 8_1:-24362152 | None:intergenic |
| CTTTGTTCCTTCATATCTAT+AGG | 0.341085 | 8_1:-24362101 | None:intergenic |
| ATCAGAATGCAGTGGTGCTT+TGG | 0.364820 | 8_1:+24361117 | Msa1186240:intron |
| TTGAGGATGATGAAGTAATA+AGG | 0.375348 | 8_1:+24362200 | Msa1186240:CDS |
| AAGATCTTCAGAGGAACTAT+TGG | 0.377291 | 8_1:+24361235 | Msa1186240:CDS |
| TGCTTTGGAGCATGCACCCT+TGG | 0.391368 | 8_1:+24361132 | Msa1186240:CDS |
| CATTGATATGAAGGAGATAA+AGG | 0.391945 | 8_1:+24362674 | Msa1186240:CDS |
| TGATGAAGTAATAAGGATAT+TGG | 0.398287 | 8_1:+24362207 | Msa1186240:CDS |
| TTAATAAAAGAACAAACCTT+TGG | 0.402834 | 8_1:+24362813 | Msa1186240:three_prime_UTR |
| AAATCATTGATAACAGTATT+GGG | 0.403331 | 8_1:+24359570 | Msa1186240:CDS |
| ACTTCATCATCCTCAACAAT+TGG | 0.409615 | 8_1:-24362193 | None:intergenic |
| AAAATTGAAAAGACTGCTAA+AGG | 0.413580 | 8_1:+24362735 | Msa1186240:CDS |
| GAAATCATTGATAACAGTAT+TGG | 0.424006 | 8_1:+24359569 | Msa1186240:CDS |
| TTGAGCATTCTTAATGGCAT+TGG | 0.429639 | 8_1:-24362164 | None:intergenic |
| GCTTTAACTCAAGCTTTCTC+AGG | 0.434534 | 8_1:+24359385 | Msa1186240:CDS |
| GATAACAGTATTGGGAAAAT+GGG | 0.447759 | 8_1:+24359578 | Msa1186240:CDS |
| GTTTCGTTTATGAAATAAAG+AGG | 0.449646 | 8_1:+24363004 | Msa1186240:three_prime_UTR |
| TTACCTTTCTATCATTGCCA+TGG | 0.452976 | 8_1:-24361322 | None:intergenic |
| CAGAGGAACTATTGGGAGCT+AGG | 0.463248 | 8_1:+24361243 | Msa1186240:CDS |
| AAGAAAGGCTCAATTTCATA+TGG | 0.467362 | 8_1:+24361188 | Msa1186240:CDS |
| GCAATTAAATATGATGAGTA+GGG | 0.483594 | 8_1:-24359298 | None:intergenic |
| AGATGCAACATCTTCTTCAA+TGG | 0.491454 | 8_1:-24361294 | None:intergenic |
| AGATCTTCAGAGGAACTATT+GGG | 0.492249 | 8_1:+24361236 | Msa1186240:CDS |
| CATCCATGGCAATGATAGAA+AGG | 0.496277 | 8_1:+24361319 | Msa1186240:CDS |
| TTAGCCTCCTCTAGCAATCA+AGG | 0.503479 | 8_1:-24362781 | None:intergenic |
| TAGAGCTGACATTGATATGA+AGG | 0.504202 | 8_1:+24362665 | Msa1186240:CDS |
| AGATGCACGTTTAGCAAAAG+AGG | 0.507874 | 8_1:+24361160 | Msa1186240:CDS |
| TGGAATGGTCAAAGAGAGAA+TGG | 0.508195 | 8_1:-24361274 | None:intergenic |
| GCAAAAGAGGCCCTAAAGAA+AGG | 0.511238 | 8_1:+24361173 | Msa1186240:CDS |
| AAATTGAAAAGACTGCTAAA+GGG | 0.514648 | 8_1:+24362736 | Msa1186240:CDS |
| ATTGGGAAAATGGGATCCCT+TGG | 0.515294 | 8_1:+24359587 | Msa1186240:CDS |
| GCTTTGGAGCATGCACCCTT+GGG | 0.524661 | 8_1:+24361133 | Msa1186240:CDS |
| ATCTTTCAAAACATTTCCAA+AGG | 0.525406 | 8_1:-24362829 | None:intergenic |
| GTGAGTGCCTATAGATATGA+AGG | 0.526990 | 8_1:+24362094 | Msa1186240:CDS |
| CAACATCTTCTTCAATGGAA+TGG | 0.529527 | 8_1:-24361289 | None:intergenic |
| AGCAATTAAATATGATGAGT+AGG | 0.529958 | 8_1:-24359299 | None:intergenic |
| GGAACTATTGGGAGCTAGGA+AGG | 0.530013 | 8_1:+24361247 | Msa1186240:CDS |
| TTGCTAACCTTGATTGCTAG+AGG | 0.531913 | 8_1:+24362774 | Msa1186240:CDS |
| CCTATAAGATTCTCTCTCCA+AGG | 0.548162 | 8_1:-24359604 | None:intergenic |
| AAACGTGCATCTCTTTCCCA+AGG | 0.568596 | 8_1:-24361149 | None:intergenic |
| ACCTTGCTAAAATATACTTG+TGG | 0.573019 | 8_1:-24362443 | None:intergenic |
| AATATACTTGTGGAGTACAA+AGG | 0.574763 | 8_1:-24362433 | None:intergenic |
| ATCATGAACGCCAATTTCAA+AGG | 0.576589 | 8_1:+24359655 | Msa1186240:CDS |
| GATGTTGCATCTCACATCCA+TGG | 0.585008 | 8_1:+24361305 | Msa1186240:CDS |
| CTATAAGATTCTCTCTCCAA+GGG | 0.593207 | 8_1:-24359603 | None:intergenic |
| GACTGCTAAAGGGAACTACA+AGG | 0.603067 | 8_1:+24362746 | Msa1186240:CDS |
| ATGAACGCCAATTTCAAAGG+TGG | 0.604776 | 8_1:+24359658 | Msa1186240:CDS |
| TTCTGGCAAGAATCTTGAAG+AGG | 0.605202 | 8_1:+24362282 | Msa1186240:CDS |
| TCAAAAGAAGCCAATTGTTG+AGG | 0.621583 | 8_1:+24362183 | Msa1186240:CDS |
| TAAAATAAATCAGAATGCAG+TGG | 0.621993 | 8_1:+24361109 | Msa1186240:intron |
| TGCAGCATTGAAAATTGATG+TGG | 0.633610 | 8_1:+24362602 | Msa1186240:CDS |
| AGATGACACTGCAAAATCAG+AGG | 0.643803 | 8_1:+24362129 | Msa1186240:CDS |
| CTAACCTTGATTGCTAGAGG+AGG | 0.643976 | 8_1:+24362777 | Msa1186240:CDS |
| TGCATGCACAAGATCTTCAG+AGG | 0.650638 | 8_1:+24361226 | Msa1186240:CDS |
| CTATAGATATGAAGGAACAA+AGG | 0.657119 | 8_1:+24362102 | Msa1186240:CDS |
| CAATTAAATATGATGAGTAG+GGG | 0.664709 | 8_1:-24359297 | None:intergenic |
| AACGTGCATCTCTTTCCCAA+GGG | 0.668764 | 8_1:-24361148 | None:intergenic |
| GTAACAATAATAACAACACA+AGG | 0.705703 | 8_1:-24362937 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATGTAGTAATAATTTAATA+TGG | - | chr8_1:24359432-24359451 | None:intergenic | 10.0% |
| !!! | TATATTTTCTTATTTGAAAA+TGG | + | chr8_1:24359827-24359846 | Msa1186240:intron | 10.0% |
| !!! | ATAATATATTCTTTTTGTTT+TGG | - | chr8_1:24359974-24359993 | None:intergenic | 10.0% |
| !!! | GATTATTTTTTTTAAGTTTA+AGG | - | chr8_1:24360247-24360266 | None:intergenic | 10.0% |
| !! | AATTTCATTAAAATATATGA+TGG | - | chr8_1:24360625-24360644 | None:intergenic | 10.0% |
| !!! | AAAAATTCTAATTTTGTTTT+TGG | - | chr8_1:24360682-24360701 | None:intergenic | 10.0% |
| !!! | AAAAATTCTAATTTGTTTTT+AGG | + | chr8_1:24360777-24360796 | Msa1186240:intron | 10.0% |
| !!! | AATTTTCTTCTTAATTATAA+GGG | - | chr8_1:24361008-24361027 | None:intergenic | 10.0% |
| !!! | AATTTTGATTAAACATATGA+AGG | + | chr8_1:24359887-24359906 | Msa1186240:intron | 15.0% |
| !!! | TTTTAAGAATTCTTTTTGTT+TGG | - | chr8_1:24359943-24359962 | None:intergenic | 15.0% |
| !!! | ATGACTTTTACAAAATAAAA+AGG | + | chr8_1:24359992-24360011 | Msa1186240:intron | 15.0% |
| !!! | AATAAAAAGGATATGTTTTT+TGG | + | chr8_1:24360005-24360024 | Msa1186240:intron | 15.0% |
| !!! | TGTTCAAAAAAATTTAAGAT+AGG | - | chr8_1:24360050-24360069 | None:intergenic | 15.0% |
| !! | ATTAGAGTTTAATAAGTAAA+TGG | + | chr8_1:24360480-24360499 | Msa1186240:intron | 15.0% |
| !! | ATCAAATGTTGATATATTTA+GGG | - | chr8_1:24360509-24360528 | None:intergenic | 15.0% |
| !! | AATCAAATGTTGATATATTT+AGG | - | chr8_1:24360510-24360529 | None:intergenic | 15.0% |
| !!! | AAAAACCTTAGAAATATTTT+AGG | - | chr8_1:24360541-24360560 | None:intergenic | 15.0% |
| !!! | TAAAATATTTCTAAGGTTTT+TGG | + | chr8_1:24360540-24360559 | Msa1186240:intron | 15.0% |
| !! | TTAATGAAATTTACTAGAAA+TGG | + | chr8_1:24360634-24360653 | Msa1186240:intron | 15.0% |
| !! | TAATGAAATTTACTAGAAAT+GGG | + | chr8_1:24360635-24360654 | Msa1186240:intron | 15.0% |
| !!! | TCATATATGAAAAATTTTGA+AGG | + | chr8_1:24360893-24360912 | Msa1186240:intron | 15.0% |
| !! | ATCAAATATTGGTATATTTA+AGG | + | chr8_1:24360951-24360970 | Msa1186240:intron | 15.0% |
| !! | TCAAATATTGGTATATTTAA+GGG | + | chr8_1:24360952-24360971 | Msa1186240:intron | 15.0% |
| !! | ATTATAAGGGTTAATTATAA+GGG | - | chr8_1:24360995-24361014 | None:intergenic | 15.0% |
| !! | AATTATAAGGGTTAATTATA+AGG | - | chr8_1:24360996-24361015 | None:intergenic | 15.0% |
| !!! | GAATTTTCTTCTTAATTATA+AGG | - | chr8_1:24361009-24361028 | None:intergenic | 15.0% |
| !! | ATTGTTACATGAAAAAAAAA+TGG | - | chr8_1:24361715-24361734 | None:intergenic | 15.0% |
| !!! | TTTTTTTTCATGTAACAATA+TGG | + | chr8_1:24361716-24361735 | Msa1186240:intron | 15.0% |
| !!! | TATTTTCTATATACACTTAA+TGG | - | chr8_1:24361886-24361905 | None:intergenic | 15.0% |
| !! | GTGAATTAGTATTATTTATA+TGG | + | chr8_1:24361982-24362001 | Msa1186240:intron | 15.0% |
| !!! | ATGTTTTTATTTTTGTTCAT+AGG | + | chr8_1:24362572-24362591 | Msa1186240:intron | 15.0% |
| !! | TTCATCAAATATCATCAATT+GGG | - | chr8_1:24359514-24359533 | None:intergenic | 20.0% |
| !! | ATTCATCAAATATCATCAAT+TGG | - | chr8_1:24359515-24359534 | None:intergenic | 20.0% |
| !!! | GAATTAATGATGTAATTTTC+AGG | + | chr8_1:24359531-24359550 | Msa1186240:intron | 20.0% |
| !!! | AAATCATTGATAACAGTATT+GGG | + | chr8_1:24359570-24359589 | Msa1186240:CDS | 20.0% |
| !!! | TCTTTTAATAGAAATGTTGA+AGG | + | chr8_1:24359804-24359823 | Msa1186240:intron | 20.0% |
| !!! | TGTTTTTTGGTAGAAAAAAA+AGG | + | chr8_1:24360018-24360037 | Msa1186240:intron | 20.0% |
| !!! | AGCTAAGAACATTTTTTTTA+GGG | - | chr8_1:24360342-24360361 | None:intergenic | 20.0% |
| !!! | TAGCTAAGAACATTTTTTTT+AGG | - | chr8_1:24360343-24360362 | None:intergenic | 20.0% |
| !! | CAAGTATTAATTATGTTAAC+AGG | - | chr8_1:24360375-24360394 | None:intergenic | 20.0% |
| !! | TCAAATGTTGATATATTTAG+GGG | - | chr8_1:24360508-24360527 | None:intergenic | 20.0% |
| !!! | TTTCATAGATGGAAAATTTT+GGG | - | chr8_1:24360569-24360588 | None:intergenic | 20.0% |
| !!! | ATTTCATAGATGGAAAATTT+TGG | - | chr8_1:24360570-24360589 | None:intergenic | 20.0% |
| !! | CATTAAAAACTATGAATGTT+AGG | + | chr8_1:24360840-24360859 | Msa1186240:intron | 20.0% |
| !!! | TAACATATTCTTTAGACTTT+TGG | - | chr8_1:24360920-24360939 | None:intergenic | 20.0% |
| !! | AAAAGTCTAAAGAATATGTT+AGG | + | chr8_1:24360919-24360938 | Msa1186240:intron | 20.0% |
| !! | AAAGTCTAAAGAATATGTTA+GGG | + | chr8_1:24360920-24360939 | Msa1186240:intron | 20.0% |
| !! | ATAAGGGTTAAATAAGTAAA+TGG | - | chr8_1:24360979-24360998 | None:intergenic | 20.0% |
| !!! | GAAAATTATATTTTGTTGTG+TGG | + | chr8_1:24361061-24361080 | Msa1186240:intron | 20.0% |
| !!! | TTTTAATCTATCTAATTCCA+TGG | + | chr8_1:24361392-24361411 | Msa1186240:intron | 20.0% |
| !!! | AATTCCATGGTTTTAAATTA+TGG | + | chr8_1:24361405-24361424 | Msa1186240:intron | 20.0% |
| !! | ATTAACCCAAAAATTAATGT+GGG | - | chr8_1:24361589-24361608 | None:intergenic | 20.0% |
| !!! | ACATTAATTTTTGGGTTAAT+CGG | + | chr8_1:24361589-24361608 | Msa1186240:intron | 20.0% |
| !!! | CTAGACTAAAAATTGATTTT+TGG | + | chr8_1:24361613-24361632 | Msa1186240:intron | 20.0% |
| !!! | GTTTCTCAAAACATTTTTTT+TGG | - | chr8_1:24361771-24361790 | None:intergenic | 20.0% |
| !! | ATATTTACATATCATTGTCT+AGG | - | chr8_1:24361915-24361934 | None:intergenic | 20.0% |
| !! | TTATGAATGTTAGATTTCAA+AGG | + | chr8_1:24361953-24361972 | Msa1186240:intron | 20.0% |
| !! | TTCAAAATTCAATCTTTAAG+TGG | + | chr8_1:24362482-24362501 | Msa1186240:intron | 20.0% |
| !!! | TTATTTTTGTTCATAGGTTT+TGG | + | chr8_1:24362578-24362597 | Msa1186240:intron | 20.0% |
| !! | TTAATAAAAGAACAAACCTT+TGG | + | chr8_1:24362813-24362832 | Msa1186240:three_prime_UTR | 20.0% |
| ! | CAATTAAATATGATGAGTAG+GGG | - | chr8_1:24359300-24359319 | None:intergenic | 25.0% |
| ! | GCAATTAAATATGATGAGTA+GGG | - | chr8_1:24359301-24359320 | None:intergenic | 25.0% |
| ! | AGCAATTAAATATGATGAGT+AGG | - | chr8_1:24359302-24359321 | None:intergenic | 25.0% |
| ! | TCAAAAACTTTCCAAGAATA+TGG | + | chr8_1:24359342-24359361 | Msa1186240:exon | 25.0% |
| !! | GAAATCATTGATAACAGTAT+TGG | + | chr8_1:24359569-24359588 | Msa1186240:CDS | 25.0% |
| ! | AAAAGAAAAACATCATCATC+TGG | - | chr8_1:24359790-24359809 | None:intergenic | 25.0% |
| !!! | TGTAAAATTTGCTTTTGCAT+AGG | - | chr8_1:24360168-24360187 | None:intergenic | 25.0% |
| ! | AAAATGTATTGCAATATGAC+AGG | + | chr8_1:24360429-24360448 | Msa1186240:intron | 25.0% |
| ! | CAAATGTTGATATATTTAGG+GGG | - | chr8_1:24360507-24360526 | None:intergenic | 25.0% |
| !!! | AACCTTAGAAATATTTTAGG+AGG | - | chr8_1:24360538-24360557 | None:intergenic | 25.0% |
| !! | TTCATAGATGGAAAATTTTG+GGG | - | chr8_1:24360568-24360587 | None:intergenic | 25.0% |
| !! | CATGAGTTGACTAAAAATTA+GGG | - | chr8_1:24360597-24360616 | None:intergenic | 25.0% |
| !! | ACATGAGTTGACTAAAAATT+AGG | - | chr8_1:24360598-24360617 | None:intergenic | 25.0% |
| ! | AAGTCTAAAGAATATGTTAG+GGG | + | chr8_1:24360921-24360940 | Msa1186240:intron | 25.0% |
| !! | TAATTTTCCAACTTGTGATT+TGG | - | chr8_1:24361049-24361068 | None:intergenic | 25.0% |
| ! | TAAAATAAATCAGAATGCAG+TGG | + | chr8_1:24361109-24361128 | Msa1186240:intron | 25.0% |
| ! | GATTAACCCAAAAATTAATG+TGG | - | chr8_1:24361590-24361609 | None:intergenic | 25.0% |
| !!! | AAAAATGTTTTGAGAAACGT+TGG | + | chr8_1:24361773-24361792 | Msa1186240:intron | 25.0% |
| ! | TCTATATACACTTAATGGTA+GGG | - | chr8_1:24361881-24361900 | None:intergenic | 25.0% |
| ! | TTCTATATACACTTAATGGT+AGG | - | chr8_1:24361882-24361901 | None:intergenic | 25.0% |
| !! | TGTTAGATTTCAAAGGTTTT+AGG | + | chr8_1:24361960-24361979 | Msa1186240:intron | 25.0% |
| ! | TGATGAAGTAATAAGGATAT+TGG | + | chr8_1:24362207-24362226 | Msa1186240:CDS | 25.0% |
| ! | ATACAACAAAAAGAGAAGAA+AGG | - | chr8_1:24362521-24362540 | None:intergenic | 25.0% |
| ! | AAAATTGAAAAGACTGCTAA+AGG | + | chr8_1:24362735-24362754 | Msa1186240:CDS | 25.0% |
| ! | AAATTGAAAAGACTGCTAAA+GGG | + | chr8_1:24362736-24362755 | Msa1186240:CDS | 25.0% |
| ! | ATCTTTCAAAACATTTCCAA+AGG | - | chr8_1:24362832-24362851 | None:intergenic | 25.0% |
| ! | GTAACAATAATAACAACACA+AGG | - | chr8_1:24362940-24362959 | None:intergenic | 25.0% |
| ! | GTTTCGTTTATGAAATAAAG+AGG | + | chr8_1:24363004-24363023 | Msa1186240:three_prime_UTR | 25.0% |
| TTGATTGAATGCCATATTCT+TGG | - | chr8_1:24359356-24359375 | None:intergenic | 30.0% | |
| !! | ATGATGTAATTTTCAGGACA+TGG | + | chr8_1:24359537-24359556 | Msa1186240:intron | 30.0% |
| !! | TGATGTAATTTTCAGGACAT+GGG | + | chr8_1:24359538-24359557 | Msa1186240:intron | 30.0% |
| ! | TGATAACAGTATTGGGAAAA+TGG | + | chr8_1:24359577-24359596 | Msa1186240:CDS | 30.0% |
| ! | GATAACAGTATTGGGAAAAT+GGG | + | chr8_1:24359578-24359597 | Msa1186240:CDS | 30.0% |
| ! | GTCCTCCTAAAATATTTCTA+AGG | + | chr8_1:24360533-24360552 | Msa1186240:intron | 30.0% |
| ! | TCATAGATGGAAAATTTTGG+GGG | - | chr8_1:24360567-24360586 | None:intergenic | 30.0% |
| TTAGGGACTAATTTCATAGA+TGG | - | chr8_1:24360580-24360599 | None:intergenic | 30.0% | |
| ! | CATGAGTTGACTAAAAAGTA+GGG | + | chr8_1:24360863-24360882 | Msa1186240:intron | 30.0% |
| AGTCTAAAGAATATGTTAGG+GGG | + | chr8_1:24360922-24360941 | Msa1186240:intron | 30.0% | |
| GAATAAACCAAATCACAAGT+TGG | + | chr8_1:24361039-24361058 | Msa1186240:intron | 30.0% | |
| ATGAAAAAGTCAACACACAA+GGG | - | chr8_1:24361088-24361107 | None:intergenic | 30.0% | |
| TGAAATTGAGCCTTTCTTTA+GGG | - | chr8_1:24361186-24361205 | None:intergenic | 30.0% | |
| ATGAAATTGAGCCTTTCTTT+AGG | - | chr8_1:24361187-24361206 | None:intergenic | 30.0% | |
| AAGAAAGGCTCAATTTCATA+TGG | + | chr8_1:24361188-24361207 | Msa1186240:CDS | 30.0% | |
| ! | ACGACCATAATTTAAAACCA+TGG | - | chr8_1:24361412-24361431 | None:intergenic | 30.0% |
| !!! | ATGGTTTTAAATTATGGTCG+TGG | + | chr8_1:24361411-24361430 | Msa1186240:intron | 30.0% |
| !!! | CAAGTGTTTTAAGAAATGTG+AGG | - | chr8_1:24361653-24361672 | None:intergenic | 30.0% |
| !! | CTTAAAACACTTGATTTGTC+CGG | + | chr8_1:24361660-24361679 | Msa1186240:intron | 30.0% |
| CTCAATCCATGCTAAAATAA+AGG | + | chr8_1:24361815-24361834 | Msa1186240:intron | 30.0% | |
| !!! | ATTTGGCCTTTATTTTAGCA+TGG | - | chr8_1:24361824-24361843 | None:intergenic | 30.0% |
| ATGCTAAAATAAAGGCCAAA+TGG | + | chr8_1:24361823-24361842 | Msa1186240:intron | 30.0% | |
| TGCTAAAATAAAGGCCAAAT+GGG | + | chr8_1:24361824-24361843 | Msa1186240:intron | 30.0% | |
| TACATATCATTGTCTAGGTT+TGG | - | chr8_1:24361910-24361929 | None:intergenic | 30.0% | |
| CTTTGTTCCTTCATATCTAT+AGG | - | chr8_1:24362104-24362123 | None:intergenic | 30.0% | |
| CTATAGATATGAAGGAACAA+AGG | + | chr8_1:24362102-24362121 | Msa1186240:CDS | 30.0% | |
| ! | CTTCTTTTGAGCATTCTTAA+TGG | - | chr8_1:24362173-24362192 | None:intergenic | 30.0% |
| TTGAGGATGATGAAGTAATA+AGG | + | chr8_1:24362200-24362219 | Msa1186240:CDS | 30.0% | |
| AAGCACTATAAAGAGATTTC+TGG | + | chr8_1:24362265-24362284 | Msa1186240:CDS | 30.0% | |
| ! | ATGTCTTTGTACATTTTGCT+AGG | + | chr8_1:24362373-24362392 | Msa1186240:intron | 30.0% |
| AATATACTTGTGGAGTACAA+AGG | - | chr8_1:24362436-24362455 | None:intergenic | 30.0% | |
| !!! | TCCACAAGTATATTTTAGCA+AGG | + | chr8_1:24362442-24362461 | Msa1186240:CDS | 30.0% |
| ACCTTGCTAAAATATACTTG+TGG | - | chr8_1:24362446-24362465 | None:intergenic | 30.0% | |
| CATTGATATGAAGGAGATAA+AGG | + | chr8_1:24362674-24362693 | Msa1186240:CDS | 30.0% | |
| GCTGAGTATAACAACTTATA+TGG | + | chr8_1:24362696-24362715 | Msa1186240:CDS | 30.0% | |
| !! | GATGTAATTTTCAGGACATG+GGG | + | chr8_1:24359539-24359558 | Msa1186240:intron | 35.0% |
| CTATAAGATTCTCTCTCCAA+GGG | - | chr8_1:24359606-24359625 | None:intergenic | 35.0% | |
| ATCATGAACGCCAATTTCAA+AGG | + | chr8_1:24359655-24359674 | Msa1186240:CDS | 35.0% | |
| !! | GATCATTCCACCTTTGAAAT+TGG | - | chr8_1:24359668-24359687 | None:intergenic | 35.0% |
| ! | ACATGAGTTTGTGCGTTTTA+AGG | + | chr8_1:24359707-24359726 | Msa1186240:CDS | 35.0% |
| ! | GCATGAGTTGACTAAAAAGT+AGG | + | chr8_1:24360862-24360881 | Msa1186240:intron | 35.0% |
| GGGGGACTAAAATCAAATAT+TGG | + | chr8_1:24360940-24360959 | Msa1186240:intron | 35.0% | |
| CATGAAAAAGTCAACACACA+AGG | - | chr8_1:24361089-24361108 | None:intergenic | 35.0% | |
| AAGATCTTCAGAGGAACTAT+TGG | + | chr8_1:24361235-24361254 | Msa1186240:CDS | 35.0% | |
| AGATCTTCAGAGGAACTATT+GGG | + | chr8_1:24361236-24361255 | Msa1186240:CDS | 35.0% | |
| CAACATCTTCTTCAATGGAA+TGG | - | chr8_1:24361292-24361311 | None:intergenic | 35.0% | |
| AGATGCAACATCTTCTTCAA+TGG | - | chr8_1:24361297-24361316 | None:intergenic | 35.0% | |
| TTACCTTTCTATCATTGCCA+TGG | - | chr8_1:24361325-24361344 | None:intergenic | 35.0% | |
| !!! | CGCTGTAGTTTTTGATTTTG+CGG | + | chr8_1:24361437-24361456 | Msa1186240:intron | 35.0% |
| ACCCAAAAATTAATGTGGGT+CGG | - | chr8_1:24361585-24361604 | None:intergenic | 35.0% | |
| CACATCTAGATTGTGTAATC+CGG | - | chr8_1:24361682-24361701 | None:intergenic | 35.0% | |
| ACCTAATATGACATCCCATT+TGG | - | chr8_1:24361841-24361860 | None:intergenic | 35.0% | |
| AATGGGATGTCATATTAGGT+TGG | + | chr8_1:24361841-24361860 | Msa1186240:intron | 35.0% | |
| ! | GAGCTGTTTCAAAAAGCAAT+AGG | - | chr8_1:24362062-24362081 | None:intergenic | 35.0% |
| !!! | TTGCTTTTTGAAACAGCTCT+TGG | + | chr8_1:24362063-24362082 | Msa1186240:intron | 35.0% |
| !!! | AATGGCATTGGAAAGTGTTT+TGG | - | chr8_1:24362155-24362174 | None:intergenic | 35.0% |
| TTGAGCATTCTTAATGGCAT+TGG | - | chr8_1:24362167-24362186 | None:intergenic | 35.0% | |
| TCAAAAGAAGCCAATTGTTG+AGG | + | chr8_1:24362183-24362202 | Msa1186240:CDS | 35.0% | |
| ACTTCATCATCCTCAACAAT+TGG | - | chr8_1:24362196-24362215 | None:intergenic | 35.0% | |
| GCAAAATGTACAAAGACATG+AGG | - | chr8_1:24362372-24362391 | None:intergenic | 35.0% | |
| GCTAGGATCTTAATGACTTA+AGG | + | chr8_1:24362390-24362409 | Msa1186240:intron | 35.0% | |
| ! | TGCAGCATTGAAAATTGATG+TGG | + | chr8_1:24362602-24362621 | Msa1186240:CDS | 35.0% |
| TAGAGCTGACATTGATATGA+AGG | + | chr8_1:24362665-24362684 | Msa1186240:CDS | 35.0% | |
| ! | GCAGTCTTTTCAATTTTCTG+AGG | - | chr8_1:24362732-24362751 | None:intergenic | 35.0% |
| GCTTTAACTCAAGCTTTCTC+AGG | + | chr8_1:24359385-24359404 | Msa1186240:CDS | 40.0% | |
| CCTATAAGATTCTCTCTCCA+AGG | - | chr8_1:24359607-24359626 | None:intergenic | 40.0% | |
| CCTTGGAGAGAGAATCTTAT+AGG | + | chr8_1:24359604-24359623 | Msa1186240:CDS | 40.0% | |
| ATGAACGCCAATTTCAAAGG+TGG | + | chr8_1:24359658-24359677 | Msa1186240:CDS | 40.0% | |
| AGATGCACGTTTAGCAAAAG+AGG | + | chr8_1:24361160-24361179 | Msa1186240:CDS | 40.0% | |
| TGGAATGGTCAAAGAGAGAA+TGG | - | chr8_1:24361277-24361296 | None:intergenic | 40.0% | |
| CATCCATGGCAATGATAGAA+AGG | + | chr8_1:24361319-24361338 | Msa1186240:CDS | 40.0% | |
| CCCAAAAATTAATGTGGGTC+GGG | - | chr8_1:24361584-24361603 | None:intergenic | 40.0% | |
| ! | CCCGACCCACATTAATTTTT+GGG | + | chr8_1:24361581-24361600 | Msa1186240:intron | 40.0% |
| GCCAAATGGGATGTCATATT+AGG | + | chr8_1:24361837-24361856 | Msa1186240:intron | 40.0% | |
| GTGAGTGCCTATAGATATGA+AGG | + | chr8_1:24362094-24362113 | Msa1186240:CDS | 40.0% | |
| AGATGACACTGCAAAATCAG+AGG | + | chr8_1:24362129-24362148 | Msa1186240:CDS | 40.0% | |
| TTCTGGCAAGAATCTTGAAG+AGG | + | chr8_1:24362282-24362301 | Msa1186240:CDS | 40.0% | |
| TTGCTAACCTTGATTGCTAG+AGG | + | chr8_1:24362774-24362793 | Msa1186240:CDS | 40.0% | |
| !! | GTAATTTTCAGGACATGGGG+TGG | + | chr8_1:24359542-24359561 | Msa1186240:intron | 45.0% |
| ATTGGGAAAATGGGATCCCT+TGG | + | chr8_1:24359587-24359606 | Msa1186240:CDS | 45.0% | |
| ATCAGAATGCAGTGGTGCTT+TGG | + | chr8_1:24361117-24361136 | Msa1186240:intron | 45.0% | |
| AACGTGCATCTCTTTCCCAA+GGG | - | chr8_1:24361151-24361170 | None:intergenic | 45.0% | |
| AAACGTGCATCTCTTTCCCA+AGG | - | chr8_1:24361152-24361171 | None:intergenic | 45.0% | |
| GCAAAAGAGGCCCTAAAGAA+AGG | + | chr8_1:24361173-24361192 | Msa1186240:CDS | 45.0% | |
| TGCATGCACAAGATCTTCAG+AGG | + | chr8_1:24361226-24361245 | Msa1186240:CDS | 45.0% | |
| GATGTTGCATCTCACATCCA+TGG | + | chr8_1:24361305-24361324 | Msa1186240:CDS | 45.0% | |
| ! | GCCCGACCCACATTAATTTT+TGG | + | chr8_1:24361580-24361599 | Msa1186240:intron | 45.0% |
| GACTGCTAAAGGGAACTACA+AGG | + | chr8_1:24362746-24362765 | Msa1186240:CDS | 45.0% | |
| CTAACCTTGATTGCTAGAGG+AGG | + | chr8_1:24362777-24362796 | Msa1186240:CDS | 45.0% | |
| TTAGCCTCCTCTAGCAATCA+AGG | - | chr8_1:24362784-24362803 | None:intergenic | 45.0% | |
| !!! | AATATAAATTTTTATGTTTT+TGG | + | chr8_1:24360719-24360738 | Msa1186240:intron | 5.0% |
| !!! | ATAATTTTTTTTTAAAAACT+AGG | + | chr8_1:24361535-24361554 | Msa1186240:intron | 5.0% |
| CAGAGGAACTATTGGGAGCT+AGG | + | chr8_1:24361243-24361262 | Msa1186240:CDS | 50.0% | |
| GGAACTATTGGGAGCTAGGA+AGG | + | chr8_1:24361247-24361266 | Msa1186240:CDS | 50.0% | |
| !! | TGCTTTGGAGCATGCACCCT+TGG | + | chr8_1:24361132-24361151 | Msa1186240:CDS | 55.0% |
| !! | GCTTTGGAGCATGCACCCTT+GGG | + | chr8_1:24361133-24361152 | Msa1186240:CDS | 55.0% |
| CTAGGCCAGCTCGAAGCAAA+CGG | + | chr8_1:24361553-24361572 | Msa1186240:intron | 55.0% | |
| CAGTTCCGTTTGCTTCGAGC+TGG | - | chr8_1:24361561-24361580 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 24359290 | 24363047 | 24359290 | ID=Msa1186240;Name=Msa1186240 |
| chr8_1 | mRNA | 24359290 | 24363047 | 24359290 | ID=Msa1186240-mRNA-1;Parent=Msa1186240;Name=Msa1186240-mRNA-1;_AED=0.02;_eAED=0.02;_QI=71|1|1|1|1|1|6|244|314 |
| chr8_1 | exon | 24359290 | 24359406 | 24359290 | ID=Msa1186240-mRNA-1:exon:8860;Parent=Msa1186240-mRNA-1 |
| chr8_1 | exon | 24359553 | 24359728 | 24359553 | ID=Msa1186240-mRNA-1:exon:8861;Parent=Msa1186240-mRNA-1 |
| chr8_1 | exon | 24361122 | 24361340 | 24361122 | ID=Msa1186240-mRNA-1:exon:8862;Parent=Msa1186240-mRNA-1 |
| chr8_1 | exon | 24362079 | 24362303 | 24362079 | ID=Msa1186240-mRNA-1:exon:8863;Parent=Msa1186240-mRNA-1 |
| chr8_1 | exon | 24362395 | 24362463 | 24362395 | ID=Msa1186240-mRNA-1:exon:8864;Parent=Msa1186240-mRNA-1 |
| chr8_1 | exon | 24362594 | 24363047 | 24362594 | ID=Msa1186240-mRNA-1:exon:8865;Parent=Msa1186240-mRNA-1 |
| chr8_1 | five_prime_UTR | 24359290 | 24359360 | 24359290 | ID=Msa1186240-mRNA-1:five_prime_utr;Parent=Msa1186240-mRNA-1 |
| chr8_1 | CDS | 24359361 | 24359406 | 24359361 | ID=Msa1186240-mRNA-1:cds;Parent=Msa1186240-mRNA-1 |
| chr8_1 | CDS | 24359553 | 24359728 | 24359553 | ID=Msa1186240-mRNA-1:cds;Parent=Msa1186240-mRNA-1 |
| chr8_1 | CDS | 24361122 | 24361340 | 24361122 | ID=Msa1186240-mRNA-1:cds;Parent=Msa1186240-mRNA-1 |
| chr8_1 | CDS | 24362079 | 24362303 | 24362079 | ID=Msa1186240-mRNA-1:cds;Parent=Msa1186240-mRNA-1 |
| chr8_1 | CDS | 24362395 | 24362463 | 24362395 | ID=Msa1186240-mRNA-1:cds;Parent=Msa1186240-mRNA-1 |
| chr8_1 | CDS | 24362594 | 24362803 | 24362594 | ID=Msa1186240-mRNA-1:cds;Parent=Msa1186240-mRNA-1 |
| chr8_1 | three_prime_UTR | 24362804 | 24363047 | 24362804 | ID=Msa1186240-mRNA-1:three_prime_utr;Parent=Msa1186240-mRNA-1 |
| Gene Sequence |
| Protein sequence |
