Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1281900 | XP_003616150.2 | 92.008 | 488 | 28 | 1 | 1 | 477 | 1 | 488 | 0.0 | 913 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1281900 | sp|Q6NQJ8|SDG40_ARATH | 56.790 | 486 | 196 | 6 | 1 | 476 | 1 | 482 | 0.0 | 564 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1281900 | G7KFS1 | 92.008 | 488 | 28 | 1 | 1 | 477 | 1 | 488 | 0.0 | 913 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1281900 | TR | SET |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1257270 | Msa1281900 | 0.865990 | 3.954369e-65 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1281900 | MtrunA17_Chr5g0433621 | 92.008 | 488 | 28 | 1 | 1 | 477 | 1 | 488 | 0.0 | 913 |
| Msa1281900 | MtrunA17_Chr3g0120751 | 25.564 | 266 | 155 | 11 | 51 | 303 | 92 | 327 | 1.39e-12 | 69.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1281900 | AT5G17240.1 | 56.790 | 486 | 196 | 6 | 1 | 476 | 1 | 482 | 0.0 | 564 |
| Msa1281900 | AT5G17240.2 | 57.178 | 411 | 166 | 5 | 76 | 476 | 1 | 411 | 2.27e-169 | 483 |
| Msa1281900 | AT3G55080.1 | 25.000 | 260 | 155 | 9 | 52 | 304 | 70 | 296 | 6.40e-11 | 64.7 |
Find 98 sgRNAs with CRISPR-Local
Find 294 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTAGTCATTAAAGCAGATTT+TGG | 0.219025 | 8_3:+21917253 | None:intergenic |
| CTCTTCTCTCTCCTCTGTTC+AGG | 0.231576 | 8_3:-21917179 | Msa1281900:intron |
| CAACACTCTCTTTCCTCTCT+TGG | 0.235733 | 8_3:-21917542 | Msa1281900:CDS |
| TAATTGTTGTAATGCAAATA+AGG | 0.241006 | 8_3:-21913280 | Msa1281900:three_prime_UTR |
| GTCGGACGTCTTGCATATTC+TGG | 0.242969 | 8_3:-21913685 | Msa1281900:CDS |
| TTGTTAAACTTATGTCATTC+AGG | 0.257944 | 8_3:-21913507 | Msa1281900:CDS |
| AACATTTAAGGCATGGCTTT+GGG | 0.315162 | 8_3:-21915156 | Msa1281900:CDS |
| CTCTTATTGCAATGTAATAC+TGG | 0.321869 | 8_3:-21913329 | Msa1281900:CDS |
| CACTTCTACTTCATGGTCTA+AGG | 0.325752 | 8_3:-21913800 | Msa1281900:CDS |
| GGGCAACCCCTCATAATAAA+AGG | 0.358661 | 8_3:-21913714 | Msa1281900:CDS |
| TTGTAAGGGATATGATTTAC+TGG | 0.358933 | 8_3:-21913244 | None:intergenic |
| CTATGTACACTTCTACTTCA+TGG | 0.363522 | 8_3:-21913807 | Msa1281900:CDS |
| GACTACACTCCAATGCATTC+AGG | 0.375734 | 8_3:+21913554 | None:intergenic |
| TAACATTTAAGGCATGGCTT+TGG | 0.385694 | 8_3:-21915157 | Msa1281900:CDS |
| AATAAGAGATACAATCAATA+AGG | 0.390425 | 8_3:+21913344 | None:intergenic |
| TAATTAAACAAGTCACCAAC+AGG | 0.396024 | 8_3:+21914416 | None:intergenic |
| GAAAGAAGCTCATGCCTTGA+TGG | 0.398662 | 8_3:-21915207 | Msa1281900:CDS |
| CGAGAAGGTCAATGGATAGA+TGG | 0.399385 | 8_3:-21913405 | Msa1281900:CDS |
| AGTCATAACTTTGCGGCAAA+TGG | 0.404610 | 8_3:+21915455 | None:intergenic |
| GCACCTGGAGAGGACCTATC+TGG | 0.423204 | 8_3:-21914389 | Msa1281900:CDS |
| ATGAAATCATCGTTATGAAA+TGG | 0.434118 | 8_3:-21913642 | Msa1281900:CDS |
| AGAATGTTGCAGTAGAGGTT+TGG | 0.444175 | 8_3:-21917320 | Msa1281900:intron |
| CAATCAAATGGAGACAAGAA+TGG | 0.446355 | 8_3:-21914344 | Msa1281900:CDS |
| GAATGTTGCAGTAGAGGTTT+GGG | 0.448690 | 8_3:-21917319 | Msa1281900:intron |
| CTTGTTATACGAAGTTGGTA+AGG | 0.457725 | 8_3:-21915509 | Msa1281900:CDS |
| GTTTGCTTGTTATACGAAGT+TGG | 0.462021 | 8_3:-21915514 | Msa1281900:CDS |
| AGGAAAGAGAGTGTTGAGAA+TGG | 0.462418 | 8_3:+21917549 | None:intergenic |
| TATGACTTGCTAGCCATGTT+TGG | 0.465171 | 8_3:-21915439 | Msa1281900:CDS |
| ATGGCTTTGGGCTGCTGCAA+CGG | 0.467154 | 8_3:-21915144 | Msa1281900:intron |
| CTACCTTTCCTCACTCTGGC+GGG | 0.467292 | 8_3:-21917502 | Msa1281900:intron |
| GTGCTGTGAGAGATCTTAAG+AGG | 0.468743 | 8_3:-21917297 | Msa1281900:CDS |
| CACCAGGTTCTATTATGCTA+TGG | 0.472726 | 8_3:-21913919 | Msa1281900:intron |
| AGCTATGTCTTGCTGTGAAT+AGG | 0.483856 | 8_3:-21917204 | Msa1281900:CDS |
| CTCCAATGCATTCAGGAGTA+AGG | 0.484839 | 8_3:+21913561 | None:intergenic |
| TGTTAAACTTATGTCATTCA+GGG | 0.485910 | 8_3:-21913506 | Msa1281900:CDS |
| TATGAAAACGAGAAGGTCAA+TGG | 0.486866 | 8_3:-21913413 | Msa1281900:CDS |
| TAGCCGTCTCATGGAGGCTC+AGG | 0.491464 | 8_3:-21913378 | Msa1281900:CDS |
| TGCGGCAAATGGACGAGGTA+AGG | 0.498856 | 8_3:+21915466 | None:intergenic |
| GCTAGGACAAATTACAAGAA+AGG | 0.501930 | 8_3:-21914233 | Msa1281900:CDS |
| AAATTACAAGAAAGGCGATC+AGG | 0.502432 | 8_3:-21914225 | Msa1281900:intron |
| AAACATCAGTTCTTCCATCA+AGG | 0.504879 | 8_3:+21915193 | None:intergenic |
| TTGGTAAGGGAAAGACTTCA+AGG | 0.512774 | 8_3:-21915495 | Msa1281900:CDS |
| GTTTCTACCTTTCCTCACTC+TGG | 0.514945 | 8_3:-21917506 | Msa1281900:CDS |
| TACATTATGAGCTTCTAAGA+AGG | 0.520589 | 8_3:+21913471 | None:intergenic |
| AAGAGAGTGTTGAGAATGGT+CGG | 0.528406 | 8_3:+21917553 | None:intergenic |
| GATGGAAATTAGCCGTCTCA+TGG | 0.528999 | 8_3:-21913387 | Msa1281900:CDS |
| GTACGAGTTCTGAAAGAGCT+AGG | 0.531868 | 8_3:-21917665 | Msa1281900:five_prime_UTR |
| GAAAGAGCTAGGTTAGAAGA+TGG | 0.535954 | 8_3:-21917654 | Msa1281900:exon |
| GCTGGTTGTTTATGCCCTGT+TGG | 0.537691 | 8_3:-21914431 | Msa1281900:CDS |
| AACTTTGCGGCAAATGGACG+AGG | 0.537904 | 8_3:+21915461 | None:intergenic |
| GCTAGCAAGTCATAACTTTG+CGG | 0.538816 | 8_3:+21915448 | None:intergenic |
| AAGAACATGGAAGGTTTGAA+AGG | 0.542145 | 8_3:-21917628 | Msa1281900:CDS |
| TACTAGCTGCGTTACGACTG+TGG | 0.542432 | 8_3:-21913735 | Msa1281900:CDS |
| TTTCTCAAATTCACCAAACA+TGG | 0.542605 | 8_3:+21915426 | None:intergenic |
| TACCTTACTCCTGAATGCAT+TGG | 0.549106 | 8_3:-21913563 | Msa1281900:CDS |
| GAAGTAGAAGTGTACATAGC+AGG | 0.549201 | 8_3:+21913811 | None:intergenic |
| AAGAACTGATGTTTAAGCCT+CGG | 0.551132 | 8_3:-21915184 | Msa1281900:CDS |
| CTCAGAGACTAACTGATGGT+GGG | 0.556902 | 8_3:-21914289 | Msa1281900:intron |
| TTGTTTAATTACGATGCACC+TGG | 0.559289 | 8_3:-21914404 | Msa1281900:CDS |
| ATACCAGATAGGTCCTCTCC+AGG | 0.561435 | 8_3:+21914386 | None:intergenic |
| ATCAGGTGGATGAAGCTATG+TGG | 0.568564 | 8_3:-21915268 | Msa1281900:intron |
| TTTGAGCTTCTTGAACACTA+CGG | 0.569876 | 8_3:-21913883 | Msa1281900:CDS |
| GTGTACATAGCAGGTTCCAA+AGG | 0.569923 | 8_3:+21913820 | None:intergenic |
| TCTACCTTTCCTCACTCTGG+CGG | 0.572108 | 8_3:-21917503 | Msa1281900:CDS |
| CTCGGACATTGCATATACCA+TGG | 0.573706 | 8_3:-21914460 | Msa1281900:CDS |
| CTACGTCGTCAATACCAGAT+AGG | 0.574667 | 8_3:+21914375 | None:intergenic |
| TTGTTATACGAAGTTGGTAA+GGG | 0.583923 | 8_3:-21915508 | Msa1281900:CDS |
| TCAGGTGGATGAAGCTATGT+GGG | 0.588137 | 8_3:-21915267 | Msa1281900:intron |
| TCGGACATTGCATATACCAT+GGG | 0.588653 | 8_3:-21914459 | Msa1281900:CDS |
| GGTTTGAAAGGTTCTTAACA+TGG | 0.589973 | 8_3:-21917616 | Msa1281900:CDS |
| TTGTTGAATCTGATATTCCA+AGG | 0.592444 | 8_3:+21917585 | Msa1281910:intron |
| TCTCAGAGACTAACTGATGG+TGG | 0.592968 | 8_3:-21914290 | Msa1281900:intron |
| GCCAGTTACCCGCCAGAGTG+AGG | 0.593667 | 8_3:+21917494 | None:intergenic |
| GTATCGTCTTCAATAGATGT+TGG | 0.593968 | 8_3:+21913583 | None:intergenic |
| TAGAAGATGGAACAAGAACA+TGG | 0.594815 | 8_3:-21917641 | Msa1281900:exon |
| TAATTACGATGCACCTGGAG+AGG | 0.595408 | 8_3:-21914399 | Msa1281900:CDS |
| TGCTGTGAGAGATCTTAAGA+GGG | 0.596123 | 8_3:-21917296 | Msa1281900:CDS |
| TGTACATAGCAGGTTCCAAA+GGG | 0.596868 | 8_3:+21913821 | None:intergenic |
| TAACAGAGACTGAACTTGCA+GGG | 0.598802 | 8_3:+21915399 | None:intergenic |
| CATTCTCAGAGACTAACTGA+TGG | 0.601638 | 8_3:-21914293 | Msa1281900:intron |
| CATATACCATGGGATGAAGC+TGG | 0.602506 | 8_3:-21914449 | Msa1281900:CDS |
| AGATGGAACAAGAACATGGA+AGG | 0.604086 | 8_3:-21917637 | Msa1281900:CDS |
| CATAATAAAAGGAGGTCTGT+CGG | 0.606789 | 8_3:-21913703 | Msa1281900:CDS |
| AAATGGAGACAAGAATGGAA+TGG | 0.608545 | 8_3:-21914339 | Msa1281900:intron |
| ATACCTGAGCCTCCATGAGA+CGG | 0.619857 | 8_3:+21913375 | None:intergenic |
| GCAGAGAGAATGACCAAGAG+AGG | 0.631070 | 8_3:+21917529 | None:intergenic |
| AAACAACCAGCTTCATCCCA+TGG | 0.633574 | 8_3:+21914443 | None:intergenic |
| TTTCATCTATGAAAACGAGA+AGG | 0.633735 | 8_3:-21913420 | Msa1281900:CDS |
| ACTAGCTGCGTTACGACTGT+GGG | 0.639311 | 8_3:-21913734 | Msa1281900:CDS |
| TTAACATGGACATCACACCT+TGG | 0.645130 | 8_3:-21917602 | Msa1281900:CDS |
| TCACTCTATATCCATCCCAA+CGG | 0.653728 | 8_3:-21913775 | Msa1281900:CDS |
| TTACCCGCCAGAGTGAGGAA+AGG | 0.662573 | 8_3:+21917499 | None:intergenic |
| CAACCCCTCATAATAAAAGG+AGG | 0.668522 | 8_3:-21913711 | Msa1281900:CDS |
| GCAGCTAGTAGCGCAAACGA+AGG | 0.670133 | 8_3:+21913748 | None:intergenic |
| GGAAATTAGCCGTCTCATGG+AGG | 0.680251 | 8_3:-21913384 | Msa1281900:CDS |
| GCTGTGAGAGATCTTAAGAG+GGG | 0.713261 | 8_3:-21917295 | Msa1281900:CDS |
| AATTAAACAAGTCACCAACA+GGG | 0.716642 | 8_3:+21914417 | None:intergenic |
| GTAAGGGAAAGACTTCAAGG+TGG | 0.809146 | 8_3:-21915492 | Msa1281900:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTAAATACAAAAAACTAT+TGG | + | chr8_3:21914104-21914123 | None:intergenic | 10.0% |
| !! | AATAATTCTAACAAAAAAAT+TGG | + | chr8_3:21915260-21915279 | None:intergenic | 10.0% |
| !! | TTTATGATAAAATTTATTCA+GGG | + | chr8_3:21916802-21916821 | None:intergenic | 10.0% |
| !! | ATTTATGATAAAATTTATTC+AGG | + | chr8_3:21916803-21916822 | None:intergenic | 10.0% |
| !! | ATTTAATTCTTGAAATTGTA+AGG | - | chr8_3:21914116-21914135 | Msa1281900:intron | 15.0% |
| !!! | ATTTTTTAGTTTATCTCATT+AGG | - | chr8_3:21915557-21915576 | Msa1281900:intron | 15.0% |
| !! | AAACCAAAACAAAAATAAAA+GGG | + | chr8_3:21915828-21915847 | None:intergenic | 15.0% |
| !! | TAAACCAAAACAAAAATAAA+AGG | + | chr8_3:21915829-21915848 | None:intergenic | 15.0% |
| !! | CGAATTAGAAAATATTTATA+CGG | + | chr8_3:21916913-21916932 | None:intergenic | 15.0% |
| !!! | TAAGTTATTTCTATAGCAAA+AGG | + | chr8_3:21915110-21915129 | None:intergenic | 20.0% |
| !!! | TAATTTTAATTACCTTCCAT+TGG | - | chr8_3:21915221-21915240 | Msa1281900:CDS | 20.0% |
| !! | TTCTAACAAAAAAATTGGAT+TGG | + | chr8_3:21915255-21915274 | None:intergenic | 20.0% |
| !! | AGCATAAAGTAAAAAACTAA+CGG | + | chr8_3:21915362-21915381 | None:intergenic | 20.0% |
| !!! | TATCCTCTATTTTATGTTAT+CGG | - | chr8_3:21916165-21916184 | Msa1281900:intron | 20.0% |
| !!! | GTAGATAATTTTCAATCAAA+TGG | - | chr8_3:21916575-21916594 | Msa1281900:intron | 20.0% |
| !!! | GAAATTTTAACATAACCATT+AGG | - | chr8_3:21916745-21916764 | Msa1281900:intron | 20.0% |
| !! | AATTGAATATGTAAACCTAA+TGG | + | chr8_3:21916763-21916782 | None:intergenic | 20.0% |
| !! | AATAAGAGATACAATCAATA+AGG | + | chr8_3:21917590-21917609 | Msa1281910:intron | 20.0% |
| !! | TAATTGTTGTAATGCAAATA+AGG | - | chr8_3:21917651-21917670 | Msa1281900:exon | 20.0% |
| !!! | GTTTTTCCTTATTTTTGTAA+GGG | - | chr8_3:21917673-21917692 | Msa1281900:five_prime_UTR | 20.0% |
| !!! | AAACTTTGCATTTGTTTTCT+TGG | - | chr8_3:21913500-21913519 | Msa1281900:CDS | 25.0% |
| !!! | AACTTTGCATTTGTTTTCTT+GGG | - | chr8_3:21913501-21913520 | Msa1281900:CDS | 25.0% |
| ! | CCAAAACAATACAACAAAAA+TGG | + | chr8_3:21913591-21913610 | None:intergenic | 25.0% |
| !!! | CCATTTTTGTTGTATTGTTT+TGG | - | chr8_3:21913588-21913607 | Msa1281900:CDS | 25.0% |
| !!! | TGTTCTGTTCATGTTTTTTT+AGG | - | chr8_3:21913808-21913827 | Msa1281900:CDS | 25.0% |
| ! | TTGTAATTTCATTAACAGCA+GGG | + | chr8_3:21914157-21914176 | None:intergenic | 25.0% |
| ! | TTTGTAATTTCATTAACAGC+AGG | + | chr8_3:21914158-21914177 | None:intergenic | 25.0% |
| ! | ACTAAATTAACCGATCTAAA+GGG | + | chr8_3:21914218-21914237 | None:intergenic | 25.0% |
| ! | ATTGAAATCATACATCACAT+TGG | + | chr8_3:21914263-21914282 | None:intergenic | 25.0% |
| !! | TTTAAGTCTTAGAGTATTCT+TGG | + | chr8_3:21914349-21914368 | None:intergenic | 25.0% |
| ! | AACAAATTGAGGACTATAAA+AGG | + | chr8_3:21914429-21914448 | None:intergenic | 25.0% |
| ! | GGAAGGTAATTAAAATTAAG+AGG | + | chr8_3:21915219-21915238 | None:intergenic | 25.0% |
| ! | TGTTAGAATTATTGTATGCA+TGG | - | chr8_3:21915267-21915286 | Msa1281900:intron | 25.0% |
| ! | ATCTGCAATATAAAAAAGCT+CGG | + | chr8_3:21915390-21915409 | None:intergenic | 25.0% |
| ! | CATTAGGTTAGATTATATCT+TGG | - | chr8_3:21915573-21915592 | Msa1281900:intron | 25.0% |
| ! | AATAACTCATCTTTATGTTG+TGG | - | chr8_3:21915638-21915657 | Msa1281900:intron | 25.0% |
| ! | TACAAAAAGCTAAATCAGAA+TGG | - | chr8_3:21915702-21915721 | Msa1281900:intron | 25.0% |
| ! | CTACATTATAATGTTGTCAA+CGG | + | chr8_3:21916038-21916057 | None:intergenic | 25.0% |
| ! | AATGTTGTAACAGACTTATT+GGG | - | chr8_3:21916259-21916278 | Msa1281900:intron | 25.0% |
| !!! | ATTGATTCATTTTGTGTTCT+TGG | - | chr8_3:21916352-21916371 | Msa1281900:intron | 25.0% |
| ! | TTTACTCATGACAAGTAAAA+TGG | + | chr8_3:21916389-21916408 | None:intergenic | 25.0% |
| ! | ATGAAATCATCGTTATGAAA+TGG | - | chr8_3:21917289-21917308 | Msa1281900:CDS | 25.0% |
| ! | TTGTTAAACTTATGTCATTC+AGG | - | chr8_3:21917424-21917443 | Msa1281900:intron | 25.0% |
| ! | TGTTAAACTTATGTCATTCA+GGG | - | chr8_3:21917425-21917444 | Msa1281900:intron | 25.0% |
| !!! | GGTTTTTCCTTATTTTTGTA+AGG | - | chr8_3:21917672-21917691 | Msa1281900:five_prime_UTR | 25.0% |
| ! | TCATATCCCTTACAAAAATA+AGG | + | chr8_3:21917682-21917701 | Msa1281910:intron | 25.0% |
| TTGTTGAATCTGATATTCCA+AGG | + | chr8_3:21913349-21913368 | None:intergenic | 30.0% | |
| TTTCTTGGGTGATTAATCAA+AGG | - | chr8_3:21913515-21913534 | Msa1281900:CDS | 30.0% | |
| TTCTTGGGTGATTAATCAAA+GGG | - | chr8_3:21913516-21913535 | Msa1281900:CDS | 30.0% | |
| ! | CTAGTCATTAAAGCAGATTT+TGG | + | chr8_3:21913681-21913700 | None:intergenic | 30.0% |
| ACATGAACAGAACAAAAACT+TGG | + | chr8_3:21913802-21913821 | None:intergenic | 30.0% | |
| CATTTGATCCATGAAATAGT+AGG | - | chr8_3:21913852-21913871 | Msa1281900:CDS | 30.0% | |
| GATACATTCCTACTATTTCA+TGG | + | chr8_3:21913863-21913882 | None:intergenic | 30.0% | |
| CGACATTGCAAAATGTTAAT+CGG | - | chr8_3:21913923-21913942 | Msa1281900:intron | 30.0% | |
| GACTAAATTAACCGATCTAA+AGG | + | chr8_3:21914219-21914238 | None:intergenic | 30.0% | |
| AACTTAACATGCTTGACATT+TGG | + | chr8_3:21914818-21914837 | None:intergenic | 30.0% | |
| TTTATGAACTGGACTGATAT+GGG | + | chr8_3:21914868-21914887 | None:intergenic | 30.0% | |
| ATAAGTGCTCATCATGATAA+GGG | - | chr8_3:21915133-21915152 | Msa1281900:intron | 30.0% | |
| !! | TTGTTATACGAAGTTGGTAA+GGG | - | chr8_3:21915423-21915442 | Msa1281900:CDS | 30.0% |
| TTTCTCAAATTCACCAAACA+TGG | + | chr8_3:21915508-21915527 | None:intergenic | 30.0% | |
| ATCTTTATGTTGTGGTTATC+AGG | - | chr8_3:21915646-21915665 | Msa1281900:intron | 30.0% | |
| !! | GGTTTTTAACATTTAAGGCA+TGG | - | chr8_3:21915768-21915787 | Msa1281900:intron | 30.0% |
| CCAAAACAAAAATAAAAGGG+AGG | + | chr8_3:21915825-21915844 | None:intergenic | 30.0% | |
| !!! | CCTCCCTTTTATTTTTGTTT+TGG | - | chr8_3:21915822-21915841 | Msa1281900:intron | 30.0% |
| GTAGCGAAATTTGAACAAAT+CGG | - | chr8_3:21916054-21916073 | Msa1281900:intron | 30.0% | |
| CAAGCAAAAGATTTCAAGAA+TGG | + | chr8_3:21916220-21916239 | None:intergenic | 30.0% | |
| CAATGTTGTAACAGACTTAT+TGG | - | chr8_3:21916258-21916277 | Msa1281900:intron | 30.0% | |
| ATGTTGTAACAGACTTATTG+GGG | - | chr8_3:21916260-21916279 | Msa1281900:intron | 30.0% | |
| TCAAAAACCAGATATCTTCT+CGG | - | chr8_3:21916453-21916472 | Msa1281900:intron | 30.0% | |
| AATTAAACAAGTCACCAACA+GGG | + | chr8_3:21916517-21916536 | None:intergenic | 30.0% | |
| TAATTAAACAAGTCACCAAC+AGG | + | chr8_3:21916518-21916537 | None:intergenic | 30.0% | |
| !! | ATGCATATTGCTTTTATGCT+AGG | - | chr8_3:21916681-21916700 | Msa1281900:intron | 30.0% |
| TGTAGACTACAAACTATTAC+AGG | - | chr8_3:21916870-21916889 | Msa1281900:intron | 30.0% | |
| GTAGACTACAAACTATTACA+GGG | - | chr8_3:21916871-21916890 | Msa1281900:intron | 30.0% | |
| ! | GGGATGAAAATTTTGTCATT+TGG | + | chr8_3:21917093-21917112 | None:intergenic | 30.0% |
| ! | TGACAAAATTTTCATCCCTT+TGG | - | chr8_3:21917095-21917114 | Msa1281900:intron | 30.0% |
| ! | TACATTATGAGCTTCTAAGA+AGG | + | chr8_3:21917463-21917482 | None:intergenic | 30.0% |
| TTTCATCTATGAAAACGAGA+AGG | - | chr8_3:21917511-21917530 | Msa1281900:CDS | 30.0% | |
| CTCTTATTGCAATGTAATAC+TGG | - | chr8_3:21917602-21917621 | Msa1281900:CDS | 30.0% | |
| TAGAAGATGGAACAAGAACA+TGG | - | chr8_3:21913290-21913309 | Msa1281900:three_prime_UTR | 35.0% | |
| AAGAACATGGAAGGTTTGAA+AGG | - | chr8_3:21913303-21913322 | Msa1281900:exon | 35.0% | |
| GGTTTGAAAGGTTCTTAACA+TGG | - | chr8_3:21913315-21913334 | Msa1281900:CDS | 35.0% | |
| AAGAAGAAAAACCTGAACAG+AGG | + | chr8_3:21913766-21913785 | None:intergenic | 35.0% | |
| ACCTAATTAACAGGTGCTAA+TGG | - | chr8_3:21914072-21914091 | Msa1281900:intron | 35.0% | |
| TCCATTAGCACCTGTTAATT+AGG | + | chr8_3:21914076-21914095 | None:intergenic | 35.0% | |
| !! | TCCTCAATTTGTTGACTTGA+TGG | - | chr8_3:21914436-21914455 | Msa1281900:CDS | 35.0% |
| !! | CCTCAATTTGTTGACTTGAT+GGG | - | chr8_3:21914437-21914456 | Msa1281900:CDS | 35.0% |
| TTAACATGCTTGACATTTGG+TGG | + | chr8_3:21914815-21914834 | None:intergenic | 35.0% | |
| GTTTATGAACTGGACTGATA+TGG | + | chr8_3:21914869-21914888 | None:intergenic | 35.0% | |
| ! | AGGCAATTTGGTTTATGAAC+TGG | + | chr8_3:21914879-21914898 | None:intergenic | 35.0% |
| TGTGCAATGTTAGAGACTAA+TGG | - | chr8_3:21914903-21914922 | Msa1281900:intron | 35.0% | |
| TTAGAGACTAATGGTCTGTT+TGG | - | chr8_3:21914912-21914931 | Msa1281900:intron | 35.0% | |
| ! | ATAAGTGTTGTGAGACTGTT+TGG | - | chr8_3:21914963-21914982 | Msa1281900:intron | 35.0% |
| ! | TAAGTGTTGTGAGACTGTTT+GGG | - | chr8_3:21914964-21914983 | Msa1281900:intron | 35.0% |
| !! | GCTGTTTTCATAAGCTATCT+TGG | + | chr8_3:21915054-21915073 | None:intergenic | 35.0% |
| CATAAGTGCTCATCATGATA+AGG | - | chr8_3:21915132-21915151 | Msa1281900:intron | 35.0% | |
| AATAAGTTGTGTGTCCAAAC+AGG | - | chr8_3:21915174-21915193 | Msa1281900:CDS | 35.0% | |
| TTGGTTCAATAACCAATGGA+AGG | + | chr8_3:21915236-21915255 | None:intergenic | 35.0% | |
| !! | TGGATTGGTTCAATAACCAA+TGG | + | chr8_3:21915240-21915259 | None:intergenic | 35.0% |
| TGATGAAACCAAATCCTAAC+AGG | + | chr8_3:21915315-21915334 | None:intergenic | 35.0% | |
| !! | GTTTGCTTGTTATACGAAGT+TGG | - | chr8_3:21915417-21915436 | Msa1281900:CDS | 35.0% |
| !! | CTTGTTATACGAAGTTGGTA+AGG | - | chr8_3:21915422-21915441 | Msa1281900:CDS | 35.0% |
| TTTATGTTGTGGTTATCAGG+TGG | - | chr8_3:21915649-21915668 | Msa1281900:intron | 35.0% | |
| AAACATCAGTTCTTCCATCA+AGG | + | chr8_3:21915741-21915760 | None:intergenic | 35.0% | |
| AAGAACTGATGTTTAAGCCT+CGG | - | chr8_3:21915747-21915766 | Msa1281900:intron | 35.0% | |
| ! | GCCTCGGTTTTTAACATTTA+AGG | - | chr8_3:21915763-21915782 | Msa1281900:intron | 35.0% |
| GCCTTAAATGTTAAAAACCG+AGG | + | chr8_3:21915767-21915786 | None:intergenic | 35.0% | |
| ! | TAACATTTAAGGCATGGCTT+TGG | - | chr8_3:21915774-21915793 | Msa1281900:intron | 35.0% |
| ! | AACATTTAAGGCATGGCTTT+GGG | - | chr8_3:21915775-21915794 | Msa1281900:intron | 35.0% |
| ! | AGAATGGTGAGGCAAATTTT+AGG | - | chr8_3:21915920-21915939 | Msa1281900:intron | 35.0% |
| ! | TGCAATGACGTTTTATATGG+TGG | - | chr8_3:21915997-21916016 | Msa1281900:intron | 35.0% |
| CATTATAATGTTGTCAACGG+CGG | + | chr8_3:21916035-21916054 | None:intergenic | 35.0% | |
| !! | TATGAAGCGTCGTCAAATAA+CGG | - | chr8_3:21916102-21916121 | Msa1281900:intron | 35.0% |
| TCGCCGATAACATAAAATAG+AGG | + | chr8_3:21916171-21916190 | None:intergenic | 35.0% | |
| ! | AAATCTTTTGCTTGCCTTTC+TGG | - | chr8_3:21916226-21916245 | Msa1281900:intron | 35.0% |
| TTGTTTAATTACGATGCACC+TGG | - | chr8_3:21916527-21916546 | Msa1281900:intron | 35.0% | |
| CAATCAAATGGAGACAAGAA+TGG | - | chr8_3:21916587-21916606 | Msa1281900:intron | 35.0% | |
| AAATGGAGACAAGAATGGAA+TGG | - | chr8_3:21916592-21916611 | Msa1281900:intron | 35.0% | |
| GCTAGGACAAATTACAAGAA+AGG | - | chr8_3:21916698-21916717 | Msa1281900:intron | 35.0% | |
| AAATTACAAGAAAGGCGATC+AGG | - | chr8_3:21916706-21916725 | Msa1281900:intron | 35.0% | |
| ATCTTCATTCCACTGTTTAG+TGG | - | chr8_3:21916962-21916981 | Msa1281900:intron | 35.0% | |
| ! | ATTCCACTGTTTAGTGGATA+AGG | - | chr8_3:21916968-21916987 | Msa1281900:intron | 35.0% |
| AATAGAACCTGGTGAAAACA+AGG | + | chr8_3:21917006-21917025 | None:intergenic | 35.0% | |
| TTCCATAGCATAATAGAACC+TGG | + | chr8_3:21917017-21917036 | None:intergenic | 35.0% | |
| TTTGAGCTTCTTGAACACTA+CGG | - | chr8_3:21917048-21917067 | Msa1281900:intron | 35.0% | |
| CTATGTACACTTCTACTTCA+TGG | - | chr8_3:21917124-21917143 | Msa1281900:intron | 35.0% | |
| ! | AGACCTCCTTTTATTATGAG+GGG | + | chr8_3:21917226-21917245 | None:intergenic | 35.0% |
| ! | CAGACCTCCTTTTATTATGA+GGG | + | chr8_3:21917227-21917246 | None:intergenic | 35.0% |
| ! | ACAGACCTCCTTTTATTATG+AGG | + | chr8_3:21917228-21917247 | None:intergenic | 35.0% |
| CATAATAAAAGGAGGTCTGT+CGG | - | chr8_3:21917228-21917247 | Msa1281900:CDS | 35.0% | |
| GTATCGTCTTCAATAGATGT+TGG | + | chr8_3:21917351-21917370 | None:intergenic | 35.0% | |
| TATGAAAACGAGAAGGTCAA+TGG | - | chr8_3:21917518-21917537 | Msa1281900:CDS | 35.0% | |
| GAAAGAGCTAGGTTAGAAGA+TGG | - | chr8_3:21913277-21913296 | Msa1281900:three_prime_UTR | 40.0% | |
| AGATGGAACAAGAACATGGA+AGG | - | chr8_3:21913294-21913313 | Msa1281900:exon | 40.0% | |
| TTAACATGGACATCACACCT+TGG | - | chr8_3:21913329-21913348 | Msa1281900:CDS | 40.0% | |
| !! | AAGAGAGTGTTGAGAATGGT+CGG | + | chr8_3:21913381-21913400 | None:intergenic | 40.0% |
| !! | AGGAAAGAGAGTGTTGAGAA+TGG | + | chr8_3:21913385-21913404 | None:intergenic | 40.0% |
| TTTGGAGAATGTTGCAGTAG+AGG | - | chr8_3:21913606-21913625 | Msa1281900:CDS | 40.0% | |
| AGAATGTTGCAGTAGAGGTT+TGG | - | chr8_3:21913611-21913630 | Msa1281900:CDS | 40.0% | |
| GAATGTTGCAGTAGAGGTTT+GGG | - | chr8_3:21913612-21913631 | Msa1281900:CDS | 40.0% | |
| TGCTGTGAGAGATCTTAAGA+GGG | - | chr8_3:21913635-21913654 | Msa1281900:CDS | 40.0% | |
| ! | AGCTATGTCTTGCTGTGAAT+AGG | - | chr8_3:21913727-21913746 | Msa1281900:CDS | 40.0% |
| ! | AATCGGATTTGTTCCTCTGT+TGG | - | chr8_3:21913940-21913959 | Msa1281900:intron | 40.0% |
| GTTCCTCTGTTGGTATTTGT+AGG | - | chr8_3:21913950-21913969 | Msa1281900:intron | 40.0% | |
| GTTCCTACAAATACCAACAG+AGG | + | chr8_3:21913956-21913975 | None:intergenic | 40.0% | |
| AACAGAGTCTGATCAAGAGA+CGG | - | chr8_3:21914049-21914068 | Msa1281900:intron | 40.0% | |
| AAGAGACGGACCTAATTAAC+AGG | - | chr8_3:21914063-21914082 | Msa1281900:intron | 40.0% | |
| TTCCTCTAGTCCCTTTAGAT+CGG | - | chr8_3:21914205-21914224 | Msa1281900:intron | 40.0% | |
| ACATCACATTGGACTCATGA+AGG | + | chr8_3:21914252-21914271 | None:intergenic | 40.0% | |
| TTGTTCACGTGTTACAACAG+TGG | - | chr8_3:21914305-21914324 | Msa1281900:intron | 40.0% | |
| TATAAAAGGAGACCCTTAGG+AGG | + | chr8_3:21914415-21914434 | None:intergenic | 40.0% | |
| GACTATAAAAGGAGACCCTT+AGG | + | chr8_3:21914418-21914437 | None:intergenic | 40.0% | |
| CCCATCAAGTCAACAAATTG+AGG | + | chr8_3:21914440-21914459 | None:intergenic | 40.0% | |
| GCAACAACTGTGTGTGAATT+AGG | - | chr8_3:21914483-21914502 | Msa1281900:intron | 40.0% | |
| CTGTGCAAATCAGCTTATTG+TGG | + | chr8_3:21914659-21914678 | None:intergenic | 40.0% | |
| ACAAATGTCTACGCCTTAAC+AGG | + | chr8_3:21914759-21914778 | None:intergenic | 40.0% | |
| !! | ACATTTGGTGGACTGTAAAC+TGG | + | chr8_3:21914803-21914822 | None:intergenic | 40.0% |
| ATTGCACACTTCAGGCAATT+TGG | + | chr8_3:21914891-21914910 | None:intergenic | 40.0% | |
| TCTCTAACATTGCACACTTC+AGG | + | chr8_3:21914899-21914918 | None:intergenic | 40.0% | |
| GACTAATGGTCTGTTTGGAT+TGG | - | chr8_3:21914917-21914936 | Msa1281900:intron | 40.0% | |
| TGTGTCCAAACAGGTCTAAA+TGG | - | chr8_3:21915183-21915202 | Msa1281900:CDS | 40.0% | |
| CTTGACCATTTAGACCTGTT+TGG | + | chr8_3:21915191-21915210 | None:intergenic | 40.0% | |
| GAAACCAAATCCTAACAGGT+GGG | + | chr8_3:21915311-21915330 | None:intergenic | 40.0% | |
| TGAAACCAAATCCTAACAGG+TGG | + | chr8_3:21915312-21915331 | None:intergenic | 40.0% | |
| TTGGTAAGGGAAAGACTTCA+AGG | - | chr8_3:21915436-21915455 | Msa1281900:CDS | 40.0% | |
| AGTCATAACTTTGCGGCAAA+TGG | + | chr8_3:21915479-21915498 | None:intergenic | 40.0% | |
| GCTAGCAAGTCATAACTTTG+CGG | + | chr8_3:21915486-21915505 | None:intergenic | 40.0% | |
| !! | TATGACTTGCTAGCCATGTT+TGG | - | chr8_3:21915492-21915511 | Msa1281900:CDS | 40.0% |
| TAACAGAGACTGAACTTGCA+GGG | + | chr8_3:21915535-21915554 | None:intergenic | 40.0% | |
| ! | GGCTGCAATGACGTTTTATA+TGG | - | chr8_3:21915994-21916013 | Msa1281900:intron | 40.0% |
| TCATACTGAGTAGCGTAAAG+TGG | + | chr8_3:21916087-21916106 | None:intergenic | 40.0% | |
| !! | TCGTCAAATAACGGATAGAG+CGG | - | chr8_3:21916111-21916130 | Msa1281900:intron | 40.0% |
| TTATCGGCGATTGACATCAT+TGG | - | chr8_3:21916181-21916200 | Msa1281900:intron | 40.0% | |
| CATTGATCCAAGTACCAGAA+AGG | + | chr8_3:21916243-21916262 | None:intergenic | 40.0% | |
| TCGGACATTGCATATACCAT+GGG | - | chr8_3:21916472-21916491 | Msa1281900:intron | 40.0% | |
| CATTCTCAGAGACTAACTGA+TGG | - | chr8_3:21916638-21916657 | Msa1281900:intron | 40.0% | |
| ATCAGGTAGTGCACAATTCT+TGG | - | chr8_3:21916723-21916742 | Msa1281900:intron | 40.0% | |
| ATGCCTTATCCACTAAACAG+TGG | + | chr8_3:21916974-21916993 | None:intergenic | 40.0% | |
| !!! | CAAGTTACCTTGTTTTCACC+AGG | - | chr8_3:21916996-21917015 | Msa1281900:intron | 40.0% |
| CACCAGGTTCTATTATGCTA+TGG | - | chr8_3:21917012-21917031 | Msa1281900:intron | 40.0% | |
| TGTACATAGCAGGTTCCAAA+GGG | + | chr8_3:21917113-21917132 | None:intergenic | 40.0% | |
| ! | GAAGTAGAAGTGTACATAGC+AGG | + | chr8_3:21917123-21917142 | None:intergenic | 40.0% |
| CACTTCTACTTCATGGTCTA+AGG | - | chr8_3:21917131-21917150 | Msa1281900:intron | 40.0% | |
| TCACTCTATATCCATCCCAA+CGG | - | chr8_3:21917156-21917175 | Msa1281900:intron | 40.0% | |
| CAACCCCTCATAATAAAAGG+AGG | - | chr8_3:21917220-21917239 | Msa1281900:CDS | 40.0% | |
| TACCTTACTCCTGAATGCAT+TGG | - | chr8_3:21917368-21917387 | Msa1281900:intron | 40.0% | |
| !! | GTACGAGTTCTGAAAGAGCT+AGG | - | chr8_3:21913266-21913285 | Msa1281900:three_prime_UTR | 45.0% |
| CAACACTCTCTTTCCTCTCT+TGG | - | chr8_3:21913389-21913408 | Msa1281900:CDS | 45.0% | |
| GTTTCTACCTTTCCTCACTC+TGG | - | chr8_3:21913425-21913444 | Msa1281900:CDS | 45.0% | |
| GTGCTGTGAGAGATCTTAAG+AGG | - | chr8_3:21913634-21913653 | Msa1281900:CDS | 45.0% | |
| GCTGTGAGAGATCTTAAGAG+GGG | - | chr8_3:21913636-21913655 | Msa1281900:CDS | 45.0% | |
| AACCGATCTAAAGGGACTAG+AGG | + | chr8_3:21914210-21914229 | None:intergenic | 45.0% | |
| ATGCTCTGATTTCACGTGTC+AGG | + | chr8_3:21914575-21914594 | None:intergenic | 45.0% | |
| AGGTCGTGAGACACTTGAAT+GGG | - | chr8_3:21914632-21914651 | Msa1281900:intron | 45.0% | |
| TTAACAGGCTTGACGTTTGG+TGG | + | chr8_3:21914744-21914763 | None:intergenic | 45.0% | |
| ACCAAACGTCAAGCCTGTTA+AGG | - | chr8_3:21914743-21914762 | Msa1281900:intron | 45.0% | |
| TAAACTGGTATGGGTCGATC+AGG | + | chr8_3:21914788-21914807 | None:intergenic | 45.0% | |
| !! | GGTGGACTGTAAACTGGTAT+GGG | + | chr8_3:21914797-21914816 | None:intergenic | 45.0% |
| !! | TGGTGGACTGTAAACTGGTA+TGG | + | chr8_3:21914798-21914817 | None:intergenic | 45.0% |
| GTAAGGGAAAGACTTCAAGG+TGG | - | chr8_3:21915439-21915458 | Msa1281900:CDS | 45.0% | |
| CTAACAGAGACTGAACTTGC+AGG | + | chr8_3:21915536-21915555 | None:intergenic | 45.0% | |
| ATCAGGTGGATGAAGCTATG+TGG | - | chr8_3:21915663-21915682 | Msa1281900:intron | 45.0% | |
| TCAGGTGGATGAAGCTATGT+GGG | - | chr8_3:21915664-21915683 | Msa1281900:intron | 45.0% | |
| GAAAGAAGCTCATGCCTTGA+TGG | - | chr8_3:21915724-21915743 | Msa1281900:intron | 45.0% | |
| AGCGTAGCAGTGTGGTTAAA+TGG | - | chr8_3:21915876-21915895 | Msa1281900:intron | 45.0% | |
| GTAGCAGTGTGGTTAAATGG+TGG | - | chr8_3:21915879-21915898 | Msa1281900:intron | 45.0% | |
| GTGTGGTTAAATGGTGGTCA+TGG | - | chr8_3:21915885-21915904 | Msa1281900:intron | 45.0% | |
| TTGTGAATGAATGCCCACCA+TGG | - | chr8_3:21915961-21915980 | Msa1281900:intron | 45.0% | |
| TAAAACGTCATTGCAGCCCA+TGG | + | chr8_3:21915992-21916011 | None:intergenic | 45.0% | |
| ATAATGTTGTCAACGGCGGA+AGG | + | chr8_3:21916031-21916050 | None:intergenic | 45.0% | |
| ! | TTGCTTGCCTTTCTGGTACT+TGG | - | chr8_3:21916233-21916252 | Msa1281900:intron | 45.0% |
| GCAATGTCCGAGAAGATATC+TGG | + | chr8_3:21916463-21916482 | None:intergenic | 45.0% | |
| CTCGGACATTGCATATACCA+TGG | - | chr8_3:21916471-21916490 | Msa1281900:intron | 45.0% | |
| CATATACCATGGGATGAAGC+TGG | - | chr8_3:21916482-21916501 | Msa1281900:intron | 45.0% | |
| AAACAACCAGCTTCATCCCA+TGG | + | chr8_3:21916491-21916510 | None:intergenic | 45.0% | |
| TAATTACGATGCACCTGGAG+AGG | - | chr8_3:21916532-21916551 | Msa1281900:intron | 45.0% | |
| CTACGTCGTCAATACCAGAT+AGG | + | chr8_3:21916559-21916578 | None:intergenic | 45.0% | |
| TCTCAGAGACTAACTGATGG+TGG | - | chr8_3:21916641-21916660 | Msa1281900:intron | 45.0% | |
| CTCAGAGACTAACTGATGGT+GGG | - | chr8_3:21916642-21916661 | Msa1281900:intron | 45.0% | |
| GTGTACATAGCAGGTTCCAA+AGG | + | chr8_3:21917114-21917133 | None:intergenic | 45.0% | |
| ! | GCAAACGAAGGTTTTCCGTT+GGG | + | chr8_3:21917174-21917193 | None:intergenic | 45.0% |
| GGGCAACCCCTCATAATAAA+AGG | - | chr8_3:21917217-21917236 | Msa1281900:CDS | 45.0% | |
| CTCCAATGCATTCAGGAGTA+AGG | + | chr8_3:21917373-21917392 | None:intergenic | 45.0% | |
| GACTACACTCCAATGCATTC+AGG | + | chr8_3:21917380-21917399 | None:intergenic | 45.0% | |
| CGAGAAGGTCAATGGATAGA+TGG | - | chr8_3:21917526-21917545 | Msa1281900:CDS | 45.0% | |
| GATGGAAATTAGCCGTCTCA+TGG | - | chr8_3:21917544-21917563 | Msa1281900:CDS | 45.0% | |
| GCAGAGAGAATGACCAAGAG+AGG | + | chr8_3:21913405-21913424 | None:intergenic | 50.0% | |
| TCTACCTTTCCTCACTCTGG+CGG | - | chr8_3:21913428-21913447 | Msa1281900:CDS | 50.0% | |
| CTCTTCTCTCTCCTCTGTTC+AGG | - | chr8_3:21913752-21913771 | Msa1281900:CDS | 50.0% | |
| TTACAACAGTGGAGCTGCCT+AGG | - | chr8_3:21914316-21914335 | Msa1281900:intron | 50.0% | |
| GTATTCTTGGAGCTCCTCCT+AGG | + | chr8_3:21914336-21914355 | None:intergenic | 50.0% | |
| ATGAGCGTAAGTGCCTCCTA+AGG | - | chr8_3:21914399-21914418 | Msa1281900:CDS | 50.0% | |
| TGAGCGTAAGTGCCTCCTAA+GGG | - | chr8_3:21914400-21914419 | Msa1281900:CDS | 50.0% | |
| CAGGTCGTGAGACACTTGAA+TGG | - | chr8_3:21914631-21914650 | Msa1281900:intron | 50.0% | |
| ! | CTGATTTGCACAGCCCAGTT+GGG | - | chr8_3:21914666-21914685 | Msa1281900:intron | 50.0% |
| ! | TGATTTGCACAGCCCAGTTG+GGG | - | chr8_3:21914667-21914686 | Msa1281900:intron | 50.0% |
| ! | TGCCATGGTTGGTGTGACTA+TGG | - | chr8_3:21914697-21914716 | Msa1281900:intron | 50.0% |
| GACCATAGTCACACCAACCA+TGG | + | chr8_3:21914702-21914721 | None:intergenic | 50.0% | |
| !! | ACGTTTGGTGGACTGTGGTT+TGG | + | chr8_3:21914732-21914751 | None:intergenic | 50.0% |
| GCCTTAACAGGCTTGACGTT+TGG | + | chr8_3:21914747-21914766 | None:intergenic | 50.0% | |
| ! | AACAGGTGGGCTCAATGCTT+TGG | + | chr8_3:21915298-21915317 | None:intergenic | 50.0% |
| !! | AAGCATTGAGCCCACCTGTT+AGG | - | chr8_3:21915298-21915317 | Msa1281900:intron | 50.0% |
| TGAGCCCACCTGTTAGGATT+TGG | - | chr8_3:21915304-21915323 | Msa1281900:intron | 50.0% | |
| AACTTTGCGGCAAATGGACG+AGG | + | chr8_3:21915473-21915492 | None:intergenic | 50.0% | |
| GTTGCTATAGCGTAGCAGTG+TGG | - | chr8_3:21915868-21915887 | Msa1281900:intron | 50.0% | |
| TTTGCCTCACCATTCTGCCA+TGG | + | chr8_3:21915916-21915935 | None:intergenic | 50.0% | |
| GCTGGTTGTTTATGCCCTGT+TGG | - | chr8_3:21916500-21916519 | Msa1281900:intron | 50.0% | |
| ATACCAGATAGGTCCTCTCC+AGG | + | chr8_3:21916548-21916567 | None:intergenic | 50.0% | |
| ! | ACGAAGGTTTTCCGTTGGGA+TGG | + | chr8_3:21917170-21917189 | None:intergenic | 50.0% |
| ! | CGCAAACGAAGGTTTTCCGT+TGG | + | chr8_3:21917175-21917194 | None:intergenic | 50.0% |
| TACTAGCTGCGTTACGACTG+TGG | - | chr8_3:21917196-21917215 | Msa1281900:CDS | 50.0% | |
| ACTAGCTGCGTTACGACTGT+GGG | - | chr8_3:21917197-21917216 | Msa1281900:CDS | 50.0% | |
| GTCGGACGTCTTGCATATTC+TGG | - | chr8_3:21917246-21917265 | Msa1281900:CDS | 50.0% | |
| GGAAATTAGCCGTCTCATGG+AGG | - | chr8_3:21917547-21917566 | Msa1281900:CDS | 50.0% | |
| ATACCTGAGCCTCCATGAGA+CGG | + | chr8_3:21917559-21917578 | None:intergenic | 50.0% | |
| CTACCTTTCCTCACTCTGGC+GGG | - | chr8_3:21913429-21913448 | Msa1281900:CDS | 55.0% | |
| TTACCCGCCAGAGTGAGGAA+AGG | + | chr8_3:21913435-21913454 | None:intergenic | 55.0% | |
| ! | TGACTTGATGGGCCTCTCGT+TGG | - | chr8_3:21914448-21914467 | Msa1281900:CDS | 55.0% |
| ! | TTGATGGGCCTCTCGTTGGT+TGG | - | chr8_3:21914452-21914471 | Msa1281900:CDS | 55.0% |
| ! | CTCTCGTTGGTTGGCTGGTA+CGG | - | chr8_3:21914461-21914480 | Msa1281900:CDS | 55.0% |
| TCAGCTTCCCATGCCCTGTA+CGG | + | chr8_3:21914520-21914539 | None:intergenic | 55.0% | |
| !! | GCTGATTTGCACAGCCCAGT+TGG | - | chr8_3:21914665-21914684 | Msa1281900:intron | 55.0% |
| GATTTGCACAGCCCAGTTGG+GGG | - | chr8_3:21914668-21914687 | Msa1281900:intron | 55.0% | |
| !! | GCTTGACGTTTGGTGGACTG+TGG | + | chr8_3:21914737-21914756 | None:intergenic | 55.0% |
| TGCGGCAAATGGACGAGGTA+AGG | + | chr8_3:21915468-21915487 | None:intergenic | 55.0% | |
| !! | ATGGCTTTGGGCTGCTGCAA+CGG | - | chr8_3:21915787-21915806 | Msa1281900:intron | 55.0% |
| GCAGCTAGTAGCGCAAACGA+AGG | + | chr8_3:21917186-21917205 | None:intergenic | 55.0% | |
| ! | TCCTCACTCTGGCGGGTAAC+TGG | - | chr8_3:21913436-21913455 | Msa1281900:CDS | 60.0% |
| CAACAGTGGAGCTGCCTAGG+AGG | - | chr8_3:21914319-21914338 | Msa1281900:intron | 60.0% | |
| CGTACCAGCCAACCAACGAG+AGG | + | chr8_3:21914463-21914482 | None:intergenic | 60.0% | |
| AGGTTGCAGCTCGTCCGTAC+AGG | - | chr8_3:21914503-21914522 | Msa1281900:intron | 60.0% | |
| GGTTGCAGCTCGTCCGTACA+GGG | - | chr8_3:21914504-21914523 | Msa1281900:intron | 60.0% | |
| AGCTCGTCCGTACAGGGCAT+GGG | - | chr8_3:21914510-21914529 | Msa1281900:intron | 60.0% | |
| !! | ATGGTGCCGCCATGGCAGAA+TGG | - | chr8_3:21915904-21915923 | Msa1281900:intron | 60.0% |
| GCCTCACCATTCTGCCATGG+CGG | + | chr8_3:21915913-21915932 | None:intergenic | 60.0% | |
| TGCCCACCATGGAGTCTCCA+TGG | - | chr8_3:21915972-21915991 | Msa1281900:intron | 60.0% | |
| GCCCACCATGGAGTCTCCAT+GGG | - | chr8_3:21915973-21915992 | Msa1281900:intron | 60.0% | |
| GCCCATGGAGACTCCATGGT+GGG | + | chr8_3:21915977-21915996 | None:intergenic | 60.0% | |
| AGCCCATGGAGACTCCATGG+TGG | + | chr8_3:21915978-21915997 | None:intergenic | 60.0% | |
| TGCAGCCCATGGAGACTCCA+TGG | + | chr8_3:21915981-21916000 | None:intergenic | 60.0% | |
| GCACCTGGAGAGGACCTATC+TGG | - | chr8_3:21916542-21916561 | Msa1281900:intron | 60.0% | |
| TAGCCGTCTCATGGAGGCTC+AGG | - | chr8_3:21917553-21917572 | Msa1281900:CDS | 60.0% | |
| GCCAGTTACCCGCCAGAGTG+AGG | + | chr8_3:21913440-21913459 | None:intergenic | 65.0% | |
| ! | TGGGCCTCTCGTTGGTTGGC+TGG | - | chr8_3:21914456-21914475 | Msa1281900:CDS | 65.0% |
| CAGCTCGTCCGTACAGGGCA+TGG | - | chr8_3:21914509-21914528 | Msa1281900:intron | 65.0% | |
| GCTTACGTCACTGTGCCGCG+TGG | - | chr8_3:21914608-21914627 | Msa1281900:intron | 65.0% | |
| GTGTCTCACGACCTGCCACG+CGG | + | chr8_3:21914626-21914645 | None:intergenic | 65.0% | |
| !! | TGGTGGTCATGGTGCCGCCA+TGG | - | chr8_3:21915896-21915915 | Msa1281900:intron | 65.0% |
| GCCGCCATGGCAGAATGGTG+AGG | - | chr8_3:21915909-21915928 | Msa1281900:intron | 65.0% | |
| ACGTCACTGTGCCGCGTGGC+AGG | - | chr8_3:21914612-21914631 | Msa1281900:intron | 70.0% | |
| TGGCAAGCGCGCCCCCAACT+GGG | + | chr8_3:21914682-21914701 | None:intergenic | 70.0% | |
| ATGGCAAGCGCGCCCCCAAC+TGG | + | chr8_3:21914683-21914702 | None:intergenic | 70.0% | |
| ! | AGTTGGGGGCGCGCTTGCCA+TGG | - | chr8_3:21914682-21914701 | Msa1281900:intron | 70.0% |
| ! | GGGGGCGCGCTTGCCATGGT+TGG | - | chr8_3:21914686-21914705 | Msa1281900:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 21913246 | 21917707 | 21913246 | ID=Msa1281900;Name=Msa1281900 |
| chr8_3 | mRNA | 21913246 | 21917707 | 21913246 | ID=Msa1281900-mRNA-1;Parent=Msa1281900;Name=Msa1281900-mRNA-1;_AED=0.13;_eAED=0.13;_QI=50|0.83|0.71|1|0.83|0.71|7|66|477 |
| chr8_3 | exon | 21913246 | 21913935 | 21913246 | ID=Msa1281900-mRNA-1:exon:7921;Parent=Msa1281900-mRNA-1 |
| chr8_3 | exon | 21914226 | 21914306 | 21914226 | ID=Msa1281900-mRNA-1:exon:7920;Parent=Msa1281900-mRNA-1 |
| chr8_3 | exon | 21914340 | 21914489 | 21914340 | ID=Msa1281900-mRNA-1:exon:7919;Parent=Msa1281900-mRNA-1 |
| chr8_3 | exon | 21915145 | 21915285 | 21915145 | ID=Msa1281900-mRNA-1:exon:7918;Parent=Msa1281900-mRNA-1 |
| chr8_3 | exon | 21915414 | 21915545 | 21915414 | ID=Msa1281900-mRNA-1:exon:7917;Parent=Msa1281900-mRNA-1 |
| chr8_3 | exon | 21917180 | 21917330 | 21917180 | ID=Msa1281900-mRNA-1:exon:7916;Parent=Msa1281900-mRNA-1 |
| chr8_3 | exon | 21917503 | 21917707 | 21917503 | ID=Msa1281900-mRNA-1:exon:7915;Parent=Msa1281900-mRNA-1 |
| chr8_3 | five_prime_UTR | 21917658 | 21917707 | 21917658 | ID=Msa1281900-mRNA-1:five_prime_utr;Parent=Msa1281900-mRNA-1 |
| chr8_3 | CDS | 21917503 | 21917657 | 21917503 | ID=Msa1281900-mRNA-1:cds;Parent=Msa1281900-mRNA-1 |
| chr8_3 | CDS | 21917180 | 21917330 | 21917180 | ID=Msa1281900-mRNA-1:cds;Parent=Msa1281900-mRNA-1 |
| chr8_3 | CDS | 21915414 | 21915545 | 21915414 | ID=Msa1281900-mRNA-1:cds;Parent=Msa1281900-mRNA-1 |
| chr8_3 | CDS | 21915145 | 21915285 | 21915145 | ID=Msa1281900-mRNA-1:cds;Parent=Msa1281900-mRNA-1 |
| chr8_3 | CDS | 21914340 | 21914489 | 21914340 | ID=Msa1281900-mRNA-1:cds;Parent=Msa1281900-mRNA-1 |
| chr8_3 | CDS | 21914226 | 21914306 | 21914226 | ID=Msa1281900-mRNA-1:cds;Parent=Msa1281900-mRNA-1 |
| chr8_3 | CDS | 21913312 | 21913935 | 21913312 | ID=Msa1281900-mRNA-1:cds;Parent=Msa1281900-mRNA-1 |
| chr8_3 | three_prime_UTR | 21913246 | 21913311 | 21913246 | ID=Msa1281900-mRNA-1:three_prime_utr;Parent=Msa1281900-mRNA-1 |
| Gene Sequence |
| Protein sequence |
