Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1283590 | sp|Q9LES3|AI5L2_ARATH | 54.098 | 305 | 113 | 8 | 23 | 322 | 15 | 297 | 6.63e-87 | 266 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1283590 | G7L6Z1 | 92.547 | 322 | 15 | 1 | 1 | 322 | 1 | 313 | 0.0 | 585 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1283590 | TF | bZIP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0936030 | Msa1283590 | 0.806881 | 6.631089e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1283590 | MtrunA17_Chr8g0355121 | 92.547 | 322 | 15 | 1 | 1 | 322 | 1 | 313 | 0.0 | 585 |
| Msa1283590 | MtrunA17_Chr3g0080341 | 65.015 | 323 | 106 | 4 | 6 | 322 | 1 | 322 | 7.27e-146 | 413 |
| Msa1283590 | MtrunA17_Chr7g0254991 | 47.006 | 334 | 146 | 8 | 6 | 322 | 1 | 320 | 1.63e-84 | 257 |
| Msa1283590 | MtrunA17_Chr6g0460301 | 49.398 | 332 | 142 | 7 | 6 | 322 | 1 | 321 | 7.28e-81 | 248 |
| Msa1283590 | MtrunA17_Chr4g0044771 | 34.309 | 376 | 155 | 13 | 23 | 322 | 17 | 376 | 4.58e-47 | 162 |
| Msa1283590 | MtrunA17_Chr7g0266211 | 32.194 | 351 | 145 | 9 | 30 | 294 | 45 | 388 | 9.84e-36 | 134 |
| Msa1283590 | MtrunA17_Chr5g0440841 | 55.629 | 151 | 60 | 3 | 1 | 148 | 1 | 147 | 1.34e-34 | 127 |
| Msa1283590 | MtrunA17_Chr5g0440841 | 61.364 | 88 | 33 | 1 | 235 | 322 | 183 | 269 | 1.46e-24 | 100 |
| Msa1283590 | MtrunA17_Chr3g0133971 | 46.154 | 156 | 72 | 5 | 1 | 151 | 1 | 149 | 4.98e-31 | 120 |
| Msa1283590 | MtrunA17_Chr3g0133971 | 63.768 | 69 | 22 | 1 | 229 | 297 | 333 | 398 | 1.74e-17 | 82.8 |
| Msa1283590 | MtrunA17_Chr2g0321411 | 35.211 | 284 | 127 | 12 | 27 | 294 | 11 | 253 | 8.47e-31 | 117 |
| Msa1283590 | MtrunA17_Chr2g0321381 | 34.875 | 281 | 151 | 9 | 26 | 294 | 24 | 284 | 3.28e-29 | 113 |
| Msa1283590 | MtrunA17_Chr5g0424871 | 31.788 | 302 | 155 | 12 | 16 | 273 | 4 | 298 | 7.49e-24 | 99.4 |
| Msa1283590 | MtrunA17_Chr4g0051101 | 53.521 | 71 | 29 | 1 | 238 | 304 | 117 | 187 | 4.17e-13 | 67.0 |
| Msa1283590 | MtrunA17_Chr5g0405951 | 61.017 | 59 | 11 | 1 | 251 | 297 | 166 | 224 | 1.77e-11 | 63.5 |
| Msa1283590 | MtrunA17_Chr1g0201751 | 62.745 | 51 | 19 | 0 | 246 | 296 | 157 | 207 | 5.83e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1283590 | AT3G56850.1 | 54.098 | 305 | 113 | 8 | 23 | 322 | 15 | 297 | 6.74e-88 | 266 |
| Msa1283590 | AT2G41070.4 | 48.675 | 302 | 95 | 9 | 23 | 320 | 24 | 269 | 4.12e-72 | 224 |
| Msa1283590 | AT2G41070.3 | 48.675 | 302 | 95 | 9 | 23 | 320 | 15 | 260 | 4.21e-72 | 224 |
| Msa1283590 | AT2G41070.1 | 48.675 | 302 | 95 | 9 | 23 | 320 | 15 | 260 | 4.21e-72 | 224 |
| Msa1283590 | AT2G41070.2 | 48.675 | 302 | 95 | 9 | 23 | 320 | 15 | 260 | 4.21e-72 | 224 |
| Msa1283590 | AT2G41070.5 | 49.281 | 278 | 81 | 9 | 23 | 296 | 15 | 236 | 2.24e-65 | 206 |
| Msa1283590 | AT2G36270.1 | 33.594 | 384 | 141 | 11 | 21 | 297 | 34 | 410 | 2.48e-37 | 139 |
| Msa1283590 | AT2G36270.2 | 33.594 | 384 | 141 | 11 | 21 | 297 | 34 | 410 | 2.48e-37 | 139 |
| Msa1283590 | AT2G36270.3 | 33.594 | 384 | 141 | 11 | 21 | 297 | 34 | 410 | 7.13e-37 | 137 |
| Msa1283590 | AT3G44460.1 | 39.249 | 293 | 132 | 13 | 18 | 294 | 29 | 291 | 1.64e-30 | 118 |
| Msa1283590 | AT3G19290.2 | 47.143 | 140 | 55 | 3 | 24 | 144 | 34 | 173 | 6.96e-26 | 107 |
| Msa1283590 | AT3G19290.4 | 47.143 | 140 | 55 | 3 | 24 | 144 | 34 | 173 | 8.38e-26 | 106 |
| Msa1283590 | AT3G19290.4 | 59.016 | 61 | 22 | 1 | 236 | 296 | 340 | 397 | 8.20e-14 | 72.0 |
| Msa1283590 | AT3G19290.3 | 47.143 | 140 | 55 | 3 | 24 | 144 | 34 | 173 | 1.07e-25 | 106 |
| Msa1283590 | AT3G19290.3 | 59.016 | 61 | 22 | 1 | 236 | 296 | 340 | 397 | 1.31e-13 | 71.6 |
| Msa1283590 | AT3G19290.1 | 47.143 | 140 | 55 | 3 | 24 | 144 | 34 | 173 | 1.26e-25 | 106 |
| Msa1283590 | AT3G19290.1 | 59.016 | 61 | 22 | 1 | 236 | 296 | 340 | 397 | 1.42e-13 | 71.2 |
| Msa1283590 | AT3G19290.5 | 47.143 | 140 | 55 | 3 | 24 | 144 | 34 | 173 | 1.26e-25 | 106 |
| Msa1283590 | AT3G19290.5 | 59.016 | 61 | 22 | 1 | 236 | 296 | 340 | 397 | 1.42e-13 | 71.2 |
| Msa1283590 | AT4G34000.3 | 39.752 | 161 | 57 | 3 | 24 | 144 | 27 | 187 | 3.28e-24 | 102 |
| Msa1283590 | AT4G34000.3 | 65.079 | 63 | 21 | 1 | 234 | 296 | 357 | 418 | 3.03e-16 | 79.3 |
| Msa1283590 | AT4G34000.1 | 39.752 | 161 | 57 | 3 | 24 | 144 | 27 | 187 | 3.93e-24 | 102 |
| Msa1283590 | AT4G34000.1 | 49.495 | 99 | 39 | 3 | 234 | 322 | 357 | 454 | 1.68e-16 | 80.1 |
| Msa1283590 | AT4G34000.4 | 39.752 | 161 | 57 | 3 | 24 | 144 | 27 | 187 | 3.93e-24 | 102 |
| Msa1283590 | AT4G34000.4 | 49.495 | 99 | 39 | 3 | 234 | 322 | 357 | 454 | 1.68e-16 | 80.1 |
| Msa1283590 | AT4G34000.2 | 39.752 | 161 | 57 | 3 | 24 | 144 | 27 | 187 | 3.93e-24 | 102 |
| Msa1283590 | AT4G34000.2 | 49.495 | 99 | 39 | 3 | 234 | 322 | 357 | 454 | 1.68e-16 | 80.1 |
| Msa1283590 | AT5G42910.1 | 29.565 | 345 | 153 | 15 | 23 | 298 | 19 | 342 | 8.30e-23 | 97.8 |
| Msa1283590 | AT1G45249.10 | 41.912 | 136 | 61 | 3 | 24 | 144 | 21 | 153 | 1.17e-21 | 94.7 |
| Msa1283590 | AT1G45249.5 | 41.912 | 136 | 61 | 3 | 24 | 144 | 21 | 153 | 1.17e-21 | 94.7 |
| Msa1283590 | AT1G45249.7 | 41.912 | 136 | 61 | 3 | 24 | 144 | 36 | 168 | 2.35e-21 | 94.4 |
| Msa1283590 | AT1G45249.7 | 51.515 | 99 | 28 | 3 | 236 | 322 | 341 | 431 | 1.80e-18 | 85.9 |
| Msa1283590 | AT1G45249.6 | 41.912 | 136 | 61 | 3 | 24 | 144 | 36 | 168 | 2.35e-21 | 94.4 |
| Msa1283590 | AT1G45249.6 | 51.515 | 99 | 28 | 3 | 236 | 322 | 341 | 431 | 1.80e-18 | 85.9 |
| Msa1283590 | AT1G45249.4 | 41.912 | 136 | 61 | 3 | 24 | 144 | 21 | 153 | 2.45e-21 | 94.0 |
| Msa1283590 | AT1G45249.8 | 41.912 | 136 | 61 | 3 | 24 | 144 | 21 | 153 | 2.45e-21 | 94.0 |
| Msa1283590 | AT1G45249.2 | 41.912 | 136 | 61 | 3 | 24 | 144 | 21 | 153 | 2.45e-21 | 94.0 |
| Msa1283590 | AT1G45249.9 | 41.912 | 136 | 61 | 3 | 24 | 144 | 21 | 153 | 2.45e-21 | 94.0 |
| Msa1283590 | AT1G45249.1 | 41.912 | 136 | 61 | 3 | 24 | 144 | 21 | 153 | 2.65e-21 | 94.0 |
| Msa1283590 | AT1G45249.1 | 51.515 | 99 | 28 | 3 | 236 | 322 | 326 | 416 | 1.43e-18 | 86.3 |
| Msa1283590 | AT1G45249.3 | 41.912 | 136 | 61 | 3 | 24 | 144 | 21 | 153 | 3.71e-21 | 93.6 |
| Msa1283590 | AT1G45249.3 | 46.364 | 110 | 28 | 4 | 236 | 322 | 326 | 427 | 1.17e-15 | 77.8 |
| Msa1283590 | AT5G44080.1 | 32.203 | 236 | 103 | 9 | 100 | 320 | 120 | 313 | 3.37e-17 | 81.3 |
| Msa1283590 | AT4G35900.1 | 30.364 | 247 | 124 | 13 | 101 | 322 | 62 | 285 | 3.55e-17 | 80.9 |
| Msa1283590 | AT1G49720.1 | 46.875 | 96 | 39 | 2 | 236 | 322 | 300 | 392 | 4.17e-14 | 72.8 |
| Msa1283590 | AT1G49720.3 | 46.875 | 96 | 39 | 2 | 236 | 322 | 300 | 392 | 4.17e-14 | 72.8 |
| Msa1283590 | AT2G17770.2 | 48.276 | 87 | 42 | 2 | 236 | 322 | 112 | 195 | 1.35e-13 | 68.9 |
| Msa1283590 | AT1G49720.2 | 62.295 | 61 | 20 | 1 | 236 | 296 | 300 | 357 | 2.15e-13 | 70.9 |
| Msa1283590 | AT1G03970.1 | 30.348 | 201 | 86 | 6 | 100 | 297 | 85 | 234 | 7.44e-12 | 65.1 |
Find 95 sgRNAs with CRISPR-Local
Find 207 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGCATTGGGTGCACCTCTTA+TGG | 0.223647 | 8_3:+25190922 | Msa1283590:CDS |
| ATTCGACGTAGCTGATATTT+AGG | 0.229724 | 8_3:-25192139 | None:intergenic |
| TAACAGTGGTAATTGATAAA+TGG | 0.241554 | 8_3:+25190247 | Msa1283590:exon |
| GATGACATTGGAGGATTTCT+TGG | 0.249290 | 8_3:+25190652 | Msa1283590:CDS |
| ATCTACAAACCTCTACTTAT+AGG | 0.296760 | 8_3:-25192191 | None:intergenic |
| GATGAAGTTCAAAATCAATT+AGG | 0.300260 | 8_3:+25190371 | Msa1283590:CDS |
| GAGTGATGAACAAAGGTTTC+AGG | 0.303350 | 8_3:-25189326 | None:intergenic |
| AAGGAGCACTCCGGAGGATA+TGG | 0.328607 | 8_3:+25190979 | Msa1283590:CDS |
| CAAAATCAATTAGGTGACTT+AGG | 0.335660 | 8_3:+25190380 | Msa1283590:CDS |
| CGAGAGAGACAAACTACTTT+AGG | 0.337274 | 8_3:+25190626 | Msa1283590:CDS |
| CGCAGATGCCTGGAAGAAAA+AGG | 0.341085 | 8_3:+25190960 | Msa1283590:CDS |
| CTGTTTCCGTGCTCTTGAAC+GGG | 0.379424 | 8_3:-25191059 | None:intergenic |
| GGTTTGTAGATATAAGAATC+AGG | 0.382447 | 8_3:+25192203 | Msa1283590:three_prime_UTR |
| GCCTTCATTGTCCGTATTCG+TGG | 0.383060 | 8_3:-25190471 | None:intergenic |
| TGAGGCTGACACCTGCCTTT+TGG | 0.384315 | 8_3:+25192249 | Msa1283590:three_prime_UTR |
| CCGTTCAAGAGCACGGAAAC+AGG | 0.394263 | 8_3:+25191060 | Msa1283590:CDS |
| GGCTTACACAAATGAATTAG+AGG | 0.404750 | 8_3:+25191192 | Msa1283590:intron |
| TCTACAACGTCAAGCTAGTC+TGG | 0.406297 | 8_3:+25190517 | Msa1283590:CDS |
| GCATTGGGTGCACCTCTTAT+GGG | 0.408513 | 8_3:+25190923 | Msa1283590:CDS |
| TCTAGGAACAGGGATCAAAT+TGG | 0.411529 | 8_3:+25190189 | Msa1283590:intron |
| CATTGTCCGTATTCGTGGAC+TGG | 0.421785 | 8_3:-25190466 | None:intergenic |
| TAAATGGAAATTCAGACAAT+GGG | 0.422470 | 8_3:+25190263 | Msa1283590:exon |
| AGAAGACTGTGGATGAGGTT+TGG | 0.422682 | 8_3:+25190561 | Msa1283590:CDS |
| TGATATTTAGGTTCGGCAAT+TGG | 0.425901 | 8_3:-25192127 | None:intergenic |
| TCTAGGTTCATACTGCTTAG+TGG | 0.432596 | 8_3:-25190407 | None:intergenic |
| AAAATCAATTAGGTGACTTA+GGG | 0.436185 | 8_3:+25190381 | Msa1283590:CDS |
| TCCGTTTGCAGATAGTCATA+TGG | 0.455759 | 8_3:+25190901 | Msa1283590:CDS |
| AGAAAAGGATGATCAAGAAT+CGG | 0.457820 | 8_3:+25191026 | Msa1283590:CDS |
| GCAGATAGTCATATGGCATT+GGG | 0.461753 | 8_3:+25190908 | Msa1283590:CDS |
| CTGTTGAGAGAAGGCAGAAA+AGG | 0.461801 | 8_3:+25191011 | Msa1283590:CDS |
| TGCAGATAGTCATATGGCAT+TGG | 0.465956 | 8_3:+25190907 | Msa1283590:CDS |
| CCTGTTTCCGTGCTCTTGAA+CGG | 0.468292 | 8_3:-25191060 | None:intergenic |
| GTGTCAGATACGCAGATGCC+TGG | 0.469471 | 8_3:+25190950 | Msa1283590:CDS |
| ATAAGCGAACCTTTGTTTGT+CGG | 0.470045 | 8_3:-25189416 | None:intergenic |
| TCTGACACAGTTCCCATAAG+AGG | 0.474734 | 8_3:-25190935 | None:intergenic |
| GCAGCCGTAGTATCGGTATT+CGG | 0.482465 | 8_3:-25190713 | None:intergenic |
| GAGGATTTCTTGGTGAAAGC+AGG | 0.483426 | 8_3:+25190662 | Msa1283590:CDS |
| GGGTCTCAAGGTGGTGGAGA+TGG | 0.487387 | 8_3:+25190284 | Msa1283590:CDS |
| TGATACTGCTACATTTGAAT+CGG | 0.488650 | 8_3:-25190738 | None:intergenic |
| CAGCAAGAAGACTGTGGATG+AGG | 0.491713 | 8_3:+25190556 | Msa1283590:CDS |
| TTTAGGAGAGATGACATTGG+AGG | 0.495208 | 8_3:+25190643 | Msa1283590:CDS |
| GGGGATTTATATGCCTAGCC+AGG | 0.498570 | 8_3:+25190832 | Msa1283590:CDS |
| GAATAATAAAACTACAACAT+TGG | 0.498720 | 8_3:-25192329 | None:intergenic |
| TAAAGTTTCACGCCTGGAAG+AGG | 0.502778 | 8_3:+25191216 | Msa1283590:CDS |
| AGTATCACAGTTTCCTCCGC+AGG | 0.508441 | 8_3:+25190754 | Msa1283590:CDS |
| ACGTAGCTGATATTTAGGTT+CGG | 0.511389 | 8_3:-25192134 | None:intergenic |
| GCCATATGACTATCTGCAAA+CGG | 0.520435 | 8_3:-25190902 | None:intergenic |
| GAAAAGGATGATCAAGAATC+GGG | 0.521274 | 8_3:+25191027 | Msa1283590:CDS |
| TGTTGTAGATGCTGATATTG+TGG | 0.526222 | 8_3:-25190800 | None:intergenic |
| CAAGGTGGTGGAGATGGTAG+TGG | 0.530920 | 8_3:+25190290 | Msa1283590:CDS |
| GCATCTACAACAAAGTTCCA+TGG | 0.531471 | 8_3:+25190811 | Msa1283590:CDS |
| GGTGAACCAGTCCACGAATA+CGG | 0.535449 | 8_3:+25190460 | Msa1283590:CDS |
| GTCTTCTCCACCATATCCTC+CGG | 0.535473 | 8_3:-25190989 | None:intergenic |
| CATATTCCAGAGATACCAAA+AGG | 0.538582 | 8_3:-25192264 | None:intergenic |
| GTTTGTAGATATAAGAATCA+GGG | 0.539105 | 8_3:+25192204 | Msa1283590:three_prime_UTR |
| TGAAATGCTGAGGAAAAGAA+AGG | 0.539855 | 8_3:+25191243 | Msa1283590:CDS |
| AGAGGTTAAAGTTTCACGCC+TGG | 0.543773 | 8_3:+25191210 | Msa1283590:CDS |
| AGTTTCCTCCGCAGGGTCAG+TGG | 0.546455 | 8_3:+25190762 | Msa1283590:CDS |
| ATTCAGACAATGGGGTCTCA+AGG | 0.548755 | 8_3:+25190272 | Msa1283590:CDS |
| CATCTACAACAAAGTTCCAT+GGG | 0.551430 | 8_3:+25190812 | Msa1283590:CDS |
| TTCCAGAGATACCAAAAGGC+AGG | 0.552038 | 8_3:-25192260 | None:intergenic |
| AGATGCTGATATTGTGGTTG+CGG | 0.557999 | 8_3:-25190794 | None:intergenic |
| TTTCTCTCACCGACAAACAA+AGG | 0.564052 | 8_3:+25189407 | Msa1283590:five_prime_UTR |
| ACAATGGGGTCTCAAGGTGG+TGG | 0.565619 | 8_3:+25190278 | Msa1283590:CDS |
| ATAAATGGAAATTCAGACAA+TGG | 0.565908 | 8_3:+25190262 | Msa1283590:exon |
| TCCACGAATACGGACAATGA+AGG | 0.580287 | 8_3:+25190470 | Msa1283590:CDS |
| TAAACCGAATACCGATACTA+CGG | 0.583628 | 8_3:+25190709 | Msa1283590:CDS |
| CAAAGAAGAGTGATGAACAA+AGG | 0.587562 | 8_3:-25189333 | None:intergenic |
| CTGCTGCCCGTTCAAGAGCA+CGG | 0.591970 | 8_3:+25191053 | Msa1283590:CDS |
| TATAGCACAGCCGTTACACA+TGG | 0.595784 | 8_3:+25190856 | Msa1283590:CDS |
| TGGAGAAGACTGTTGAGAGA+AGG | 0.597925 | 8_3:+25191002 | Msa1283590:CDS |
| GAGCACTCCGGAGGATATGG+TGG | 0.597936 | 8_3:+25190982 | Msa1283590:CDS |
| ATCGGCCGCAGCCGTAGTAT+CGG | 0.598147 | 8_3:-25190720 | None:intergenic |
| TAGGTATGCAGATCTCAGAA+TGG | 0.602417 | 8_3:-25192172 | None:intergenic |
| GCACCTGACCCCATGTGTAA+CGG | 0.611183 | 8_3:-25190866 | None:intergenic |
| TTACTTTGTCTCTAGGAACA+GGG | 0.611259 | 8_3:+25190179 | Msa1283590:intron |
| ATCTGCATACCTATAAGTAG+AGG | 0.619400 | 8_3:+25192182 | Msa1283590:three_prime_UTR |
| CACAATTCCACTCTCTTGTG+CGG | 0.625308 | 8_3:+25190321 | Msa1283590:CDS |
| AAGAGGAAAATGAAATGCTG+AGG | 0.635284 | 8_3:+25191233 | Msa1283590:CDS |
| TACTTTAGGAGAGATGACAT+TGG | 0.639124 | 8_3:+25190640 | Msa1283590:CDS |
| GGGATTTATATGCCTAGCCA+GGG | 0.641870 | 8_3:+25190833 | Msa1283590:CDS |
| TACTGTAACCACTGACCCTG+CGG | 0.642687 | 8_3:-25190770 | None:intergenic |
| GAATACCGATACTACGGCTG+CGG | 0.648846 | 8_3:+25190715 | Msa1283590:CDS |
| TGTAACCACTGACCCTGCGG+AGG | 0.649342 | 8_3:-25190767 | None:intergenic |
| GCTAGGCATATAAATCCCCA+TGG | 0.652039 | 8_3:-25190828 | None:intergenic |
| ATTACTGAAGAACTTAACAG+AGG | 0.672176 | 8_3:-25192301 | None:intergenic |
| CAGACAATGGGGTCTCAAGG+TGG | 0.676726 | 8_3:+25190275 | Msa1283590:CDS |
| TAGCACAGCCGTTACACATG+GGG | 0.677657 | 8_3:+25190858 | Msa1283590:CDS |
| ATGAAGTGAATTGTTAACAG+TGG | 0.684459 | 8_3:+25190233 | Msa1283590:five_prime_UTR |
| AAATGGAAATTCAGACAATG+GGG | 0.686793 | 8_3:+25190264 | Msa1283590:exon |
| GTAACGGCTGTGCTATACCC+TGG | 0.689448 | 8_3:-25190850 | None:intergenic |
| ATAGCACAGCCGTTACACAT+GGG | 0.689708 | 8_3:+25190857 | Msa1283590:CDS |
| TGCATTCAGCAAGAAGACTG+TGG | 0.700030 | 8_3:+25190550 | Msa1283590:CDS |
| ATCTACAACAAAGTTCCATG+GGG | 0.739377 | 8_3:+25190813 | Msa1283590:CDS |
| CCAACAAAAGAAAGACAACG+AGG | 0.748926 | 8_3:+25190592 | Msa1283590:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAGTTTTAATTTTGAATTC+TGG | + | chr8_3:25189674-25189693 | Msa1283590:intron | 15.0% |
| !!! | AAGTTTTAATTTTGAATTCT+GGG | + | chr8_3:25189675-25189694 | Msa1283590:intron | 15.0% |
| !!! | TTGGATATTATTTTTTGTAA+GGG | - | chr8_3:25190003-25190022 | None:intergenic | 15.0% |
| !!! | TTTGGATATTATTTTTTGTA+AGG | - | chr8_3:25190004-25190023 | None:intergenic | 15.0% |
| !!! | AATTTGGTATTATATTTTGT+CGG | + | chr8_3:25190090-25190109 | Msa1283590:intron | 15.0% |
| !! | TAGTTATTGGATTATTTATT+AGG | + | chr8_3:25191598-25191617 | Msa1283590:intron | 15.0% |
| !!! | AATAAATGCTTTTTCTGTAA+TGG | + | chr8_3:25189551-25189570 | Msa1283590:intron | 20.0% |
| !!! | ATAAATGCTTTTTCTGTAAT+GGG | + | chr8_3:25189552-25189571 | Msa1283590:intron | 20.0% |
| !!! | ATCTCAATCACAATTTTTTT+TGG | - | chr8_3:25189584-25189603 | None:intergenic | 20.0% |
| !!! | AATTTGTGTGTTTTGAAAAT+GGG | + | chr8_3:25189836-25189855 | Msa1283590:intron | 20.0% |
| !! | AAGCAATCTAAAGAAAATAA+TGG | + | chr8_3:25189928-25189947 | Msa1283590:intron | 20.0% |
| !!! | ATTTGGTATTATATTTTGTC+GGG | + | chr8_3:25190091-25190110 | Msa1283590:intron | 20.0% |
| !! | CAAAAACCAATCAAATAATA+AGG | - | chr8_3:25191129-25191148 | None:intergenic | 20.0% |
| !! | TATAAGAGTTAAAGAGAAAA+AGG | - | chr8_3:25191500-25191519 | None:intergenic | 20.0% |
| !!! | ATTTTTACCTGTTAAAATCA+TGG | + | chr8_3:25191984-25192003 | Msa1283590:intron | 20.0% |
| !!! | TTTTTACCTGTTAAAATCAT+GGG | + | chr8_3:25191985-25192004 | Msa1283590:intron | 20.0% |
| ! | GTAACATAAACTAAGAAAAG+AGG | - | chr8_3:25189448-25189467 | None:intergenic | 25.0% |
| !! | AATTGTGATTGAGATGTTTT+TGG | + | chr8_3:25189589-25189608 | Msa1283590:intron | 25.0% |
| !!! | CAATTTGTGTGTTTTGAAAA+TGG | + | chr8_3:25189835-25189854 | Msa1283590:intron | 25.0% |
| !!! | ATTTGTGTGTTTTGAAAATG+GGG | + | chr8_3:25189837-25189856 | Msa1283590:intron | 25.0% |
| ! | TCTTTAGATTGCTTCAAAAA+GGG | - | chr8_3:25189922-25189941 | None:intergenic | 25.0% |
| ! | TTCTTTAGATTGCTTCAAAA+AGG | - | chr8_3:25189923-25189942 | None:intergenic | 25.0% |
| !! | TTTGGTATTATATTTTGTCG+GGG | + | chr8_3:25190092-25190111 | Msa1283590:intron | 25.0% |
| !! | TTTCTTTTTACTTTGTCTCT+AGG | + | chr8_3:25190172-25190191 | Msa1283590:intron | 25.0% |
| ! | TAACAGTGGTAATTGATAAA+TGG | + | chr8_3:25190247-25190266 | Msa1283590:exon | 25.0% |
| ! | ATAAATGGAAATTCAGACAA+TGG | + | chr8_3:25190262-25190281 | Msa1283590:exon | 25.0% |
| ! | TAAATGGAAATTCAGACAAT+GGG | + | chr8_3:25190263-25190282 | Msa1283590:exon | 25.0% |
| ! | GATGAAGTTCAAAATCAATT+AGG | + | chr8_3:25190371-25190390 | Msa1283590:CDS | 25.0% |
| ! | AAAATCAATTAGGTGACTTA+GGG | + | chr8_3:25190381-25190400 | Msa1283590:CDS | 25.0% |
| !! | AAAGCAATTATTCAGGTTTA+GGG | - | chr8_3:25191164-25191183 | None:intergenic | 25.0% |
| !! | TAAAGCAATTATTCAGGTTT+AGG | - | chr8_3:25191165-25191184 | None:intergenic | 25.0% |
| !! | GTTTGTTAAAGCAATTATTC+AGG | - | chr8_3:25191171-25191190 | None:intergenic | 25.0% |
| ! | GAATAATTGCTTTAACAAAC+AGG | + | chr8_3:25191171-25191190 | Msa1283590:intron | 25.0% |
| ! | TTATAATTTCAGCACAAGAT+AGG | + | chr8_3:25191370-25191389 | Msa1283590:intron | 25.0% |
| ! | TTATACAATTCTCTGCATTA+AGG | + | chr8_3:25191414-25191433 | Msa1283590:intron | 25.0% |
| ! | GTGTTAGATTTGAATGAAAT+AGG | + | chr8_3:25191527-25191546 | Msa1283590:intron | 25.0% |
| ! | ATAGTCATTAAGAATTGTTC+AGG | + | chr8_3:25191657-25191676 | Msa1283590:intron | 25.0% |
| ! | ATGGTTGTTTACTTGATATT+GGG | + | chr8_3:25191819-25191838 | Msa1283590:intron | 25.0% |
| ! | ATACTGCTAATTGAATGAAA+AGG | - | chr8_3:25191884-25191903 | None:intergenic | 25.0% |
| ! | GATAGAGACTTTATATAGTA+TGG | - | chr8_3:25191932-25191951 | None:intergenic | 25.0% |
| ! | TAATCTGAATAGTCAATAAG+AGG | - | chr8_3:25192051-25192070 | None:intergenic | 25.0% |
| ! | GTTTGTAGATATAAGAATCA+GGG | + | chr8_3:25192204-25192223 | Msa1283590:three_prime_UTR | 25.0% |
| !! | TTTTCTTGTAGTTTAATGTG+AGG | + | chr8_3:25192231-25192250 | Msa1283590:three_prime_UTR | 25.0% |
| !!! | TTTTTTTGTTCCGTGAAATG+AGG | + | chr8_3:25189782-25189801 | Msa1283590:intron | 30.0% |
| ! | AAACCATTTTCCTCATTTCA+CGG | - | chr8_3:25189795-25189814 | None:intergenic | 30.0% |
| ! | TGAAATGAGGAAAATGGTTT+TGG | + | chr8_3:25189795-25189814 | Msa1283590:intron | 30.0% |
| ! | GAAATGAGGAAAATGGTTTT+GGG | + | chr8_3:25189796-25189815 | Msa1283590:intron | 30.0% |
| !!! | TGTTTTGAAAATGGGGTTTT+GGG | + | chr8_3:25189844-25189863 | Msa1283590:intron | 30.0% |
| !! | TTTTGAGTAAAGACCCATTT+TGG | + | chr8_3:25189959-25189978 | Msa1283590:intron | 30.0% |
| ATTATTGTGAGGACCAAAAT+GGG | - | chr8_3:25189975-25189994 | None:intergenic | 30.0% | |
| AATTATTGTGAGGACCAAAA+TGG | - | chr8_3:25189976-25189995 | None:intergenic | 30.0% | |
| TAAGGGACTAAATTATTGTG+AGG | - | chr8_3:25189986-25190005 | None:intergenic | 30.0% | |
| CTTCTACATATGAAACTGTT+GGG | - | chr8_3:25190033-25190052 | None:intergenic | 30.0% | |
| CAACAGTTTCATATGTAGAA+GGG | + | chr8_3:25190032-25190051 | Msa1283590:intron | 30.0% | |
| ATGAAGTGAATTGTTAACAG+TGG | + | chr8_3:25190233-25190252 | Msa1283590:five_prime_UTR | 30.0% | |
| AAATGGAAATTCAGACAATG+GGG | + | chr8_3:25190264-25190283 | Msa1283590:exon | 30.0% | |
| CAAAATCAATTAGGTGACTT+AGG | + | chr8_3:25190380-25190399 | Msa1283590:CDS | 30.0% | |
| TGATACTGCTACATTTGAAT+CGG | - | chr8_3:25190741-25190760 | None:intergenic | 30.0% | |
| AGAAAAGGATGATCAAGAAT+CGG | + | chr8_3:25191026-25191045 | Msa1283590:CDS | 30.0% | |
| GCAAGTCCTTATTATTTGAT+TGG | + | chr8_3:25191120-25191139 | Msa1283590:intron | 30.0% | |
| ATGTACAAACTACTCAATCT+GGG | - | chr8_3:25191343-25191362 | None:intergenic | 30.0% | |
| AATGTACAAACTACTCAATC+TGG | - | chr8_3:25191344-25191363 | None:intergenic | 30.0% | |
| ! | TTGAGTAGTTTGTACATTTG+TGG | + | chr8_3:25191346-25191365 | Msa1283590:intron | 30.0% |
| !! | AATCCTTACTTGGTGTATTA+GGG | - | chr8_3:25191579-25191598 | None:intergenic | 30.0% |
| !! | TAATCCTTACTTGGTGTATT+AGG | - | chr8_3:25191580-25191599 | None:intergenic | 30.0% |
| !! | ACCAAGTAAGGATTAGTTAT+TGG | + | chr8_3:25191585-25191604 | Msa1283590:intron | 30.0% |
| TCCAATAACTAATCCTTACT+TGG | - | chr8_3:25191589-25191608 | None:intergenic | 30.0% | |
| CTATGTAAAAGATAGAGCAT+AGG | - | chr8_3:25191641-25191660 | None:intergenic | 30.0% | |
| !!! | GTTAGTTCTGATACAACTTT+TGG | + | chr8_3:25191736-25191755 | Msa1283590:intron | 30.0% |
| GATGGTTGTTTACTTGATAT+TGG | + | chr8_3:25191818-25191837 | Msa1283590:intron | 30.0% | |
| TTACTTGATATTGGGTGATT+TGG | + | chr8_3:25191827-25191846 | Msa1283590:intron | 30.0% | |
| CATTCAATTAGCAGTATTTG+TGG | + | chr8_3:25191887-25191906 | Msa1283590:intron | 30.0% | |
| TTAACAGGTAAAAATGACCA+CGG | - | chr8_3:25191979-25191998 | None:intergenic | 30.0% | |
| !! | TTTGTTCCCATGATTTTAAC+AGG | - | chr8_3:25191994-25192013 | None:intergenic | 30.0% |
| ATCTACAAACCTCTACTTAT+AGG | - | chr8_3:25192194-25192213 | None:intergenic | 30.0% | |
| GGTTTGTAGATATAAGAATC+AGG | + | chr8_3:25192203-25192222 | Msa1283590:three_prime_UTR | 30.0% | |
| ATTACTGAAGAACTTAACAG+AGG | - | chr8_3:25192304-25192323 | None:intergenic | 30.0% | |
| CAAAGAAGAGTGATGAACAA+AGG | - | chr8_3:25189336-25189355 | None:intergenic | 35.0% | |
| ! | ATAAGCGAACCTTTGTTTGT+CGG | - | chr8_3:25189419-25189438 | None:intergenic | 35.0% |
| ATTCAACAGTGACACTGAAT+TGG | + | chr8_3:25189614-25189633 | Msa1283590:intron | 35.0% | |
| !!! | GTGTTTTGAAAATGGGGTTT+TGG | + | chr8_3:25189843-25189862 | Msa1283590:intron | 35.0% |
| GAAACTGTTGGGTACTAATT+TGG | - | chr8_3:25190022-25190041 | None:intergenic | 35.0% | |
| CCTTCTACATATGAAACTGT+TGG | - | chr8_3:25190034-25190053 | None:intergenic | 35.0% | |
| CCAACAGTTTCATATGTAGA+AGG | + | chr8_3:25190031-25190050 | Msa1283590:intron | 35.0% | |
| ! | TATTTTGTCGGGGACTAAAT+TGG | + | chr8_3:25190102-25190121 | Msa1283590:intron | 35.0% |
| ! | ATTTTGTCGGGGACTAAATT+GGG | + | chr8_3:25190103-25190122 | Msa1283590:intron | 35.0% |
| AAAATTGCCAGGGATCAAAT+TGG | + | chr8_3:25190133-25190152 | Msa1283590:intron | 35.0% | |
| AAATTGCCAGGGATCAAATT+GGG | + | chr8_3:25190134-25190153 | Msa1283590:intron | 35.0% | |
| ! | TTTACTTTGTCTCTAGGAAC+AGG | + | chr8_3:25190178-25190197 | Msa1283590:intron | 35.0% |
| ! | TTACTTTGTCTCTAGGAACA+GGG | + | chr8_3:25190179-25190198 | Msa1283590:intron | 35.0% |
| ! | ACGAGCTTCTGAAAAATGTA+TGG | + | chr8_3:25190429-25190448 | Msa1283590:CDS | 35.0% |
| ! | GAAAAATGTATGGACTGTTG+AGG | + | chr8_3:25190439-25190458 | Msa1283590:CDS | 35.0% |
| ! | TACTTTAGGAGAGATGACAT+TGG | + | chr8_3:25190640-25190659 | Msa1283590:CDS | 35.0% |
| TAAACCGAATACCGATACTA+CGG | + | chr8_3:25190709-25190728 | Msa1283590:CDS | 35.0% | |
| TGTTGTAGATGCTGATATTG+TGG | - | chr8_3:25190803-25190822 | None:intergenic | 35.0% | |
| CATCTACAACAAAGTTCCAT+GGG | + | chr8_3:25190812-25190831 | Msa1283590:CDS | 35.0% | |
| ATCTACAACAAAGTTCCATG+GGG | + | chr8_3:25190813-25190832 | Msa1283590:CDS | 35.0% | |
| GAAAAGGATGATCAAGAATC+GGG | + | chr8_3:25191027-25191046 | Msa1283590:CDS | 35.0% | |
| GGCTTACACAAATGAATTAG+AGG | + | chr8_3:25191192-25191211 | Msa1283590:intron | 35.0% | |
| AAGAGGAAAATGAAATGCTG+AGG | + | chr8_3:25191233-25191252 | Msa1283590:CDS | 35.0% | |
| TGAAATGCTGAGGAAAAGAA+AGG | + | chr8_3:25191243-25191262 | Msa1283590:CDS | 35.0% | |
| TGTACAAACTACTCAATCTG+GGG | - | chr8_3:25191342-25191361 | None:intergenic | 35.0% | |
| TATCCCTAATACACCAAGTA+AGG | + | chr8_3:25191573-25191592 | Msa1283590:intron | 35.0% | |
| CTGCTCTCAATATACTACAA+TGG | + | chr8_3:25191765-25191784 | Msa1283590:intron | 35.0% | |
| ! | AAATATCTGCTGCTTCATGA+TGG | + | chr8_3:25191800-25191819 | Msa1283590:intron | 35.0% |
| ATATATGCACATTGTATCCG+TGG | + | chr8_3:25191959-25191978 | Msa1283590:intron | 35.0% | |
| AATATTTGTCCTCAACATGC+AGG | + | chr8_3:25192078-25192097 | Msa1283590:intron | 35.0% | |
| ! | TGATATTTAGGTTCGGCAAT+TGG | - | chr8_3:25192130-25192149 | None:intergenic | 35.0% |
| ! | ACGTAGCTGATATTTAGGTT+CGG | - | chr8_3:25192137-25192156 | None:intergenic | 35.0% |
| ATTCGACGTAGCTGATATTT+AGG | - | chr8_3:25192142-25192161 | None:intergenic | 35.0% | |
| ATCTGCATACCTATAAGTAG+AGG | + | chr8_3:25192182-25192201 | Msa1283590:three_prime_UTR | 35.0% | |
| CATATTCCAGAGATACCAAA+AGG | - | chr8_3:25192267-25192286 | None:intergenic | 35.0% | |
| GAGTGATGAACAAAGGTTTC+AGG | - | chr8_3:25189329-25189348 | None:intergenic | 40.0% | |
| TTTCTCTCACCGACAAACAA+AGG | + | chr8_3:25189407-25189426 | Msa1283590:five_prime_UTR | 40.0% | |
| CTGAATTGGTTGCATGCAAA+TGG | + | chr8_3:25189628-25189647 | Msa1283590:intron | 40.0% | |
| GTTCCGTGAAATGAGGAAAA+TGG | + | chr8_3:25189789-25189808 | Msa1283590:intron | 40.0% | |
| TTGTTTGACCTTGCATGCAA+AGG | + | chr8_3:25189879-25189898 | Msa1283590:intron | 40.0% | |
| TGTTTGACCTTGCATGCAAA+GGG | + | chr8_3:25189880-25189899 | Msa1283590:intron | 40.0% | |
| GACAATGTCGGAGACTAATT+TGG | + | chr8_3:25190074-25190093 | Msa1283590:intron | 40.0% | |
| TGAATACCCAATTTGATCCC+TGG | - | chr8_3:25190143-25190162 | None:intergenic | 40.0% | |
| TCTAGGAACAGGGATCAAAT+TGG | + | chr8_3:25190189-25190208 | Msa1283590:intron | 40.0% | |
| TCTAGGTTCATACTGCTTAG+TGG | - | chr8_3:25190410-25190429 | None:intergenic | 40.0% | |
| !! | CATTTTTCAGAAGCTCGTCT+AGG | - | chr8_3:25190427-25190446 | None:intergenic | 40.0% |
| ! | CCTCGTTGTCTTTCTTTTGT+TGG | - | chr8_3:25190595-25190614 | None:intergenic | 40.0% |
| CCAACAAAAGAAAGACAACG+AGG | + | chr8_3:25190592-25190611 | Msa1283590:CDS | 40.0% | |
| CGAGAGAGACAAACTACTTT+AGG | + | chr8_3:25190626-25190645 | Msa1283590:CDS | 40.0% | |
| TTTAGGAGAGATGACATTGG+AGG | + | chr8_3:25190643-25190662 | Msa1283590:CDS | 40.0% | |
| GATGACATTGGAGGATTTCT+TGG | + | chr8_3:25190652-25190671 | Msa1283590:CDS | 40.0% | |
| AGATGCTGATATTGTGGTTG+CGG | - | chr8_3:25190797-25190816 | None:intergenic | 40.0% | |
| GCATCTACAACAAAGTTCCA+TGG | + | chr8_3:25190811-25190830 | Msa1283590:CDS | 40.0% | |
| TCCGTTTGCAGATAGTCATA+TGG | + | chr8_3:25190901-25190920 | Msa1283590:CDS | 40.0% | |
| GCCATATGACTATCTGCAAA+CGG | - | chr8_3:25190905-25190924 | None:intergenic | 40.0% | |
| TGCAGATAGTCATATGGCAT+TGG | + | chr8_3:25190907-25190926 | Msa1283590:CDS | 40.0% | |
| GCAGATAGTCATATGGCATT+GGG | + | chr8_3:25190908-25190927 | Msa1283590:CDS | 40.0% | |
| ! | GCATTTCATTTTCCTCTTCC+AGG | - | chr8_3:25191231-25191250 | None:intergenic | 40.0% |
| TCTGGGGAATGAAAGGAATT+AGG | - | chr8_3:25191326-25191345 | None:intergenic | 40.0% | |
| TACTCAATCTGGGGAATGAA+AGG | - | chr8_3:25191333-25191352 | None:intergenic | 40.0% | |
| AATGCAAATGACACATGCTC+AGG | - | chr8_3:25191471-25191490 | None:intergenic | 40.0% | |
| ! | CTTGGTGTATTAGGGATATC+AGG | - | chr8_3:25191571-25191590 | None:intergenic | 40.0% |
| GCAGTATTTGTGGAAGATCT+TGG | + | chr8_3:25191897-25191916 | Msa1283590:intron | 40.0% | |
| GAATAGTCAATAAGAGGCGA+AGG | - | chr8_3:25192045-25192064 | None:intergenic | 40.0% | |
| TAGGTATGCAGATCTCAGAA+TGG | - | chr8_3:25192175-25192194 | None:intergenic | 40.0% | |
| TCTTGATCCCTTTGCATGCA+AGG | - | chr8_3:25189890-25189909 | None:intergenic | 45.0% | |
| TGTCCCGAATTCGACAATGT+CGG | + | chr8_3:25190062-25190081 | Msa1283590:intron | 45.0% | |
| TCTCCGACATTGTCGAATTC+GGG | - | chr8_3:25190068-25190087 | None:intergenic | 45.0% | |
| GTCTCCGACATTGTCGAATT+CGG | - | chr8_3:25190069-25190088 | None:intergenic | 45.0% | |
| ATTCAGACAATGGGGTCTCA+AGG | + | chr8_3:25190272-25190291 | Msa1283590:CDS | 45.0% | |
| CACAATTCCACTCTCTTGTG+CGG | + | chr8_3:25190321-25190340 | Msa1283590:CDS | 45.0% | |
| ! | AATTTTGCCGCACAAGAGAG+TGG | - | chr8_3:25190331-25190350 | None:intergenic | 45.0% |
| TCCACGAATACGGACAATGA+AGG | + | chr8_3:25190470-25190489 | Msa1283590:CDS | 45.0% | |
| TCTACAACGTCAAGCTAGTC+TGG | + | chr8_3:25190517-25190536 | Msa1283590:CDS | 45.0% | |
| TGCATTCAGCAAGAAGACTG+TGG | + | chr8_3:25190550-25190569 | Msa1283590:CDS | 45.0% | |
| AGAAGACTGTGGATGAGGTT+TGG | + | chr8_3:25190561-25190580 | Msa1283590:CDS | 45.0% | |
| GAGGATTTCTTGGTGAAAGC+AGG | + | chr8_3:25190662-25190681 | Msa1283590:CDS | 45.0% | |
| GCTAGGCATATAAATCCCCA+TGG | - | chr8_3:25190831-25190850 | None:intergenic | 45.0% | |
| GGGATTTATATGCCTAGCCA+GGG | + | chr8_3:25190833-25190852 | Msa1283590:CDS | 45.0% | |
| TATAGCACAGCCGTTACACA+TGG | + | chr8_3:25190856-25190875 | Msa1283590:CDS | 45.0% | |
| ATAGCACAGCCGTTACACAT+GGG | + | chr8_3:25190857-25190876 | Msa1283590:CDS | 45.0% | |
| TCTGACACAGTTCCCATAAG+AGG | - | chr8_3:25190938-25190957 | None:intergenic | 45.0% | |
| !! | TGGAAGAAAAAGGAGCACTC+CGG | + | chr8_3:25190970-25190989 | Msa1283590:CDS | 45.0% |
| TGGAGAAGACTGTTGAGAGA+AGG | + | chr8_3:25191002-25191021 | Msa1283590:CDS | 45.0% | |
| CTGTTGAGAGAAGGCAGAAA+AGG | + | chr8_3:25191011-25191030 | Msa1283590:CDS | 45.0% | |
| AGAGGTTAAAGTTTCACGCC+TGG | + | chr8_3:25191210-25191229 | Msa1283590:CDS | 45.0% | |
| TAAAGTTTCACGCCTGGAAG+AGG | + | chr8_3:25191216-25191235 | Msa1283590:CDS | 45.0% | |
| AGGGATATCAGGCTGATCAA+TGG | - | chr8_3:25191560-25191579 | None:intergenic | 45.0% | |
| TTCCAGAGATACCAAAAGGC+AGG | - | chr8_3:25192263-25192282 | None:intergenic | 45.0% | |
| TGGGTCACGAGAAAATTGCC+AGG | + | chr8_3:25190122-25190141 | Msa1283590:intron | 50.0% | |
| GGGTCACGAGAAAATTGCCA+GGG | + | chr8_3:25190123-25190142 | Msa1283590:intron | 50.0% | |
| GGTGAACCAGTCCACGAATA+CGG | + | chr8_3:25190460-25190479 | Msa1283590:CDS | 50.0% | |
| CATTGTCCGTATTCGTGGAC+TGG | - | chr8_3:25190469-25190488 | None:intergenic | 50.0% | |
| GCCTTCATTGTCCGTATTCG+TGG | - | chr8_3:25190474-25190493 | None:intergenic | 50.0% | |
| CAGCAAGAAGACTGTGGATG+AGG | + | chr8_3:25190556-25190575 | Msa1283590:CDS | 50.0% | |
| !! | GCAGCCGTAGTATCGGTATT+CGG | - | chr8_3:25190716-25190735 | None:intergenic | 50.0% |
| GAATACCGATACTACGGCTG+CGG | + | chr8_3:25190715-25190734 | Msa1283590:CDS | 50.0% | |
| AGTATCACAGTTTCCTCCGC+AGG | + | chr8_3:25190754-25190773 | Msa1283590:CDS | 50.0% | |
| GTATCACAGTTTCCTCCGCA+GGG | + | chr8_3:25190755-25190774 | Msa1283590:CDS | 50.0% | |
| TACTGTAACCACTGACCCTG+CGG | - | chr8_3:25190773-25190792 | None:intergenic | 50.0% | |
| GGGGATTTATATGCCTAGCC+AGG | + | chr8_3:25190832-25190851 | Msa1283590:CDS | 50.0% | |
| TAGCACAGCCGTTACACATG+GGG | + | chr8_3:25190858-25190877 | Msa1283590:CDS | 50.0% | |
| GCATTGGGTGCACCTCTTAT+GGG | + | chr8_3:25190923-25190942 | Msa1283590:CDS | 50.0% | |
| CGCAGATGCCTGGAAGAAAA+AGG | + | chr8_3:25190960-25190979 | Msa1283590:CDS | 50.0% | |
| !! | GGAGTGCTCCTTTTTCTTCC+AGG | - | chr8_3:25190971-25190990 | None:intergenic | 50.0% |
| !! | AAGAAAAAGGAGCACTCCGG+AGG | + | chr8_3:25190973-25190992 | Msa1283590:CDS | 50.0% |
| GTCTTCTCCACCATATCCTC+CGG | - | chr8_3:25190992-25191011 | None:intergenic | 50.0% | |
| CTGTTTCCGTGCTCTTGAAC+GGG | - | chr8_3:25191062-25191081 | None:intergenic | 50.0% | |
| CCTGTTTCCGTGCTCTTGAA+CGG | - | chr8_3:25191063-25191082 | None:intergenic | 50.0% | |
| ! | TCTCTAGCTCCTGCATGTTG+AGG | - | chr8_3:25192090-25192109 | None:intergenic | 50.0% |
| ! | CACCTGCCTTTTGGTATCTC+TGG | + | chr8_3:25192258-25192277 | Msa1283590:three_prime_UTR | 50.0% |
| CAGACAATGGGGTCTCAAGG+TGG | + | chr8_3:25190275-25190294 | Msa1283590:CDS | 55.0% | |
| ACAATGGGGTCTCAAGGTGG+TGG | + | chr8_3:25190278-25190297 | Msa1283590:CDS | 55.0% | |
| !! | CAAGGTGGTGGAGATGGTAG+TGG | + | chr8_3:25190290-25190309 | Msa1283590:CDS | 55.0% |
| GTAACGGCTGTGCTATACCC+TGG | - | chr8_3:25190853-25190872 | None:intergenic | 55.0% | |
| GCACCTGACCCCATGTGTAA+CGG | - | chr8_3:25190869-25190888 | None:intergenic | 55.0% | |
| ! | GGCATTGGGTGCACCTCTTA+TGG | + | chr8_3:25190922-25190941 | Msa1283590:CDS | 55.0% |
| GTGTCAGATACGCAGATGCC+TGG | + | chr8_3:25190950-25190969 | Msa1283590:CDS | 55.0% | |
| !! | AAGGAGCACTCCGGAGGATA+TGG | + | chr8_3:25190979-25190998 | Msa1283590:CDS | 55.0% |
| ! | CCGTTCAAGAGCACGGAAAC+AGG | + | chr8_3:25191060-25191079 | Msa1283590:CDS | 55.0% |
| ! | TGAGGCTGACACCTGCCTTT+TGG | + | chr8_3:25192249-25192268 | Msa1283590:three_prime_UTR | 55.0% |
| !! | GGGTCTCAAGGTGGTGGAGA+TGG | + | chr8_3:25190284-25190303 | Msa1283590:CDS | 60.0% |
| ATCGGCCGCAGCCGTAGTAT+CGG | - | chr8_3:25190723-25190742 | None:intergenic | 60.0% | |
| AGTTTCCTCCGCAGGGTCAG+TGG | + | chr8_3:25190762-25190781 | Msa1283590:CDS | 60.0% | |
| TGTAACCACTGACCCTGCGG+AGG | - | chr8_3:25190770-25190789 | None:intergenic | 60.0% | |
| GGCTGTGCTATACCCTGGCT+AGG | - | chr8_3:25190848-25190867 | None:intergenic | 60.0% | |
| CAGCCGTTACACATGGGGTC+AGG | + | chr8_3:25190863-25190882 | Msa1283590:CDS | 60.0% | |
| CATGGGGTCAGGTGCTTCGA+TGG | + | chr8_3:25190874-25190893 | Msa1283590:CDS | 60.0% | |
| GAGCACTCCGGAGGATATGG+TGG | + | chr8_3:25190982-25191001 | Msa1283590:CDS | 60.0% | |
| CTGCTGCCCGTTCAAGAGCA+CGG | + | chr8_3:25191053-25191072 | Msa1283590:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 25189295 | 25192337 | 25189295 | ID=Msa1283590;Name=Msa1283590 |
| chr8_3 | mRNA | 25189295 | 25192337 | 25189295 | ID=Msa1283590-mRNA-1;Parent=Msa1283590;Name=Msa1283590-mRNA-1;_AED=0.04;_eAED=0.04;_QI=206|1|1|1|0.66|0.5|4|157|322 |
| chr8_3 | exon | 25189295 | 25189428 | 25189295 | ID=Msa1283590-mRNA-1:exon:8819;Parent=Msa1283590-mRNA-1 |
| chr8_3 | exon | 25190194 | 25191081 | 25190194 | ID=Msa1283590-mRNA-1:exon:8820;Parent=Msa1283590-mRNA-1 |
| chr8_3 | exon | 25191193 | 25191264 | 25191193 | ID=Msa1283590-mRNA-1:exon:8821;Parent=Msa1283590-mRNA-1 |
| chr8_3 | exon | 25192100 | 25192337 | 25192100 | ID=Msa1283590-mRNA-1:exon:8822;Parent=Msa1283590-mRNA-1 |
| chr8_3 | five_prime_UTR | 25189295 | 25189428 | 25189295 | ID=Msa1283590-mRNA-1:five_prime_utr;Parent=Msa1283590-mRNA-1 |
| chr8_3 | five_prime_UTR | 25190194 | 25190265 | 25190194 | ID=Msa1283590-mRNA-1:five_prime_utr;Parent=Msa1283590-mRNA-1 |
| chr8_3 | CDS | 25190266 | 25191081 | 25190266 | ID=Msa1283590-mRNA-1:cds;Parent=Msa1283590-mRNA-1 |
| chr8_3 | CDS | 25191193 | 25191264 | 25191193 | ID=Msa1283590-mRNA-1:cds;Parent=Msa1283590-mRNA-1 |
| chr8_3 | CDS | 25192100 | 25192180 | 25192100 | ID=Msa1283590-mRNA-1:cds;Parent=Msa1283590-mRNA-1 |
| chr8_3 | three_prime_UTR | 25192181 | 25192337 | 25192181 | ID=Msa1283590-mRNA-1:three_prime_utr;Parent=Msa1283590-mRNA-1 |
| Gene Sequence |
| Protein sequence |
