AlfalfaGEDB | Msa0936030

M. sativa cultivar zhongmu-4 / Msa0936030

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0936030	XP_003618369.1	97.895	95	2	0	1	95	1	95	1.23e-62	195

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0936030	G7KJF9	97.895	95	2	0	1	95	1	95	5.89e-63	195

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0035400	Msa0936030	0.800144	1.654156e-48	-8.615850e-47
Msa0412190	Msa0936030	0.813883	2.043042e-51	-8.615850e-47
Msa0870320	Msa0936030	0.800530	1.380560e-48	-8.615850e-47
Msa0936030	Msa1212760	0.810938	8.988657e-51	-8.615850e-47
Msa0936030	Msa1212980	0.803526	3.343231e-49	-8.615850e-47
Msa0936030	Msa1283590	0.806881	6.631089e-50	-8.615850e-47
Msa0936030	Msa1336950	0.833555	4.986887e-56	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0936030	MtrunA17_Chr6g0451831	97.895	95	2	0	1	95	1	95	1.13e-66	195
Msa0936030	MtrunA17_Chr2g0334081	43.103	58	31	1	10	65	1	58	1.42e-13	60.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0936030	AT5G43150.1	45.312	64	35	0	4	67	1	64	4.16e-14	62.4

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Find 48 sgRNAs with CRISPR-Local

Find 210 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCTGAGACACAATTCA+TGG	0.464808	6_3:-6637003	None:intergenic
AAATTAACAAAATTCCAAAA+TGG	0.316346	6_3:+6636706	Msa0936030:three_prime_UTR
AAGACTTCACATCATTTCTT+AGG	0.245992	6_3:-6636192	None:intergenic
AATCATCAATTTAGTCCTTG+AGG	0.549847	6_3:+6636655	Msa0936030:three_prime_UTR
AATCATGAATAAAGAGAATA+GGG	0.352912	6_3:+6636430	Msa0936030:three_prime_UTR
AATGAATCATTATCAGAGTT+TGG	0.349611	6_3:+6636259	Msa0936030:CDS
AATTCCAAAACGTGTGGCAA+TGG	0.529168	6_3:-6635085	None:intergenic
ACAATTTAGTTCGTGCGAAA+AGG	0.463261	6_3:-6636772	None:intergenic
ACATAAACATTGTGAAGTAG+TGG	0.592269	6_3:+6634946	Msa0936030:five_prime_UTR
ACTCAAAGACTAATGTGATC+CGG	0.466511	6_3:+6636798	Msa0936030:three_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACATAAACATTGTGAAGTAG+TGG	+	chr6_3:6634946-6634965	Msa0936030:five_prime_UTR	30.0%
CATATTCTTCAATACAGTCT+CGG	-	chr6_3:6634992-6635011	None:intergenic	30.0%
GAAATCCAAAACCTTCTAAA+AGG	-	chr6_3:6635066-6635085	None:intergenic	30.0%
CACGTTAATTGTAACATGTT+TGG	+	chr6_3:6635228-6635247	Msa0936030:intron	30.0%
ATTTGATACTTATACACTGC+CGG	-	chr6_3:6635662-6635681	None:intergenic	30.0%
CTGAATCAATAATCTTCAAC+AGG	-	chr6_3:6635685-6635704	None:intergenic	30.0%
TGGTGAGTTTGATGAAATTA+TGG	+	chr6_3:6635926-6635945	Msa0936030:intron	30.0%
ACATAATCAGAGAGCTATAT+AGG	-	chr6_3:6636124-6636143	None:intergenic	30.0%
TGAAATTGGAAAAATGTGCA+GGG	+	chr6_3:6636161-6636180	Msa0936030:intron	30.0%
AAGACTTCACATCATTTCTT+AGG	-	chr6_3:6636195-6636214	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_3	gene	6634771	6637110	6634771	ID=Msa0936030;Name=Msa0936030
chr6_3	mRNA	6634771	6637110	6634771	ID=Msa0936030-mRNA-1;Parent=Msa0936030;Name=Msa0936030-mRNA-1;_AED=0.00;_eAED=0.00;_QI=238\|1\|1\|1\|1\|1\|2\|750\|95
chr6_3	exon	6634771	6635117	6634771	ID=Msa0936030-mRNA-1:exon:2100;Parent=Msa0936030-mRNA-1
chr6_3	exon	6636182	6637110	6636182	ID=Msa0936030-mRNA-1:exon:2101;Parent=Msa0936030-mRNA-1
chr6_3	five_prime_UTR	6634771	6635008	6634771	ID=Msa0936030-mRNA-1:five_prime_utr;Parent=Msa0936030-mRNA-1
chr6_3	CDS	6635009	6635117	6635009	ID=Msa0936030-mRNA-1:cds;Parent=Msa0936030-mRNA-1
chr6_3	CDS	6636182	6636360	6636182	ID=Msa0936030-mRNA-1:cds;Parent=Msa0936030-mRNA-1
chr6_3	three_prime_UTR	6636361	6637110	6636361	ID=Msa0936030-mRNA-1:three_prime_utr;Parent=Msa0936030-mRNA-1

Gene Sequence	>Msa0936030 ATGGAGAAGATGAAATTCTCTCGGCAGGTGGAGTTGTGGCAGAATATCATGCATCCTTTTAGAAGGTTTTGGATTTCCATTGCCACACGTTTTGGAATTCGTAAAACTGGGTTGAAGAACCTAAGAAATGATGTGAAGTCTTGTGAATATGAAGATATTCGTGTGATGTGGGAGATGCTAAACAGAAATGAATCATTATCAGAGTTTGGTGGTGGTAATTCTCCAAACAAAATCAAGAAAATTCATTACTTGAAATTATTCAAATGGGCAAGGTGTGCTGCTCCATAA
Protein sequence	>Msa0936030 MEKMKFSRQVELWQNIMHPFRRFWISIATRFGIRKTGLKNLRNDVKSCEYEDIRVMWEMLNRNESLSEFGGGNSPNKIKKIHYLKLFKWARCAAP*